Scaffold Information

Sample ID 3300006173
Scaffold Ga0070716_100000016
Sample Name Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG
Length 91387
Fam Num 17
Taxonomy Bacteria
Environment Rhizosphere
Lineage Bacteria;Pseudomonadota;Alphaproteobacteria;Hyphomicrobiales;Rhizobiaceae;Ensifer;Ensifer

CRISPR Details

Start Coordinate: 9 End Coordinate: 5989
Position Repeat Spacer
9 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC AAGTCGCGCGCGAGATCCGCCGCCATCGCGAGTTTGT
82 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC CTCATACCAGGTCGATTGCGGACCGCCAACCTGCAAA
155 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC ATGTCGGGACGAGGAAACGCGTCGGTCGGCGGCGGAATGA
231 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC GTCCTCATCGTAAATTTTCCGGCCCTGCTCGAGT
301 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TCTCAAATCATAGATGGGAACGAAAACAAAAATCAAAA
375 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC CGATATCTGCCGCTGGCCTTTCAGGCTATCTCATACA
448 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TTTCAGACGCTCCCAGACTTGCGGCCGCGCGGGATC
520 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC CAGATATTGGAACCCGTTGAGGCTGACTCCGTTCT
591 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC CTGGAAAAGGGGCCGGGCACGATCGTTGTGCCGTAC
663 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC CTCAGCGCCGGCCGTTACGACCTCGAGGGCTGGGTGA
736 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TACACTGATCGCGTCACTGGCAACATCTATCGCTGCA
809 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC ATTAGACCGCTTGCGTTCATCGCTTCCAATAAACTCC
882 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC GCATCGCATGGCGTGGAGTTGTGGATCTTATCAGCGC
955 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC GCCCAACCGCGCGCGGCAATGCCGTTGCCGTTAAA
1026 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TGCCATAATAGAGACAACCTTCCTTTCTTTGGGTGCG
1099 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC GGCATGCAAAGGGCGTGGCCATAAGGATGGGCCTG
1170 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC AATTGCTCGAGGCCAGGGAAGAGATTGAAACATTA
1241 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC AAACGATTGCCGTGCTCACGACCCAGCGCGACGAGGCCCG
1317 GTATGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TTAATTACTCGCGGCTTGGCGAACTTGCGCCGGCGCG
1390 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC AGCGCTGGTTAGCCGATCTGTGCGGCACCGCGTTTTG
1463 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC ACCAGCAATTATGGGATCTCATTCAGCGATATAAACAGAT
1539 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC AATAAGACGCGGAAAGCGAACCAATGGCGAAAGCCT
1611 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TGGTGTAAGCGAGATATCATCGATGAGATTCTTCG
1682 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC CAACCGAGTCATCAACCCGAATACAGGGCAGCTTATTGG
1757 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC CTTTAATGTGTTTGGTGAGTGGCGTAGAGTTTGAATGT
1831 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC AACGACAGCGCGGTACGTCTAAAGGACGCGTTCG
1901 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC AAACAGTTGGAAGCGCAGTACAACGCCCTTGAGCAGGC
1975 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TTTCGGGTTTCGGGAGTCCATGCTTTTCTGCTGCGTGGT
2050 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TCGCACTGAATCAATGCGTTTTTACCATGGTAGCGGCTC
2125 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC ATGGAAAAGGGCGAGAGCAAAACTTCCGCCGCAACAGAAGGT
2203 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC CAGGCTAACCATTCAATAGGCTCATACTGCTGATAA
2275 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TTGCCGCATTAGAGGATGCTGATCCTTATTTCTGGAA
2348 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TTTCTGGTTGTGCCGAACGATAAGAAGGCTTATCCC
2420 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TGAAATATTGGCGCGCAGACGGACTCGGCCGCCCACC
2493 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC AATCTCCGCTACGTTTCATATGAGCGCAGATTGGG
2564 CTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC CGGGCATTGCGCTGGTCGATTTCATTGAGCTGCTGAAG
2638 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC ACAGAGCCAGGGCCGCGCCCAGAATTATTCCGACTG
2710 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC CGGACAATGCACTGAGACCTCAATGCTGACGACGTCGA
2784 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC GATCAGAGAGCGATGCTTATGCCGCCGGGGATGCTT
2856 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC ATTACCGCGCCGTTCGTACTATCCAGTTTCAAAATTGG
2930 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TACGGGGATTCGGACGTGGAGGCCGTGGATCCTTCCTT
3004 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC ACATTGATAAACGTTTCGGTGACCTTCTGGTGTTT
3075 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC ACAGTGGCCAGATTCGAGTTGTCCCTCTTCGCAAGGCA
3149 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC ACCCGGCGCGGGCGCGAGCTCGCGGTTTTTGGAGAGGT
3223 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC ACATCGCTGTCGGCGCTGCACACCGTGGGCGATCAGAT
3297 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC GCAAAAAGAATTTCGGAACAGGAACGGCTAATCGGATT
3371 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC GTTAAGAGCAAGGCGAAGCGGGGCAGTAACCCGCGCG
3444 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC GAAGCGAGCCTGGCGGTCACCGCGCGGCTCGATCAGT
3517 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC AATCGCGCTGAGCTGCCGCCAGTTGTGTCGTTCACTAC
3591 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC GTTTTGTTGGCTGACTTCATTGTGATGGGACATGA
3662 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TCCTTGCGGCGCGGATTGTTACTGTAAGGAGCACACC
3735 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC AGTGGCACCAAGACAGTGAGAAACGTCGGTACGGGACCG
3810 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC CTTTCTGAACACGAACCAAGTGCTCACTTCAACCA
3881 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC ATCAATAGGTATTCCTGAAGGGGTGTTCCATCGAAA
3953 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TCCCCACTGCAACCCTGCCACACTTGCACGACTTGTAAT
4028 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TCCGGCCCCGAAGGCCATCTCGCTGGCTTGTTGGACGG
4102 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC ATGATCACTCTGGCGGGCGCAATGAGCACAGCAGAGTT
4176 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TATCTTTGATGTACCGTTCGAGGCCCGCGCGAGTAAT
4249 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC CATCCCCAACTGCGATTGTAGAGAATTGATCCGCTTT
4322 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC AAAAAGCTGGCGGTAATTCGGGTACTGAACGTCCGGC
4395 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TTTTTCACTTGCACGGCCAGAACGTAACTCGTTCCGG
4468 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TTTTTCACTTGCACGGCCAGAACGTAACTCGTTCCGG
4541 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC CTGACACTGATTACTCATCGTTCCGTTTTGAAGCGCC
4614 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC AAATAGCGCGAGGCTTCAAGTTGGTTGCGGAAGCCAT
4687 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TATGCGCGAGCAATGATGTACGCGCTACCCTTGAT
4758 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC AGATAACTCCCCTCGGTTTAGGACGAGTGAGACCGTGA
4832 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TTTGTTTATCCAAACACCTTTCTTCGCTGCCCCAAC
4904 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC AAGAATGCGGCTTCAGCGGTGAGCGAAACGGTCCTC
4976 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAA GAACACATTCGGTTTCATGGCAGTGTTCCTAAGT
5046 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC GCAATTGAACTCAAACTTACTATTGCTGCGTGCCGTGT
5120 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TCCAACTGGCGATCATATTACTGGAAAATCTTCAATGA
5194 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TACTGGTGCAGTCCGGCGCCATCAGCGACAACACG
5265 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC ATCAAATTCCGGTGTGGGCATTTTGCGGACGTACTGGA
5339 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC GGTGCGCGCTTGGCGCCCACTGTTCCGCGTCCGGCGA
5412 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC TCGGATTTTGGGGTGAACTCTGCGAACGTAAACGCCGGCATCCTGGTTGTGATTCTTGGCGT
5510 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC AAAAACCAGCGTGCCGATGGCGGGTTCCGCCAGCT
5581 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC CTAAAACTAGCGAACATGAATCGGAACGAACTGGCTGA
5655 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC ATGAACCGGTTCAAGGTCTTGTCGTGATTGACGACGA
5728 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC ACGAAATCGCCGGCCTGATCGGTGAGTTCGAGCGTGGGA
5803 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC ACATTACTAATGGAGCGTGTTGAGACATAACAAGAAGAC
5878 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC CGTTTGCCGAAAGATATGCGGCTGACAAAATACATGGCG
5953 GTGTGAATTCCGATGATGCCGAAAGGCGTTGAGCAC -

PFAM Info

PFAM Domain Meaning GOTerms

Scaffold Families

F236457 , F366263 , F382350 , F392548 , F423237 , F427339 , F429319 , F431467 , F452782 , F472369 , F473158 , F473228 , F478036 , F479724 , F482647 , F484664 , F494524