F022191

General Info

Members Datasets Scaffolds Average Seq Length
103 60 207 503

Family's Representative Sequence

Representative Sequence 3300042876|Ga0451577_0044515|Ga0451577_0044515_655_2247
Length 530
Sequence LISVLKGHNCYKIKLNLAGIFTGEIMQDRKSQILQPIFDARIKRFYKAVKHPAESQHRILNSLLYKAQETETGMKYHFHEINNYADFCNRVLIEDYNSFQPVIERIIKGERDVLWPGKINWFAKSSGTSESKSKFIPISTESLKECHFKAGKDLLALIYKNNPFAKIHNGFGVTLGGSLKNNPYRSDSFIGDLSAVLLSNVPFWTRIWQQPDSEISLLEDWEIKIDKIAESTLNKRITYITGVPTWTTILIKRILEITGKTNIKEVWPHLEVYLHGGVSFEPYRDLYKKLIQDDKFLYLESYNASEGFFGIQDEKDQQDMVLLVDHGIFYEFIPMNEFGREDQKAIPLEEVETDKNYAIVISTNTGLWRYIIGDTIKFTSTFPFRFRITGRTKSFINAFGEELIVDNVEKAIVQACTQTSAQITDYTVAPVYFSDNTSGTHEWMVEFFKEPDDFDLFCKILDESLKSLNSDYEAKRHKNIALTFPIINKVETGGFYNWMKQIGKLGGQNKVPRLYNGRKYVDSMKEYLGI

Samples

Sample ID Description Type Environment
1 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
7 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
8 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
9 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
10 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
11 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
12 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
13 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
14 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
15 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
16 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
17 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
18 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
19 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
20 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
21 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
23 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
24 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
25 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
26 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
27 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
28 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
29 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
30 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
31 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
32 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
33 3300044672 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - COA3E Metagenome Unclassified
34 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
35 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
36 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
37 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
38 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
39 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
40 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
41 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
42 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
43 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
44 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
45 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
46 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
47 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
48 3300049670 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought Metagenome Rhizosphere
49 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
50 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
51 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
52 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
53 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
54 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
55 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
56 2881955468 Edaphocola flava HME-24 Isolate Rhizosphere
57 2884634485 Algoriphagus kandeliae XY-J91 Isolate Unclassified
58 2890804823 Fluviicola sp. SGL-29 Isolate Rhizosphere
59 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
60 2919692658 Algoriphagus sp. 4150 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 95.15
Metatranscriptomes 0
Isolates 4.85

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.68
Nodule 0
Rhizoplane 0
Rhizosphere 74.76
Stem 0
Stem Tuber 0
Unclassified 1.94

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0451577_0044515 3300042876 Bacteria 3974
2 rootH1_10001885 3300003316 Bacteria 10489
3 rootH1_10011238 3300003316 Bacteria 18907
4 rootH2_10017766 3300003320 Bacteria 41125
5 rootL2_10010156 3300003322 Bacteria 21183
6 rootL2_10035247 3300003322 Bacteria 11890
7 rootL2_10196590 3300003322 Bacteria 7062
8 rootH1_10000619 3300003316 Bacteria 3651
9 rootH1_10000619 3300003323 Bacteria 100005
10 rootH1_10043701 3300003323 Bacteria 13292
11 rootH1_10095576 3300003323 Bacteria 5959
12 Ga0055531_10000206 3300003794 Bacteria 64979
13 Ga0065165_1000417 3300005262 Bacteria 67578
14 Ga0065704_10070133 3300005289 Bacteria 1266035
15 Ga0065704_10091223 3300005289 Bacteria 2724
16 Ga0068856_100012715 3300005614 Bacteria 8152
17 Ga0075431_100291135 3300006847 Bacteria 1652
18 Ga0111539_10003057 3300009094 Bacteria 22170
19 Ga0111539_10009197 3300009094 Bacteria 12490
20 Ga0105242_10037091 3300009176 Unclassified 3914
21 Ga0163163_10114654 3300014325 Bacteria 2726
22 Ga0157380_10000089 3300014326 Bacteria 50091
23 Ga0157380_10001699 3300014326 Bacteria 14541
24 Ga0209050_1001862 3300025298 Bacteria 20327
25 Ga0209050_1017376 3300025298 Bacteria 2873
26 Ga0209257_1000007 3300025304 Bacteria 1564415
27 Ga0207695_10163047 3300025913 Bacteria 2159
28 Ga0207686_10022245 3300025934 Bacteria 3649
29 Ga0207702_10024265 3300026078 Bacteria 5031
30 Ga0207428_10039254 3300027907 Bacteria 3844
31 Ga0268266_10056375 3300028379 Bacteria 3381
32 Ga0265318_10023206 3300028577 Bacteria 2474
33 Ga0307515_10000094 3300028794 Bacteria 210723
34 Ga0307515_10062179 3300028794 Bacteria 5280
35 Ga0265327_10005670 3300031251 Bacteria 10333
36 Ga0265316_10000814 3300031344 Bacteria 34484
37 Ga0265316_10001793 3300031344 Bacteria 22620
38 Ga0265316_10047128 3300031344 Bacteria 3411
39 Ga0307509_10012536 3300031507 Bacteria 10135
40 Ga0307509_10020983 3300031507 Bacteria 7401
41 Ga0307408_100000141 3300031548 Bacteria 80201
42 Ga0307408_100034357 3300031548 Bacteria 3552
43 Ga0307409_100230133 3300031995 Bacteria 1680
44 Ga0307416_100001218 3300032002 Bacteria 13877
45 Ga0307414_10000056 3300032004 Bacteria 113603
46 Ga0307415_100000712 3300032126 Bacteria 14860
47 Ga0373927_0014813 3300035695 Bacteria 5156
48 Ga0451577_0000217 3300042876 Bacteria 119582
49 Ga0451577_0002214 3300042876 Bacteria 23673
50 Ga0451577_0003644 3300042876 Bacteria 16925
51 Ga0451577_0010050 3300042876 Bacteria 9067
52 Ga0451577_0028238 3300042876 Bacteria 5076
53 Ga0451577_0057849 3300042876 Bacteria 3455
54 Ga0466982_0036664 3300044672 Bacteria 2946
55 Ga0453683_0003341 3300044673 Bacteria 11859
56 Ga0453683_0012915 3300044673 Bacteria 5460
57 Ga0453683_0039577 3300044673 Bacteria 2963
58 Ga0453683_0079736 3300044673 Bacteria 2050
59 Ga0453684_0000225 3300044712 Bacteria 245902
60 Ga0453684_0000525 3300044712 Bacteria 146588
61 Ga0453684_0000572 3300044712 Bacteria 137431
62 Ga0453684_0002975 3300044712 Bacteria 39581
63 Ga0453684_0003784 3300044712 Bacteria 33412
64 Ga0453684_0004415 3300044712 Bacteria 29741
65 Ga0453684_0033045 3300044712 Bacteria 7221
66 Ga0453684_0076382 3300044712 Bacteria 4206
67 Ga0453684_0117466 3300044712 Bacteria 3219
68 Ga0453684_0137121 3300044712 Bacteria 2927
69 Ga0453684_0138497 3300044712 Unclassified 2910
70 Ga0451576_0000008 3300045051 Bacteria 746156
71 Ga0451576_0001968 3300045051 Bacteria 32669
72 Ga0451576_0011195 3300045051 Bacteria 10220
73 Ga0451576_0027645 3300045051 Bacteria 6089
74 Ga0451576_0034053 3300045051 Bacteria 5412
75 Ga0451576_0034759 3300045051 Bacteria 5352
76 Ga0451576_0048386 3300045051 Bacteria 4467
77 Ga0451576_0186953 3300045051 Bacteria 2163
78 Ga0495638_0000004 3300046460 Bacteria 700795
79 Ga0495625_0039061 3300046660 Bacteria 3469
80 Ga0501031_0001398 3300049568 Bacteria 14914
81 Ga0501032_0005095 3300049569 Bacteria 9808
82 Ga0501032_0009227 3300049569 Bacteria 7151
83 Ga0501033_0000027 3300049570 Bacteria 166571
84 Ga0501034_0004306 3300049571 Bacteria 15863
85 Ga0501036_0028194 3300049572 Bacteria 4747
86 Ga0501038_0002571 3300049574 Bacteria 16930
87 Ga0501039_0010876 3300049575 Bacteria 6934
88 Ga0501043_0000539 3300049579 Bacteria 34110
89 Ga0501223_001905 3300049663 Bacteria 4699
90 Ga0501236_003396 3300049670 Bacteria 1852
91 Ga0501035_0013531 3300049822 Bacteria 7531
92 Ga0501045_0004173 3300049824 Bacteria 9982
93 nmdc:mga08y16_2195_c1 3300050511 Bacteria 20025
94 Ga0500655_002164 3300053133 Bacteria 3632
95 Ga0500604_0004115 3300053151 Bacteria 3876
96 Ga0500616_0000015 3300053153 Bacteria 633259
97 Ga0500622_0000049 3300053156 Bacteria 145793
98 Ga0500622_0000056 3300053156 Bacteria 142254
99 Ga0500622_0004268 3300053156 Bacteria 9072
100 2881958032 2881955468 Bacteria 3545609
101 2884635864 2884634485 Bacteria 3928637
102 2890807329 2890804823 Bacteria 3717572
103 2904448825 2904445276 Bacteria 5310396
104 2919694969 2919692658 Bacteria 5943958
105 Ga0451577_0044515
106 rootH1_10001885
107 rootH1_10011238
108 rootH2_10017766
109 rootL2_10010156
110 rootL2_10035247
111 rootL2_10196590
112 rootH1_10000619
113 rootH1_10043701
114 rootH1_10095576
115 Ga0055531_10000206
116 Ga0065165_1000417
117 Ga0065704_10070133
118 Ga0065704_10091223
119 Ga0068856_100012715
120 Ga0075431_100291135
121 Ga0111539_10003057
122 Ga0111539_10009197
123 Ga0105242_10037091
124 Ga0163163_10114654
125 Ga0157380_10000089
126 Ga0157380_10001699
127 Ga0209050_1001862
128 Ga0209050_1017376
129 Ga0209257_1000007
130 Ga0207695_10163047
131 Ga0207686_10022245
132 Ga0207702_10024265
133 Ga0207428_10039254
134 Ga0268266_10056375
135 Ga0265318_10023206
136 Ga0307515_10000094
137 Ga0307515_10062179
138 Ga0265327_10005670
139 Ga0265316_10000814
140 Ga0265316_10001793
141 Ga0265316_10047128
142 Ga0307509_10012536
143 Ga0307509_10020983
144 Ga0307408_100000141
145 Ga0307408_100034357
146 Ga0307409_100230133
147 Ga0307416_100001218
148 Ga0307414_10000056
149 Ga0307415_100000712
150 Ga0373927_0014813
151 Ga0451577_0000217
152 Ga0451577_0002214
153 Ga0451577_0003644
154 Ga0451577_0010050
155 Ga0451577_0028238
156 Ga0451577_0057849
157 Ga0466982_0036664
158 Ga0453683_0003341
159 Ga0453683_0012915
160 Ga0453683_0039577
161 Ga0453683_0079736
162 Ga0453684_0000225
163 Ga0453684_0000525
164 Ga0453684_0000572
165 Ga0453684_0002975
166 Ga0453684_0003784
167 Ga0453684_0004415
168 Ga0453684_0033045
169 Ga0453684_0076382
170 Ga0453684_0117466
171 Ga0453684_0137121
172 Ga0453684_0138497
173 Ga0451576_0000008
174 Ga0451576_0001968
175 Ga0451576_0011195
176 Ga0451576_0027645
177 Ga0451576_0034053
178 Ga0451576_0034759
179 Ga0451576_0048386
180 Ga0451576_0186953
181 Ga0495638_0000004
182 Ga0495625_0039061
183 Ga0501031_0001398
184 Ga0501032_0005095
185 Ga0501032_0009227
186 Ga0501033_0000027
187 Ga0501034_0004306
188 Ga0501036_0028194
189 Ga0501038_0002571
190 Ga0501039_0010876
191 Ga0501043_0000539
192 Ga0501223_001905
193 Ga0501236_003396
194 Ga0501035_0013531
195 Ga0501045_0004173
196 nmdc:mga08y16_2195_c1
197 Ga0500655_002164
198 Ga0500604_0004115
199 Ga0500616_0000015
200 Ga0500622_0000049
201 Ga0500622_0000056
202 Ga0500622_0004268
203 2881958032
204 2884635864
205 2890807329
206 2904448825
207 2919694969

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03321

GH3

GH3 auxin-responsive promoter

41

296

0.97

PF23572

406

519

0.96

PF23571

321

391

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
4epm-assembly1.cif.gz_A crystal structure of arabidopsis gh3.12 (pbs3) in complex with amp 0.7823 13 502
4b2g-assembly2.cif.gz_B crystal structure of an indole-3-acetic acid amido synthase from vitis vinifera involved in auxin homeostasis 0.7786 12 502
4eq4-assembly3.cif.gz_A crystal structure of seleno-methionine derivatized gh3.12 0.7726 11 498
4b2g-assembly1.cif.gz_A crystal structure of an indole-3-acetic acid amido synthase from vitis vinifera involved in auxin homeostasis 0.7703 12 502
7vka-assembly1.cif.gz_A crystal structure of gh3.6 in complex with an inhibitor 0.7684 6 502
ID Description Score Start End Superfamily
af_Q6I581_25_430_3.40.50.12780 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;ANL, N-terminal domain 0.8412 36 368 3.40.50.12780
af_Q6ZLA7_1_478_3.40.50.12780 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;ANL, N-terminal domain 0.823 6 427 3.40.50.12780
af_P0C0M3_23_431_1.20.1530.20 Mainly Alpha;Up-down Bundle;Na+/H+ antiporter like fold; 0.8096 28 367 1.20.1530.20
af_A0A1P8AV88_9_553_3.40.50.12780 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;ANL, N-terminal domain 0.7922 19 493 3.40.50.12780
af_Q8LQM5_99_434_3.40.50.12780 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;ANL, N-terminal domain 0.7879 93 364 3.40.50.12780
ID Description Score Start End GO Terms
AF-A0A3D5RYD2-F1-model_v4 GH3 auxin-responsive promoter 0.984 1 264 GO:0005737
GO:0016881
AF-A0A7W1UR33-F1-model_v4 GH3 auxin-responsive promoter family protein 0.9828 13 361 GO:0005737
GO:0016881
AF-A0A2N2XWW8-F1-model_v4 GH3 auxin-responsive promoter 0.9826 371 507
AF-A0A4Q3PZI4-F1-model_v4 deleted 0.9804 1 293
AF-A0A520BEU6-F1-model_v4 GH3 auxin-responsive promoter 0.9795 369 506

Map