F038763

General Info

Members Datasets Scaffolds Average Seq Length
106 60 106 336

Family's Representative Sequence

Representative Sequence 3300031733|Ga0316577_10001011|Ga0316577_100010114
Length 352
Sequence MNTEGIVSPSNALTDLLSQIEQELQEIARCRHRSLEPYYGMMHYHLGWADENLGAFDANPGKRLRPLLCLLSCGAAGGDMRQALPAAAAVELVHNFSLVHDDIQDGSHTRRGRRAVWDIWGLAHGINVGDGLFVLARLALHRLAELGVPLPRQQLATLVLDRACLALCEGQYFDMTFEEHTSVDLERYLSMIRRKTAALLAAAAELGAIIATDDLGLVEHHRKFGENLGMAFQIQDDILGIWGEEQRTGKSAATDIRDRKKTLPVVYALRQDAEPDAASRIDEHYTRVDALNPEAIQEVMGLLESVGAKEYAEKMARQYYRQAISHLDRAGPANDRQIQLRELSASLLGRES

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 3300004801 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
3 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
7 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
8 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
9 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
10 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
13 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
14 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
15 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
16 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
17 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
18 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
19 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
20 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
21 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
23 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
24 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
25 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
26 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
30 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
31 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
32 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
33 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
34 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
35 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
36 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
37 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
38 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
39 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
40 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
41 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
42 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
43 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
44 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
45 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
46 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
47 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
48 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
49 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
50 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
51 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
52 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
53 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
54 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
55 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
56 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
57 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
58 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
59 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
60 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.06
Metatranscriptomes 0.94
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.89
Rhizosphere 95.28
Stem 0
Stem Tuber 0
Unclassified 2.83

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_539157 2162886007 Bacteria 9566
2 Ga0058860_12170226 3300004801 Unclassified 2832
3 Ga0065704_10000232 3300005289 Bacteria 69534
4 Ga0065707_10083475 3300005295 Bacteria 9048
5 Ga0065707_10104758 3300005295 Bacteria 2679
6 Ga0070689_100337504 3300005340 Bacteria 1262
7 Ga0070675_100193719 3300005354 Bacteria 1762
8 Ga0070700_100088863 3300005441 Bacteria 2012
9 Ga0070694_100111212 3300005444 Bacteria 1952
10 Ga0070694_100259046 3300005444 Unclassified 1319
11 Ga0070706_100119927 3300005467 Unclassified 2451
12 Ga0070698_100006029 3300005471 Bacteria 13203
13 Ga0070698_100090434 3300005471 Bacteria 3044
14 Ga0070698_100224073 3300005471 Bacteria 1813
15 Ga0070699_100094887 3300005518 Bacteria 2611
16 Ga0070704_100132134 3300005549 Unclassified 1936
17 Ga0068859_100084147 3300005617 Bacteria 3226
18 Ga0068861_100383233 3300005719 Bacteria 1243
19 Ga0081539_10001676 3300005985 Bacteria 35869
20 Ga0075430_100135772 3300006846 Bacteria 2050
21 Ga0075431_100328138 3300006847 Unclassified 1542
22 Ga0075433_10001252 3300006852 Bacteria 18532
23 Ga0075429_100011624 3300006880 Bacteria 7635
24 Ga0075429_100016580 3300006880 Bacteria 6383
25 Ga0075429_100154928 3300006880 Bacteria 2006
26 Ga0075429_100188042 3300006880 Bacteria 1810
27 Ga0097620_100084146 3300006931 Bacteria 3226
28 Ga0114129_10009225 3300009147 Bacteria 14071
29 Ga0114129_10029627 3300009147 Bacteria 7751
30 Ga0114129_10107200 3300009147 Unclassified 3859
31 Ga0114129_10126363 3300009147 Bacteria 3515
32 Ga0114129_10231061 3300009147 Bacteria 2491
33 Ga0105243_10234088 3300009148 Bacteria 1631
34 Ga0105237_10233966 3300009545 Bacteria 1838
35 Ga0105246_10011147 3300011119 Bacteria 5572
36 Ga0157378_10075060 3300013297 Bacteria 3043
37 Ga0207659_10200083 3300025926 Bacteria 1595
38 Ga0207708_10178104 3300026075 Bacteria 1687
39 Ga0207675_100340475 3300026118 Bacteria 1468
40 Ga0265320_10125751 3300031240 Bacteria 1166
41 Ga0316579_10002324 3300031691 Bacteria 7185
42 Ga0316579_10013644 3300031691 Bacteria 3498
43 Ga0316579_10018295 3300031691 Bacteria 3082
44 Ga0316579_10060497 3300031691 Bacteria 1782
45 Ga0316577_10001011 3300031733 Bacteria 12626
46 Ga0316577_10002158 3300031733 Bacteria 9637
47 Ga0316577_10017440 3300031733 Bacteria 3964
48 Ga0316577_10026445 3300031733 Unclassified 3232
49 Ga0316577_10026485 3300031733 Bacteria 3229
50 Ga0316577_10034886 3300031733 Bacteria 2811
51 Ga0316577_10061192 3300031733 Bacteria 2101
52 Ga0316577_10192480 3300031733 Bacteria 1153
53 Ga0307409_100136833 3300031995 Bacteria 2104
54 Ga0307416_100288537 3300032002 Bacteria 1623
55 Ga0307415_100448018 3300032126 Bacteria 1115
56 Ga0316582_0001810 3300036647 Bacteria 9656
57 Ga0316582_0064104 3300036647 Bacteria 2363
58 Ga0316582_0095183 3300036647 Bacteria 1965
59 Ga0316584_0001667 3300036712 Bacteria 13563
60 Ga0316584_0013684 3300036712 Bacteria 5752
61 Ga0316584_0014612 3300036712 Bacteria 5596
62 Ga0316584_0015282 3300036712 Bacteria 5487
63 Ga0316584_0072144 3300036712 Bacteria 2588
64 Ga0316584_0095513 3300036712 Unclassified 2225
65 Ga0316584_0109112 3300036712 Bacteria 2071
66 Ga0316584_0137169 3300036712 Bacteria 1826
67 Ga0316581_0001255 3300037588 Bacteria 5617
68 Ga0316581_0002243 3300037588 Unclassified 4572
69 Ga0316581_0010749 3300037588 Unclassified 2545
70 Ga0316581_0015298 3300037588 Bacteria 2190
71 Ga0400489_16267 3300039093 Bacteria 60904
72 Ga0400489_56606 3300039093 Bacteria 1280
73 Ga0451577_0496154 3300042876 Bacteria 1108
74 Ga0466972_0000403 3300044658 Bacteria 22786
75 Ga0453683_0044056 3300044673 Bacteria 2799
76 Ga0453683_0051934 3300044673 Bacteria 2567
77 Ga0453683_0157258 3300044673 Bacteria 1437
78 Ga0466965_0003770 3300044683 Bacteria 6686
79 Ga0453684_0001473 3300044712 Bacteria 66422
80 Ga0453684_0207940 3300044712 Unclassified 2277
81 Ga0466968_0001334 3300044735 Bacteria 8816
82 Ga0466960_0003227 3300044901 Bacteria 6256
83 Ga0451576_0046047 3300045051 Unclassified 4593
84 Ga0451576_0374245 3300045051 Bacteria 1492
85 Ga0451576_0491620 3300045051 Bacteria 1289
86 Ga0496108_0000014 3300048911 Bacteria 245016
87 Ga0496110_0073292 3300048913 Bacteria 3039
88 Ga0501040_0250149 3300049576 Bacteria 1264
89 Ga0501072_0204882 3300049588 Unclassified 1573
90 Ga0501075_0003701 3300049591 Bacteria 10267
91 Ga0501076_0179155 3300049592 Unclassified 1728
92 Ga0501257_004200 3300049686 Bacteria 3131
93 Ga0501079_0066964 3300049741 Bacteria 2772
94 nmdc:mga05p37_14031_c1 3300050507 Bacteria 9610
95 nmdc:mga05p37_181929_c1 3300050507 Bacteria 2557
96 nmdc:mga05p37_21730_c1 3300050507 Bacteria 7774
97 nmdc:mga05p37_27673_c1 3300050507 Bacteria 6906
98 nmdc:mga09592_11470_c1 3300050508 Bacteria 7211
99 nmdc:mga09592_119626_c1 3300050508 Bacteria 2262
100 nmdc:mga09592_348507_c1 3300050508 Bacteria 1282
101 nmdc:mga09592_398943_c1 3300050508 Bacteria 1189
102 nmdc:mga0qj67_176638_c1 3300050509 Bacteria 1734
103 nmdc:mga06r32_248279_c1 3300050510 Bacteria 1767
104 nmdc:mga06r32_395470_c1 3300050510 Bacteria 1364
105 Ga0501084_0116880 3300054114 Bacteria 2242
106 Ga0530510_0235886 3300061734 Bacteria 1361

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300031733 Ga0316577_10192480 Ga0316577_101924801 278
2 3300037588 Ga0316581_0015298 Ga0316581_0015298_1305_2165 278
3 3300039093 Ga0400489_56606 Ga0400489_56606_356_1270 285
4 3300042876 Ga0451577_0496154 Ga0451577_0496154_202_1095 297
5 3300037588 Ga0316581_0002243 Ga0316581_0002243_3574_4515 302
6 3300045051 Ga0451576_0046047 Ga0451576_0046047_3017_4036 311
7 3300009545 Ga0105237_10233966 Ga0105237_102339661 316
8 3300049686 Ga0501257_004200 Ga0501257_004200_707_1693 319
9 3300036712 Ga0316584_0109112 Ga0316584_0109112_26_1030 324
10 3300031240 Ga0265320_10125751 Ga0265320_101257512 325
11 3300036712 Ga0316584_0095513 Ga0316584_0095513_388_1395 329
12 3300044658 Ga0466972_0000403 Ga0466972_0000403_19161_20174 330
13 3300044683 Ga0466965_0003770 Ga0466965_0003770_5214_6227 330
14 3300044735 Ga0466968_0001334 Ga0466968_0001334_7239_8252 330
15 3300044901 Ga0466960_0003227 Ga0466960_0003227_3782_4795 330
16 3300004801 Ga0058860_12170226 Ga0058860_121702261 331
17 3300039093 Ga0400489_16267 Ga0400489_16267_14862_15884 331
18 3300005354 Ga0070675_100193719 Ga0070675_1001937192 332
19 3300005441 Ga0070700_100088863 Ga0070700_1000888632 332
20 3300005719 Ga0068861_100383233 Ga0068861_1003832332 332
21 3300006852 Ga0075433_10001252 Ga0075433_100012529 332
22 3300009147 Ga0114129_10231061 Ga0114129_102310612 332
23 3300009148 Ga0105243_10234088 Ga0105243_102340881 332
24 3300013297 Ga0157378_10075060 Ga0157378_100750602 332
25 3300025926 Ga0207659_10200083 Ga0207659_102000831 332
26 3300026075 Ga0207708_10178104 Ga0207708_101781042 332
27 3300026118 Ga0207675_100340475 Ga0207675_1003404751 332
28 3300031691 Ga0316579_10002324 Ga0316579_100023246 332
29 3300031691 Ga0316579_10013644 Ga0316579_100136443 332
30 3300031691 Ga0316579_10018295 Ga0316579_100182953 332
31 3300031733 Ga0316577_10001011 Ga0316577_100010114 332
32 3300031733 Ga0316577_10002158 Ga0316577_100021588 332
33 3300031733 Ga0316577_10017440 Ga0316577_100174403 332
34 3300031733 Ga0316577_10026445 Ga0316577_100264452 332
35 3300031733 Ga0316577_10026485 Ga0316577_100264852 332
36 3300031733 Ga0316577_10034886 Ga0316577_100348862 332
37 3300031733 Ga0316577_10061192 Ga0316577_100611922 332
38 3300036647 Ga0316582_0064104 Ga0316582_0064104_948_1988 332
39 3300036647 Ga0316582_0095183 Ga0316582_0095183_254_1294 332
40 3300036712 Ga0316584_0001667 Ga0316584_0001667_2531_3574 332
41 3300036712 Ga0316584_0013684 Ga0316584_0013684_1037_2095 332
42 3300036712 Ga0316584_0014612 Ga0316584_0014612_3758_4804 332
43 3300036712 Ga0316584_0015282 Ga0316584_0015282_3192_4235 332
44 3300036712 Ga0316584_0072144 Ga0316584_0072144_822_1862 332
45 3300036712 Ga0316584_0137169 Ga0316584_0137169_579_1619 332
46 3300037588 Ga0316581_0001255 Ga0316581_0001255_1118_2164 332
47 3300037588 Ga0316581_0010749 Ga0316581_0010749_219_1244 332
48 3300048911 Ga0496108_0000014 Ga0496108_0000014_175140_176159 332
49 3300048913 Ga0496110_0073292 Ga0496110_0073292_1886_2905 332
50 3300005295 Ga0065707_10104758 Ga0065707_101047583 333
51 3300005340 Ga0070689_100337504 Ga0070689_1003375042 333
52 3300005444 Ga0070694_100111212 Ga0070694_1001112122 333
53 3300005471 Ga0070698_100006029 Ga0070698_1000060296 333
54 3300005471 Ga0070698_100090434 Ga0070698_1000904345 333
55 3300005471 Ga0070698_100224073 Ga0070698_1002240731 333
56 3300005518 Ga0070699_100094887 Ga0070699_1000948874 333
57 3300005549 Ga0070704_100132134 Ga0070704_1001321342 333
58 3300005617 Ga0068859_100084147 Ga0068859_1000841474 333
59 3300005985 Ga0081539_10001676 Ga0081539_100016763 333
60 3300006880 Ga0075429_100016580 Ga0075429_1000165804 333
61 3300006880 Ga0075429_100188042 Ga0075429_1001880422 333
62 3300006931 Ga0097620_100084146 Ga0097620_1000841463 333
63 3300011119 Ga0105246_10011147 Ga0105246_100111473 333
64 3300031691 Ga0316579_10060497 Ga0316579_100604971 333
65 3300031995 Ga0307409_100136833 Ga0307409_1001368332 333
66 3300032002 Ga0307416_100288537 Ga0307416_1002885372 333
67 3300032126 Ga0307415_100448018 Ga0307415_1004480181 333
68 3300036647 Ga0316582_0001810 Ga0316582_0001810_7325_8344 333
69 3300044673 Ga0453683_0051934 Ga0453683_0051934_1455_2462 333
70 3300045051 Ga0451576_0491620 Ga0451576_0491620_244_1245 333
71 3300049576 Ga0501040_0250149 Ga0501040_0250149_227_1228 333
72 3300049588 Ga0501072_0204882 Ga0501072_0204882_371_1372 333
73 3300049591 Ga0501075_0003701 Ga0501075_0003701_8269_9270 333
74 3300049592 Ga0501076_0179155 Ga0501076_0179155_163_1164 333
75 3300049741 Ga0501079_0066964 Ga0501079_0066964_1605_2606 333
76 3300050507 nmdc:mga05p37_181929_c1 nmdc:mga05p37_181929_c1_869_1870 333
77 3300050508 nmdc:mga09592_348507_c1 nmdc:mga09592_348507_c1_100_1101 333
78 3300050508 nmdc:mga09592_398943_c1 nmdc:mga09592_398943_c1_55_1056 333
79 3300050510 nmdc:mga06r32_248279_c1 nmdc:mga06r32_248279_c1_611_1612 333
80 3300054114 Ga0501084_0116880 Ga0501084_0116880_727_1728 333
81 3300061734 Ga0530510_0235886 Ga0530510_0235886_238_1239 333
82 3300044673 Ga0453683_0157258 Ga0453683_0157258_233_1240 335
83 2162886007 SwRhRL2b_contig_539157 SwRhRL2b_0476.00004610 339
84 3300005289 Ga0065704_10000232 Ga0065704_1000023234 339
85 3300005295 Ga0065707_10083475 Ga0065707_100834751 339
86 3300005444 Ga0070694_100259046 Ga0070694_1002590462 339
87 3300005467 Ga0070706_100119927 Ga0070706_1001199271 339
88 3300006846 Ga0075430_100135772 Ga0075430_1001357723 339
89 3300006847 Ga0075431_100328138 Ga0075431_1003281381 339
90 3300006880 Ga0075429_100011624 Ga0075429_1000116246 339
91 3300006880 Ga0075429_100154928 Ga0075429_1001549282 339
92 3300009147 Ga0114129_10009225 Ga0114129_100092255 339
93 3300009147 Ga0114129_10029627 Ga0114129_100296273 339
94 3300009147 Ga0114129_10107200 Ga0114129_101072001 339
95 3300009147 Ga0114129_10126363 Ga0114129_101263634 339
96 3300044673 Ga0453683_0044056 Ga0453683_0044056_512_1552 339
97 3300044712 Ga0453684_0001473 Ga0453684_0001473_23780_24808 339
98 3300044712 Ga0453684_0207940 Ga0453684_0207940_776_1804 339
99 3300045051 Ga0451576_0374245 Ga0451576_0374245_358_1377 339
100 3300050507 nmdc:mga05p37_14031_c1 nmdc:mga05p37_14031_c1_7384_8427 339
101 3300050507 nmdc:mga05p37_21730_c1 nmdc:mga05p37_21730_c1_4382_5401 339
102 3300050507 nmdc:mga05p37_27673_c1 nmdc:mga05p37_27673_c1_3803_4822 339
103 3300050508 nmdc:mga09592_11470_c1 nmdc:mga09592_11470_c1_4722_5741 339
104 3300050508 nmdc:mga09592_119626_c1 nmdc:mga09592_119626_c1_584_1603 339
105 3300050509 nmdc:mga0qj67_176638_c1 nmdc:mga0qj67_176638_c1_214_1233 339
106 3300050510 nmdc:mga06r32_395470_c1 nmdc:mga06r32_395470_c1_46_1068 339

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00348

polyprenyl_synt

Polyprenyl synthetase

48

303

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
1wy0-assembly1.cif.gz_A-2 crystal structure of geranylgeranyl pyrophosphate synthetase from pyrococcus horikoshii ot3 0.9351 4 338
5jfq-assembly1.cif.gz_B geranylgeranyl pyrophosphate synthetase from archaeon geoglobus acetivorans 0.9108 8 337
5ayp-assembly1.cif.gz_A crystal structure of bacillus stearothermophilus farnesyl pyrophosphate synthase 0.9059 10 337
1wy0-assembly1.cif.gz_A-2 crystal structure of geranylgeranyl pyrophosphate synthetase from pyrococcus horikoshii ot3 0.9047 4 338
3mzv-assembly1.cif.gz_A crystal structure of a decaprenyl diphosphate synthase from rhodobacter capsulatus 0.9024 7 339
ID Description Score Start End Superfamily
1wy0A00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9351 4 338 1.10.600.10
af_Q58270_13_326_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9206 1 337 1.10.600.10
af_Q58270_13_326_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.915 1 337 1.10.600.10
af_P9WKH1_23_358_1.10.600.10 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9086 4 338 1.10.600.10
5aypA00 Mainly Alpha;Orthogonal Bundle;Farnesyl Diphosphate Synthase;Farnesyl Diphosphate Synthase 0.9059 10 337 1.10.600.10
ID Description Score Start End GO Terms
AF-A0A399ZIF0-F1-model_v4 Polyprenyl synthetase 0.9927 1 339 GO:0004659
GO:0008299
AF-A0A2M8CU33-F1-model_v4 Polyprenyl synthetase 0.9902 4 339 GO:0004659
GO:0008299
AF-A0A399ZIF0-F1-model_v4 Polyprenyl synthetase 0.9898 1 339 GO:0004659
GO:0008299
AF-A0A1F8KFD9-F1-model_v4 Polyprenyl synthetase 0.9854 4 339 GO:0004659
GO:0008299
AF-A0A7C7W9X3-F1-model_v4 Polyprenyl synthetase family protein 0.9854 4 224 GO:0004659
GO:0008299

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