F083563

General Info

Members Datasets Scaffolds Average Seq Length
115 99 230 314

Family's Representative Sequence

Representative Sequence 3300009551|Ga0105238_10015194|Ga0105238_100151946
Length 339
Sequence MAASGKAVLVALNGKGVRMANDLASEADNAVAQEMGLLSEQAIARRHKAVALGTEDLARIARIREAILPRVEEYAAAFFGYLGELDEAREFLRNRDAVEQARRLKTEHLVAMVGGQYGPAYALQRIKLGRLYSRAGLELRLFLGAFHDLLRRLGTTLLESAKTGEEAFQDFMSLKKVAFFDIGIIVDVMVFERERVISRQQEAIRELTTPVLQIRDRLLMLPIIGTIDTHRARMLTEGLLHSIRANRAKVVVMDVTGVGAVDTKVANHLLQTVAASRLMGATVIVTGLSAEVSQTLVNLGVDLTALQTIGDLQGGIEEAERLIGYQVLRADQRIAALPS

Samples

Sample ID Description Type Environment
1 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
2 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
3 3300003162 Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_21 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
4 3300003305 Avena fatua rhizosphere microbial communities - H3_Rhizo_Litter_13 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
5 3300003308 Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_20 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300003693 Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_49 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
8 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
9 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
10 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
11 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
12 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
13 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
14 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
15 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
16 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
17 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
18 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
19 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
20 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
21 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
22 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
23 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
24 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
25 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
26 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
27 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
28 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
29 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
30 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
31 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
32 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
33 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
34 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
35 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
36 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
37 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
38 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
39 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
40 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
41 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
66 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
67 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
68 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
69 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
70 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
71 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
72 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
73 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
74 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
75 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
76 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
77 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
78 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
79 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
80 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
81 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
82 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
83 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
84 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
85 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
86 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
87 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
88 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
89 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
90 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
91 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
92 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
93 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
94 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
95 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
96 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
97 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
98 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
99 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.52
Metatranscriptomes 3.48
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.35
Nodule 0
Rhizoplane 0
Rhizosphere 88.7
Stem 0
Stem Tuber 0
Unclassified 6.09

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0105238_10015194 3300009551 Bacteria 7795
2 JGI25156J39149_1021989 3300002705 Bacteria 1093
3 Ga0006778J45830_1033896 3300003162 Bacteria 3140
4 Ga0006770J48903_1019910 3300003305 Bacteria 1276
5 Ga0006777J48905_1016920 3300003308 Bacteria 2116
6 rootH1_10072251 3300003323 Bacteria 6070
7 rootH1_10123795 3300003323 Bacteria 2209
8 Ga0032354_1087500 3300003693 Bacteria 1264
9 Ga0070658_10030651 3300005327 Bacteria 4320
10 Ga0070680_100011308 3300005336 Bacteria 6903
11 Ga0070689_100000014 3300005340 Bacteria 185640
12 Ga0070687_100020505 3300005343 Bacteria 3092
13 Ga0070661_100068976 3300005344 Bacteria 2599
14 Ga0070674_100068267 3300005356 Bacteria 2504
15 Ga0070667_100271279 3300005367 Bacteria 1521
16 Ga0070709_10001207 3300005434 Bacteria 14174
17 Ga0070663_100001929 3300005455 Bacteria 11580
18 Ga0070678_100031517 3300005456 Bacteria 3659
19 Ga0070706_100108970 3300005467 Bacteria 2577
20 Ga0070707_100025014 3300005468 Bacteria 5662
21 Ga0070698_100590853 3300005471 Bacteria 1050
22 Ga0070699_100079190 3300005518 Bacteria 2862
23 Ga0070679_100011832 3300005530 Bacteria 8323
24 Ga0070679_100050961 3300005530 Bacteria 4123
25 Ga0070695_100188060 3300005545 Bacteria 1468
26 Ga0070693_100132278 3300005547 Unclassified 1561
27 Ga0070665_100044438 3300005548 Bacteria 4461
28 Ga0068855_100015382 3300005563 Bacteria 9212
29 Ga0068855_100096356 3300005563 Bacteria 3409
30 Ga0068856_100032011 3300005614 Bacteria 5147
31 Ga0068856_100117036 3300005614 Bacteria 2666
32 Ga0068856_100163353 3300005614 Bacteria 2238
33 Ga0068856_100173709 3300005614 Bacteria 2167
34 Ga0068861_100008464 3300005719 Bacteria 7085
35 Ga0068863_100000153 3300005841 Bacteria 72674
36 Ga0068863_100427468 3300005841 Bacteria 1298
37 Ga0068858_100000187 3300005842 Bacteria 65899
38 Ga0075366_10221361 3300006195 Unclassified 1153
39 Ga0105250_10005725 3300009092 Bacteria 5536
40 Ga0105242_10061486 3300009176 Bacteria 3089
41 Ga0105248_10052948 3300009177 Bacteria 4554
42 Ga0105237_10006501 3300009545 Bacteria 12953
43 Ga0105239_10008282 3300010375 Bacteria 11855
44 Ga0105239_10009832 3300010375 Bacteria 10745
45 Ga0157374_10012331 3300013296 Bacteria 7437
46 Ga0157378_10223375 3300013297 Bacteria 1791
47 Ga0213876_10002263 3300021384 Bacteria 11354
48 Ga0209759_1007654 3300025256 Bacteria 3447
49 Ga0207705_10010662 3300025909 Bacteria 6674
50 Ga0207684_10148347 3300025910 Bacteria 2017
51 Ga0207671_10011617 3300025914 Bacteria 7146
52 Ga0207660_10273497 3300025917 Unclassified 1339
53 Ga0207662_10032663 3300025918 Bacteria 3031
54 Ga0207652_10001451 3300025921 Bacteria 20975
55 Ga0207652_10071753 3300025921 Bacteria 3009
56 Ga0207646_10110045 3300025922 Bacteria 2472
57 Ga0207694_10007566 3300025924 Bacteria 8234
58 Ga0207706_10003512 3300025933 Bacteria 14974
59 Ga0207686_10043359 3300025934 Bacteria 2756
60 Ga0207670_10000003 3300025936 Bacteria 760449
61 Ga0207669_10052809 3300025937 Bacteria 2444
62 Ga0207704_10299813 3300025938 Bacteria 1231
63 Ga0207711_10030690 3300025941 Bacteria 4534
64 Ga0207689_10154121 3300025942 Bacteria 1894
65 Ga0207667_10133698 3300025949 Bacteria 2555
66 Ga0207703_10000221 3300026035 Bacteria 65906
67 Ga0207678_10002396 3300026067 Bacteria 17029
68 Ga0207702_10039176 3300026078 Bacteria 3970
69 Ga0207641_10000224 3300026088 Bacteria 72770
70 Ga0207641_10394216 3300026088 Bacteria 1328
71 Ga0207676_10000482 3300026095 Bacteria 33559
72 Ga0207676_10220370 3300026095 Bacteria 1689
73 Ga0207675_100015446 3300026118 Bacteria 7122
74 Ga0207683_10012329 3300026121 Bacteria 7296
75 Ga0268266_10144655 3300028379 Bacteria 2136
76 Ga0265334_10015151 3300028573 Unclassified 3207
77 Ga0307515_10054268 3300028794 Bacteria 5888
78 Ga0265332_10009536 3300031238 Bacteria 4332
79 Ga0265320_10000400 3300031240 Bacteria 34938
80 Ga0265331_10040531 3300031250 Unclassified 2265
81 Ga0307509_10000873 3300031507 Bacteria 51992
82 Ga0265314_10084727 3300031711 Unclassified 2080
83 Ga0373950_0000017 3300034818 Bacteria 271422
84 Ga0373936_0000008 3300035113 Bacteria 268505
85 Ga0395899_0000187 3300037312 Bacteria 90916
86 Ga0395899_0087727 3300037312 Bacteria 2257
87 Ga0395900_0001321 3300037418 Bacteria 30057
88 Ga0395900_0184009 3300037418 Bacteria 2121
89 Ga0395898_0003504 3300037466 Bacteria 17510
90 Ga0395898_0358592 3300037466 Bacteria 1390
91 Ga0395905_0013956 3300037471 Bacteria 7683
92 Ga0395901_0000412 3300038443 Bacteria 50385
93 Ga0395901_0112370 3300038443 Bacteria 2861
94 Ga0436361_0749715 3300039447 Bacteria 1885
95 Ga0436362_0026763 3300039453 Bacteria 8902
96 Ga0451837_1172440 3300041494 Bacteria 992
97 Ga0466972_0001043 3300044658 Bacteria 13290
98 Ga0466972_0046539 3300044658 Bacteria 2100
99 Ga0466961_0110708 3300044693 Bacteria 1728
100 Ga0453684_0475530 3300044712 Bacteria 1387
101 Ga0495627_003058 3300046453 Bacteria 7622
102 Ga0495625_0033961 3300046660 Bacteria 3767
103 Ga0495671_0119535 3300046692 Bacteria 1286
104 Ga0495649_0012527 3300046694 Bacteria 4928
105 Ga0501070_0239096 3300049586 Bacteria 1487
106 Ga0501074_0311558 3300049590 Bacteria 1118
107 Ga0501077_0046645 3300049593 Bacteria 2753
108 Ga0501083_0065494 3300049744 Bacteria 2420
109 nmdc:mga04h51_96102_c1 3300050495 Bacteria 1073
110 nmdc:mga0rr50_352186_c1 3300050513 Bacteria 1238
111 nmdc:mga08x19_239658_c1 3300050514 Unclassified 1250
112 Ga0500555_001575 3300053103 Bacteria 6903
113 Ga0500556_0029217 3300053104 Bacteria 1857
114 Ga0500577_0002359 3300053142 Bacteria 4815
115 Ga0501084_0129124 3300054114 Bacteria 2127
116 Ga0105238_10015194
117 JGI25156J39149_1021989
118 Ga0006778J45830_1033896
119 Ga0006770J48903_1019910
120 Ga0006777J48905_1016920
121 rootH1_10072251
122 rootH1_10123795
123 Ga0032354_1087500
124 Ga0070658_10030651
125 Ga0070680_100011308
126 Ga0070689_100000014
127 Ga0070687_100020505
128 Ga0070661_100068976
129 Ga0070674_100068267
130 Ga0070667_100271279
131 Ga0070709_10001207
132 Ga0070663_100001929
133 Ga0070678_100031517
134 Ga0070706_100108970
135 Ga0070707_100025014
136 Ga0070698_100590853
137 Ga0070699_100079190
138 Ga0070679_100011832
139 Ga0070679_100050961
140 Ga0070695_100188060
141 Ga0070693_100132278
142 Ga0070665_100044438
143 Ga0068855_100015382
144 Ga0068855_100096356
145 Ga0068856_100032011
146 Ga0068856_100117036
147 Ga0068856_100163353
148 Ga0068856_100173709
149 Ga0068861_100008464
150 Ga0068863_100000153
151 Ga0068863_100427468
152 Ga0068858_100000187
153 Ga0075366_10221361
154 Ga0105250_10005725
155 Ga0105242_10061486
156 Ga0105248_10052948
157 Ga0105237_10006501
158 Ga0105239_10008282
159 Ga0105239_10009832
160 Ga0157374_10012331
161 Ga0157378_10223375
162 Ga0213876_10002263
163 Ga0209759_1007654
164 Ga0207705_10010662
165 Ga0207684_10148347
166 Ga0207671_10011617
167 Ga0207660_10273497
168 Ga0207662_10032663
169 Ga0207652_10001451
170 Ga0207652_10071753
171 Ga0207646_10110045
172 Ga0207694_10007566
173 Ga0207706_10003512
174 Ga0207686_10043359
175 Ga0207670_10000003
176 Ga0207669_10052809
177 Ga0207704_10299813
178 Ga0207711_10030690
179 Ga0207689_10154121
180 Ga0207667_10133698
181 Ga0207703_10000221
182 Ga0207678_10002396
183 Ga0207702_10039176
184 Ga0207641_10000224
185 Ga0207641_10394216
186 Ga0207676_10000482
187 Ga0207676_10220370
188 Ga0207675_100015446
189 Ga0207683_10012329
190 Ga0268266_10144655
191 Ga0265334_10015151
192 Ga0307515_10054268
193 Ga0265332_10009536
194 Ga0265320_10000400
195 Ga0265331_10040531
196 Ga0307509_10000873
197 Ga0265314_10084727
198 Ga0373950_0000017
199 Ga0373936_0000008
200 Ga0395899_0000187
201 Ga0395899_0087727
202 Ga0395900_0001321
203 Ga0395900_0184009
204 Ga0395898_0003504
205 Ga0395898_0358592
206 Ga0395905_0013956
207 Ga0395901_0000412
208 Ga0395901_0112370
209 Ga0436361_0749715
210 Ga0436362_0026763
211 Ga0451837_1172440
212 Ga0466972_0001043
213 Ga0466972_0046539
214 Ga0466961_0110708
215 Ga0453684_0475530
216 Ga0495627_003058
217 Ga0495625_0033961
218 Ga0495671_0119535
219 Ga0495649_0012527
220 Ga0501070_0239096
221 Ga0501074_0311558
222 Ga0501077_0046645
223 Ga0501083_0065494
224 nmdc:mga04h51_96102_c1
225 nmdc:mga0rr50_352186_c1
226 nmdc:mga08x19_239658_c1
227 Ga0500555_001575
228 Ga0500556_0029217
229 Ga0500577_0002359
230 Ga0501084_0129124

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01740

STAS

STAS domain

209

311

0.97

PF11563

Protoglobin

Protoglobin

39

195

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
6jhk-assembly1.cif.gz_A crystal structure of bacillus subtilis rsbs 0.9483 190 304
6qcm-assembly1.cif.gz_d cryo em structure of the listeria stressosome 0.938 190 306
6qcm-assembly1.cif.gz_I cryo em structure of the listeria stressosome 0.9295 190 306
6jhk-assembly1.cif.gz_A crystal structure of bacillus subtilis rsbs 0.925 190 304
6qcm-assembly1.cif.gz_d cryo em structure of the listeria stressosome 0.9155 190 306
ID Description Score Start End Superfamily
af_I1KA21_504_648_3.30.750.24 Alpha Beta;2-Layer Sandwich;Transcription Regulator spoIIAA;STAS domain 0.8879 197 303 3.30.750.24
1or4A00 Mainly Alpha;Orthogonal Bundle;Globin-like;Globins 0.8871 22 167 1.10.490.10
2w31A00 Mainly Alpha;Orthogonal Bundle;Globin-like;Globins 0.8838 24 170 1.10.490.10
2w31B00 Mainly Alpha;Orthogonal Bundle;Globin-like;Globins 0.8814 25 170 1.10.490.10
2w31A00 Mainly Alpha;Orthogonal Bundle;Globin-like;Globins 0.847 24 170 1.10.490.10
ID Description Score Start End GO Terms
AF-A0A6J4IML5-F1-model_v4 RsbS, negative regulator of sigma-B 0.9733 193 305
AF-A0A017T942-F1-model_v4 RsbR, positive regulator of sigma-B 0.969 191 305
AF-A0A269PR74-F1-model_v4 STAS domain-containing protein 0.9684 191 305
AF-A0A7Z0V3A2-F1-model_v4 deleted 0.9624 196 315
AF-M5RI08-F1-model_v4 deleted 0.9552 190 306

Map