F073933

General Info

Members Datasets Scaffolds Average Seq Length
113 96 226 276

Family's Representative Sequence

Representative Sequence 3300013297|Ga0157378_10105105|Ga0157378_101051052
Length 311
Sequence MPELPEVETVRRTLAPAVGGRISSVWTSGMGLHMARKPPAARLRKLIGATITAVRRHGKYLLLDTDHVMSVLVHLGMTGRVRIQAKAEPRAAHTHVVLGLGERELRFSDARRFGQFDVVVRGKEREHPALALLGPDALDDALDAGALLATARTKRTSLKAFVLDQSVMAGVGNIYASEALWRAKLRPTTRTHKLTAVTAKRLAAAIREVLERALDNGGTTLSDFVDADGTAGENADYLWVYGRSGEPCLRCKAPIKRSVLQGRATTHCPACQTPYAVPALGVAVRWFARGPTDRIVWRRKTYEGRRPSSPE

Samples

Sample ID Description Type Environment
1 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
2 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
3 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
4 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
5 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
6 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
7 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
8 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
9 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
10 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
11 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
12 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
13 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
14 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
15 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
16 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
17 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
18 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
19 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
20 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
28 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
29 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
30 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
31 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
32 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
33 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
34 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
35 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
36 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
37 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
38 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
39 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
40 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
41 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
42 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
43 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
44 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
45 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
46 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
47 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
48 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
49 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
50 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
51 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
52 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
53 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
54 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
55 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
56 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
57 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
58 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
59 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
60 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
61 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
62 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
63 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
64 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
65 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
66 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
67 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
68 3300049654 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_A_0_control Metagenome Rhizosphere
69 3300049656 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_B_0_drought Metagenome Rhizosphere
70 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
71 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
72 3300049667 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_B_2_control Metagenome Rhizosphere
73 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
74 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
75 3300049706 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_B_2_control Metagenome Rhizosphere
76 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
77 3300049760 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F12_A_4_control Metagenome Rhizosphere
78 3300049779 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C22_A_7_drought Metagenome Rhizosphere
79 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
80 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
81 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
82 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
83 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
84 3300053102 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 endosphere Metagenome Endosphere
85 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
86 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
87 3300053120 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere Metagenome Endosphere
88 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
89 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
90 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
91 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
92 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
93 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
94 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
95 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
96 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.16
Nodule 0
Rhizoplane 1.77
Rhizosphere 75.22
Stem 0
Stem Tuber 0
Unclassified 11.5

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157378_10105105 3300013297 Bacteria 2581
2 Ga0070670_100197395 3300005331 Bacteria 1748
3 Ga0070689_100015523 3300005340 Bacteria 5556
4 Ga0070689_100268650 3300005340 Bacteria 1411
5 Ga0070668_100459599 3300005347 Bacteria 1096
6 Ga0070706_100038149 3300005467 Bacteria 4436
7 Ga0070706_100159348 3300005467 Bacteria 2107
8 Ga0070698_100004728 3300005471 Bacteria 14951
9 Ga0070698_100005222 3300005471 Bacteria 14202
10 Ga0070696_100042358 3300005546 Bacteria 3148
11 Ga0070665_100017455 3300005548 Bacteria 7206
12 Ga0070704_100573062 3300005549 Unclassified 989
13 Ga0068864_100141407 3300005618 Bacteria 2171
14 Ga0068866_10068078 3300005718 Bacteria 1871
15 Ga0068863_100104192 3300005841 Bacteria 2698
16 Ga0070717_10037004 3300006028 Bacteria 3961
17 Ga0097621_100466294 3300006237 Bacteria 1140
18 Ga0075431_100142205 3300006847 Bacteria 2473
19 Ga0105240_10006584 3300009093 Bacteria 17054
20 Ga0111539_10918963 3300009094 Bacteria 1018
21 Ga0105249_10119530 3300009553 Bacteria 2502
22 Ga0105239_10015030 3300010375 Bacteria 8581
23 Ga0207642_10056069 3300025899 Bacteria 1806
24 Ga0207684_10053304 3300025910 Bacteria 3434
25 Ga0207695_10020006 3300025913 Bacteria 7682
26 Ga0207670_10007027 3300025936 Bacteria 6267
27 Ga0207670_10073472 3300025936 Bacteria 2371
28 Ga0207641_10090023 3300026088 Bacteria 2682
29 Ga0207676_10405347 3300026095 Bacteria 1275
30 Ga0268266_10009666 3300028379 Bacteria 8477
31 Ga0265334_10030609 3300028573 Bacteria 2153
32 Ga0307517_10088006 3300028786 Bacteria 2573
33 Ga0265320_10075584 3300031240 Unclassified 1580
34 Ga0265340_10002279 3300031247 Bacteria 10963
35 Ga0307513_10028883 3300031456 Bacteria 6332
36 Ga0307509_10010771 3300031507 Bacteria 11151
37 Ga0307509_10017111 3300031507 Bacteria 8357
38 Ga0307509_10072847 3300031507 Bacteria 3578
39 Ga0307508_10098495 3300031616 Bacteria 2517
40 Ga0316576_10008397 3300031727 Bacteria 6582
41 Ga0316578_10002113 3300031728 Bacteria 8525
42 Ga0307516_10237029 3300031730 Bacteria 1525
43 Ga0307507_10056427 3300033179 Bacteria 3712
44 Ga0373949_0000215 3300035090 Bacteria 21866
45 Ga0373936_0000015 3300035113 Bacteria 200263
46 Ga0373941_0004221 3300035115 Bacteria 3304
47 Ga0373956_0076218 3300035119 Bacteria 1534
48 Ga0373961_0000103 3300035241 Bacteria 44859
49 Ga0373933_0227182 3300035724 Bacteria 1198
50 Ga0373937_0098520 3300036401 Unclassified 2711
51 Ga0316582_0021083 3300036647 Bacteria 3843
52 Ga0316584_0079341 3300036712 Bacteria 2459
53 Ga0316584_0132799 3300036712 Unclassified 1859
54 Ga0395905_0260544 3300037471 Bacteria 1619
55 Ga0400490_41903 3300038726 Bacteria 13744
56 Ga0400489_37762 3300039093 Bacteria 1519
57 Ga0436360_0603749 3300039438 Bacteria 1184
58 Ga0451793_0388447 3300041452 Bacteria 1888
59 Ga0451807_1198815 3300041486 Bacteria 2772
60 Ga0451577_0293837 3300042876 Bacteria 1472
61 Ga0453683_0006793 3300044673 Bacteria 7816
62 Ga0453684_0001570 3300044712 Bacteria 63345
63 Ga0453684_0030084 3300044712 Bacteria 7683
64 Ga0453684_0044272 3300044712 Bacteria 5960
65 Ga0453684_0057561 3300044712 Bacteria 5029
66 Ga0453684_0137349 3300044712 Bacteria 2924
67 Ga0453684_0263802 3300044712 Bacteria 1972
68 Ga0453684_0346695 3300044712 Bacteria 1675
69 Ga0451576_0030446 3300045051 Bacteria 5768
70 Ga0451576_0293306 3300045051 Bacteria 1700
71 Ga0451576_0333547 3300045051 Bacteria 1587
72 Ga0451576_0553124 3300045051 Bacteria 1209
73 Ga0466967_0536337 3300045976 Unclassified 1151
74 Ga0495664_0147847 3300046477 Bacteria 1425
75 Ga0495596_0062212 3300046500 Bacteria 1453
76 Ga0495630_0139081 3300046517 Unclassified 1846
77 Ga0495586_0019564 3300046535 Bacteria 3606
78 Ga0495622_0038669 3300046557 Bacteria 2222
79 Ga0495649_0174131 3300046694 Bacteria 1125
80 Ga0501036_0178624 3300049572 Bacteria 1787
81 Ga0501041_0371638 3300049577 Bacteria 904
82 Ga0501047_0281205 3300049581 Bacteria 1509
83 Ga0501074_0035205 3300049590 Unclassified 3627
84 Ga0501207_009810 3300049654 Unclassified 1404
85 Ga0501209_014184 3300049656 Unclassified 1744
86 Ga0501217_018520 3300049661 Bacteria 1618
87 Ga0501227_000083 3300049665 Bacteria 15031
88 Ga0501230_002466 3300049667 Bacteria 2367
89 Ga0501233_009592 3300049668 Bacteria 1890
90 Ga0501235_023112 3300049669 Unclassified 1385
91 Ga0501229_003855 3300049706 Unclassified 1812
92 Ga0501083_0000298 3300049744 Bacteria 31234
93 Ga0501263_001228 3300049760 Bacteria 2351
94 Ga0501283_027408 3300049779 Unclassified 942
95 nmdc:mga06r32_528072_c1 3300050510 Bacteria 1155
96 Ga0500578_0050300 3300053086 Bacteria 2673
97 Ga0500583_0028263 3300053092 Bacteria 2430
98 Ga0500566_0000256 3300053094 Bacteria 28676
99 Ga0500566_0020955 3300053094 Bacteria 3844
100 Ga0500640_001918 3300053095 Bacteria 6635
101 Ga0500554_002362 3300053102 Bacteria 3702
102 Ga0500572_014394 3300053111 Bacteria 1976
103 Ga0500595_002433 3300053119 Bacteria 9277
104 Ga0500597_082414 3300053120 Bacteria 1396
105 Ga0500614_000714 3300053123 Bacteria 8483
106 Ga0500642_0042168 3300053130 Bacteria 1977
107 Ga0500559_0005269 3300053136 Bacteria 5961
108 Ga0500622_0091470 3300053156 Bacteria 1509
109 Ga0500639_081592 3300053163 Unclassified 1628
110 Ga0500637_0115943 3300053178 Bacteria 1554
111 Ga0501084_0266434 3300054114 Bacteria 1446
112 Ga0500661_015408 3300055283 Bacteria 1371
113 Ga0501082_0036268 3300060353 Bacteria 4248
114 Ga0157378_10105105
115 Ga0070670_100197395
116 Ga0070689_100015523
117 Ga0070689_100268650
118 Ga0070668_100459599
119 Ga0070706_100038149
120 Ga0070706_100159348
121 Ga0070698_100004728
122 Ga0070698_100005222
123 Ga0070696_100042358
124 Ga0070665_100017455
125 Ga0070704_100573062
126 Ga0068864_100141407
127 Ga0068866_10068078
128 Ga0068863_100104192
129 Ga0070717_10037004
130 Ga0097621_100466294
131 Ga0075431_100142205
132 Ga0105240_10006584
133 Ga0111539_10918963
134 Ga0105249_10119530
135 Ga0105239_10015030
136 Ga0207642_10056069
137 Ga0207684_10053304
138 Ga0207695_10020006
139 Ga0207670_10007027
140 Ga0207670_10073472
141 Ga0207641_10090023
142 Ga0207676_10405347
143 Ga0268266_10009666
144 Ga0265334_10030609
145 Ga0307517_10088006
146 Ga0265320_10075584
147 Ga0265340_10002279
148 Ga0307513_10028883
149 Ga0307509_10010771
150 Ga0307509_10017111
151 Ga0307509_10072847
152 Ga0307508_10098495
153 Ga0316576_10008397
154 Ga0316578_10002113
155 Ga0307516_10237029
156 Ga0307507_10056427
157 Ga0373949_0000215
158 Ga0373936_0000015
159 Ga0373941_0004221
160 Ga0373956_0076218
161 Ga0373961_0000103
162 Ga0373933_0227182
163 Ga0373937_0098520
164 Ga0316582_0021083
165 Ga0316584_0079341
166 Ga0316584_0132799
167 Ga0395905_0260544
168 Ga0400490_41903
169 Ga0400489_37762
170 Ga0436360_0603749
171 Ga0451793_0388447
172 Ga0451807_1198815
173 Ga0451577_0293837
174 Ga0453683_0006793
175 Ga0453684_0001570
176 Ga0453684_0030084
177 Ga0453684_0044272
178 Ga0453684_0057561
179 Ga0453684_0137349
180 Ga0453684_0263802
181 Ga0453684_0346695
182 Ga0451576_0030446
183 Ga0451576_0293306
184 Ga0451576_0333547
185 Ga0451576_0553124
186 Ga0466967_0536337
187 Ga0495664_0147847
188 Ga0495596_0062212
189 Ga0495630_0139081
190 Ga0495586_0019564
191 Ga0495622_0038669
192 Ga0495649_0174131
193 Ga0501036_0178624
194 Ga0501041_0371638
195 Ga0501047_0281205
196 Ga0501074_0035205
197 Ga0501207_009810
198 Ga0501209_014184
199 Ga0501217_018520
200 Ga0501227_000083
201 Ga0501230_002466
202 Ga0501233_009592
203 Ga0501235_023112
204 Ga0501229_003855
205 Ga0501083_0000298
206 Ga0501263_001228
207 Ga0501283_027408
208 nmdc:mga06r32_528072_c1
209 Ga0500578_0050300
210 Ga0500583_0028263
211 Ga0500566_0000256
212 Ga0500566_0020955
213 Ga0500640_001918
214 Ga0500554_002362
215 Ga0500572_014394
216 Ga0500595_002433
217 Ga0500597_082414
218 Ga0500614_000714
219 Ga0500642_0042168
220 Ga0500559_0005269
221 Ga0500622_0091470
222 Ga0500639_081592
223 Ga0500637_0115943
224 Ga0501084_0266434
225 Ga0500661_015408
226 Ga0501082_0036268

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06827

zf-FPG_IleRS

Zinc finger found in FPG and IleRS

245

274

0.97

PF06831

H2TH

Formamidopyrimidine-DNA glycosylase H2TH domain

133

225

0.97

PF01149

Fapy_DNA_glyco

Formamidopyrimidine-DNA glycosylase N-terminal domain

1

116

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
3gq4-assembly1.cif.gz_A sequence-matched mutm lesion recognition complex 5 (lrc5) 0.9156 2 266
3jr5-assembly1.cif.gz_A mutm lesion recognition control complex with n174c crosslinking site 0.9145 2 266
1r2z-assembly1.cif.gz_A mutm (fpg) bound to 5,6-dihydrouracil (dhu) containing dna 0.9132 2 266
6fl1-assembly1.cif.gz_A crystal structure of the complex between the lactococcus lactis fpg mutant t221p and a fapy-dg containing dna 0.9059 2 267
3gq4-assembly1.cif.gz_A sequence-matched mutm lesion recognition complex 5 (lrc5) 0.9058 2 266
ID Description Score Start End Superfamily
af_P9WNC3_146_285_1.10.8.50 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9391 136 266 1.10.8.50
1ee8B02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9088 133 261 1.10.8.50
1k82C02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.8908 133 266 1.10.8.50
1l1tA01 Alpha Beta;Alpha-Beta Barrel;N-terminal domain of MutM-like DNA repair proteins;MutM-like, N-terminal 0.8884 2 131 3.20.190.10
1k82C02 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.8844 133 266 1.10.8.50
ID Description Score Start End GO Terms
AF-A0A831QLM9-F1-model_v4 Bifunctional DNA-formamidopyrimidine glycosylase/DNA-(Apurinic or apyrimidinic site) lyase 0.975 156 265 GO:0000703
GO:0003684
GO:0003906
GO:0006284
GO:0008270
GO:0016829
AF-A0A6P0QXZ8-F1-model_v4 deleted 0.9746 152 265
AF-A0A2D7S5B4-F1-model_v4 DNA-formamidopyrimidine glycosylase 0.9746 167 266 GO:0003684
GO:0003906
GO:0006284
GO:0008270
GO:0034039
AF-A0A1Q9PDC5-F1-model_v4 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) 0.9695 170 266 GO:0003677
GO:0006284
GO:0008270
GO:0008534
GO:0140078
AF-A0A2J6X0Q2-F1-model_v4 Formamidopyrimidine-DNA glycosylase 0.9692 148 265 GO:0003684
GO:0003906
GO:0006284
GO:0008270
GO:0034039

Map