F085359

General Info

Members Datasets Scaffolds Average Seq Length
115 106 85 487

Family's Representative Sequence

Representative Sequence 3300048919|Ga0496116_0000232|Ga0496116_0000232_52107_53726
Length 539
Sequence VWLLKKSSFDLFLVFLACLKKRRLRFVAFSDEVRIMTHSVQYRLVDPVAMSRIDAAAEASGLSIISLMERAGQAVAACALRHYPEALRYAVLCGAGNNGGDGFVAARALRDAGADVAVFVFGDMVKLKGAARQAHEAWIQVSGDIGNQSLAAFTPRDGDVVIDGIFGAGLSRDVPPEVAAVIRAVGHAGTPVVAIDLPSGLCGRRGVALGSAFKAARTVTFVAKKPGHVLMPGREFCGALEVFDIGIPRRIVEANVGALWENSPDLWKSYLVHDDVETHKFKRGHLTVFAGPSHSTGAARMTAMSGLRTGAGIVTIAAPQEAIPVLSATLTAVMVTPIDDGDALGEWAEDARHGTYVLGPGFGDLEKARAFVALLKDRALVLDADGITAFKDDTLKLFSLFAQDAPRIMTPHEGEFARLFPDIHADDTLSKIEKAQAAAKCSNAVIIYKGADTVIAAPDGRASVNTNAPSSLATAGSGDVLAGICGALLAQQVPAFEAAAAAVWLHGEMGQRLGPGLIAEDLASAVRPFEAFEAMAQGG

Samples

Sample ID Description Type Environment
1 2509276019 Ensifer aridi TW10 Isolate Nodule
2 2510917030 Rhizobium sp. CF142 Isolate Rhizosphere
3 2516143018 Ensifer sp. BR816 Isolate Nodule
4 2582581294 Rhizobium sp. CF394 Isolate Rhizosphere
5 2582581298 Rhizobium alamii YR540 Isolate Rhizosphere
6 2585427529 Rhizobium alamii YR584 Isolate Rhizosphere
7 2600255279 Rhizobium sp. NFIX01 Isolate Rhizoplane
8 2643221568 Rhizobium sp. Root564 Isolate Unclassified
9 2643221653 Rhizobium sp. Root1240 Isolate Unclassified
10 2643221719 Rhizobium sp. Root274 Isolate Unclassified
11 2690316117 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
12 2751185821 Ensifer shofinae CCBAU 251167 Isolate Unclassified
13 2791355094 Sinorhizobium sp. BJ1 Isolate Nodule
14 2818991272 Rhizobium sp. SLBN-4 Isolate Unclassified
15 2821443989 Inquilinus ginsengisoli 584 Isolate Unclassified
16 2837651117 Pseudohoeflea suaedae YC6898 Isolate Unclassified
17 2842775625 Roseomonas sp. R-71825 Isolate Unclassified
18 2847417321 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
19 2848992105 Sinorhizobium fredii CCBAU 25509 Isolate Unclassified
20 2855872281 Sinorhizobium fredii PCH1 Isolate Nodule
21 2919100787 Rhizobium sp. 1399 Isolate Rhizosphere
22 2919166419 Agrobacterium cavarae 2074 Isolate Unclassified
23 2978969890 Agrobacterium sp. SORGH_AS 787 Isolate Unclassified
24 2984587000 Agrobacterium larrymoorei SORGH_AS974 Isolate Aerial Root
25 2989776772 Rhizobium glycinendophyticum CL12 Isolate Unclassified
26 3005445848 Rhizobium sp. WYJ-E13 Isolate Unclassified
27 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
28 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
29 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
30 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
31 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
32 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
33 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
34 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
35 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
36 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
37 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
38 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
39 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
40 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
41 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
42 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
43 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
44 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
45 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
46 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
47 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
53 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
54 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
55 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
56 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
57 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
58 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
59 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
60 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
61 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
62 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
63 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
64 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
65 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
66 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
67 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
68 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
69 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
70 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
71 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
72 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
73 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
74 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
75 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
76 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
77 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
78 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
79 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
80 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
81 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
83 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
85 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
86 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
87 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
88 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
89 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
90 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
91 3300053105 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 endosphere Metagenome Endosphere
92 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
93 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
94 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
95 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
96 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
97 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
98 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
99 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
100 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
101 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
102 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
103 643692032 Sinorhizobium fredii NGR234 Isolate Nodule
104 8005246636 Rhizobium wuzhouense W44 Isolate Rhizosphere
105 8054460903 Agrobacterium vaccinii B7.6 Isolate Unclassified
106 8054563764 Acuticoccus kalidii M5D2P5 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 73.04
Metatranscriptomes 0.87
Isolates 26.09

Biome Distribution

Category Percentage (%)
Aerial Root 0.87
Bulb 0
Endosphere 25.22
Nodule 4.35
Rhizoplane 2.61
Rhizosphere 43.48
Stem 0
Stem Tuber 0
Unclassified 23.48

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25159J45721_1001807 3300002987 Bacteria 8580
2 JGI25151J46595_10000436 3300003187 Bacteria 41270
3 JGI25153J46596_10021108 3300003215 Bacteria 2437
4 rootH2_10243036 3300003320 Bacteria 1989
5 Ga0006562J51391_1076433 3300003578 Bacteria 1650
6 Ga0055524_1001011 3300003775 Bacteria 17415
7 Ga0058692_1006739 3300003856 Bacteria 3117
8 Ga0070660_100013828 3300005339 Bacteria 5805
9 Ga0070660_100070354 3300005339 Bacteria 2731
10 Ga0068855_100028699 3300005563 Bacteria 6658
11 Ga0070717_10110528 3300006028 Bacteria 2344
12 Ga0075365_10042596 3300006038 Bacteria 2969
13 Ga0075362_10006709 3300006177 Bacteria 4302
14 Ga0075429_100034524 3300006880 Bacteria 4396
15 Ga0111539_10010103 3300009094 Bacteria 11897
16 Ga0111539_10104508 3300009094 Bacteria 3323
17 Ga0209129_1002576 3300025258 Bacteria 8719
18 Ga0209130_1000167 3300025284 Bacteria 95517
19 Ga0209025_1000077 3300025294 Bacteria 271958
20 Ga0209758_1001745 3300025297 Bacteria 24202
21 Ga0209758_1004420 3300025297 Bacteria 11708
22 Ga0209256_1000218 3300025299 Bacteria 106228
23 Ga0207426_1000239 3300025302 Bacteria 123307
24 Ga0207705_10003317 3300025909 Bacteria 12242
25 Ga0207707_10217912 3300025912 Bacteria 1662
26 Ga0207657_10003633 3300025919 Bacteria 16422
27 Ga0207667_10027676 3300025949 Bacteria 6166
28 Ga0207678_10020753 3300026067 Bacteria 5759
29 Ga0373935_0004179 3300035692 Bacteria 8456
30 Ga0373935_0022564 3300035692 Bacteria 3862
31 Ga0373927_0001008 3300035695 Bacteria 21456
32 Ga0373927_0011306 3300035695 Bacteria 5941
33 Ga0373933_0016468 3300035724 Bacteria 4135
34 Ga0373937_0004138 3300036401 Bacteria 12309
35 Ga0373925_0006417 3300037068 Bacteria 8655
36 Ga0436361_0958487 3300039447 Bacteria 12806
37 Ga0453684_0050532 3300044712 Bacteria 5467
38 Ga0495638_0002602 3300046460 Bacteria 14568
39 Ga0495607_0072753 3300046501 Bacteria 1913
40 Ga0495616_0058869 3300046513 Bacteria 1891
41 Ga0495631_0003853 3300046518 Bacteria 8127
42 Ga0495643_0014684 3300046522 Bacteria 4653
43 Ga0495643_0057106 3300046522 Bacteria 2081
44 Ga0495640_0010707 3300046533 Bacteria 7075
45 Ga0495622_0006003 3300046557 Bacteria 5644
46 Ga0495668_0015752 3300046616 Bacteria 4407
47 Ga0495625_0002142 3300046660 Bacteria 21952
48 Ga0495588_0001777 3300046674 Bacteria 9184
49 Ga0495660_0029504 3300046810 Bacteria 3094
50 Ga0495636_0021208 3300047318 Bacteria 2623
51 Ga0496106_0015046 3300048909 Bacteria 5725
52 Ga0496115_0089432 3300048918 Bacteria 2515
53 Ga0496116_0000232 3300048919 Bacteria 103015
54 Ga0496121_0043957 3300048924 Bacteria 3861
55 Ga0496122_0005516 3300048925 Bacteria 15027
56 Ga0496123_0036677 3300048926 Bacteria 3473
57 Ga0496124_0000377 3300048927 Bacteria 81321
58 Ga0496124_0038157 3300048927 Bacteria 4172
59 Ga0496125_0026738 3300048928 Bacteria 5245
60 Ga0496126_0000703 3300048929 Bacteria 61100
61 Ga0495678_021025 3300049459 Bacteria 2880
62 Ga0501033_0000995 3300049570 Bacteria 25798
63 Ga0501074_0019947 3300049590 Bacteria 4871
64 Ga0501035_0016695 3300049822 Bacteria 6769
65 Ga0501044_0131916 3300049823 Bacteria 2492
66 nmdc:mga0yw44_26111_c1 3300050492 Bacteria 3332
67 nmdc:mga0qj67_31065_c1 3300050509 Bacteria 4160
68 nmdc:mga06r32_8207_c1 3300050510 Bacteria 9400
69 nmdc:mga08y16_24329_c1 3300050511 Bacteria 6392
70 nmdc:mga08x19_2812_c1 3300050514 Bacteria 10494
71 nmdc:mga0sz30_38781_c1 3300050516 Bacteria 1997
72 Ga0500557_002759 3300053105 Bacteria 3313
73 Ga0500572_001089 3300053111 Bacteria 7974
74 Ga0500594_0003078 3300053118 Bacteria 3652
75 Ga0500595_014334 3300053119 Bacteria 3009
76 Ga0500658_0027403 3300053134 Bacteria 2203
77 Ga0500568_0001723 3300053139 Bacteria 13587
78 Ga0500568_0010137 3300053139 Bacteria 4431
79 Ga0500616_0002976 3300053153 Bacteria 13425
80 Ga0500622_0003074 3300053156 Bacteria 11504
81 Ga0500624_000266 3300053157 Bacteria 18246
82 Ga0500634_0051952 3300053161 Bacteria 2203
83 Ga0500636_0000202 3300053177 Bacteria 32341
84 Ga0500636_0002355 3300053177 Bacteria 10490
85 Ga0500637_0000281 3300053178 Bacteria 18982

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300050509 nmdc:mga0qj67_31065_c1 nmdc:mga0qj67_31065_c1_274_1806 421
2 3300050510 nmdc:mga06r32_8207_c1 nmdc:mga06r32_8207_c1_7219_8751 421
3 3300006880 Ga0075429_100034524 Ga0075429_1000345241 433
4 3300009094 Ga0111539_10104508 Ga0111539_101045083 434
5 3300009094 Ga0111539_10010103 Ga0111539_100101032 435
6 3300049590 Ga0501074_0019947 Ga0501074_0019947_17_1429 439
7 3300006038 Ga0075365_10042596 Ga0075365_100425963 441
8 3300050492 nmdc:mga0yw44_26111_c1 nmdc:mga0yw44_26111_c1_1096_2586 441
9 3300050511 nmdc:mga08y16_24329_c1 nmdc:mga08y16_24329_c1_900_2447 446
10 3300005339 Ga0070660_100013828 Ga0070660_1000138283 448
11 3300049823 Ga0501044_0131916 Ga0501044_0131916_330_1781 462
12 3300053161 Ga0500634_0051952 Ga0500634_0051952_130_1605 462
13 3300003320 rootH2_10243036 rootH2_102430362 463
14 3300048927 Ga0496124_0000377 Ga0496124_0000377_13620_15068 464
15 iso_pu_bacteria 2842775625 2842776985 465
16 3300046674 Ga0495588_0001777 Ga0495588_0001777_7229_8704 466
17 3300035724 Ga0373933_0016468 Ga0373933_0016468_1296_2792 468
18 3300036401 Ga0373937_0004138 Ga0373937_0004138_9753_11249 468
19 3300048918 Ga0496115_0089432 Ga0496115_0089432_363_1859 468
20 3300053119 Ga0500595_014334 Ga0500595_014334_855_2300 469
21 iso_pu_bacteria 8054563764 8054565210 470
22 3300003775 Ga0055524_1001011 Ga0055524_100101120 471
23 3300025299 Ga0209256_1000218 Ga0209256_100021851 471
24 3300044712 Ga0453684_0050532 Ga0453684_0050532_2123_3565 471
25 3300053157 Ga0500624_000266 Ga0500624_000266_900_2375 471
26 3300006028 Ga0070717_10110528 Ga0070717_101105283 473
27 iso_pu_bacteria 2821443989 2821447819 473
28 3300050514 nmdc:mga08x19_2812_c1 nmdc:mga08x19_2812_c1_5307_6806 474
29 iso_pu_bacteria 2837651117 2837653050 474
30 3300035692 Ga0373935_0022564 Ga0373935_0022564_583_2031 475
31 3300003187 JGI25151J46595_10000436 JGI25151J46595_1000043625 476
32 3300025284 Ga0209130_1000167 Ga0209130_100016766 476
33 3300025294 Ga0209025_1000077 Ga0209025_100007774 476
34 3300025297 Ga0209758_1004420 Ga0209758_10044207 476
35 3300025302 Ga0207426_1000239 Ga0207426_100023974 476
36 3300046460 Ga0495638_0002602 Ga0495638_0002602_6722_8155 476
37 3300046522 Ga0495643_0057106 Ga0495643_0057106_464_1897 476
38 3300047318 Ga0495636_0021208 Ga0495636_0021208_372_1805 476
39 3300053139 Ga0500568_0001723 Ga0500568_0001723_6651_8084 476
40 3300053153 Ga0500616_0002976 Ga0500616_0002976_5706_7139 476
41 3300039447 Ga0436361_0958487 Ga0436361_0958487_3450_4922 477
42 3300035692 Ga0373935_0004179 Ga0373935_0004179_5238_6731 479
43 3300046533 Ga0495640_0010707 Ga0495640_0010707_4837_6330 479
44 3300005339 Ga0070660_100070354 Ga0070660_1000703542 480
45 3300005563 Ga0068855_100028699 Ga0068855_1000286997 480
46 3300025909 Ga0207705_10003317 Ga0207705_100033176 480
47 3300025912 Ga0207707_10217912 Ga0207707_102179122 480
48 3300025919 Ga0207657_10003633 Ga0207657_100036336 480
49 3300025949 Ga0207667_10027676 Ga0207667_100276766 480
50 3300026067 Ga0207678_10020753 Ga0207678_100207533 480
51 3300035695 Ga0373927_0001008 Ga0373927_0001008_7706_9220 481
52 3300037068 Ga0373925_0006417 Ga0373925_0006417_4288_5802 481
53 3300035695 Ga0373927_0011306 Ga0373927_0011306_3419_4945 482
54 iso_pu_bacteria 2516143018 2516209398 482
55 3300046557 Ga0495622_0006003 Ga0495622_0006003_2947_4479 483
56 3300053178 Ga0500637_0000281 Ga0500637_0000281_14969_16501 483
57 3300006177 Ga0075362_10006709 Ga0075362_100067094 484
58 iso_pu_bacteria 2643221568 2643857668 484
59 iso_pu_bacteria 2919166419 2919167848 484
60 iso_pu_bacteria 2978969890 2978974300 484
61 iso_pu_bacteria 2984587000 2984589642 484
62 iso_pu_bacteria 2509276019 2509376086 485
63 iso_pu_bacteria 2600255279 2601607975 485
64 iso_pu_bacteria 2643221653 2644300639 485
65 iso_pu_bacteria 2643221719 2644658707 485
66 iso_pu_bacteria 2690316117 2692316209 485
67 iso_pu_bacteria 2751185821 2753458211 485
68 iso_pu_bacteria 2791355094 2792641568 485
69 iso_pu_bacteria 2818991272 2819241908 485
70 iso_pu_bacteria 2847417321 2847418725 485
71 iso_pu_bacteria 2848992105 2848993705 485
72 iso_pu_bacteria 2855872281 2855874831 485
73 iso_pu_bacteria 2989776772 2989778803 485
74 iso_pu_bacteria 643692032 643825679 485
75 iso_pu_bacteria 8005246636 8005248353 485
76 3300049570 Ga0501033_0000995 Ga0501033_0000995_13317_14795 486
77 3300049822 Ga0501035_0016695 Ga0501035_0016695_4259_5737 486
78 iso_pu_bacteria 2510917030 2511193372 486
79 iso_pu_bacteria 2582581294 2585199975 486
80 iso_pu_bacteria 2582581298 2585225809 486
81 iso_pu_bacteria 2585427529 2585546769 486
82 iso_pu_bacteria 2919100787 2919107857 486
83 iso_pu_bacteria 3005445848 3005447304 486
84 3300048919 Ga0496116_0000232 Ga0496116_0000232_52107_53726 488
85 3300048925 Ga0496122_0005516 Ga0496122_0005516_9011_10486 488
86 3300048929 Ga0496126_0000703 Ga0496126_0000703_56396_57952 488
87 3300053111 Ga0500572_001089 Ga0500572_001089_3315_4787 488
88 3300053177 Ga0500636_0000202 Ga0500636_0000202_1267_2742 488
89 3300053177 Ga0500636_0002355 Ga0500636_0002355_954_2426 488
90 iso_pu_bacteria 8054460903 8054462811 488
91 3300003578 Ga0006562J51391_1076433 Ga0006562J51391_10764331 489
92 3300003856 Ga0058692_1006739 Ga0058692_10067391 489
93 3300002987 JGI25159J45721_1001807 JGI25159J45721_10018072 490
94 3300003215 JGI25153J46596_10021108 JGI25153J46596_100211082 490
95 3300025258 Ga0209129_1002576 Ga0209129_10025762 490
96 3300025297 Ga0209758_1001745 Ga0209758_10017458 490
97 3300046501 Ga0495607_0072753 Ga0495607_0072753_372_1847 490
98 3300046513 Ga0495616_0058869 Ga0495616_0058869_350_1825 490
99 3300046518 Ga0495631_0003853 Ga0495631_0003853_926_2401 490
100 3300046522 Ga0495643_0014684 Ga0495643_0014684_1184_2656 490
101 3300046616 Ga0495668_0015752 Ga0495668_0015752_1309_2784 490
102 3300046660 Ga0495625_0002142 Ga0495625_0002142_13504_14979 490
103 3300046810 Ga0495660_0029504 Ga0495660_0029504_1013_2488 490
104 3300048909 Ga0496106_0015046 Ga0496106_0015046_3397_4869 490
105 3300048924 Ga0496121_0043957 Ga0496121_0043957_482_1954 490
106 3300048926 Ga0496123_0036677 Ga0496123_0036677_986_2458 490
107 3300048927 Ga0496124_0038157 Ga0496124_0038157_1734_3206 490
108 3300048928 Ga0496125_0026738 Ga0496125_0026738_2760_4232 490
109 3300049459 Ga0495678_021025 Ga0495678_021025_1216_2691 490
110 3300050516 nmdc:mga0sz30_38781_c1 nmdc:mga0sz30_38781_c1_512_1984 490
111 3300053105 Ga0500557_002759 Ga0500557_002759_996_2471 490
112 3300053118 Ga0500594_0003078 Ga0500594_0003078_1124_2599 490
113 3300053134 Ga0500658_0027403 Ga0500658_0027403_311_1783 490
114 3300053139 Ga0500568_0010137 Ga0500568_0010137_559_2031 490
115 3300053156 Ga0500622_0003074 Ga0500622_0003074_7001_8473 490

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03853

YjeF_N

YjeF-related protein N-terminus

65

227

0.96

PF01256

Carb_kinase

Carbohydrate kinase

286

526

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
3rss-assembly1.cif.gz_A crystal structure of tm0922, a fusion of a domain of unknown function and adp/atp-dependent nad(p)h-hydrate dehydratase from thermotoga maritima soaked with nadp 0.8889 24 487
6efx-assembly1.cif.gz_A crystal structure of a yjef family protein from cryptococcus neoformans var. grubii serotype a in complex with amppnp 0.8749 226 487
6efw-assembly1.cif.gz_A crystal structure of a yjef family protein from cryptococcus neoformans var. grubii serotype a 0.8671 226 487
2r3b-assembly1.cif.gz_B crystal structure of a ribokinase-like superfamily protein (ef1790) from enterococcus faecalis v583 at 1.80 a resolution 0.8546 220 487
3rss-assembly1.cif.gz_A crystal structure of tm0922, a fusion of a domain of unknown function and adp/atp-dependent nad(p)h-hydrate dehydratase from thermotoga maritima soaked with nadp 0.8421 24 487
ID Description Score Start End Superfamily
af_P31806_15_224_3.40.50.10260 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;YjeF N-terminal domain 0.9344 9 211 3.40.50.10260
af_P31806_15_224_3.40.50.10260 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;YjeF N-terminal domain 0.9003 9 211 3.40.50.10260
3rs9A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;YjeF N-terminal domain 0.899 15 214 3.40.50.10260
af_P9WF11_209_473_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.8722 224 487 3.40.1190.20
af_P31806_227_500_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.8663 220 487 3.40.1190.20
ID Description Score Start End GO Terms
AF-K0W3D2-F1-model_v4 Bifunctional NAD(P)H-hydrate repair enzyme Nnr (EC 4.2.1.136) (EC 5.1.99.6) (Nicotinamide nucleotide repair protein) 0.9905 65 490 GO:0005524
GO:0016301
GO:0046872
GO:0052855
GO:0052856
GO:0110051
AF-K0W3D2-F1-model_v4 Bifunctional NAD(P)H-hydrate repair enzyme Nnr (EC 4.2.1.136) (EC 5.1.99.6) (Nicotinamide nucleotide repair protein) 0.9837 65 490 GO:0005524
GO:0016301
GO:0046872
GO:0052855
GO:0052856
GO:0110051
AF-A0A529TTM7-F1-model_v4 NAD(P)H-hydrate dehydratase 0.9823 371 487 GO:0005524
GO:0052855
GO:0052856
GO:0110051
AF-A0A5C8S3J6-F1-model_v4 Bifunctional NAD(P)H-hydrate repair enzyme (Nicotinamide nucleotide repair protein) [Includes: ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136) (ADP-dependent NAD(P)HX dehydratase); NAD(P)H-hydrate epimerase (EC 5.1.99.6)] 0.9741 4 485 GO:0005524
GO:0046496
GO:0046872
GO:0052855
GO:0052856
GO:0110051
AF-A0A529UJQ2-F1-model_v4 deleted 0.97 7 215

Feature Viewer

pLDDT pTM Quality
93.4 0.92 High
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Predicted Structure (AlphaFold2)

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