F070375

General Info

Members Datasets Scaffolds Average Seq Length
112 32 224 396

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0042539|Ga0453684_0042539_43_1284
Length 413
Sequence VNGNPDQLKGYEMKSPYRAVKVTEDVWWVGAIDWNIREFHGYQTQRGSTYNAYLVMADKVTLIDTVKAPFRQEMMARIADVIDPARIDYIVSDHSEMDHSGCLPEVIADVKPEKVFASQAGAKALKELFPSASLEITAVRDGETLSLGNRTLAFMETRMLHWPDSMFAYLMEEELLFSQDAFGMHYASLERFDDQVDPAILAYEAATYYANIILPYSPLVLKLLEKVTAAGLAFKIIAPDHGPIWRRDIGGIIASYGRWAAQKPTAKAVVVYATMWHSTEKMARAISEGLAAGGLGVKFMSLDEVHRSDVVYELLGAGALAIGSPTLNNNMLPQMADILTYLRGLKPRNLVGAAFGSYGWSGEAVGQIEAILAEMKVERAGEGIRVKNVPDEEMLVRCYELGLQMAEKVKGRL

Samples

Sample ID Description Type Environment
1 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
2 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
3 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
4 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
5 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
6 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
7 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
8 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
9 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
10 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
11 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
12 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
13 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
14 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
15 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
16 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
17 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
18 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
19 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
20 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
21 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
22 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
23 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
24 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
25 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
26 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
27 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
28 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
29 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
30 2740891818 Desulfofaba hansenii DSM 12642 Isolate Unclassified
31 8007371054 Clostridium sp. YIM B02515 Isolate Unclassified
32 8007375930 Clostridium sp. YIM B02565 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 87.5
Metatranscriptomes 8.93
Isolates 3.57

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 3.57
Rhizoplane 0
Rhizosphere 83.93
Stem 0
Stem Tuber 0
Unclassified 13.39

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0453684_0042539 3300044712 Bacteria 6124
2 Ga0079104_1000685 3300006946 Bacteria 31302
3 Ga0079104_1003506 3300006946 Bacteria 7243
4 Ga0079104_1003526 3300006946 Bacteria 7206
5 Ga0209281_1001406 3300027111 Bacteria 14494
6 Ga0265316_10037209 3300031344 Bacteria 3930
7 Ga0265316_10047864 3300031344 Unclassified 3380
8 Ga0316575_10039955 3300031665 Unclassified 1853
9 Ga0316579_10002831 3300031691 Bacteria 6637
10 Ga0316579_10014364 3300031691 Bacteria 3422
11 Ga0316579_10020768 3300031691 Bacteria 2919
12 Ga0316576_10071520 3300031727 Unclassified 2559
13 Ga0316576_10109651 3300031727 Unclassified 2068
14 Ga0316576_10123949 3300031727 Bacteria 1941
15 Ga0316576_10152048 3300031727 Unclassified 1744
16 Ga0316578_10000031 3300031728 Bacteria 28598
17 Ga0316578_10005305 3300031728 Bacteria 6231
18 Ga0316578_10008225 3300031728 Bacteria 5293
19 Ga0316578_10019883 3300031728 Unclassified 3703
20 Ga0316578_10155678 3300031728 Unclassified 1377
21 Ga0316578_10175094 3300031728 Unclassified 1293
22 Ga0316577_10012040 3300031733 Bacteria 4702
23 Ga0316577_10014459 3300031733 Bacteria 4332
24 Ga0316577_10025952 3300031733 Bacteria 3260
25 Ga0316577_10041521 3300031733 Bacteria 2574
26 Ga0316577_10060835 3300031733 Bacteria 2107
27 Ga0316577_10085427 3300031733 Bacteria 1766
28 Ga0316583_10005564 3300032133 Bacteria 4521
29 Ga0316585_10001178 3300032137 Bacteria 6825
30 Ga0316585_10017903 3300032137 Unclassified 2145
31 Ga0316593_10007310 3300032168 Bacteria 3027
32 Ga0316593_10009383 3300032168 Bacteria 2760
33 Ga0316593_10017423 3300032168 Bacteria 2191
34 Ga0316593_10021551 3300032168 Bacteria 2016
35 Ga0316593_10022584 3300032168 Bacteria 1978
36 Ga0316593_10026350 3300032168 Unclassified 1858
37 Ga0316593_10043845 3300032168 Unclassified 1495
38 Ga0316593_10053561 3300032168 Bacteria 1367
39 Ga0316592_1000323 3300033524 Bacteria 6240
40 Ga0316588_1003158 3300033528 Unclassified 2966
41 Ga0316574_0000089 3300035398 Bacteria 26124
42 Ga0316574_0002313 3300035398 Bacteria 9500
43 Ga0316574_0003749 3300035398 Bacteria 7878
44 Ga0316574_0031636 3300035398 Bacteria 3210
45 Ga0316574_0053239 3300035398 Bacteria 2526
46 Ga0316574_0083763 3300035398 Bacteria 2028
47 Ga0316582_0003106 3300036647 Bacteria 8039
48 Ga0316582_0008851 3300036647 Bacteria 5428
49 Ga0316582_0014997 3300036647 Bacteria 4417
50 Ga0316582_0023172 3300036647 Bacteria 3697
51 Ga0316582_0023696 3300036647 Bacteria 3662
52 Ga0316582_0025524 3300036647 Bacteria 3549
53 Ga0316582_0043791 3300036647 Bacteria 2810
54 Ga0316582_0064416 3300036647 Bacteria 2358
55 Ga0316582_0081946 3300036647 Bacteria 2109
56 Ga0316582_0154449 3300036647 Bacteria 1553
57 Ga0316584_0000143 3300036712 Bacteria 32105
58 Ga0316584_0000761 3300036712 Bacteria 17973
59 Ga0316584_0003202 3300036712 Bacteria 10596
60 Ga0316584_0011270 3300036712 Bacteria 6277
61 Ga0316584_0045701 3300036712 Bacteria 3269
62 Ga0316584_0064394 3300036712 Bacteria 2745
63 Ga0316584_0074759 3300036712 Unclassified 2540
64 Ga0316581_0026224 3300037588 Bacteria 1738
65 Ga0316581_0033062 3300037588 Unclassified 1561
66 Ga0316581_0034866 3300037588 Bacteria 1524
67 Ga0400490_55660 3300038726 Bacteria 22979
68 Ga0400488_19387 3300038741 Bacteria 10526
69 Ga0400483_010960 3300039062 Bacteria 7568
70 Ga0400483_018275 3300039062 Bacteria 7290
71 Ga0400483_171337 3300039062 Bacteria 14586
72 Ga0400483_188185 3300039062 Unclassified 1422
73 Ga0400489_28023 3300039093 Bacteria 8665
74 Ga0400489_31693 3300039093 Bacteria 4479
75 Ga0400489_82844 3300039093 Bacteria 2279
76 Ga0451577_0000527 3300042876 Bacteria 63726
77 Ga0451577_0023745 3300042876 Bacteria 5588
78 Ga0451577_0038310 3300042876 Bacteria 4312
79 Ga0453683_0005093 3300044673 Bacteria 9221
80 Ga0453683_0063892 3300044673 Bacteria 2301
81 Ga0453684_0000107 3300044712 Bacteria 362864
82 Ga0453684_0000290 3300044712 Archaea 215468
83 Ga0453684_0000391 3300044712 Bacteria 180292
84 Ga0453684_0000431 3300044712 Bacteria 171111
85 Ga0453684_0002023 3300044712 Bacteria 51825
86 Ga0453684_0004364 3300044712 Bacteria 30005
87 Ga0453684_0004431 3300044712 Bacteria 29651
88 Ga0453684_0007198 3300044712 Bacteria 20643
89 Ga0453684_0007791 3300044712 Bacteria 19538
90 Ga0453684_0011790 3300044712 Bacteria 14569
91 Ga0453684_0015409 3300044712 Bacteria 12101
92 Ga0453684_0021309 3300044712 Bacteria 9693
93 Ga0453684_0034093 3300044712 Bacteria 7076
94 Ga0453684_0041026 3300044712 Bacteria 6268
95 Ga0453684_0096690 3300044712 Archaea 3627
96 Ga0453684_0114889 3300044712 Bacteria 3263
97 Ga0453684_0174074 3300044712 Bacteria 2533
98 Ga0453684_0233864 3300044712 Bacteria 2120
99 Ga0453684_0317648 3300044712 Bacteria 1765
100 Ga0453684_0478305 3300044712 Bacteria 1382
101 Ga0451576_0000035 3300045051 Bacteria 379076
102 Ga0451576_0000238 3300045051 Bacteria 134437
103 Ga0451576_0028649 3300045051 Bacteria 5962
104 Ga0495620_0010645 3300046515 Bacteria 4843
105 Ga0495654_0008648 3300046530 Bacteria 5611
106 Ga0495654_0019765 3300046530 Bacteria 3518
107 Ga0495672_0001294 3300047320 Bacteria 24963
108 Ga0496122_0000276 3300048925 Bacteria 114526
109 2740994773 2740891818 Bacteria 6711283
110 8007372884 8007371054 Bacteria 4849201
111 8007376544 8007375930 Bacteria 4080554
112 8007379931 8007375930 Bacteria 4080554
113 Ga0453684_0042539
114 Ga0079104_1000685
115 Ga0079104_1003506
116 Ga0079104_1003526
117 Ga0209281_1001406
118 Ga0265316_10037209
119 Ga0265316_10047864
120 Ga0316575_10039955
121 Ga0316579_10002831
122 Ga0316579_10014364
123 Ga0316579_10020768
124 Ga0316576_10071520
125 Ga0316576_10109651
126 Ga0316576_10123949
127 Ga0316576_10152048
128 Ga0316578_10000031
129 Ga0316578_10005305
130 Ga0316578_10008225
131 Ga0316578_10019883
132 Ga0316578_10155678
133 Ga0316578_10175094
134 Ga0316577_10012040
135 Ga0316577_10014459
136 Ga0316577_10025952
137 Ga0316577_10041521
138 Ga0316577_10060835
139 Ga0316577_10085427
140 Ga0316583_10005564
141 Ga0316585_10001178
142 Ga0316585_10017903
143 Ga0316593_10007310
144 Ga0316593_10009383
145 Ga0316593_10017423
146 Ga0316593_10021551
147 Ga0316593_10022584
148 Ga0316593_10026350
149 Ga0316593_10043845
150 Ga0316593_10053561
151 Ga0316592_1000323
152 Ga0316588_1003158
153 Ga0316574_0000089
154 Ga0316574_0002313
155 Ga0316574_0003749
156 Ga0316574_0031636
157 Ga0316574_0053239
158 Ga0316574_0083763
159 Ga0316582_0003106
160 Ga0316582_0008851
161 Ga0316582_0014997
162 Ga0316582_0023172
163 Ga0316582_0023696
164 Ga0316582_0025524
165 Ga0316582_0043791
166 Ga0316582_0064416
167 Ga0316582_0081946
168 Ga0316582_0154449
169 Ga0316584_0000143
170 Ga0316584_0000761
171 Ga0316584_0003202
172 Ga0316584_0011270
173 Ga0316584_0045701
174 Ga0316584_0064394
175 Ga0316584_0074759
176 Ga0316581_0026224
177 Ga0316581_0033062
178 Ga0316581_0034866
179 Ga0400490_55660
180 Ga0400488_19387
181 Ga0400483_010960
182 Ga0400483_018275
183 Ga0400483_171337
184 Ga0400483_188185
185 Ga0400489_28023
186 Ga0400489_31693
187 Ga0400489_82844
188 Ga0451577_0000527
189 Ga0451577_0023745
190 Ga0451577_0038310
191 Ga0453683_0005093
192 Ga0453683_0063892
193 Ga0453684_0000107
194 Ga0453684_0000290
195 Ga0453684_0000391
196 Ga0453684_0000431
197 Ga0453684_0002023
198 Ga0453684_0004364
199 Ga0453684_0004431
200 Ga0453684_0007198
201 Ga0453684_0007791
202 Ga0453684_0011790
203 Ga0453684_0015409
204 Ga0453684_0021309
205 Ga0453684_0034093
206 Ga0453684_0041026
207 Ga0453684_0096690
208 Ga0453684_0114889
209 Ga0453684_0174074
210 Ga0453684_0233864
211 Ga0453684_0317648
212 Ga0453684_0478305
213 Ga0451576_0000035
214 Ga0451576_0000238
215 Ga0451576_0028649
216 Ga0495620_0010645
217 Ga0495654_0008648
218 Ga0495654_0019765
219 Ga0495672_0001294
220 Ga0496122_0000276
221 2740994773
222 8007372884
223 8007376544
224 8007379931

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00258

Flavodoxin_1

Flavodoxin

270

402

0.89

PF19583

ODP

ODP family beta lactamase

49

242

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
7r2o-assembly1.cif.gz_A crystal structure of a flavodiiron protein s262y mutant in the oxidized state from escherichia coli 0.9854 3 394
7r0f-assembly1.cif.gz_A crystal structure of a flavodiiron protein d52k mutant in the oxidized state from escherichia coli 0.9852 1 394
7r2p-assembly1.cif.gz_A crystal structure of a flavodiiron protein d52k/s262y mutant in the oxidized state from escherichia coli 0.9849 3 394
4d02-assembly1.cif.gz_A the crystallographic structure of flavorubredoxin from escherichia coli 0.9824 3 394
7r0f-assembly1.cif.gz_A crystal structure of a flavodiiron protein d52k mutant in the oxidized state from escherichia coli 0.9803 1 394
ID Description Score Start End Superfamily
5lldA01 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.99 3 244 3.60.15.10
4d02A02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Flavodoxin domain 0.9848 252 393 3.40.50.360
5lldA01 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.974 3 244 3.60.15.10
1ychD01 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.969 2 245 3.60.15.10
4d02A02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Flavodoxin domain 0.9646 252 393 3.40.50.360
ID Description Score Start End GO Terms
AF-A0A352ILB0-F1-model_v4 deleted 0.9989 242 391
AF-M1ZXA5-F1-model_v4 Metallo-beta-lactamase/flavodoxin domain-containing protein 0.9986 309 394 GO:0010181
GO:0016651
AF-A0A2N2CH05-F1-model_v4 MBL fold hydrolase 0.9976 3 137 GO:0016787
AF-A0A1V6KDT9-F1-model_v4 Anaerobic nitric oxide reductase flavorubredoxin 0.9954 266 395 GO:0010181
AF-A0A7V6C724-F1-model_v4 Anaerobic nitric oxide reductase flavorubredoxin 0.9944 294 393 GO:0010181

Map