F069911

General Info

Members Datasets Scaffolds Average Seq Length
112 27 224 437

Family's Representative Sequence

Representative Sequence 3300033528|Ga0316588_1005274|Ga0316588_10052741
Length 477
Sequence VVSGAHGHSPYLYVFDDPVMMIKRKANSEMISRPEERFDSGGAVKSSLGWKNNRSSFGNLLLHIHPRSLPERNLKFSHTWGLGGAALMLVLLQAFTGILLLFVFQPVPEKAYDSVRTLMDQVLFGSFIRNMHYWSANLLVVVVLLHMLRVFYTDAFHAPRRFNWVVGLCLFGFVLISNFTGYLLPWDQLSYWAVTISTGMLEYMPLFGTTLQNFIRGGTEMGPATLSNFFVFHMVVMPVCFLLFLPFHFWRIRKDGGVVRPRAAGTEAAPPVRMVPAMPDLVIREISLGLVVAAVIFLLAAFFDAPLGDSANPGLSPNPTKAPWYFMGLQELMLHFHPLFAVFIIPLVLVGLLIYLPYFRYDSDMPGIWFRSGKGRRSAIAAALAALMITPVWILADEYFLDFESWFPNLPPAVSNGLLPVGFIAIILAGGYRLVRKKYSNTNNEAIQALFVFLLVALMVLTAFGIWLRGEGMVLSF

Samples

Sample ID Description Type Environment
1 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
2 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
3 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
4 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
5 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
6 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
7 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
8 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
9 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
10 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
11 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
12 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
13 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
14 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
15 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
16 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
17 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
18 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
19 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
20 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
21 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
22 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
23 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
24 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
25 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
26 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
27 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.43
Metatranscriptomes 3.57
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 82.14
Stem 0
Stem Tuber 0
Unclassified 11.61

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0316588_1005274 3300033528 Bacteria 2505
2 Ga0316575_10002929 3300031665 Bacteria 5809
3 Ga0316575_10010480 3300031665 Bacteria 3408
4 Ga0316575_10044602 3300031665 Bacteria 1759
5 Ga0316575_10044650 3300031665 Unclassified 1759
6 Ga0316579_10000377 3300031691 Bacteria 14083
7 Ga0316579_10006330 3300031691 Bacteria 4827
8 Ga0316579_10007677 3300031691 Bacteria 4465
9 Ga0316579_10014139 3300031691 Bacteria 3443
10 Ga0316579_10044766 3300031691 Bacteria 2062
11 Ga0316576_10000213 3300031727 Bacteria 24429
12 Ga0316576_10012751 3300031727 Bacteria 5561
13 Ga0316576_10022260 3300031727 Bacteria 4399
14 Ga0316576_10041689 3300031727 Bacteria 3306
15 Ga0316576_10042555 3300031727 Bacteria 3274
16 Ga0316576_10049130 3300031727 Bacteria 3062
17 Ga0316576_10053227 3300031727 Bacteria 2949
18 Ga0316576_10053471 3300031727 Bacteria 2942
19 Ga0316576_10062040 3300031727 Bacteria 2740
20 Ga0316576_10082381 3300031727 Unclassified 2389
21 Ga0316576_10150638 3300031727 Bacteria 1752
22 Ga0316578_10000853 3300031728 Bacteria 11439
23 Ga0316578_10001281 3300031728 Bacteria 10057
24 Ga0316578_10019076 3300031728 Bacteria 3769
25 Ga0316578_10019407 3300031728 Bacteria 3741
26 Ga0316578_10021408 3300031728 Bacteria 3588
27 Ga0316578_10098722 3300031728 Archaea 1749
28 Ga0316578_10114279 3300031728 Bacteria 1622
29 Ga0316577_10001569 3300031733 Bacteria 10876
30 Ga0316577_10001932 3300031733 Bacteria 10045
31 Ga0316577_10010429 3300031733 Bacteria 5016
32 Ga0316577_10027706 3300031733 Unclassified 3159
33 Ga0316577_10057660 3300031733 Bacteria 2168
34 Ga0316577_10067306 3300031733 Unclassified 1999
35 Ga0316583_10000992 3300032133 Bacteria 9126
36 Ga0316583_10002689 3300032133 Bacteria 6209
37 Ga0316583_10007343 3300032133 Bacteria 3969
38 Ga0316583_10008545 3300032133 Bacteria 3693
39 Ga0316585_10000798 3300032137 Bacteria 7940
40 Ga0316585_10018030 3300032137 Unclassified 2139
41 Ga0316580_10006268 3300032139 Bacteria 3510
42 Ga0316580_10009082 3300032139 Bacteria 2987
43 Ga0316580_10015153 3300032139 Bacteria 2357
44 Ga0316593_10020418 3300032168 Unclassified 2060
45 Ga0316593_10028039 3300032168 Bacteria 1812
46 Ga0316596_1020345 3300033541 Unclassified 1687
47 Ga0316574_0001783 3300035398 Bacteria 10461
48 Ga0316574_0006004 3300035398 Bacteria 6524
49 Ga0316574_0007306 3300035398 Bacteria 6048
50 Ga0316574_0018665 3300035398 Bacteria 4081
51 Ga0316574_0025170 3300035398 Bacteria 3570
52 Ga0316574_0047622 3300035398 Unclassified 2662
53 Ga0316574_0075607 3300035398 Bacteria 2133
54 Ga0316574_0075940 3300035398 Unclassified 2128
55 Ga0316574_0095202 3300035398 Bacteria 1902
56 Ga0316582_0001040 3300036647 Bacteria 11605
57 Ga0316582_0001167 3300036647 Bacteria 11220
58 Ga0316582_0007597 3300036647 Bacteria 5779
59 Ga0316582_0009395 3300036647 Bacteria 5308
60 Ga0316582_0016088 3300036647 Bacteria 4295
61 Ga0316582_0098343 3300036647 Unclassified 1935
62 Ga0316582_0121550 3300036647 Bacteria 1747
63 Ga0316582_0127367 3300036647 Bacteria 1708
64 Ga0316582_0305262 3300036647 Unclassified 1094
65 Ga0316584_0003677 3300036712 Bacteria 10032
66 Ga0316584_0005302 3300036712 Bacteria 8633
67 Ga0316584_0009140 3300036712 Bacteria 6863
68 Ga0316584_0015624 3300036712 Bacteria 5431
69 Ga0316584_0016019 3300036712 Bacteria 5369
70 Ga0316584_0029323 3300036712 Bacteria 4061
71 Ga0316584_0034891 3300036712 Bacteria 3730
72 Ga0316584_0049284 3300036712 Bacteria 3148
73 Ga0316584_0051144 3300036712 Archaea 3090
74 Ga0316584_0113475 3300036712 Archaea 2027
75 Ga0316584_0174164 3300036712 Bacteria 1594
76 Ga0316581_0014318 3300037588 Bacteria 2257
77 Ga0316581_0015599 3300037588 Bacteria 2173
78 Ga0400484_22567 3300038725 Bacteria 8217
79 Ga0400491_18482 3300038727 Bacteria 2955
80 Ga0400485_08480 3300038735 Bacteria 12550
81 Ga0400485_13804 3300038735 Bacteria 2412
82 Ga0400488_14986 3300038741 Bacteria 1852
83 Ga0400488_15052 3300038741 Bacteria 2718
84 Ga0400488_50346 3300038741 Bacteria 4420
85 Ga0400486_06443 3300038742 Bacteria 19261
86 Ga0400486_25464 3300038742 Bacteria 13664
87 Ga0400486_29644 3300038742 Bacteria 1155
88 Ga0400486_31985 3300038742 Bacteria 11813
89 Ga0400483_069559 3300039062 Bacteria 57705
90 Ga0400483_086750 3300039062 Bacteria 7280
91 Ga0400483_111289 3300039062 Bacteria 1445
92 Ga0400483_228134 3300039062 Bacteria 119181
93 Ga0400483_283884 3300039062 Bacteria 10714
94 Ga0400483_286631 3300039062 Bacteria 1720
95 Ga0400489_41646 3300039093 Bacteria 7332
96 Ga0400489_52247 3300039093 Bacteria 37995
97 Ga0400487_29175 3300039110 Bacteria 7345
98 Ga0451577_0001411 3300042876 Bacteria 32067
99 Ga0451577_0004261 3300042876 Bacteria 15215
100 Ga0451577_0041720 3300042876 Unclassified 4119
101 Ga0453683_0072164 3300044673 Bacteria 2161
102 Ga0453684_0000522 3300044712 Bacteria 146962
103 Ga0453684_0000548 3300044712 Bacteria 142109
104 Ga0453684_0002070 3300044712 Bacteria 51016
105 Ga0453684_0017697 3300044712 Bacteria 11011
106 Ga0453684_0018076 3300044712 Bacteria 10852
107 Ga0453684_0040133 3300044712 Bacteria 6365
108 Ga0453684_0085168 3300044712 Bacteria 3928
109 Ga0453684_0381033 3300044712 Bacteria 1584
110 Ga0453684_0488436 3300044712 Bacteria 1365
111 Ga0451576_0000230 3300045051 Bacteria 136200
112 Ga0451576_0122249 3300045051 Unclassified 2711
113 Ga0316588_1005274
114 Ga0316575_10002929
115 Ga0316575_10010480
116 Ga0316575_10044602
117 Ga0316575_10044650
118 Ga0316579_10000377
119 Ga0316579_10006330
120 Ga0316579_10007677
121 Ga0316579_10014139
122 Ga0316579_10044766
123 Ga0316576_10000213
124 Ga0316576_10012751
125 Ga0316576_10022260
126 Ga0316576_10041689
127 Ga0316576_10042555
128 Ga0316576_10049130
129 Ga0316576_10053227
130 Ga0316576_10053471
131 Ga0316576_10062040
132 Ga0316576_10082381
133 Ga0316576_10150638
134 Ga0316578_10000853
135 Ga0316578_10001281
136 Ga0316578_10019076
137 Ga0316578_10019407
138 Ga0316578_10021408
139 Ga0316578_10098722
140 Ga0316578_10114279
141 Ga0316577_10001569
142 Ga0316577_10001932
143 Ga0316577_10010429
144 Ga0316577_10027706
145 Ga0316577_10057660
146 Ga0316577_10067306
147 Ga0316583_10000992
148 Ga0316583_10002689
149 Ga0316583_10007343
150 Ga0316583_10008545
151 Ga0316585_10000798
152 Ga0316585_10018030
153 Ga0316580_10006268
154 Ga0316580_10009082
155 Ga0316580_10015153
156 Ga0316593_10020418
157 Ga0316593_10028039
158 Ga0316596_1020345
159 Ga0316574_0001783
160 Ga0316574_0006004
161 Ga0316574_0007306
162 Ga0316574_0018665
163 Ga0316574_0025170
164 Ga0316574_0047622
165 Ga0316574_0075607
166 Ga0316574_0075940
167 Ga0316574_0095202
168 Ga0316582_0001040
169 Ga0316582_0001167
170 Ga0316582_0007597
171 Ga0316582_0009395
172 Ga0316582_0016088
173 Ga0316582_0098343
174 Ga0316582_0121550
175 Ga0316582_0127367
176 Ga0316582_0305262
177 Ga0316584_0003677
178 Ga0316584_0005302
179 Ga0316584_0009140
180 Ga0316584_0015624
181 Ga0316584_0016019
182 Ga0316584_0029323
183 Ga0316584_0034891
184 Ga0316584_0049284
185 Ga0316584_0051144
186 Ga0316584_0113475
187 Ga0316584_0174164
188 Ga0316581_0014318
189 Ga0316581_0015599
190 Ga0400484_22567
191 Ga0400491_18482
192 Ga0400485_08480
193 Ga0400485_13804
194 Ga0400488_14986
195 Ga0400488_15052
196 Ga0400488_50346
197 Ga0400486_06443
198 Ga0400486_25464
199 Ga0400486_29644
200 Ga0400486_31985
201 Ga0400483_069559
202 Ga0400483_086750
203 Ga0400483_111289
204 Ga0400483_228134
205 Ga0400483_283884
206 Ga0400483_286631
207 Ga0400489_41646
208 Ga0400489_52247
209 Ga0400487_29175
210 Ga0451577_0001411
211 Ga0451577_0004261
212 Ga0451577_0041720
213 Ga0453683_0072164
214 Ga0453684_0000522
215 Ga0453684_0000548
216 Ga0453684_0002070
217 Ga0453684_0017697
218 Ga0453684_0018076
219 Ga0453684_0040133
220 Ga0453684_0085168
221 Ga0453684_0381033
222 Ga0453684_0488436
223 Ga0451576_0000230
224 Ga0451576_0122249

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00033

Cytochrome_B

Cytochrome b/b6/petB

70

256

0.98

PF13631

Cytochrom_B_N_2

Cytochrome b(N-terminal)/b6/petB

137

317

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
2d2c-assembly1.cif.gz_A crystal structure of cytochrome b6f complex with dbmib from m. laminosus 0.9446 65 239
1vf5-assembly1.cif.gz_A crystal structure of cytochrome b6f complex from m.laminosus 0.8962 39 236
2e74-assembly1.cif.gz_A crystal structure of the cytochrome b6f complex from m.laminosus 0.8834 36 240
4h44-assembly1.cif.gz_A 2.70 a cytochrome b6f complex structure from nostoc pcc 7120 0.8744 35 240
1q90-assembly1.cif.gz_B structure of the cytochrome b6f (plastohydroquinone : plastocyanin oxidoreductase) from chlamydomonas reinhardtii 0.8737 35 240
ID Description Score Start End Superfamily
2e76A00 Mainly Alpha;Up-down Bundle;Cytochrome Bc1 Complex; Chain C;Cytochrome Bc1 Complex; Chain C 0.9514 52 240 1.20.810.10
2d2cA00 Mainly Alpha;Up-down Bundle;Cytochrome Bc1 Complex; Chain C;Cytochrome Bc1 Complex; Chain C 0.9446 65 239 1.20.810.10
1vf5A00 Mainly Alpha;Up-down Bundle;Cytochrome Bc1 Complex; Chain C;Cytochrome Bc1 Complex; Chain C 0.8962 39 236 1.20.810.10
af_P05642_1_215_1.20.810.10 Mainly Alpha;Up-down Bundle;Cytochrome Bc1 Complex; Chain C;Cytochrome Bc1 Complex; Chain C 0.8764 35 240 1.20.810.10
1vf5A00 Mainly Alpha;Up-down Bundle;Cytochrome Bc1 Complex; Chain C;Cytochrome Bc1 Complex; Chain C 0.8457 39 236 1.20.810.10
ID Description Score Start End GO Terms
AF-A8CCZ3-F1-model_v4 Cytochrome b6 0.9782 63 191 GO:0009055
GO:0009536
GO:0016020
GO:0016491
GO:0022904
AF-A0A2K2DVB0-F1-model_v4 Cytochrome b/b6 N-terminal region profile domain-containing protein 0.9775 63 189 GO:0009055
GO:0016020
GO:0016491
GO:0022904
AF-A0A7V9ZC11-F1-model_v4 Cytochrome b N-terminal domain-containing protein 0.9766 63 188 GO:0009055
GO:0016020
GO:0016491
GO:0022904
AF-A8CCZ1-F1-model_v4 Cytochrome b6 0.9729 63 217 GO:0009055
GO:0009536
GO:0016020
GO:0016491
GO:0022904
AF-A0A0B0I5F4-F1-model_v4 deleted 0.9694 69 237

Map