F008945

General Info

Members Datasets Scaffolds Average Seq Length
101 72 90 202

Family's Representative Sequence

Representative Sequence 3300013100|Ga0157373_10309512|Ga0157373_103095122
Length 219
Sequence MAMFEALYEFAKSKMIRMEQLSFFPEAGQTPGLPPELLEYHPGLFSERECALLLHKFIVQSPWQQKVVKMYDKEVVTPRLCAWYADEETYDYTSLRRSTPNKWTPELVAIKQKVEQIAGVKFNSVLLNYYRDGNDSVAWHSDNEKALGKYPVIASVSFGQVRSFDIRYKQDHSEKYSIKLESGALMIMKGDLQQNWEHRIAKSLRPMTARVNLTFRVVI

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2582581278 Chryseobacterium sp. CF365 Isolate Rhizosphere
3 2585428182 Chryseobacterium sp. YR477 Isolate Rhizosphere
4 2585428183 Chryseobacterium sp. YR485 Isolate Rhizosphere
5 2588254257 Chryseobacterium sp. YR203 Isolate Rhizosphere
6 2738543023 Pedobacter sp. OK628 Isolate Unclassified
7 2739367663 Pedobacter sp. YR510 Isolate Unclassified
8 2751185877 Chryseobacterium artocarpi UTM-3 Isolate Rhizosphere
9 2765235839 Chryseobacterium indologenes AA5 Isolate Unclassified
10 2816332188 Chryseobacterium aquifrigidense 110 (version 2) Isolate Unclassified
11 2889290771 Chryseobacterium sp. PvR013 Isolate Rhizosphere
12 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
13 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
14 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
15 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
16 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
17 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
18 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
22 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
23 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
24 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
25 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
26 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
27 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
28 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
29 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
30 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
31 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
32 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
33 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
34 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
35 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
36 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
37 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
38 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
39 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
41 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
47 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
48 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
49 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
50 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
51 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
52 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
53 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
54 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
55 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
56 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
57 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
58 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
59 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
60 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
61 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
62 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
63 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
64 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
65 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
66 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
67 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
68 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
69 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
70 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
71 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
72 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.11
Metatranscriptomes 0
Isolates 10.89

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.91
Nodule 0
Rhizoplane 0
Rhizosphere 76.24
Stem 0
Stem Tuber 0
Unclassified 14.85

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_3412754 2162886007 Bacteria 11884
2 JGI25162J39368_1002111 3300002737 Bacteria 8452
3 JGI25165J46597_1000414 3300003214 Bacteria 44920
4 rootH1_10089696 3300003316 Bacteria 2855
5 rootH1_10089696 3300003323 Bacteria 23278
6 rootL2_10153593 3300003322 Bacteria 4520
7 Ga0055534_1005361 3300003784 Bacteria 3448
8 Ga0065714_10002207 3300005288 Bacteria 86097
9 Ga0065714_10006447 3300005288 Bacteria 5351
10 Ga0065704_10070217 3300005289 Bacteria 69033
11 Ga0068853_100044180 3300005539 Bacteria 3814
12 Ga0068855_100145626 3300005563 Bacteria 2697
13 Ga0105237_10000206 3300009545 Bacteria 84005
14 Ga0105237_10006647 3300009545 Bacteria 12780
15 Ga0105238_10153657 3300009551 Bacteria 2276
16 Ga0105238_10494226 3300009551 Bacteria 1224
17 Ga0105238_10857654 3300009551 Bacteria 925
18 Ga0105239_10000006 3300010375 Bacteria 442319
19 Ga0105239_10000782 3300010375 Bacteria 45096
20 Ga0105239_10002630 3300010375 Bacteria 22684
21 Ga0105239_10003747 3300010375 Bacteria 18509
22 Ga0157373_10000440 3300013100 Bacteria 32951
23 Ga0157373_10008961 3300013100 Bacteria 7402
24 Ga0157373_10071353 3300013100 Bacteria 2453
25 Ga0157373_10309512 3300013100 Bacteria 1122
26 Ga0157371_10000255 3300013102 Bacteria 74280
27 Ga0157371_10002650 3300013102 Bacteria 16949
28 Ga0157370_10001543 3300013104 Bacteria 28500
29 Ga0157370_10004295 3300013104 Bacteria 16400
30 Ga0157370_10028994 3300013104 Bacteria 5438
31 Ga0157370_10038092 3300013104 Bacteria 4654
32 Ga0157370_10536701 3300013104 Bacteria 1073
33 Ga0157369_10002137 3300013105 Bacteria 23838
34 Ga0157374_10000758 3300013296 Bacteria 28222
35 Ga0163162_11207255 3300013306 Bacteria 858
36 Ga0157372_10286192 3300013307 Bacteria 1917
37 Ga0157375_10000460 3300013308 Bacteria 37011
38 Ga0157375_10496174 3300013308 Bacteria 1385
39 Ga0182006_1001021 3300015261 Bacteria 18288
40 Ga0163161_10000341 3300017792 Bacteria 39792
41 Ga0163161_10664217 3300017792 Bacteria 865
42 Ga0213872_10099745 3300021361 Bacteria 1295
43 Ga0207427_100098 3300025231 Bacteria 122817
44 Ga0209437_100008 3300025233 Bacteria 921142
45 Ga0209026_1000595 3300025250 Bacteria 23580
46 Ga0209233_1000024 3300025261 Bacteria 695418
47 Ga0209455_1009299 3300025272 Bacteria 2593
48 Ga0209675_1000088 3300025291 Bacteria 147320
49 Ga0207654_10011049 3300025911 Bacteria 4595
50 Ga0207654_10146437 3300025911 Bacteria 1512
51 Ga0207695_10000235 3300025913 Bacteria 146984
52 Ga0207695_10151651 3300025913 Bacteria 2257
53 Ga0207671_10000286 3300025914 Bacteria 74604
54 Ga0207671_10002420 3300025914 Bacteria 19979
55 Ga0207671_10091921 3300025914 Bacteria 2287
56 Ga0207694_10009543 3300025924 Bacteria 7320
57 Ga0207694_10340055 3300025924 Bacteria 1241
58 Ga0207694_10662402 3300025924 Bacteria 880
59 Ga0207639_10042537 3300026041 Bacteria 3405
60 Ga0207639_10269472 3300026041 Bacteria 1493
61 Ga0307412_10000049 3300031911 Bacteria 151588
62 Ga0307414_10000142 3300032004 Bacteria 48979
63 Ga0307414_10092308 3300032004 Bacteria 2253
64 Ga0307415_100279034 3300032126 Bacteria 1373
65 Ga0436365_0329989 3300039437 Bacteria 1199
66 Ga0436361_0747603 3300039447 Bacteria 15844
67 Ga0439465_0000202 3300041413 Bacteria 15766
68 Ga0451837_0296194 3300041494 Unclassified 793
69 Ga0466961_0011377 3300044693 Bacteria 5690
70 Ga0466957_0600008 3300044842 Unclassified 771
71 Ga0466959_0490499 3300045049 Unclassified 831
72 Ga0495583_0313904 3300046506 Unclassified 622
73 Ga0495606_0000102 3300046507 Bacteria 146051
74 Ga0495643_0040947 3300046522 Bacteria 2528
75 Ga0495648_0043187 3300046524 Unclassified 2829
76 Ga0495663_0000703 3300046525 Bacteria 11501
77 Ga0495654_0000001 3300046530 Bacteria 1513197
78 Ga0495633_0000001 3300046558 Bacteria 801972
79 Ga0495661_0002165 3300046665 Bacteria 15358
80 Ga0495661_0005975 3300046665 Bacteria 8593
81 Ga0495670_0220116 3300046691 Bacteria 1008
82 Ga0495677_0017180 3300047445 Bacteria 2623
83 Ga0496117_0066306 3300048920 Bacteria 2450
84 Ga0496118_0081691 3300048921 Bacteria 2268
85 Ga0496118_0192519 3300048921 Bacteria 1218
86 Ga0496119_0326227 3300048922 Bacteria 750
87 Ga0496122_0000277 3300048925 Bacteria 114200
88 Ga0496124_0016341 3300048927 Bacteria 7061
89 Ga0500608_023082 3300053122 Unclassified 2891
90 Ga0501084_0018789 3300054114 Bacteria 5755

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2585428183 2588212697 169
2 3300013100 Ga0157373_10071353 Ga0157373_100713532 175
3 3300041494 Ga0451837_0296194 Ga0451837_0296194_30_578 182
4 3300044842 Ga0466957_0600008 Ga0466957_0600008_32_580 182
5 3300013308 Ga0157375_10000460 Ga0157375_1000046020 185
6 3300005539 Ga0068853_100044180 Ga0068853_1000441804 187
7 3300026041 Ga0207639_10042537 Ga0207639_100425374 187
8 3300046506 Ga0495583_0313904 Ga0495583_0313904_47_610 187
9 3300021361 Ga0213872_10099745 Ga0213872_100997452 189
10 3300039447 Ga0436361_0747603 Ga0436361_0747603_2801_3370 189
11 3300046665 Ga0495661_0002165 Ga0495661_0002165_1847_2455 191
12 iso_pu_bacteria 2582581278 2585141750 196
13 iso_pu_bacteria 2585428182 2588209159 196
14 iso_pu_bacteria 2585428182 2588209508 196
15 iso_pu_bacteria 2588254257 2590612616 196
16 iso_pu_bacteria 2765235839 2765576604 196
17 iso_pu_bacteria 2889290771 2889292953 196
18 3300039437 Ga0436365_0329989 Ga0436365_0329989_156_761 197
19 iso_pu_bacteria 2751185877 2753672295 197
20 iso_pu_bacteria 2816332188 2816872505 197
21 iso_pu_bacteria 2738543023 2739301412 198
22 iso_pu_bacteria 2739367663 2739647701 198
23 3300013100 Ga0157373_10008961 Ga0157373_100089611 199
24 3300013104 Ga0157370_10004295 Ga0157370_1000429512 199
25 3300003316 rootH1_10089696 rootH1_100896964 200
26 3300003784 Ga0055534_1005361 Ga0055534_10053615 200
27 3300025291 Ga0209675_1000088 Ga0209675_100008860 200
28 3300041413 Ga0439465_0000202 Ga0439465_0000202_4797_5417 200
29 3300046525 Ga0495663_0000703 Ga0495663_0000703_10012_10635 200
30 3300046530 Ga0495654_0000001 Ga0495654_0000001_1423170_1423781 200
31 3300046558 Ga0495633_0000001 Ga0495633_0000001_579508_580113 200
32 3300048921 Ga0496118_0192519 Ga0496118_0192519_504_1115 200
33 3300048922 Ga0496119_0326227 Ga0496119_0326227_96_704 200
34 3300048925 Ga0496122_0000277 Ga0496122_0000277_46386_46994 200
35 3300005288 Ga0065714_10002207 Ga0065714_1000220740 201
36 3300013102 Ga0157371_10000255 Ga0157371_1000025573 201
37 3300013104 Ga0157370_10001543 Ga0157370_100015439 201
38 3300013104 Ga0157370_10028994 Ga0157370_100289943 201
39 3300013104 Ga0157370_10038092 Ga0157370_100380923 201
40 3300013105 Ga0157369_10002137 Ga0157369_1000213716 201
41 3300046522 Ga0495643_0040947 Ga0495643_0040947_793_1407 201
42 3300046530 Ga0495654_0000001 Ga0495654_0000001_1164331_1164945 201
43 3300048920 Ga0496117_0066306 Ga0496117_0066306_1127_1870 201
44 3300048921 Ga0496118_0081691 Ga0496118_0081691_777_1550 201
45 3300048927 Ga0496124_0016341 Ga0496124_0016341_341_952 201
46 2162886007 SwRhRL2b_contig_3412754 SwRhRL2b_0083.00005870 202
47 3300002737 JGI25162J39368_1002111 JGI25162J39368_10021117 202
48 3300003214 JGI25165J46597_1000414 JGI25165J46597_100041436 202
49 3300003322 rootL2_10153593 rootL2_101535933 202
50 3300005288 Ga0065714_10006447 Ga0065714_100064474 202
51 3300005289 Ga0065704_10070217 Ga0065704_1007021761 202
52 3300005563 Ga0068855_100145626 Ga0068855_1001456262 202
53 3300009545 Ga0105237_10000206 Ga0105237_100002064 202
54 3300009545 Ga0105237_10006647 Ga0105237_100066479 202
55 3300009551 Ga0105238_10153657 Ga0105238_101536572 202
56 3300009551 Ga0105238_10494226 Ga0105238_104942262 202
57 3300009551 Ga0105238_10857654 Ga0105238_108576542 202
58 3300010375 Ga0105239_10000006 Ga0105239_10000006325 202
59 3300010375 Ga0105239_10000782 Ga0105239_1000078224 202
60 3300010375 Ga0105239_10002630 Ga0105239_1000263010 202
61 3300010375 Ga0105239_10003747 Ga0105239_100037474 202
62 3300013100 Ga0157373_10000440 Ga0157373_1000044012 202
63 3300013100 Ga0157373_10309512 Ga0157373_103095122 202
64 3300013102 Ga0157371_10002650 Ga0157371_100026508 202
65 3300013104 Ga0157370_10536701 Ga0157370_105367012 202
66 3300013296 Ga0157374_10000758 Ga0157374_1000075819 202
67 3300013306 Ga0163162_11207255 Ga0163162_112072551 202
68 3300013307 Ga0157372_10286192 Ga0157372_102861923 202
69 3300013308 Ga0157375_10496174 Ga0157375_104961742 202
70 3300015261 Ga0182006_1001021 Ga0182006_100102111 202
71 3300017792 Ga0163161_10000341 Ga0163161_100003416 202
72 3300017792 Ga0163161_10664217 Ga0163161_106642171 202
73 3300025231 Ga0207427_100098 Ga0207427_10009862 202
74 3300025233 Ga0209437_100008 Ga0209437_100008258 202
75 3300025250 Ga0209026_1000595 Ga0209026_100059512 202
76 3300025261 Ga0209233_1000024 Ga0209233_1000024401 202
77 3300025272 Ga0209455_1009299 Ga0209455_10092993 202
78 3300025911 Ga0207654_10011049 Ga0207654_100110495 202
79 3300025911 Ga0207654_10146437 Ga0207654_101464371 202
80 3300025913 Ga0207695_10000235 Ga0207695_1000023526 202
81 3300025913 Ga0207695_10151651 Ga0207695_101516514 202
82 3300025914 Ga0207671_10000286 Ga0207671_1000028624 202
83 3300025914 Ga0207671_10002420 Ga0207671_100024205 202
84 3300025914 Ga0207671_10091921 Ga0207671_100919212 202
85 3300025924 Ga0207694_10009543 Ga0207694_100095432 202
86 3300025924 Ga0207694_10340055 Ga0207694_103400552 202
87 3300025924 Ga0207694_10662402 Ga0207694_106624022 202
88 3300026041 Ga0207639_10269472 Ga0207639_102694723 202
89 3300031911 Ga0307412_10000049 Ga0307412_10000049100 202
90 3300032004 Ga0307414_10000142 Ga0307414_1000014229 202
91 3300032004 Ga0307414_10092308 Ga0307414_100923082 202
92 3300032126 Ga0307415_100279034 Ga0307415_1002790342 202
93 3300044693 Ga0466961_0011377 Ga0466961_0011377_1679_2311 202
94 3300045049 Ga0466959_0490499 Ga0466959_0490499_168_782 202
95 3300046507 Ga0495606_0000102 Ga0495606_0000102_113467_114075 202
96 3300046524 Ga0495648_0043187 Ga0495648_0043187_508_1119 202
97 3300046665 Ga0495661_0005975 Ga0495661_0005975_2818_3426 202
98 3300046691 Ga0495670_0220116 Ga0495670_0220116_44_655 202
99 3300047445 Ga0495677_0017180 Ga0495677_0017180_1142_1753 202
100 3300053122 Ga0500608_023082 Ga0500608_023082_292_903 202
101 3300054114 Ga0501084_0018789 Ga0501084_0018789_3525_4187 202

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF14560

Ubiquitin_2

Ubiquitin-like domain

92

157

0.92

PF13532

2OG-FeII_Oxy_2

2OG-Fe(II) oxygenase superfamily

38

216

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
3rzg-assembly1.cif.gz_A duplex interrogation by a direct dna repair protein in the search of damage 0.9001 16 202
3btz-assembly1.cif.gz_A crystal structure of human abh2 cross-linked to dsdna 0.8863 16 202
2iuw-assembly1.cif.gz_A-2 crystal structure of human abh3 in complex with iron ion and 2- oxoglutarate 0.8852 21 201
3s5a-assembly1.cif.gz_A abh2 cross-linked to undamaged dsdna-2 with cofactors 0.8744 16 202
3rzm-assembly1.cif.gz_A duplex interrogation by a direct dna repair protein in the search of damage 0.8682 21 202
ID Description Score Start End Superfamily
2iuwA00 Mainly Beta;Sandwich;Jelly Rolls;Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.8852 21 201 2.60.120.590
af_Q9SIE0_90_314_2.60.120.590 Mainly Beta;Sandwich;Jelly Rolls;Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.8817 21 202 2.60.120.590
3rzlA00 Mainly Beta;Sandwich;Jelly Rolls;Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.8614 16 202 2.60.120.590
af_L7N6A4_38_203_2.60.120.590 Mainly Beta;Sandwich;Jelly Rolls;Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.8561 33 199 2.60.120.590
af_I1MFT0_7_203_2.60.120.590 Mainly Beta;Sandwich;Jelly Rolls;Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.833 25 202 2.60.120.590
ID Description Score Start End GO Terms
AF-A0A432C9F2-F1-model_v4 Alpha-ketoglutarate-dependent dioxygenase AlkB 0.9812 105 202 GO:0006307
GO:0051213
AF-A0A7Y3C6G6-F1-model_v4 Alpha-ketoglutarate-dependent dioxygenase AlkB 0.9804 117 202 GO:0006307
GO:0008198
GO:0035516
GO:0051747
AF-A0A534AAZ2-F1-model_v4 Alpha-ketoglutarate-dependent dioxygenase AlkB 0.9784 121 201 GO:0006307
GO:0008198
GO:0035516
GO:0051747
AF-A0A4W5LK30-F1-model_v4 Fe2OG dioxygenase domain-containing protein 0.9782 114 202 GO:0005886
GO:0015250
AF-A0A6J6JAY5-F1-model_v4 Unannotated protein 0.978 86 201 GO:0006307
GO:0051213

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pLDDT pTM Quality
85.4 0.83 High
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Predicted Structure (AlphaFold2)

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