F080476

General Info

Members Datasets Scaffolds Average Seq Length
114 90 110 357

Family's Representative Sequence

Representative Sequence 3300048913|Ga0496110_0085462|Ga0496110_0085462_1589_2794
Length 392
Sequence MRDDELEAEPPDASVPDSRLRQAPLKGRGTATRILHRFESTRREAVEVPPSLDGLFREGRAACTSQGEDNGDPAPETEVTAEHARSILSRNDSPDIPFTWSINPYRGCEHGCIYCYARPTHSYLNLSPGLDFETKLIAKVNAASLLRRELARPGYEPSPINLGAATDPYQPIERSWRLTRGVLEVLDTCQHPFTIVTKSSCVERDLDILVAAAGRRQTYVMISITTLDSALSRKLEPRAAAPQRRLQTVRRLAEAGVPVGVNVAPIIPFLNEPEIEQIVAAAAQAGARSVHYTVLRLPWEVKPLFEEWLSHHVPDRAARIMARVRELRGGKDYDADFRLRMKGEGVWADLIAQRVHKAAARHGLVRRAVELDVACFDRTALHHEAGPQGTLF

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2643221605 Sphingomonas sp. Root710 Isolate Unclassified
3 2643221660 Methylibium sp. Root1272 Isolate Unclassified
4 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
5 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
6 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
7 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
8 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
9 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
10 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
18 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
19 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
20 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
21 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
22 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
23 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
24 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
25 3300012513 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510 Metagenome Rhizosphere
26 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
27 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
28 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
29 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
30 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300027471 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) Metagenome Rhizosphere
43 3300027526 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes) (version 2) Metagenome Rhizosphere
44 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
45 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
46 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
47 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
48 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
49 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
50 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
51 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
52 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
53 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
54 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
55 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
56 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
57 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
58 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
59 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
60 3300039145 Coralloid root microbial communities from Jiquipilas, Chiapas, Mexico - JP6-T1 Metagenome Unclassified
61 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
62 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
63 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
64 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
65 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
66 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
67 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
68 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
69 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
70 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
71 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
72 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
73 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
74 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
75 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
76 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
77 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
78 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
79 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
82 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
84 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
85 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
86 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
87 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
88 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
89 8002869464 Pseudoxanthomonas helianthi 110414 Isolate Unclassified
90 8015556637 Bdellovibrio reynosensis LBG001 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.49
Metatranscriptomes 0
Isolates 3.51

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.63
Nodule 0
Rhizoplane 0.88
Rhizosphere 90.35
Stem 0
Stem Tuber 0
Unclassified 6.14

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_3193904 2162886007 Bacteria 4154
2 Ga0055529_1000080 3300003763 Bacteria 148614
3 Ga0065704_10070501 3300005289 Bacteria 22337
4 Ga0065707_10092061 3300005295 Unclassified 3832
5 Ga0070666_10109792 3300005335 Bacteria 1907
6 Ga0070680_100309628 3300005336 Bacteria 1340
7 Ga0070689_100010720 3300005340 Bacteria 6543
8 Ga0070689_100121831 3300005340 Bacteria 2083
9 Ga0070708_100324804 3300005445 Bacteria 1450
10 Ga0070681_10016077 3300005458 Bacteria 7458
11 Ga0070681_10153168 3300005458 Bacteria 2231
12 Ga0070679_100038127 3300005530 Bacteria 4778
13 Ga0070686_100054150 3300005544 Bacteria 2565
14 Ga0068855_100019676 3300005563 Bacteria 8108
15 Ga0068855_100046795 3300005563 Bacteria 5113
16 Ga0068857_100001544 3300005577 Bacteria 18430
17 Ga0068857_100326345 3300005577 Bacteria 1418
18 Ga0068856_100001820 3300005614 Bacteria 22280
19 Ga0068856_100098409 3300005614 Bacteria 2915
20 Ga0068859_100005737 3300005617 Bacteria 12625
21 Ga0068863_100188460 3300005841 Bacteria 1982
22 Ga0068863_100340063 3300005841 Bacteria 1460
23 Ga0097621_100206126 3300006237 Bacteria 1708
24 Ga0097620_100005737 3300006931 Bacteria 12625
25 Ga0105240_10014759 3300009093 Bacteria 10653
26 Ga0111539_10042475 3300009094 Bacteria 5459
27 Ga0105241_10040252 3300009174 Bacteria 3528
28 Ga0105238_10014657 3300009551 Bacteria 7927
29 Ga0157326_1000139 3300012513 Bacteria 7879
30 Ga0157378_10275869 3300013297 Bacteria 1619
31 Ga0157375_10000025 3300013308 Bacteria 224384
32 Ga0213876_10002236 3300021384 Bacteria 11420
33 Ga0209455_1000037 3300025272 Bacteria 464097
34 Ga0207680_10020334 3300025903 Bacteria 3570
35 Ga0207707_10132068 3300025912 Bacteria 2183
36 Ga0207695_10045580 3300025913 Bacteria 4653
37 Ga0207694_10006770 3300025924 Bacteria 8702
38 Ga0207644_10107013 3300025931 Bacteria 2109
39 Ga0207670_10039521 3300025936 Bacteria 3090
40 Ga0207667_10044426 3300025949 Bacteria 4708
41 Ga0207640_10089422 3300025981 Bacteria 2128
42 Ga0207677_10278011 3300026023 Bacteria 1373
43 Ga0207702_10001443 3300026078 Bacteria 23631
44 Ga0207702_10506509 3300026078 Bacteria 1177
45 Ga0207641_10085562 3300026088 Bacteria 2748
46 Ga0207674_10013040 3300026116 Bacteria 9257
47 Ga0209995_1007694 3300027471 Unclassified 1736
48 Ga0209968_1011019 3300027526 Bacteria 1396
49 Ga0209974_10000897 3300027876 Bacteria 10358
50 Ga0207428_10179698 3300027907 Bacteria 1599
51 Ga0265337_1001880 3300028556 Bacteria 10014
52 Ga0265336_10009878 3300028666 Bacteria 3283
53 Ga0307515_10061971 3300028794 Bacteria 5293
54 Ga0265338_10000701 3300028800 Bacteria 57480
55 Ga0265338_10001968 3300028800 Bacteria 31992
56 Ga0265338_10003664 3300028800 Bacteria 21402
57 Ga0265338_10023597 3300028800 Bacteria 6318
58 Ga0265338_10048917 3300028800 Bacteria 3839
59 Ga0265338_10056840 3300028800 Bacteria 3465
60 Ga0265328_10059832 3300031239 Bacteria 1398
61 Ga0265320_10000296 3300031240 Bacteria 40524
62 Ga0265320_10023181 3300031240 Bacteria 3309
63 Ga0265327_10000210 3300031251 Bacteria 122385
64 Ga0265327_10013203 3300031251 Bacteria 5502
65 Ga0265327_10042527 3300031251 Bacteria 2439
66 Ga0265327_10100635 3300031251 Bacteria 1395
67 Ga0316576_10005183 3300031727 Bacteria 7920
68 Ga0316576_10200299 3300031727 Bacteria 1504
69 Ga0307409_100108481 3300031995 Bacteria 2322
70 Ga0373954_0002075 3300035118 Bacteria 8324
71 Ga0373946_0015975 3300035171 Bacteria 2855
72 Ga0373937_0001956 3300036401 Bacteria 17266
73 Ga0395900_0003866 3300037418 Bacteria 16002
74 Ga0395905_0000099 3300037471 Bacteria 144776
75 Ga0395905_0007018 3300037471 Bacteria 11259
76 Ga0237816_00031 3300039145 Bacteria 8475
77 Ga0436365_1838882 3300039437 Bacteria 55130
78 Ga0439465_0000046 3300041413 Bacteria 25484
79 Ga0439465_0002239 3300041413 Bacteria 6349
80 Ga0439449_0000068 3300042007 Bacteria 32267
81 Ga0453683_0084232 3300044673 Bacteria 1992
82 Ga0451576_0465055 3300045051 Bacteria 1328
83 Ga0495641_0006159 3300046461 Bacteria 7847
84 Ga0495582_0023274 3300046473 Bacteria 3390
85 Ga0495618_0006506 3300046514 Bacteria 7092
86 Ga0495628_0011862 3300046516 Bacteria 7353
87 Ga0495630_0065297 3300046517 Bacteria 2735
88 Ga0495666_0027048 3300046526 Bacteria 2824
89 Ga0495640_0083549 3300046533 Bacteria 2119
90 Ga0495586_0000762 3300046535 Bacteria 18510
91 Ga0495586_0031723 3300046535 Bacteria 2832
92 Ga0495586_0110997 3300046535 Bacteria 1526
93 Ga0495634_0011904 3300046642 Bacteria 6319
94 Ga0495634_0065094 3300046642 Bacteria 2416
95 Ga0495658_0005720 3300046683 Bacteria 6108
96 Ga0495613_0006479 3300046689 Bacteria 8748
97 Ga0495624_0156683 3300046690 Bacteria 1392
98 Ga0496110_0085462 3300048913 Bacteria 2816
99 Ga0501031_0000084 3300049568 Bacteria 50157
100 Ga0501032_0000573 3300049569 Bacteria 29789
101 Ga0501032_0017116 3300049569 Bacteria 5094
102 Ga0501033_0001493 3300049570 Bacteria 20721
103 Ga0501047_0352163 3300049581 Unclassified 1309
104 Ga0501035_0002585 3300049822 Bacteria 17680
105 Ga0501044_0002482 3300049823 Bacteria 21042
106 Ga0501044_0098572 3300049823 Bacteria 2942
107 nmdc:mga05p37_49347_c1 3300050507 Bacteria 5176
108 nmdc:mga08y16_59443_c1 3300050511 Bacteria 3992
109 Ga0495619_0047577 3300053085 Bacteria 2825
110 Ga0500634_0000111 3300053161 Bacteria 30297

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300009094 Ga0111539_10042475 Ga0111539_100424754 308
2 3300050507 nmdc:mga05p37_49347_c1 nmdc:mga05p37_49347_c1_83_1015 308
3 3300050511 nmdc:mga08y16_59443_c1 nmdc:mga08y16_59443_c1_406_1338 308
4 3300013297 Ga0157378_10275869 Ga0157378_102758692 334
5 3300045051 Ga0451576_0465055 Ga0451576_0465055_281_1303 335
6 3300012513 Ga0157326_1000139 Ga0157326_10001393 344
7 3300039145 Ga0237816_00031 Ga0237816_00031_5209_6285 345
8 3300005617 Ga0068859_100005737 Ga0068859_1000057372 347
9 3300006931 Ga0097620_100005737 Ga0097620_1000057372 347
10 3300031251 Ga0265327_10100635 Ga0265327_101006352 347
11 iso_pu_bacteria 8015556637 8015558404 347
12 3300035171 Ga0373946_0015975 Ga0373946_0015975_381_1427 348
13 3300046516 Ga0495628_0011862 Ga0495628_0011862_4443_5489 348
14 3300046535 Ga0495586_0031723 Ga0495586_0031723_1699_2745 348
15 3300046690 Ga0495624_0156683 Ga0495624_0156683_15_1064 348
16 3300053161 Ga0500634_0000111 Ga0500634_0000111_22386_23480 348
17 3300005544 Ga0070686_100054150 Ga0070686_1000541502 349
18 3300005577 Ga0068857_100001544 Ga0068857_1000015446 349
19 3300005841 Ga0068863_100188460 Ga0068863_1001884602 349
20 3300013308 Ga0157375_10000025 Ga0157375_1000002557 349
21 3300025903 Ga0207680_10020334 Ga0207680_100203343 349
22 3300026088 Ga0207641_10085562 Ga0207641_100855621 349
23 3300026116 Ga0207674_10013040 Ga0207674_100130403 349
24 3300027471 Ga0209995_1007694 Ga0209995_10076941 350
25 3300027526 Ga0209968_1011019 Ga0209968_10110191 350
26 3300027876 Ga0209974_10000897 Ga0209974_1000089711 350
27 3300005295 Ga0065707_10092061 Ga0065707_100920612 351
28 3300005336 Ga0070680_100309628 Ga0070680_1003096281 351
29 3300005340 Ga0070689_100010720 Ga0070689_10001072010 351
30 3300005340 Ga0070689_100121831 Ga0070689_1001218312 351
31 3300005445 Ga0070708_100324804 Ga0070708_1003248041 351
32 3300005458 Ga0070681_10016077 Ga0070681_100160775 351
33 3300005458 Ga0070681_10153168 Ga0070681_101531682 351
34 3300005530 Ga0070679_100038127 Ga0070679_1000381271 351
35 3300005563 Ga0068855_100046795 Ga0068855_1000467952 351
36 3300005614 Ga0068856_100098409 Ga0068856_1000984092 351
37 3300009093 Ga0105240_10014759 Ga0105240_100147596 351
38 3300009174 Ga0105241_10040252 Ga0105241_100402525 351
39 3300009551 Ga0105238_10014657 Ga0105238_100146574 351
40 3300025912 Ga0207707_10132068 Ga0207707_101320681 351
41 3300025913 Ga0207695_10045580 Ga0207695_100455802 351
42 3300025924 Ga0207694_10006770 Ga0207694_100067706 351
43 3300025936 Ga0207670_10039521 Ga0207670_100395211 351
44 3300025949 Ga0207667_10044426 Ga0207667_100444262 351
45 3300026078 Ga0207702_10506509 Ga0207702_105065091 351
46 3300027907 Ga0207428_10179698 Ga0207428_101796982 351
47 3300028800 Ga0265338_10001968 Ga0265338_1000196830 351
48 3300028800 Ga0265338_10023597 Ga0265338_100235976 351
49 3300028800 Ga0265338_10048917 Ga0265338_100489173 351
50 3300028800 Ga0265338_10056840 Ga0265338_100568401 351
51 3300031240 Ga0265320_10000296 Ga0265320_1000029638 351
52 3300031251 Ga0265327_10013203 Ga0265327_100132034 351
53 3300031251 Ga0265327_10042527 Ga0265327_100425273 351
54 3300021384 Ga0213876_10002236 Ga0213876_1000223611 352
55 3300031727 Ga0316576_10005183 Ga0316576_100051834 352
56 3300031727 Ga0316576_10200299 Ga0316576_102002991 352
57 3300037418 Ga0395900_0003866 Ga0395900_0003866_840_1913 352
58 3300037471 Ga0395905_0000099 Ga0395905_0000099_139371_140444 352
59 3300039437 Ga0436365_1838882 Ga0436365_1838882_32687_33757 352
60 3300044673 Ga0453683_0084232 Ga0453683_0084232_60_1124 352
61 3300046461 Ga0495641_0006159 Ga0495641_0006159_4871_5935 352
62 3300046473 Ga0495582_0023274 Ga0495582_0023274_829_1893 352
63 3300046526 Ga0495666_0027048 Ga0495666_0027048_292_1356 352
64 3300046535 Ga0495586_0110997 Ga0495586_0110997_435_1499 352
65 3300046642 Ga0495634_0065094 Ga0495634_0065094_127_1191 352
66 3300046683 Ga0495658_0005720 Ga0495658_0005720_370_1434 352
67 3300005614 Ga0068856_100001820 Ga0068856_10000182019 353
68 3300026078 Ga0207702_10001443 Ga0207702_1000144319 353
69 3300028556 Ga0265337_1001880 Ga0265337_100188010 353
70 3300031240 Ga0265320_10023181 Ga0265320_100231814 353
71 iso_pu_bacteria 2643221605 2644039747 353
72 3300053085 Ga0495619_0047577 Ga0495619_0047577_197_1282 354
73 3300035118 Ga0373954_0002075 Ga0373954_0002075_3588_4664 355
74 3300036401 Ga0373937_0001956 Ga0373937_0001956_4545_5621 355
75 3300046514 Ga0495618_0006506 Ga0495618_0006506_4298_5374 355
76 3300046517 Ga0495630_0065297 Ga0495630_0065297_304_1380 355
77 3300046533 Ga0495640_0083549 Ga0495640_0083549_1004_2080 355
78 3300046535 Ga0495586_0000762 Ga0495586_0000762_14149_15225 355
79 3300046642 Ga0495634_0011904 Ga0495634_0011904_3500_4576 355
80 3300046689 Ga0495613_0006479 Ga0495613_0006479_4301_5377 355
81 3300005563 Ga0068855_100019676 Ga0068855_1000196765 356
82 3300005577 Ga0068857_100326345 Ga0068857_1003263452 356
83 3300005841 Ga0068863_100340063 Ga0068863_1003400632 356
84 3300025981 Ga0207640_10089422 Ga0207640_100894221 356
85 3300028800 Ga0265338_10000701 Ga0265338_1000070136 356
86 3300049568 Ga0501031_0000084 Ga0501031_0000084_34113_35192 356
87 3300049569 Ga0501032_0000573 Ga0501032_0000573_19809_20888 356
88 3300049569 Ga0501032_0017116 Ga0501032_0017116_561_1652 356
89 3300049570 Ga0501033_0001493 Ga0501033_0001493_11639_12718 356
90 3300049581 Ga0501047_0352163 Ga0501047_0352163_57_1136 356
91 3300049822 Ga0501035_0002585 Ga0501035_0002585_3753_4832 356
92 3300049823 Ga0501044_0002482 Ga0501044_0002482_11970_13049 356
93 3300049823 Ga0501044_0098572 Ga0501044_0098572_199_1278 356
94 3300028666 Ga0265336_10009878 Ga0265336_100098781 357
95 3300028794 Ga0307515_10061971 Ga0307515_100619713 357
96 3300028800 Ga0265338_10003664 Ga0265338_1000366416 357
97 3300031239 Ga0265328_10059832 Ga0265328_100598322 357
98 3300031251 Ga0265327_10000210 Ga0265327_1000021018 357
99 3300003763 Ga0055529_1000080 Ga0055529_1000080119 358
100 3300025272 Ga0209455_1000037 Ga0209455_100003726 358
101 3300005335 Ga0070666_10109792 Ga0070666_101097921 360
102 3300006237 Ga0097621_100206126 Ga0097621_1002061262 360
103 3300025931 Ga0207644_10107013 Ga0207644_101070131 360
104 3300031995 Ga0307409_100108481 Ga0307409_1001084812 360
105 3300037471 Ga0395905_0007018 Ga0395905_0007018_1957_3090 360
106 3300048913 Ga0496110_0085462 Ga0496110_0085462_1589_2794 360
107 iso_pu_bacteria 2643221660 2644341383 360
108 2162886007 SwRhRL2b_contig_3193904 SwRhRL2b_0887.00000160 361
109 3300005289 Ga0065704_10070501 Ga0065704_1007050120 361
110 3300026023 Ga0207677_10278011 Ga0207677_102780112 361
111 3300041413 Ga0439465_0000046 Ga0439465_0000046_10522_11610 361
112 3300041413 Ga0439465_0002239 Ga0439465_0002239_2492_3580 361
113 3300042007 Ga0439449_0000068 Ga0439449_0000068_11948_13036 361
114 iso_pu_bacteria 8002869464 8002870653 361

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04055

Radical_SAM

Radical SAM superfamily

102

282

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
5v1q-assembly1.cif.gz_A crystal structure of streptococcus suis suib 0.7521 130 337
4fhf-assembly1.cif.gz_A spore photoproduct lyase c140a mutant with dinucleoside spore photoproduct 0.7368 50 337
4rh1-assembly1.cif.gz_A spore photoproduct lyase c140a/s76c mutant with bound adomet and dinucleoside spore photoproduct 0.7353 46 337
1tv8-assembly1.cif.gz_A structure of moaa in complex with s-adenosylmethionine 0.7236 47 267
4fhg-assembly1.cif.gz_A spore photoproduct lyase c140s mutant 0.7137 31 337
ID Description Score Start End Superfamily
af_P9WL79_106_315_3.80.30.30 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme; 0.9034 113 332 3.80.30.30
af_P9WL79_106_315_3.80.30.30 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme; 0.8952 113 332 3.80.30.30
af_Q58096_62_257_3.80.30.30 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme; 0.8463 110 337 3.80.30.30
af_Q58096_62_257_3.80.30.30 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme; 0.8267 110 337 3.80.30.30
af_P0ADW6_41_234_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.7625 125 270 3.80.30.20
ID Description Score Start End GO Terms
AF-A0A426GCG6-F1-model_v4 Radical SAM protein 0.9962 162 258 GO:0003824
GO:0046872
GO:0051536
AF-A0A531LYT9-F1-model_v4 Radical SAM protein 0.9943 131 267 GO:0003824
GO:0046872
GO:0051536
AF-A0A6L2NXK3-F1-model_v4 carbonic anhydrase (EC 4.2.1.1) 0.993 97 263 GO:0004089
GO:0005737
GO:0008270
GO:0015976
GO:0051536
AF-A0A537RJT8-F1-model_v4 Radical SAM protein 0.9909 144 267 GO:0003824
GO:0046872
GO:0051536
AF-T0YVG5-F1-model_v4 Radical SAM domain-containing protein 0.9881 117 316 GO:0003824
GO:0046872
GO:0051536

Feature Viewer

pLDDT pTM Quality
82.16 0.82 High
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Predicted Structure (AlphaFold2)

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