F059804

General Info

Members Datasets Scaffolds Average Seq Length
110 48 220 452

Family's Representative Sequence

Representative Sequence 3300031665|Ga0316575_10025506|Ga0316575_100255062
Length 508
Sequence VEILSNAIGYVNGLVWGPPMLVLILGTGLFLTLGLGFMPLRRLGYGFRMLWAGRREQGQGDITPFNALMTSLAATIGTGNIAGVATAIAIGGPGALFWMWMTALVGMATKYAEAVLAMRYREVDDNNNHVGGPMYYIRNGLGRNWAWLGTTFAVFGALAGFGIGNSVQANSVADALGTKFGVPELATGLVMALIVGLVLIGGIRWIAQVAGKLVPFMAVAYILGGLAVLALNINELPAAFALILSEAFTPTAGIGGFAGAGMMLAVQMGVARGIFSNEAGLGSAPIAHAAAESDSPVRQGTVAMLGTFIDTIIVCTITGLVIVVSGQWQGVNPDFTACTEQGGAIEQRLDTSWGIERPGTLCTDGAGTEVNKLITGASLSTVAFGSELPGTGKYIVALGLALFAFTTILGWAVYGERCVEYLFGIRAILPFRLLWVAMVPIGAIAHLDFAWLVADTLNALMAIPNLIALLLLSPVVFKVTKAFFDSERAGLASRGAVIRGEGAADPPD

Samples

Sample ID Description Type Environment
1 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
2 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
4 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
5 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
6 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
7 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
8 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
9 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
10 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
11 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
12 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
13 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
14 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
15 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
16 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
17 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
18 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
19 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
20 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
21 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
22 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
23 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
24 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
25 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
26 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
27 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
28 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
29 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
30 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
31 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
32 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
33 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
34 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
35 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
36 3300049688 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_A_4_drought Metagenome Rhizosphere
37 2744054655 Acinetobacter sp. BMW17 Isolate Unclassified
38 2816332295 Bacillus paralicheniformis MDJK30 Isolate Rhizosphere
39 2846540461 Photorhabdus luminescens HIM3 Isolate Rhizosphere
40 2857604169 Domibacillus sp. R-71921 Isolate Unclassified
41 2857609550 Domibacillus sp. R-71929 Isolate Unclassified
42 2888373701 Serratia rhizosphaerae KUDC3025 Isolate Rhizosphere
43 2916971899 Alkalihalobacillus miscanthi AK13 Isolate Rhizosphere
44 2919497567 Shewanella putrefaciens 3469 Isolate Unclassified
45 3001272096 Lederbergia citrisecunda FJAT-49732 Isolate Rhizosphere
46 3006858327 Bacillus paralicheniformis SUBG0010 Isolate Unclassified
47 3006988479 Bacillus sp. FJAT-49711 Isolate Rhizosphere
48 8057632132 Cytobacillus kochii RZ2 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 82.73
Metatranscriptomes 6.36
Isolates 10.91

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 71.82
Stem 0
Stem Tuber 0
Unclassified 0.91

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0316575_10025506 3300031665 Bacteria 2292
2 Ga0065714_10066891 3300005288 Bacteria 6139
3 Ga0307408_100018160 3300031548 Bacteria 4720
4 Ga0316575_10008671 3300031665 Bacteria 3708
5 Ga0316575_10021522 3300031665 Bacteria 2483
6 Ga0316579_10002942 3300031691 Bacteria 6540
7 Ga0316579_10010351 3300031691 Bacteria 3942
8 Ga0316579_10014525 3300031691 Bacteria 3407
9 Ga0316579_10027308 3300031691 Bacteria 2591
10 Ga0316579_10040172 3300031691 Bacteria 2169
11 Ga0316576_10000426 3300031727 Bacteria 19502
12 Ga0316576_10001499 3300031727 Bacteria 12598
13 Ga0316576_10041018 3300031727 Bacteria 3330
14 Ga0316576_10070174 3300031727 Bacteria 2584
15 Ga0316576_10070766 3300031727 Bacteria 2572
16 Ga0316576_10099948 3300031727 Bacteria 2167
17 Ga0316578_10001037 3300031728 Bacteria 10690
18 Ga0316578_10003515 3300031728 Bacteria 7190
19 Ga0316578_10003660 3300031728 Bacteria 7090
20 Ga0316578_10006458 3300031728 Bacteria 5790
21 Ga0316578_10007617 3300031728 Bacteria 5444
22 Ga0316578_10014976 3300031728 Bacteria 4158
23 Ga0316578_10032757 3300031728 Bacteria 2972
24 Ga0316578_10055321 3300031728 Bacteria 2328
25 Ga0316578_10094856 3300031728 Bacteria 1785
26 Ga0316577_10001192 3300031733 Bacteria 12007
27 Ga0316577_10001612 3300031733 Bacteria 10763
28 Ga0316577_10015319 3300031733 Bacteria 4217
29 Ga0316577_10071103 3300031733 Bacteria 1942
30 Ga0316577_10072112 3300031733 Bacteria 1928
31 Ga0307409_100201355 3300031995 Bacteria 1782
32 Ga0307414_10170836 3300032004 Bacteria 1738
33 Ga0316583_10001943 3300032133 Bacteria 7066
34 Ga0316583_10003042 3300032133 Bacteria 5885
35 Ga0316585_10000003 3300032137 Bacteria 34303
36 Ga0316585_10005073 3300032137 Bacteria 3703
37 Ga0316580_10000082 3300032139 Bacteria 16711
38 Ga0316580_10004415 3300032139 Bacteria 4076
39 Ga0316593_10001674 3300032168 Bacteria 4995
40 Ga0316593_10007271 3300032168 Bacteria 3032
41 Ga0316592_1000130 3300033524 Bacteria 8117
42 Ga0316588_1001169 3300033528 Bacteria 4177
43 Ga0316588_1005470 3300033528 Bacteria 2476
44 Ga0316596_1001300 3300033541 Bacteria 4963
45 Ga0316596_1009194 3300033541 Bacteria 2369
46 Ga0316574_0000294 3300035398 Bacteria 18762
47 Ga0316574_0002840 3300035398 Bacteria 8786
48 Ga0316574_0003008 3300035398 Bacteria 8592
49 Ga0316574_0083480 3300035398 Bacteria 2031
50 Ga0316574_0101320 3300035398 Bacteria 1843
51 Ga0316582_0000039 3300036647 Bacteria 30882
52 Ga0316582_0002082 3300036647 Bacteria 9217
53 Ga0316582_0007816 3300036647 Bacteria 5715
54 Ga0316582_0009262 3300036647 Bacteria 5336
55 Ga0316582_0043792 3300036647 Bacteria 2810
56 Ga0316584_0002784 3300036712 Bacteria 11191
57 Ga0316584_0010027 3300036712 Bacteria 6600
58 Ga0316584_0011087 3300036712 Bacteria 6320
59 Ga0316584_0011674 3300036712 Bacteria 6180
60 Ga0316584_0025451 3300036712 Bacteria 4340
61 Ga0316584_0030062 3300036712 Bacteria 4012
62 Ga0316584_0065761 3300036712 Bacteria 2717
63 Ga0316584_0099462 3300036712 Bacteria 2178
64 Ga0316584_0122811 3300036712 Bacteria 1940
65 Ga0395899_0118644 3300037312 Bacteria 1897
66 Ga0316581_0010751 3300037588 Bacteria 2545
67 Ga0400484_20870 3300038725 Bacteria 14130
68 Ga0400484_33177 3300038725 Bacteria 4029
69 Ga0400490_02074 3300038726 Bacteria 8399
70 Ga0400490_07533 3300038726 Bacteria 26292
71 Ga0400490_15794 3300038726 Bacteria 21686
72 Ga0400490_23777 3300038726 Bacteria 3759
73 Ga0400490_37775 3300038726 Bacteria 4206
74 Ga0400485_05791 3300038735 Bacteria 10323
75 Ga0400486_01705 3300038742 Bacteria 5083
76 Ga0400486_06183 3300038742 Bacteria 2332
77 Ga0400486_27944 3300038742 Bacteria 1755
78 Ga0400483_009911 3300039062 Bacteria 21418
79 Ga0400483_034633 3300039062 Bacteria 15072
80 Ga0400483_142153 3300039062 Bacteria 9504
81 Ga0400483_163464 3300039062 Bacteria 22945
82 Ga0400483_168655 3300039062 Bacteria 7961
83 Ga0400483_195067 3300039062 Bacteria 2272
84 Ga0400483_273583 3300039062 Bacteria 11597
85 Ga0400489_70434 3300039093 Bacteria 2702
86 Ga0400489_74051 3300039093 Bacteria 2806
87 Ga0400487_01879 3300039110 Bacteria 5784
88 Ga0400487_05612 3300039110 Bacteria 3392
89 Ga0400487_10010 3300039110 Bacteria 29139
90 Ga0400487_53951 3300039110 Bacteria 3475
91 Ga0439433_0006123 3300041999 Bacteria 2585
92 Ga0439462_0013295 3300042015 Bacteria 2109
93 Ga0453684_0005564 3300044712 Bacteria 24856
94 Ga0496117_0103097 3300048920 Unclassified 1799
95 Ga0496126_0119247 3300048929 Bacteria 2290
96 Ga0501040_0001128 3300049576 Bacteria 16928
97 Ga0501042_0000260 3300049578 Bacteria 25814
98 Ga0501259_001241 3300049688 Bacteria 4255
99 2745160734 2744054655 Bacteria 3552603
100 2817481495 2816332295 Bacteria 4352468
101 2846543100 2846540461 Bacteria 5471451
102 2857605639 2857604169 Bacteria 5111450
103 2857612029 2857609550 Bacteria 3753890
104 2888376721 2888373701 Bacteria 5098052
105 2916974128 2916971899 Bacteria 4250608
106 2919497744 2919497567 Bacteria 4408621
107 3001272446 3001272096 Bacteria 4729684
108 3006861920 3006858327 Bacteria 4317835
109 3006992332 3006988479 Bacteria 4767936
110 8057636860 8057632132 Bacteria 4726859
111 Ga0316575_10025506
112 Ga0065714_10066891
113 Ga0307408_100018160
114 Ga0316575_10008671
115 Ga0316575_10021522
116 Ga0316579_10002942
117 Ga0316579_10010351
118 Ga0316579_10014525
119 Ga0316579_10027308
120 Ga0316579_10040172
121 Ga0316576_10000426
122 Ga0316576_10001499
123 Ga0316576_10041018
124 Ga0316576_10070174
125 Ga0316576_10070766
126 Ga0316576_10099948
127 Ga0316578_10001037
128 Ga0316578_10003515
129 Ga0316578_10003660
130 Ga0316578_10006458
131 Ga0316578_10007617
132 Ga0316578_10014976
133 Ga0316578_10032757
134 Ga0316578_10055321
135 Ga0316578_10094856
136 Ga0316577_10001192
137 Ga0316577_10001612
138 Ga0316577_10015319
139 Ga0316577_10071103
140 Ga0316577_10072112
141 Ga0307409_100201355
142 Ga0307414_10170836
143 Ga0316583_10001943
144 Ga0316583_10003042
145 Ga0316585_10000003
146 Ga0316585_10005073
147 Ga0316580_10000082
148 Ga0316580_10004415
149 Ga0316593_10001674
150 Ga0316593_10007271
151 Ga0316592_1000130
152 Ga0316588_1001169
153 Ga0316588_1005470
154 Ga0316596_1001300
155 Ga0316596_1009194
156 Ga0316574_0000294
157 Ga0316574_0002840
158 Ga0316574_0003008
159 Ga0316574_0083480
160 Ga0316574_0101320
161 Ga0316582_0000039
162 Ga0316582_0002082
163 Ga0316582_0007816
164 Ga0316582_0009262
165 Ga0316582_0043792
166 Ga0316584_0002784
167 Ga0316584_0010027
168 Ga0316584_0011087
169 Ga0316584_0011674
170 Ga0316584_0025451
171 Ga0316584_0030062
172 Ga0316584_0065761
173 Ga0316584_0099462
174 Ga0316584_0122811
175 Ga0395899_0118644
176 Ga0316581_0010751
177 Ga0400484_20870
178 Ga0400484_33177
179 Ga0400490_02074
180 Ga0400490_07533
181 Ga0400490_15794
182 Ga0400490_23777
183 Ga0400490_37775
184 Ga0400485_05791
185 Ga0400486_01705
186 Ga0400486_06183
187 Ga0400486_27944
188 Ga0400483_009911
189 Ga0400483_034633
190 Ga0400483_142153
191 Ga0400483_163464
192 Ga0400483_168655
193 Ga0400483_195067
194 Ga0400483_273583
195 Ga0400489_70434
196 Ga0400489_74051
197 Ga0400487_01879
198 Ga0400487_05612
199 Ga0400487_10010
200 Ga0400487_53951
201 Ga0439433_0006123
202 Ga0439462_0013295
203 Ga0453684_0005564
204 Ga0496117_0103097
205 Ga0496126_0119247
206 Ga0501040_0001128
207 Ga0501042_0000260
208 Ga0501259_001241
209 2745160734
210 2817481495
211 2846543100
212 2857605639
213 2857612029
214 2888376721
215 2916974128
216 2919497744
217 3001272446
218 3006861920
219 3006992332
220 8057636860

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01235

Na_Ala_symp

Sodium:alanine symporter family

50

494

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
6csf-assembly1.cif.gz_C crystal structure of sodium/alanine symporter agcs with d-alanine bound 0.9056 17 436
6csf-assembly2.cif.gz_M crystal structure of sodium/alanine symporter agcs with d-alanine bound 0.8937 16 440
6csf-assembly1.cif.gz_C crystal structure of sodium/alanine symporter agcs with d-alanine bound 0.8871 17 436
6csf-assembly2.cif.gz_M crystal structure of sodium/alanine symporter agcs with d-alanine bound 0.8799 16 440
3qs5-assembly1.cif.gz_A crystal structure of leut mutant i359q bound to sodium and l-tryptophan 0.7237 63 400
ID Description Score Start End Superfamily
af_P30143_57_455_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8992 68 438 1.20.1740.10
af_Q2G2N5_66_476_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.898 60 438 1.20.1740.10
af_Q2FZQ1_52_496_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8818 59 437 1.20.1740.10
af_P30143_57_455_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8365 68 438 1.20.1740.10
af_Q2G2N5_66_476_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8301 60 438 1.20.1740.10
ID Description Score Start End GO Terms
AF-A0A3D3QNU8-F1-model_v4 Sodium:alanine symporter family protein 0.9685 22 244 GO:0005283
GO:0005886
AF-A0A3D3QNU8-F1-model_v4 Sodium:alanine symporter family protein 0.9558 22 244 GO:0005283
GO:0005886
AF-A0A349QG97-F1-model_v4 deleted 0.9384 1 246
AF-A0A7X9HDG7-F1-model_v4 Sodium:alanine symporter family protein 0.923 6 397 GO:0005283
GO:0005886
AF-A0A7C3DGG3-F1-model_v4 Alanine:cation symporter family protein 0.9211 53 435 GO:0005283
GO:0005886

Map