F055209

General Info

Members Datasets Scaffolds Average Seq Length
109 53 218 560

Family's Representative Sequence

Representative Sequence 3300038742|Ga0400486_05265|Ga0400486_05265_10259_12076
Length 605
Sequence MQTGLSLLNNPMSFLTNIITGFYSEKTEYRLYTPLHKEDIVPKSVTHNERPWLKHYNPGVPKELTFETKCIPEFLDRAAERFPGKMALNFQGYELSFQELTAMVNRFSTCLHRFGIGKGDAVALLLPNVIPCVAAYYAVLRIGAIAVMNNPLYSDRELEHQFNDSGARVLITLDLLGDRMIDLRPKTQIKQIVYTSIGDYLPFPKNLLFPLVAKKKKLAAKVKPADDLYQWKPLLAQTQPDPPRVELSFEDVAMYQYTGGTTGVSKGVMLTHSNLSCQMQQAGAWFPGFGPDEIMLGALPFFHVFGLTTAMNLAIYFGWGNVLVPKPRPPQLLEAITKYKATFVPLVPTMYIGILQHPDIDKMDLTSIKGCFSGSAPLPVDVINEFESRTGAKIVEGYGLTESSPATHINPYGEGCRRKVGSIGVPLSSTDSKVVDVNDGTTEMAVGESGELLVHGPQVMKGYLNRPDATASTLTDGWLHTGDIATMDEDGYFYIVDRKKDMIISGGYNIYPRDIEELYFENPKVVEATAIGIPHPKRGEAVKVFMVLKEGETATEKEMIDYCDGKLAKYKWPTEIEFRAELPKTNVGKVLKKELRAEELKKRGA

Samples

Sample ID Description Type Environment
1 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
4 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
5 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
6 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
7 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
8 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
9 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
10 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
11 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
12 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
13 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
14 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
15 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
16 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
17 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
18 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
19 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
20 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
21 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
22 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
23 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
24 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
25 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
26 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
27 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
28 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
29 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
30 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
31 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
32 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
33 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
34 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
35 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
36 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
37 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
38 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
39 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
40 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
41 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
42 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
43 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
44 2510917027 Brevibacillus sp. CF112 Isolate Rhizosphere
45 2512564013 Brevibacillus sp. BC25 Isolate Rhizosphere
46 2740891818 Desulfofaba hansenii DSM 12642 Isolate Unclassified
47 2831905167 Ammoniphilus oxalaticus RAOx-1 Isolate Rhizosphere
48 2857460504 Brevibacillus sp. R-74223 Isolate Unclassified
49 2857465823 Brevibacillus sp. R-74266 Isolate Unclassified
50 2857591370 Brevibacillus sp. R-71934 Isolate Unclassified
51 2915597211 Brevibacillus brevis Ag35 Isolate Nodule
52 2915606848 Brevibacillus sp. HD1.4A Isolate Rhizosphere
53 2929183550 Brevibacillus sp. R-71971 Hybrid assembly Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 89.91
Metatranscriptomes 0.92
Isolates 9.17

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.92
Nodule 0.92
Rhizoplane 0
Rhizosphere 65.14
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0400486_05265 3300038742 Bacteria 61476
2 JGI25407J50210_10011147 3300003373 Bacteria 2295
3 Ga0070708_100000349 3300005445 Bacteria 34913
4 Ga0070708_100022101 3300005445 Bacteria 5392
5 Ga0070706_100003646 3300005467 Bacteria 15071
6 Ga0070707_100002591 3300005468 Bacteria 17175
7 Ga0070707_100112261 3300005468 Bacteria 2643
8 Ga0070698_100064650 3300005471 Bacteria 3685
9 Ga0070696_100091078 3300005546 Bacteria 2171
10 Ga0081538_10000174 3300005981 Bacteria 69374
11 Ga0081538_10001092 3300005981 Bacteria 28732
12 Ga0209147_100050 3300025229 Bacteria 274639
13 Ga0207684_10003142 3300025910 Bacteria 16265
14 Ga0207646_10049404 3300025922 Bacteria 3768
15 Ga0265338_10023495 3300028800 Bacteria 6335
16 Ga0265328_10033732 3300031239 Bacteria 1897
17 Ga0265340_10015409 3300031247 Bacteria 3972
18 Ga0265331_10014644 3300031250 Bacteria 4167
19 Ga0316575_10000987 3300031665 Bacteria 8784
20 Ga0316575_10002287 3300031665 Bacteria 6409
21 Ga0316579_10006819 3300031691 Bacteria 4679
22 Ga0316579_10007464 3300031691 Bacteria 4517
23 Ga0316576_10000111 3300031727 Bacteria 30423
24 Ga0316576_10014161 3300031727 Bacteria 5322
25 Ga0316576_10015391 3300031727 Bacteria 5132
26 Ga0316576_10041774 3300031727 Bacteria 3303
27 Ga0316576_10085029 3300031727 Bacteria 2351
28 Ga0316576_10117577 3300031727 Bacteria 1995
29 Ga0316578_10005463 3300031728 Bacteria 6166
30 Ga0316578_10011075 3300031728 Bacteria 4702
31 Ga0316578_10025002 3300031728 Bacteria 3353
32 Ga0316577_10026694 3300031733 Bacteria 3217
33 Ga0316577_10039965 3300031733 Bacteria 2624
34 Ga0316583_10001795 3300032133 Bacteria 7296
35 Ga0316583_10012375 3300032133 Bacteria 3077
36 Ga0316585_10000810 3300032137 Bacteria 7902
37 Ga0316580_10001014 3300032139 Bacteria 7023
38 Ga0316580_10008255 3300032139 Bacteria 3118
39 Ga0316588_1008909 3300033528 Bacteria 2080
40 Ga0316574_0001570 3300035398 Bacteria 10916
41 Ga0316574_0001783 3300035398 Bacteria 10461
42 Ga0316574_0140070 3300035398 Bacteria 1558
43 Ga0316582_0002723 3300036647 Bacteria 8392
44 Ga0316582_0005893 3300036647 Bacteria 6372
45 Ga0316582_0010870 3300036647 Bacteria 5006
46 Ga0316584_0004245 3300036712 Bacteria 9463
47 Ga0316584_0005293 3300036712 Bacteria 8639
48 Ga0316584_0009961 3300036712 Bacteria 6620
49 Ga0316584_0015046 3300036712 Bacteria 5526
50 Ga0316584_0017310 3300036712 Bacteria 5178
51 Ga0316584_0018001 3300036712 Bacteria 5091
52 Ga0316584_0097153 3300036712 Bacteria 2205
53 Ga0316584_0125673 3300036712 Bacteria 1916
54 Ga0395900_0026502 3300037418 Bacteria 5935
55 Ga0316581_0010839 3300037588 Bacteria 2536
56 Ga0395901_0101471 3300038443 Bacteria 3019
57 Ga0400484_03212 3300038725 Bacteria 6549
58 Ga0400484_21344 3300038725 Bacteria 14441
59 Ga0400484_37081 3300038725 Bacteria 13200
60 Ga0400490_30636 3300038726 Bacteria 7918
61 Ga0400490_37139 3300038726 Bacteria 39208
62 Ga0400490_45784 3300038726 Bacteria 3860
63 Ga0400491_27992 3300038727 Bacteria 7107
64 Ga0400485_06211 3300038735 Bacteria 30943
65 Ga0400485_10030 3300038735 Bacteria 7022
66 Ga0400485_10317 3300038735 Bacteria 11302
67 Ga0400488_45623 3300038741 Bacteria 2545
68 Ga0400486_03375 3300038742 Bacteria 25334
69 Ga0400486_22976 3300038742 Bacteria 93315
70 Ga0400486_27366 3300038742 Bacteria 9359
71 Ga0400483_032136 3300039062 Bacteria 8488
72 Ga0400483_116807 3300039062 Bacteria 3494
73 Ga0400483_145723 3300039062 Bacteria 34433
74 Ga0400483_164249 3300039062 Bacteria 3697
75 Ga0400483_191728 3300039062 Bacteria 4073
76 Ga0400483_207829 3300039062 Bacteria 67117
77 Ga0400483_208358 3300039062 Bacteria 17273
78 Ga0400489_03049 3300039093 Bacteria 14757
79 Ga0400489_03062 3300039093 Bacteria 28749
80 Ga0400489_11440 3300039093 Bacteria 79975
81 Ga0400489_28764 3300039093 Bacteria 8188
82 Ga0400489_52568 3300039093 Bacteria 3219
83 Ga0400489_83876 3300039093 Bacteria 27736
84 Ga0400489_90203 3300039093 Bacteria 38544
85 Ga0400487_09552 3300039110 Bacteria 12045
86 Ga0400487_21303 3300039110 Bacteria 74949
87 Ga0451577_0003924 3300042876 Bacteria 16069
88 Ga0451577_0054681 3300042876 Bacteria 3564
89 Ga0451577_0065880 3300042876 Bacteria 3230
90 Ga0466969_0016030 3300044656 Bacteria 3926
91 Ga0453684_0000588 3300044712 Bacteria 135201
92 Ga0453684_0000786 3300044712 Bacteria 109033
93 Ga0453684_0001704 3300044712 Bacteria 59217
94 Ga0453684_0007224 3300044712 Bacteria 20592
95 Ga0453684_0013803 3300044712 Bacteria 13055
96 Ga0453684_0080267 3300044712 Bacteria 4074
97 Ga0453684_0144207 3300044712 Bacteria 2839
98 Ga0466968_0009251 3300044735 Bacteria 3789
99 Ga0466959_0064641 3300045049 Bacteria 2656
100 2511176177 2510917027 Bacteria 5287437
101 2512638305 2512564013 Bacteria 6286191
102 2740993611 2740891818 Bacteria 6711283
103 2831906578 2831905167 Bacteria 3319172
104 2857462521 2857460504 Bacteria 5194327
105 2857466349 2857465823 Bacteria 6772595
106 2857593576 2857591370 Bacteria 6569758
107 2915600235 2915597211 Bacteria 6475886
108 2915609826 2915606848 Bacteria 6032732
109 2929185418 2929183550 Bacteria 6377511
110 Ga0400486_05265
111 JGI25407J50210_10011147
112 Ga0070708_100000349
113 Ga0070708_100022101
114 Ga0070706_100003646
115 Ga0070707_100002591
116 Ga0070707_100112261
117 Ga0070698_100064650
118 Ga0070696_100091078
119 Ga0081538_10000174
120 Ga0081538_10001092
121 Ga0209147_100050
122 Ga0207684_10003142
123 Ga0207646_10049404
124 Ga0265338_10023495
125 Ga0265328_10033732
126 Ga0265340_10015409
127 Ga0265331_10014644
128 Ga0316575_10000987
129 Ga0316575_10002287
130 Ga0316579_10006819
131 Ga0316579_10007464
132 Ga0316576_10000111
133 Ga0316576_10014161
134 Ga0316576_10015391
135 Ga0316576_10041774
136 Ga0316576_10085029
137 Ga0316576_10117577
138 Ga0316578_10005463
139 Ga0316578_10011075
140 Ga0316578_10025002
141 Ga0316577_10026694
142 Ga0316577_10039965
143 Ga0316583_10001795
144 Ga0316583_10012375
145 Ga0316585_10000810
146 Ga0316580_10001014
147 Ga0316580_10008255
148 Ga0316588_1008909
149 Ga0316574_0001570
150 Ga0316574_0001783
151 Ga0316574_0140070
152 Ga0316582_0002723
153 Ga0316582_0005893
154 Ga0316582_0010870
155 Ga0316584_0004245
156 Ga0316584_0005293
157 Ga0316584_0009961
158 Ga0316584_0015046
159 Ga0316584_0017310
160 Ga0316584_0018001
161 Ga0316584_0097153
162 Ga0316584_0125673
163 Ga0395900_0026502
164 Ga0316581_0010839
165 Ga0395901_0101471
166 Ga0400484_03212
167 Ga0400484_21344
168 Ga0400484_37081
169 Ga0400490_30636
170 Ga0400490_37139
171 Ga0400490_45784
172 Ga0400491_27992
173 Ga0400485_06211
174 Ga0400485_10030
175 Ga0400485_10317
176 Ga0400488_45623
177 Ga0400486_03375
178 Ga0400486_22976
179 Ga0400486_27366
180 Ga0400483_032136
181 Ga0400483_116807
182 Ga0400483_145723
183 Ga0400483_164249
184 Ga0400483_191728
185 Ga0400483_207829
186 Ga0400483_208358
187 Ga0400489_03049
188 Ga0400489_03062
189 Ga0400489_11440
190 Ga0400489_28764
191 Ga0400489_52568
192 Ga0400489_83876
193 Ga0400489_90203
194 Ga0400487_09552
195 Ga0400487_21303
196 Ga0451577_0003924
197 Ga0451577_0054681
198 Ga0451577_0065880
199 Ga0466969_0016030
200 Ga0453684_0000588
201 Ga0453684_0000786
202 Ga0453684_0001704
203 Ga0453684_0007224
204 Ga0453684_0013803
205 Ga0453684_0080267
206 Ga0453684_0144207
207 Ga0466968_0009251
208 Ga0466959_0064641
209 2511176177
210 2512638305
211 2740993611
212 2831906578
213 2857462521
214 2857466349
215 2857593576
216 2915600235
217 2915609826
218 2929185418

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13193

AMP-binding_C

AMP-binding enzyme C-terminal domain

514

589

0.98

PF00501

AMP-binding

AMP-binding enzyme

75

464

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
4u5y-assembly1.cif.gz_D crystal structure of the complex between the gnat domain of s. lividans pat and the acetyl-coa synthetase c-terminal domain of s. enterica 0.9215 470 551
5x8g-assembly2.cif.gz_D binary complex structure of a double mutant i454ra456k of o-succinylbenzoate coa synthetase (mene) from bacillus subtilis bound with its product analogue osb-ncoa at 1.90 angstrom 0.9203 29 549
3t5c-assembly2.cif.gz_B crystal structure of n-terminal domain of facl13 from mycobacterium tuberculosis in different space group c2 0.9186 25 453
5zrn-assembly1.cif.gz_A inhibitor bound crystal structure of n-terminal domain of facl13 from mycobacterium tuberculosis 0.9153 25 454
3t5c-assembly2.cif.gz_B crystal structure of n-terminal domain of facl13 from mycobacterium tuberculosis in different space group c2 0.914 25 453
ID Description Score Start End Superfamily
af_P31552_422_517_3.30.300.30 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;ANL, C-terminal domain 0.982 458 551 3.30.300.30
af_Q9LQS1_441_544_3.30.300.30 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;ANL, C-terminal domain 0.9816 457 555 3.30.300.30
af_I1LI90_433_534_3.30.300.30 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;ANL, C-terminal domain 0.979 456 557 3.30.300.30
af_P38137_433_538_3.30.300.30 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;ANL, C-terminal domain 0.9758 457 554 3.30.300.30
af_A0A1D6KNL0_124_190_3.30.300.30 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;ANL, C-terminal domain 0.9727 461 520 3.30.300.30
ID Description Score Start End GO Terms
AF-A0A5E6ZPG1-F1-model_v4 3-[(3aS,4S,7aS)-7a-methyl-1, 5-dioxo-octahydro-1H-inden-4-yl]propanoyl:CoA ligase (EC 6.2.1.41) 0.9806 482 555 GO:0016874
AF-A0A2D9F669-F1-model_v4 AMP-binding enzyme C-terminal domain-containing protein 0.9726 459 554 GO:0006631
GO:0031956
AF-A0A3D5MRC7-F1-model_v4 AMP-binding enzyme C-terminal domain-containing protein 0.9689 454 569 GO:0016405
AF-A0A380BDY4-F1-model_v4 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) 0.9587 482 553 GO:0004467
GO:0044550
AF-A0A2E4XRB8-F1-model_v4 AMP-binding enzyme C-terminal domain-containing protein 0.9512 459 562 GO:0006631
GO:0031956

Map