F433599

General Info

Members Datasets Scaffolds Average Seq Length
396 241 306 305

Family's Representative Sequence

Representative Sequence 3300046492|Ga0495585_0018378|Ga0495585_0018378_2813_3811
Length 332
Sequence MQSEKFAEFLGVFTDVAREGSFSGAGRRRGRTPSSIGRQIDALEQHLETPLFLRSTRLLTLTDAGEALLMRARQILNSLEDVQQELASMKGAVTGTLRVACFPTFGKRYVLPVMAELTRIYPNLSMELDLTERLTDPVAERLDLVIRIGDMVDSTLIGSRIATQTRLLCASPVYISTAGMPKEFSDLHQHQLIDKLHGADLLCWADVLGQPTRSIRDIPIFACDDFEAMRLAALEGMGIAYLPDWVVGPDVKSGKLQQLFPQWSENPRACSGIHALRALRKPPARVTVLLDALRRHIGTPPIWSPDTSHDVSATRNHIVKTIFPTLSPFSMR

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2513237102 Bradyrhizobium japonicum USDA 135 Isolate Nodule
3 2513237103 Rhizobium leguminosarum bv. viciae VF39 Isolate Nodule
4 2516653077 Rhizobium acaciae WSM1481 Isolate Nodule
5 2554235003 Agrobacterium tumefaciens WRT31 Isolate Rhizosphere
6 2582581308 Rhizobium sp. OK494 Isolate Rhizosphere
7 2585427527 Rhizobium lusitanum YR374 Isolate Rhizosphere
8 2585427530 Rhizobium tropici YR635 Isolate Rhizosphere
9 2585427531 Agrobacterium rhizogenes YR530 Isolate Rhizosphere
10 2585427591 Rahnella aquatilis OV744 Isolate Rhizosphere
11 2585427592 Rahnella aquatilis OV588 Isolate Rhizosphere
12 2599185236 Rhizobium sp. NFR07 Isolate Rhizoplane
13 2609459761 Enterobacter sp. NFR05 Isolate Rhizoplane
14 2615840626 Rhizobium lusitanum P1-7 Isolate Nodule
15 2643221610 Ensifer sp. Root74 Isolate Unclassified
16 2643221675 Ensifer sp. Root1298 Isolate Unclassified
17 2643221680 Ensifer sp. Root1312 Isolate Unclassified
18 2643221693 Rhizobium sp. Root491 Isolate Unclassified
19 2643221726 Ensifer sp. Root954 Isolate Unclassified
20 2738541297 Duganella sp. GV083 Isolate Unclassified
21 2738541357 Duganella sp. GV053 Isolate Unclassified
22 2738543003 Duganella sp. GV066 Isolate Unclassified
23 2738543026 Duganella sp. GV089 Isolate Unclassified
24 2738543029 Duganella sp. GV039 Isolate Unclassified
25 2738543031 Pleomorphomonas sp. CF100 Isolate Unclassified
26 2818991438 Novosphingobium barchaimii 1192 Isolate Unclassified
27 2818991439 Agrobacterium tumefaciens 1187 Isolate Unclassified
28 2818991449 Herbaspirillum huttiense 1147 Isolate Unclassified
29 2818991453 Rhizobium lusitanum 1158 Isolate Unclassified
30 2818991461 Neorhizobium alkalisoli 1225 Isolate Unclassified
31 2821131069 Duganella sp. 1224 Isolate Unclassified
32 2824617872 Bradyrhizobium sp. HAMBI 2133 Isolate Unclassified
33 2824626560 Bradyrhizobium sp. HAMBI 2149 Isolate Unclassified
34 2824635225 Bradyrhizobium sp. HAMBI 2136 Isolate Unclassified
35 2824644064 Bradyrhizobium sp. HAMBI 2137 Isolate Unclassified
36 2824714736 Bradyrhizobium sp. HAMBI 2151 Isolate Unclassified
37 2824723954 Bradyrhizobium sp. HAMBI 2152 Isolate Unclassified
38 2841846520 Agrobacterium radiobacter SEMIA 440 Isolate Nodule
39 2842124991 Agrobacterium radiobacter SEMIA 434 Isolate Nodule
40 2842217011 Rhizobium leguminosarum SEMIA 475 Isolate Nodule
41 2849076700 Bradyrhizobium symbiodeficiens 85S1MB Isolate Nodule
42 2851153111 Caulobacter radicis 736 Isolate Unclassified
43 2856320880 Mesorhizobium sp. M8A.F.Ca.ET.165.01.1.1 Isolate Nodule
44 2857553236 Duganella sp. R-74557 Isolate Unclassified
45 2857564685 Duganella sp. R-74599 Isolate Unclassified
46 2869278585 Mesorhizobium sp. M8A.F.Ca.ET.198.01.1.1 Isolate Nodule
47 2874139085 Mesorhizobium sp. M8A.F.Ca.ET.207.01.1.1 Isolate Nodule
48 2878738818 Mesorhizobium sp. M8A.F.Ca.ET.218.01.1.1 Isolate Nodule
49 2881364244 Bradyrhizobium sp. RP6 Isolate Unclassified
50 2884960567 Caulobacter sp. 602-1 Isolate Rhizosphere
51 2888366609 Serratia sp. NGAS9 Isolate Rhizosphere
52 2888388044 Bradyrhizobium cosmicum 58S1 Isolate Unclassified
53 2904504865 Serratia marcescens 1822 Isolate Unclassified
54 2908669403 Pantoea coffeiphila 1480 Isolate Rhizosphere
55 2909399089 Nguyenibacter vanlangensis LMG 31431 Isolate Unclassified
56 2919046199 Herbaspirillum frisingense 596 Isolate Unclassified
57 2919100787 Rhizobium sp. 1399 Isolate Rhizosphere
58 2919108558 Klebsiella sp. 1400 Isolate Rhizosphere
59 2919114240 Agrobacterium tumefaciens 1457 Isolate Rhizosphere
60 2919476304 Duganella sp. 3397 Isolate Unclassified
61 2924718760 Mesorhizobium sp. M8A.F.Ca.ET.023.01.1.1 Isolate Nodule
62 2924776078 Mesorhizobium sp. M8A.F.Ca.ET.213.01.1.1 Isolate Nodule
63 2929138655 Agrobacterium sp. R-72433 Hybrid assembly Isolate Unclassified
64 2937972304 Mesorhizobium sp. M8A.F.Ca.ET.173.01.1.1 Isolate Nodule
65 2939573065 Citrobacter sp. 506 Isolate Rhizosphere
66 2941471342 Luteibacter sp. 621 Isolate Unclassified
67 2945874760 Phytobacter diazotrophicus UAEU22 Isolate Rhizosphere
68 2958034702 Mesorhizobium sp. M8A.F.Ca.ET.202.01.1.1 Isolate Nodule
69 2958041894 Mesorhizobium sp. M00.F.Ca.ET.149.01.1.1 Isolate Nodule
70 2958144490 Mesorhizobium sp. M8A.F.Ca.ET.021.01.1.1 Isolate Nodule
71 2968016561 Mesorhizobium sp. M8A.F.Ca.ET.182.01.1.1 Isolate Nodule
72 2970469710 Mesorhizobium sp. M8A.F.Ca.ET.181.01.1.1 Isolate Nodule
73 2970593180 Mesorhizobium sp. M8A.F.Ca.ET.197.01.1.1 Isolate Nodule
74 2979089926 Agrobacterium sp. SORGH_AS 745 Isolate Unclassified
75 2979095461 Agrobacterium tumefaciens SORGH_AS 749 Isolate Unclassified
76 2984559226 Klebsiella variicola SORGH_AS834 Isolate Aerial Root
77 2984595703 Klebsiella variicola SORGH_AS1070 Isolate Aerial Root
78 2996348954 Mesorhizobium sp. M8A.F.Ca.ET.167.01.1.1 Isolate Nodule
79 3004275668 Mesorhizobium sp. M8A.F.Ca.ET.208.01.1.1 Isolate Nodule
80 3004289098 Mesorhizobium sp. M8A.F.Ca.ET.023.02.2.1 Isolate Nodule
81 3005416602 Rhizobium sp. P40RR-XXII Isolate Rhizosphere
82 3005445848 Rhizobium sp. WYJ-E13 Isolate Unclassified
83 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
84 3300002739 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA Metagenome Endosphere
85 3300002771 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB Metagenome Endosphere
86 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
87 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
88 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
89 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
90 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
91 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
92 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
93 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
94 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
95 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
96 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
97 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
98 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
99 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
100 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
101 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
102 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
103 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
104 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
105 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
106 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
107 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
108 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
109 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
110 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
111 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
112 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
113 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
114 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
115 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
116 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
117 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
118 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
119 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
120 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
121 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
122 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
123 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
124 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
125 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
126 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
127 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
128 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
129 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
130 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
131 3300025207 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
132 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
133 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
134 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
135 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
136 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
137 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
138 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
139 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
140 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
141 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
142 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
143 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
144 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
145 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
146 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
147 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
148 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
149 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
150 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
151 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
152 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
153 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
154 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
155 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
156 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
157 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
158 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
159 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
160 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
161 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
162 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
163 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
164 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
165 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
166 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
167 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
168 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
169 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
170 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
171 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
172 3300041501 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_7 MetaG Metagenome Unclassified
173 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
174 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
175 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
176 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
177 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
178 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
179 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
180 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
181 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
182 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
183 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
184 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
185 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
186 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
187 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
188 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
189 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
190 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
191 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
192 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
193 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
194 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
195 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
196 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
197 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
198 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
199 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
200 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
201 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
202 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
203 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
204 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
205 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
206 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
207 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
208 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
209 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
210 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
211 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
212 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
213 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
214 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
215 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
216 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
217 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
218 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
219 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
220 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
221 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
222 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
223 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
224 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
225 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
226 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
227 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
228 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
229 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
230 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
231 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
232 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
233 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
234 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
235 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere
236 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
237 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
238 639633055 Rhizobium leguminosarum bv. viciae 3841 Isolate Unclassified
239 8005645114 Rhizobium tropici IGFRI Rhizo-19 Isolate Rhizosphere
240 8005682033 Rhizobium dioscoreae S-93 Isolate Unclassified
241 8057874678 Rhizobium acaciae 1AS12 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 77.78
Metatranscriptomes 0
Isolates 22.22

Biome Distribution

Category Percentage (%)
Aerial Root 0.51
Bulb 0
Endosphere 23.74
Nodule 6.82
Rhizoplane 2.53
Rhizosphere 33.84
Stem 0
Stem Tuber 0
Unclassified 32.58

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_3622374 2162886007 Bacteria 1903
2 JGI25162J39368_1000092 3300002737 Bacteria 100905
3 JGI25162J39368_1004253 3300002737 Bacteria 3450
4 JGI25158J39367_1000002 3300002739 Bacteria 73701
5 JGI25163J39215_1000365 3300002771 Bacteria 14614
6 JGI25164J39214_1000071 3300002772 Bacteria 100905
7 JGI25152J39213_1000301 3300002773 Bacteria 31895
8 JGI25152J39213_1002373 3300002773 Bacteria 7226
9 JGI25159J45721_1000133 3300002987 Bacteria 35035
10 JGI25159J45721_1001013 3300002987 Bacteria 12114
11 JGI25153J46596_10000142 3300003215 Bacteria 73162
12 JGI25153J46596_10000437 3300003215 Bacteria 26782
13 JGI25153J46596_10001087 3300003215 Bacteria 16573
14 JGI25153J46596_10004772 3300003215 Bacteria 7226
15 JGI25153J46596_10015340 3300003215 Bacteria 3126
16 rootH2_10080164 3300003320 Bacteria 2340
17 rootL2_10257257 3300003322 Bacteria 1469
18 rootH1_10043892 3300003323 Bacteria 37623
19 rootH1_10083550 3300003323 Bacteria 8312
20 rootH1_10167705 3300003323 Bacteria 2374
21 JGI25160J50197_1000300 3300003354 Bacteria 34955
22 JGI25160J50197_1001144 3300003354 Bacteria 13575
23 JGI25161J50226_1000026 3300003374 Bacteria 146134
24 JGI25161J50226_1000674 3300003374 Bacteria 13575
25 Ga0055538_1000064 3300003751 Bacteria 100905
26 Ga0055539_1000098 3300003752 Bacteria 100905
27 Ga0055533_1000108 3300003756 Bacteria 100905
28 Ga0055525_1000141 3300003759 Bacteria 100905
29 Ga0055542_1000025 3300003762 Bacteria 263538
30 Ga0055529_1000014 3300003763 Bacteria 367283
31 Ga0055526_1000385 3300003771 Bacteria 35743
32 Ga0055524_1003377 3300003775 Bacteria 7770
33 Ga0055528_1000018 3300003790 Bacteria 155302
34 Ga0055528_1007194 3300003790 Bacteria 4950
35 Ga0055540_1001255 3300003792 Bacteria 15521
36 Ga0055541_1000065 3300003841 Bacteria 100905
37 Ga0055543_1000085 3300004625 Bacteria 81274
38 Ga0055543_1000821 3300004625 Bacteria 15240
39 Ga0055543_1002266 3300004625 Bacteria 6508
40 Ga0065165_1000348 3300005262 Bacteria 75762
41 Ga0065165_1000777 3300005262 Bacteria 42783
42 Ga0065165_1002524 3300005262 Bacteria 15240
43 Ga0065704_10000614 3300005289 Bacteria 27753
44 Ga0065704_10077939 3300005289 Bacteria 4576
45 Ga0065704_10097553 3300005289 Bacteria 2389
46 Ga0070661_100076066 3300005344 Bacteria 2474
47 Ga0070665_100006450 3300005548 Bacteria 11940
48 Ga0070665_100026155 3300005548 Bacteria 5876
49 Ga0070665_100061608 3300005548 Bacteria 3761
50 Ga0070665_100162930 3300005548 Bacteria 2232
51 Ga0068852_100035840 3300005616 Bacteria 4144
52 Ga0075368_10000435 3300006042 Bacteria 12330
53 Ga0075367_10004391 3300006178 Bacteria 6881
54 Ga0075367_10093238 3300006178 Bacteria 1834
55 Ga0075369_10088465 3300006186 Bacteria 1380
56 Ga0075366_10005478 3300006195 Bacteria 6878
57 Ga0075370_10004689 3300006353 Bacteria 6671
58 Ga0079104_1000240 3300006946 Bacteria 72956
59 Ga0105251_10028327 3300009011 Bacteria 2832
60 Ga0105244_10001695 3300009036 Bacteria 17401
61 Ga0105244_10001819 3300009036 Bacteria 16659
62 Ga0105244_10006903 3300009036 Bacteria 7281
63 Ga0105250_10000582 3300009092 Bacteria 24038
64 Ga0105250_10002350 3300009092 Bacteria 9556
65 Ga0105250_10023390 3300009092 Bacteria 2488
66 Ga0105240_10000819 3300009093 Bacteria 56527
67 Ga0105240_10002173 3300009093 Bacteria 31981
68 Ga0105240_10021177 3300009093 Bacteria 8655
69 Ga0105240_10637931 3300009093 Bacteria 1169
70 Ga0105243_10038821 3300009148 Bacteria 3709
71 Ga0105237_10006123 3300009545 Bacteria 13448
72 Ga0105239_10257363 3300010375 Bacteria 1961
73 Ga0157373_10004860 3300013100 Bacteria 10114
74 Ga0157370_10003466 3300013104 Bacteria 18505
75 Ga0157370_10085679 3300013104 Bacteria 2960
76 Ga0157369_10041476 3300013105 Bacteria 5024
77 Ga0182008_10002933 3300014497 Bacteria 10514
78 Ga0213872_10019598 3300021361 Bacteria 3115
79 Ga0213876_10000176 3300021384 Bacteria 66221
80 Ga0209760_100189 3300025207 Bacteria 30616
81 Ga0209436_100016 3300025208 Bacteria 117496
82 Ga0209784_100001 3300025224 Bacteria 3600592
83 Ga0209566_100001 3300025225 Bacteria 3600765
84 Ga0209674_100002 3300025226 Bacteria 3600592
85 Ga0209563_100002 3300025230 Bacteria 2045675
86 Ga0207427_100020 3300025231 Bacteria 507515
87 Ga0209437_100001 3300025233 Bacteria 2045675
88 Ga0209437_100261 3300025233 Bacteria 82127
89 Ga0207425_1005232 3300025245 Bacteria 3729
90 Ga0209677_100002 3300025253 Bacteria 2045675
91 Ga0209677_100560 3300025253 Bacteria 20588
92 Ga0209677_110714 3300025253 Bacteria 1497
93 Ga0209148_1000011 3300025254 Bacteria 1196503
94 Ga0209129_1000673 3300025258 Bacteria 22557
95 Ga0209129_1001821 3300025258 Bacteria 11301
96 Ga0209233_1000162 3300025261 Bacteria 156508
97 Ga0209233_1000788 3300025261 Bacteria 14264
98 Ga0209455_1000006 3300025272 Bacteria 1196503
99 Ga0209673_1000055 3300025273 Bacteria 272768
100 Ga0209673_1000573 3300025273 Bacteria 58647
101 Ga0209673_1003624 3300025273 Bacteria 8936
102 Ga0209130_1000049 3300025284 Bacteria 226841
103 Ga0209130_1001034 3300025284 Bacteria 21318
104 Ga0209025_1007034 3300025294 Bacteria 8523
105 Ga0209564_1000354 3300025295 Bacteria 85718
106 Ga0209564_1030405 3300025295 Bacteria 1674
107 Ga0209758_1000138 3300025297 Bacteria 175187
108 Ga0209758_1000140 3300025297 Bacteria 174267
109 Ga0209758_1000396 3300025297 Bacteria 75453
110 Ga0209758_1000592 3300025297 Bacteria 56476
111 Ga0209758_1051173 3300025297 Bacteria 1440
112 Ga0209256_1000147 3300025299 Bacteria 149002
113 Ga0209256_1001769 3300025299 Bacteria 20511
114 Ga0209256_1021062 3300025299 Bacteria 2015
115 Ga0207426_1000140 3300025302 Bacteria 195664
116 Ga0207426_1000462 3300025302 Bacteria 63167
117 Ga0209051_1001263 3300025303 Bacteria 22606
118 Ga0209257_1000522 3300025304 Bacteria 66723
119 Ga0207696_1000030 3300025711 Bacteria 395961
120 Ga0207696_1002265 3300025711 Bacteria 9564
121 Ga0207655_1000737 3300025728 Bacteria 36927
122 Ga0207655_1001960 3300025728 Bacteria 17583
123 Ga0207655_1020410 3300025728 Bacteria 3406
124 Ga0207713_1034527 3300025735 Bacteria 2195
125 Ga0207647_10000020 3300025904 Bacteria 123888
126 Ga0207695_10000727 3300025913 Bacteria 63968
127 Ga0207695_10001938 3300025913 Bacteria 32150
128 Ga0207695_10002671 3300025913 Bacteria 26049
129 Ga0207671_10000387 3300025914 Bacteria 62082
130 Ga0207649_10054293 3300025920 Bacteria 2493
131 Ga0207681_10034221 3300025923 Bacteria 3339
132 Ga0207640_10084750 3300025981 Bacteria 2177
133 Ga0209281_1000313 3300027111 Bacteria 86484
134 Ga0209371_1000735 3300027312 Bacteria 27499
135 Ga0209813_10006082 3300027866 Bacteria 2965
136 Ga0268266_10011693 3300028379 Bacteria 7616
137 Ga0268266_10109598 3300028379 Bacteria 2445
138 Ga0268266_10131245 3300028379 Bacteria 2241
139 Ga0268256_1000625 3300030500 Bacteria 27486
140 Ga0316181_1239520 3300030744 Bacteria 2024
141 Ga0307412_10013644 3300031911 Bacteria 4772
142 Ga0436365_0571044 3300039437 Bacteria 107748
143 Ga0436361_0179805 3300039447 Bacteria 1665
144 Ga0436361_0221654 3300039447 Bacteria 10509
145 Ga0451845_0851969 3300041501 Bacteria 1758
146 Ga0439432_003574 3300042006 Bacteria 5753
147 Ga0495617_000021 3300046452 Bacteria 215885
148 Ga0495627_000011 3300046453 Bacteria 354522
149 Ga0495627_009147 3300046453 Bacteria 3657
150 Ga0495638_0078413 3300046460 Bacteria 2010
151 Ga0495653_0000010 3300046463 Bacteria 274131
152 Ga0495650_0005507 3300046471 Bacteria 8187
153 Ga0495650_0006241 3300046471 Bacteria 7471
154 Ga0495650_0015609 3300046471 Bacteria 3887
155 Ga0495605_0000002 3300046474 Bacteria 522417
156 Ga0495585_0000583 3300046492 Bacteria 34295
157 Ga0495585_0018378 3300046492 Bacteria 4032
158 Ga0495594_0003457 3300046499 Bacteria 8151
159 Ga0495583_0000002 3300046506 Bacteria 782521
160 Ga0495583_0000012 3300046506 Bacteria 324839
161 Ga0495606_0000103 3300046507 Bacteria 145893
162 Ga0495606_0171109 3300046507 Bacteria 1260
163 Ga0495606_0241573 3300046507 Bacteria 1007
164 Ga0495610_0000010 3300046512 Bacteria 538821
165 Ga0495610_0003162 3300046512 Bacteria 13055
166 Ga0495610_0026661 3300046512 Bacteria 3082
167 Ga0495620_0000026 3300046515 Bacteria 124427
168 Ga0495620_0082063 3300046515 Unclassified 1303
169 Ga0495631_0012984 3300046518 Bacteria 4055
170 Ga0495643_0029821 3300046522 Bacteria 3050
171 Ga0495643_0087045 3300046522 Bacteria 1617
172 Ga0495648_0001919 3300046524 Bacteria 19808
173 Ga0495648_0002635 3300046524 Bacteria 16301
174 Ga0495648_0008959 3300046524 Bacteria 7817
175 Ga0495648_0012118 3300046524 Bacteria 6455
176 Ga0495648_0014203 3300046524 Bacteria 5841
177 Ga0495654_0000617 3300046530 Bacteria 28316
178 Ga0495654_0001972 3300046530 Bacteria 13527
179 Ga0495609_0000008 3300046538 Bacteria 383025
180 Ga0495609_0000112 3300046538 Bacteria 94699
181 Ga0495597_0002842 3300046542 Bacteria 10597
182 Ga0495633_0000216 3300046558 Bacteria 72025
183 Ga0495633_0000277 3300046558 Bacteria 59502
184 Ga0495633_0011613 3300046558 Bacteria 4737
185 Ga0495668_0000225 3300046616 Bacteria 81512
186 Ga0495611_0012485 3300046648 Bacteria 3611
187 Ga0495661_0000096 3300046665 Bacteria 109096
188 Ga0495661_0050253 3300046665 Bacteria 2525
189 Ga0495671_0000002 3300046692 Bacteria 1136189
190 Ga0495671_0066244 3300046692 Bacteria 1777
191 Ga0495649_0017158 3300046694 Bacteria 4089
192 Ga0495589_0000492 3300046794 Bacteria 28250
193 Ga0495660_0000014 3300046810 Bacteria 337328
194 Ga0495660_0001316 3300046810 Bacteria 17175
195 Ga0495660_0005892 3300046810 Bacteria 7303
196 Ga0495660_0022716 3300046810 Bacteria 3580
197 Ga0495683_0000169 3300047323 Bacteria 63606
198 Ga0495679_000200 3300047446 Bacteria 52539
199 Ga0495679_031398 3300047446 Bacteria 1713
200 Ga0495673_0000026 3300047469 Bacteria 476378
201 Ga0495673_0000060 3300047469 Bacteria 231642
202 Ga0495681_0019512 3300047470 Bacteria 3700
203 Ga0495686_0099785 3300047472 Bacteria 1752
204 Ga0496100_0007043 3300048903 Bacteria 6170
205 Ga0496102_0000617 3300048905 Bacteria 36855
206 Ga0496103_0020174 3300048906 Bacteria 4002
207 Ga0496104_0035250 3300048907 Bacteria 4672
208 Ga0496106_0000184 3300048909 Bacteria 44501
209 Ga0496106_0213582 3300048909 Bacteria 1537
210 Ga0496112_0516067 3300048915 Bacteria 1130
211 Ga0496113_0287186 3300048916 Bacteria 1316
212 Ga0496116_0000288 3300048919 Bacteria 85510
213 Ga0496116_0015843 3300048919 Bacteria 5934
214 Ga0496116_0022805 3300048919 Bacteria 4678
215 Ga0496116_0034289 3300048919 Bacteria 3584
216 Ga0496116_0088319 3300048919 Bacteria 1894
217 Ga0496116_0103740 3300048919 Bacteria 1691
218 Ga0496116_0146225 3300048919 Bacteria 1321
219 Ga0496117_0000277 3300048920 Bacteria 95538
220 Ga0496117_0001758 3300048920 Bacteria 29816
221 Ga0496117_0004009 3300048920 Bacteria 16613
222 Ga0496117_0008794 3300048920 Bacteria 9529
223 Ga0496117_0011554 3300048920 Bacteria 7900
224 Ga0496117_0020340 3300048920 Bacteria 5412
225 Ga0496118_0000307 3300048921 Bacteria 85093
226 Ga0496118_0000353 3300048921 Bacteria 77839
227 Ga0496118_0004387 3300048921 Bacteria 16773
228 Ga0496118_0005260 3300048921 Bacteria 14781
229 Ga0496118_0012914 3300048921 Bacteria 7954
230 Ga0496118_0025387 3300048921 Bacteria 5084
231 Ga0496118_0083132 3300048921 Bacteria 2240
232 Ga0496119_0000443 3300048922 Bacteria 56795
233 Ga0496119_0001038 3300048922 Bacteria 35522
234 Ga0496119_0002500 3300048922 Bacteria 20096
235 Ga0496119_0011691 3300048922 Bacteria 7228
236 Ga0496119_0011981 3300048922 Bacteria 7100
237 Ga0496119_0046429 3300048922 Bacteria 2713
238 Ga0496119_0069272 3300048922 Bacteria 2073
239 Ga0496120_0000629 3300048923 Bacteria 52595
240 Ga0496120_0000775 3300048923 Bacteria 46150
241 Ga0496120_0000818 3300048923 Bacteria 44506
242 Ga0496120_0002184 3300048923 Bacteria 20708
243 Ga0496120_0010412 3300048923 Bacteria 6492
244 Ga0496120_0042756 3300048923 Bacteria 2644
245 Ga0496121_0000003 3300048924 Bacteria 1191431
246 Ga0496121_0000108 3300048924 Bacteria 188757
247 Ga0496121_0000536 3300048924 Bacteria 72166
248 Ga0496121_0011468 3300048924 Bacteria 9838
249 Ga0496121_0029586 3300048924 Bacteria 5060
250 Ga0496121_0030836 3300048924 Bacteria 4916
251 Ga0496122_0000193 3300048925 Bacteria 139724
252 Ga0496122_0000987 3300048925 Bacteria 50805
253 Ga0496122_0015879 3300048925 Bacteria 7169
254 Ga0496122_0026462 3300048925 Bacteria 4999
255 Ga0496122_0033169 3300048925 Bacteria 4253
256 Ga0496122_0034489 3300048925 Bacteria 4140
257 Ga0496122_0052636 3300048925 Bacteria 3079
258 Ga0496122_0059862 3300048925 Bacteria 2809
259 Ga0496122_0072798 3300048925 Bacteria 2441
260 Ga0496123_0000152 3300048926 Bacteria 140376
261 Ga0496123_0000154 3300048926 Bacteria 139724
262 Ga0496123_0001048 3300048926 Bacteria 41782
263 Ga0496123_0003865 3300048926 Bacteria 16295
264 Ga0496123_0009056 3300048926 Bacteria 9018
265 Ga0496123_0013023 3300048926 Bacteria 7023
266 Ga0496123_0014804 3300048926 Bacteria 6439
267 Ga0496123_0017682 3300048926 Bacteria 5718
268 Ga0496123_0028984 3300048926 Bacteria 4086
269 Ga0496123_0037243 3300048926 Bacteria 3437
270 Ga0496123_0064429 3300048926 Bacteria 2335
271 Ga0496124_0002143 3300048927 Bacteria 26507
272 Ga0496124_0007551 3300048927 Bacteria 11533
273 Ga0496124_0010695 3300048927 Bacteria 9256
274 Ga0496124_0011056 3300048927 Bacteria 9060
275 Ga0496124_0019451 3300048927 Bacteria 6318
276 Ga0496124_0022829 3300048927 Bacteria 5728
277 Ga0496124_0156040 3300048927 Bacteria 1785
278 Ga0496125_0000033 3300048928 Bacteria 351850
279 Ga0496125_0000155 3300048928 Bacteria 151541
280 Ga0496125_0000537 3300048928 Bacteria 65346
281 Ga0496125_0000577 3300048928 Bacteria 62789
282 Ga0496125_0009652 3300048928 Bacteria 9866
283 Ga0496125_0011252 3300048928 Bacteria 8969
284 Ga0496125_0016363 3300048928 Bacteria 7126
285 Ga0496125_0204797 3300048928 Bacteria 1287
286 Ga0496126_0001377 3300048929 Bacteria 38426
287 Ga0496126_0002712 3300048929 Bacteria 23399
288 Ga0496126_0012664 3300048929 Bacteria 8630
289 Ga0496126_0033692 3300048929 Bacteria 4817
290 Ga0495678_000010 3300049459 Bacteria 357896
291 Ga0495678_000242 3300049459 Bacteria 61395
292 Ga0501033_0004037 3300049570 Bacteria 11859
293 Ga0501043_0045487 3300049579 Bacteria 3453
294 Ga0501035_0003672 3300049822 Bacteria 14626
295 nmdc:mga00v17_96228_c1 3300050491 Bacteria 1865
296 nmdc:mga0k408_3892_c2 3300050493 Bacteria 7663
297 nmdc:mga06z11_2349_c1 3300050494 Bacteria 7207
298 nmdc:mga04h51_2529_c1 3300050495 Bacteria 4351
299 nmdc:mga07m45_1250_c1 3300050496 Bacteria 1602
300 nmdc:mga07m45_4086_c1 3300050496 Bacteria 7118
301 nmdc:mga0sz30_37940_c1 3300050516 Bacteria 2018
302 Ga0500556_0000096 3300053104 Bacteria 82203
303 Ga0500568_0057453 3300053139 Bacteria 1514
304 Ga0500586_000567 3300053145 Bacteria 7522
305 Ga0500622_0003204 3300053156 Bacteria 11136
306 Ga0500633_0000072 3300053160 Bacteria 15109

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300031911 Ga0307412_10013644 Ga0307412_100136446 244
2 3300048926 Ga0496123_0037243 Ga0496123_0037243_2626_3420 264
3 3300048919 Ga0496116_0034289 Ga0496116_0034289_2349_3155 268
4 3300048920 Ga0496117_0000277 Ga0496117_0000277_91028_91834 268
5 3300048921 Ga0496118_0004387 Ga0496118_0004387_1738_2544 268
6 3300048922 Ga0496119_0011981 Ga0496119_0011981_298_1104 268
7 3300048923 Ga0496120_0002184 Ga0496120_0002184_2784_3590 268
8 3300048925 Ga0496122_0000193 Ga0496122_0000193_317_1123 268
9 3300048926 Ga0496123_0000154 Ga0496123_0000154_317_1123 268
10 3300048927 Ga0496124_0011056 Ga0496124_0011056_5557_6363 268
11 3300048929 Ga0496126_0033692 Ga0496126_0033692_317_1123 268
12 3300050493 nmdc:mga0k408_3892_c2 nmdc:mga0k408_3892_c2_5777_6583 268
13 3300050494 nmdc:mga06z11_2349_c1 nmdc:mga06z11_2349_c1_253_1059 268
14 3300050495 nmdc:mga04h51_2529_c1 nmdc:mga04h51_2529_c1_439_1245 268
15 3300050496 nmdc:mga07m45_4086_c1 nmdc:mga07m45_4086_c1_5996_6802 268
16 3300048919 Ga0496116_0088319 Ga0496116_0088319_1023_1847 269
17 3300048923 Ga0496120_0042756 Ga0496120_0042756_1791_2615 269
18 iso_pu_bacteria 2824644064 2824646084 270
19 iso_pu_bacteria 2824723954 2824726569 270
20 3300009545 Ga0105237_10006123 Ga0105237_100061234 294
21 3300025914 Ga0207671_10000387 Ga0207671_1000038722 294
22 3300048925 Ga0496122_0026462 Ga0496122_0026462_1517_2455 294
23 3300048926 Ga0496123_0009056 Ga0496123_0009056_4353_5291 294
24 iso_pu_bacteria 2643221693 2644523487 296
25 iso_pu_bacteria 2818991461 2819683170 296
26 iso_pu_bacteria 2979089926 2979095179 296
27 iso_pu_bacteria 2979095461 2979097429 296
28 iso_pu_bacteria 2738543031 2739352189 297
29 3300009011 Ga0105251_10028327 Ga0105251_100283272 299
30 3300025735 Ga0207713_1034527 Ga0207713_10345272 299
31 3300046453 Ga0495627_009147 Ga0495627_009147_534_1433 299
32 3300046463 Ga0495653_0000010 Ga0495653_0000010_196270_197208 299
33 3300046471 Ga0495650_0015609 Ga0495650_0015609_1089_1988 299
34 3300046474 Ga0495605_0000002 Ga0495605_0000002_381345_382244 299
35 3300046499 Ga0495594_0003457 Ga0495594_0003457_2097_2996 299
36 3300046506 Ga0495583_0000012 Ga0495583_0000012_39895_40794 299
37 3300046507 Ga0495606_0000103 Ga0495606_0000103_135885_136823 299
38 3300046512 Ga0495610_0003162 Ga0495610_0003162_10582_11481 299
39 3300046515 Ga0495620_0000026 Ga0495620_0000026_40136_41035 299
40 3300046518 Ga0495631_0012984 Ga0495631_0012984_1305_2204 299
41 3300046524 Ga0495648_0002635 Ga0495648_0002635_2660_3559 299
42 3300046530 Ga0495654_0000617 Ga0495654_0000617_20365_21264 299
43 3300046538 Ga0495609_0000008 Ga0495609_0000008_342082_342981 299
44 3300046542 Ga0495597_0002842 Ga0495597_0002842_7247_8146 299
45 3300046558 Ga0495633_0000216 Ga0495633_0000216_20575_21474 299
46 3300046648 Ga0495611_0012485 Ga0495611_0012485_2513_3412 299
47 3300046665 Ga0495661_0000096 Ga0495661_0000096_37681_38580 299
48 3300046794 Ga0495589_0000492 Ga0495589_0000492_17141_18040 299
49 3300046810 Ga0495660_0005892 Ga0495660_0005892_1300_2199 299
50 3300047323 Ga0495683_0000169 Ga0495683_0000169_22571_23470 299
51 3300047446 Ga0495679_000200 Ga0495679_000200_13902_14801 299
52 3300047470 Ga0495681_0019512 Ga0495681_0019512_1834_2733 299
53 3300049459 Ga0495678_000242 Ga0495678_000242_20474_21373 299
54 iso_pu_bacteria 2909399089 2909399781 299
55 iso_pu_bacteria 2919100787 2919101566 299
56 iso_pu_bacteria 8057874678 8057875222 299
57 3300021361 Ga0213872_10019598 Ga0213872_100195983 300
58 3300039447 Ga0436361_0179805 Ga0436361_0179805_169_1080 300
59 3300048928 Ga0496125_0000577 Ga0496125_0000577_44142_45056 300
60 iso_pu_bacteria 2513237102 2513706346 300
61 iso_pu_bacteria 2513237103 2513708875 300
62 iso_pu_bacteria 2516653077 2517035859 300
63 iso_pu_bacteria 2554235003 2554249680 300
64 iso_pu_bacteria 2582581308 2585277814 300
65 iso_pu_bacteria 2585427527 2585533320 300
66 iso_pu_bacteria 2585427530 2585555747 300
67 iso_pu_bacteria 2585427531 2585563909 300
68 iso_pu_bacteria 2609459761 2609913197 300
69 iso_pu_bacteria 2615840626 2616313201 300
70 iso_pu_bacteria 2643221610 2644067892 300
71 iso_pu_bacteria 2643221675 2644417824 300
72 iso_pu_bacteria 2643221680 2644451252 300
73 iso_pu_bacteria 2643221693 2644520019 300
74 iso_pu_bacteria 2643221726 2644687358 300
75 iso_pu_bacteria 2818991438 2819551964 300
76 iso_pu_bacteria 2818991439 2819561827 300
77 iso_pu_bacteria 2818991453 2819641957 300
78 iso_pu_bacteria 2824617872 2824617931 300
79 iso_pu_bacteria 2824626560 2824626599 300
80 iso_pu_bacteria 2824635225 2824638616 300
81 iso_pu_bacteria 2824714736 2824716270 300
82 iso_pu_bacteria 2841846520 2841851322 300
83 iso_pu_bacteria 2842124991 2842129297 300
84 iso_pu_bacteria 2842217011 2842217077 300
85 iso_pu_bacteria 2849076700 2849079117 300
86 iso_pu_bacteria 2851153111 2851156435 300
87 iso_pu_bacteria 2856320880 2856325052 300
88 iso_pu_bacteria 2869278585 2869280926 300
89 iso_pu_bacteria 2874139085 2874141406 300
90 iso_pu_bacteria 2878738818 2878743136 300
91 iso_pu_bacteria 2881364244 2881368645 300
92 iso_pu_bacteria 2884960567 2884963300 300
93 iso_pu_bacteria 2884960567 2884964174 300
94 iso_pu_bacteria 2888388044 2888393608 300
95 iso_pu_bacteria 2919114240 2919119627 300
96 iso_pu_bacteria 2924718760 2924723644 300
97 iso_pu_bacteria 2924776078 2924777455 300
98 iso_pu_bacteria 2929138655 2929140489 300
99 iso_pu_bacteria 2945874760 2945879207 300
100 iso_pu_bacteria 2958041894 2958050511 300
101 iso_pu_bacteria 2958144490 2958147914 300
102 iso_pu_bacteria 3004289098 3004291107 300
103 iso_pu_bacteria 3005416602 3005419228 300
104 iso_pu_bacteria 3005445848 3005452549 300
105 iso_pu_bacteria 639633055 639648392 300
106 iso_pu_bacteria 8005645114 8005645556 300
107 iso_pu_bacteria 8005682033 8005687280 300
108 3300003762 Ga0055542_1000025 Ga0055542_100002519 302
109 3300003763 Ga0055529_1000014 Ga0055529_1000014234 302
110 3300009093 Ga0105240_10000819 Ga0105240_1000081922 302
111 3300025254 Ga0209148_1000011 Ga0209148_1000011238 302
112 3300025272 Ga0209455_1000006 Ga0209455_1000006956 302
113 3300025913 Ga0207695_10000727 Ga0207695_1000072739 302
114 iso_pu_bacteria 2857553236 2857556155 302
115 3300009092 Ga0105250_10023390 Ga0105250_100233902 303
116 3300025297 Ga0209758_1051173 Ga0209758_10511732 303
117 3300025923 Ga0207681_10034221 Ga0207681_100342214 303
118 3300046507 Ga0495606_0171109 Ga0495606_0171109_95_1012 303
119 3300046512 Ga0495610_0026661 Ga0495610_0026661_95_1012 303
120 3300046522 Ga0495643_0029821 Ga0495643_0029821_205_1122 303
121 3300046524 Ga0495648_0012118 Ga0495648_0012118_2432_3427 303
122 3300046694 Ga0495649_0017158 Ga0495649_0017158_2662_3579 303
123 3300048919 Ga0496116_0103740 Ga0496116_0103740_181_1098 303
124 3300048921 Ga0496118_0025387 Ga0496118_0025387_3324_4241 303
125 3300048924 Ga0496121_0029586 Ga0496121_0029586_1234_2151 303
126 3300048925 Ga0496122_0052636 Ga0496122_0052636_1181_2098 303
127 3300048926 Ga0496123_0013023 Ga0496123_0013023_2795_3712 303
128 3300048927 Ga0496124_0156040 Ga0496124_0156040_287_1204 303
129 3300048928 Ga0496125_0011252 Ga0496125_0011252_3771_4688 303
130 3300053139 Ga0500568_0057453 Ga0500568_0057453_95_1012 303
131 3300053156 Ga0500622_0003204 Ga0500622_0003204_5028_5945 303
132 iso_pu_bacteria 2599185236 2599723384 303
133 iso_pu_bacteria 2941471342 2941474537 303
134 iso_pu_bacteria 3005445848 3005448783 303
135 3300002739 JGI25158J39367_1000002 JGI25158J39367_10000023 304
136 3300002773 JGI25152J39213_1000301 JGI25152J39213_100030122 304
137 3300002987 JGI25159J45721_1000133 JGI25159J45721_100013313 304
138 3300002987 JGI25159J45721_1001013 JGI25159J45721_100101313 304
139 3300003215 JGI25153J46596_10000142 JGI25153J46596_100001428 304
140 3300003215 JGI25153J46596_10000437 JGI25153J46596_1000043724 304
141 3300003215 JGI25153J46596_10001087 JGI25153J46596_1000108715 304
142 3300003215 JGI25153J46596_10015340 JGI25153J46596_100153402 304
143 3300003320 rootH2_10080164 rootH2_100801641 304
144 3300003323 rootH1_10083550 rootH1_100835504 304
145 3300003354 JGI25160J50197_1000300 JGI25160J50197_100030029 304
146 3300003354 JGI25160J50197_1001144 JGI25160J50197_100114412 304
147 3300003374 JGI25161J50226_1000026 JGI25161J50226_100002630 304
148 3300003374 JGI25161J50226_1000674 JGI25161J50226_100067412 304
149 3300003771 Ga0055526_1000385 Ga0055526_100038533 304
150 3300003790 Ga0055528_1007194 Ga0055528_10071942 304
151 3300003792 Ga0055540_1001255 Ga0055540_100125513 304
152 3300004625 Ga0055543_1000085 Ga0055543_100008574 304
153 3300004625 Ga0055543_1000821 Ga0055543_10008219 304
154 3300004625 Ga0055543_1002266 Ga0055543_10022665 304
155 3300005262 Ga0065165_1000348 Ga0065165_100034845 304
156 3300005262 Ga0065165_1000777 Ga0065165_100077726 304
157 3300005262 Ga0065165_1002524 Ga0065165_10025249 304
158 3300005289 Ga0065704_10097553 Ga0065704_100975532 304
159 3300005344 Ga0070661_100076066 Ga0070661_1000760662 304
160 3300005548 Ga0070665_100006450 Ga0070665_10000645014 304
161 3300005548 Ga0070665_100026155 Ga0070665_1000261558 304
162 3300005548 Ga0070665_100061608 Ga0070665_1000616082 304
163 3300005548 Ga0070665_100162930 Ga0070665_1001629302 304
164 3300005616 Ga0068852_100035840 Ga0068852_1000358406 304
165 3300006042 Ga0075368_10000435 Ga0075368_100004357 304
166 3300006178 Ga0075367_10004391 Ga0075367_100043913 304
167 3300006178 Ga0075367_10093238 Ga0075367_100932383 304
168 3300006186 Ga0075369_10088465 Ga0075369_100884652 304
169 3300006195 Ga0075366_10005478 Ga0075366_100054783 304
170 3300006353 Ga0075370_10004689 Ga0075370_100046899 304
171 3300009036 Ga0105244_10001819 Ga0105244_1000181919 304
172 3300009093 Ga0105240_10002173 Ga0105240_1000217317 304
173 3300009093 Ga0105240_10637931 Ga0105240_106379311 304
174 3300009148 Ga0105243_10038821 Ga0105243_100388212 304
175 3300010375 Ga0105239_10257363 Ga0105239_102573633 304
176 3300013100 Ga0157373_10004860 Ga0157373_100048609 304
177 3300013104 Ga0157370_10003466 Ga0157370_1000346622 304
178 3300013105 Ga0157369_10041476 Ga0157369_100414761 304
179 3300021384 Ga0213876_10000176 Ga0213876_1000017655 304
180 3300025208 Ga0209436_100016 Ga0209436_10001627 304
181 3300025245 Ga0207425_1005232 Ga0207425_10052325 304
182 3300025253 Ga0209677_100560 Ga0209677_10056020 304
183 3300025253 Ga0209677_110714 Ga0209677_1107142 304
184 3300025258 Ga0209129_1001821 Ga0209129_10018217 304
185 3300025261 Ga0209233_1000162 Ga0209233_100016264 304
186 3300025273 Ga0209673_1000573 Ga0209673_10005733 304
187 3300025273 Ga0209673_1003624 Ga0209673_10036249 304
188 3300025284 Ga0209130_1000049 Ga0209130_1000049229 304
189 3300025284 Ga0209130_1001034 Ga0209130_100103415 304
190 3300025295 Ga0209564_1000354 Ga0209564_100035497 304
191 3300025297 Ga0209758_1000138 Ga0209758_100013897 304
192 3300025297 Ga0209758_1000140 Ga0209758_100014083 304
193 3300025297 Ga0209758_1000396 Ga0209758_100039636 304
194 3300025299 Ga0209256_1001769 Ga0209256_10017695 304
195 3300025299 Ga0209256_1021062 Ga0209256_10210622 304
196 3300025302 Ga0207426_1000140 Ga0207426_100014025 304
197 3300025302 Ga0207426_1000462 Ga0207426_100046261 304
198 3300025303 Ga0209051_1001263 Ga0209051_100126326 304
199 3300025304 Ga0209257_1000522 Ga0209257_100052262 304
200 3300025728 Ga0207655_1020410 Ga0207655_10204102 304
201 3300025913 Ga0207695_10001938 Ga0207695_1000193821 304
202 3300025920 Ga0207649_10054293 Ga0207649_100542932 304
203 3300025981 Ga0207640_10084750 Ga0207640_100847502 304
204 3300027866 Ga0209813_10006082 Ga0209813_100060823 304
205 3300028379 Ga0268266_10011693 Ga0268266_100116936 304
206 3300028379 Ga0268266_10109598 Ga0268266_101095983 304
207 3300028379 Ga0268266_10131245 Ga0268266_101312451 304
208 3300030744 Ga0316181_1239520 Ga0316181_12395202 304
209 3300039437 Ga0436365_0571044 Ga0436365_0571044_60879_61799 304
210 3300039447 Ga0436361_0221654 Ga0436361_0221654_2733_3677 304
211 3300041501 Ga0451845_0851969 Ga0451845_0851969_744_1658 304
212 3300046506 Ga0495583_0000002 Ga0495583_0000002_195408_196328 304
213 3300047472 Ga0495686_0099785 Ga0495686_0099785_387_1307 304
214 3300048903 Ga0496100_0007043 Ga0496100_0007043_4969_5883 304
215 3300048905 Ga0496102_0000617 Ga0496102_0000617_8584_9498 304
216 3300048906 Ga0496103_0020174 Ga0496103_0020174_160_1074 304
217 3300048907 Ga0496104_0035250 Ga0496104_0035250_1851_2765 304
218 3300048909 Ga0496106_0000184 Ga0496106_0000184_30455_31369 304
219 3300048909 Ga0496106_0213582 Ga0496106_0213582_315_1229 304
220 3300048915 Ga0496112_0516067 Ga0496112_0516067_128_1042 304
221 3300048916 Ga0496113_0287186 Ga0496113_0287186_261_1175 304
222 3300048919 Ga0496116_0015843 Ga0496116_0015843_4817_5731 304
223 3300048919 Ga0496116_0146225 Ga0496116_0146225_12_932 304
224 3300048920 Ga0496117_0001758 Ga0496117_0001758_16842_17756 304
225 3300048920 Ga0496117_0004009 Ga0496117_0004009_4390_5304 304
226 3300048920 Ga0496117_0020340 Ga0496117_0020340_1249_2178 304
227 3300048921 Ga0496118_0000353 Ga0496118_0000353_12809_13723 304
228 3300048921 Ga0496118_0005260 Ga0496118_0005260_11297_12211 304
229 3300048921 Ga0496118_0083132 Ga0496118_0083132_895_1809 304
230 3300048922 Ga0496119_0000443 Ga0496119_0000443_11280_12194 304
231 3300048922 Ga0496119_0002500 Ga0496119_0002500_15386_16300 304
232 3300048922 Ga0496119_0011691 Ga0496119_0011691_3774_4688 304
233 3300048923 Ga0496120_0000629 Ga0496120_0000629_15399_16313 304
234 3300048923 Ga0496120_0000775 Ga0496120_0000775_3597_4511 304
235 3300048923 Ga0496120_0000818 Ga0496120_0000818_24841_25755 304
236 3300048924 Ga0496121_0000003 Ga0496121_0000003_16190_17119 304
237 3300048924 Ga0496121_0000536 Ga0496121_0000536_64126_65040 304
238 3300048925 Ga0496122_0000193 Ga0496122_0000193_55173_56087 304
239 3300048925 Ga0496122_0000987 Ga0496122_0000987_46253_47173 304
240 3300048925 Ga0496122_0033169 Ga0496122_0033169_184_1098 304
241 3300048925 Ga0496122_0059862 Ga0496122_0059862_1430_2350 304
242 3300048925 Ga0496122_0072798 Ga0496122_0072798_1086_2000 304
243 3300048926 Ga0496123_0000152 Ga0496123_0000152_135795_136715 304
244 3300048926 Ga0496123_0000154 Ga0496123_0000154_55173_56087 304
245 3300048926 Ga0496123_0001048 Ga0496123_0001048_20695_21615 304
246 3300048926 Ga0496123_0014804 Ga0496123_0014804_2949_3863 304
247 3300048926 Ga0496123_0017682 Ga0496123_0017682_3380_4294 304
248 3300048926 Ga0496123_0064429 Ga0496123_0064429_1018_1947 304
249 3300048927 Ga0496124_0002143 Ga0496124_0002143_10186_11100 304
250 3300048927 Ga0496124_0007551 Ga0496124_0007551_6057_6971 304
251 3300048927 Ga0496124_0019451 Ga0496124_0019451_4414_5343 304
252 3300048928 Ga0496125_0000155 Ga0496125_0000155_90710_91639 304
253 3300048928 Ga0496125_0000537 Ga0496125_0000537_19904_20818 304
254 3300048928 Ga0496125_0016363 Ga0496125_0016363_261_1175 304
255 3300048928 Ga0496125_0204797 Ga0496125_0204797_57_971 304
256 3300048929 Ga0496126_0001377 Ga0496126_0001377_36466_37380 304
257 3300049570 Ga0501033_0004037 Ga0501033_0004037_227_1141 304
258 3300049579 Ga0501043_0045487 Ga0501043_0045487_2261_3184 304
259 3300049822 Ga0501035_0003672 Ga0501035_0003672_6764_7678 304
260 3300050491 nmdc:mga00v17_96228_c1 nmdc:mga00v17_96228_c1_890_1819 304
261 3300050496 nmdc:mga07m45_1250_c1 nmdc:mga07m45_1250_c1_190_1104 304
262 3300050516 nmdc:mga0sz30_37940_c1 nmdc:mga0sz30_37940_c1_822_1736 304
263 3300053160 Ga0500633_0000072 Ga0500633_0000072_13452_14366 304
264 3300003775 Ga0055524_1003377 Ga0055524_10033773 306
265 3300003790 Ga0055528_1000018 Ga0055528_1000018102 306
266 3300025273 Ga0209673_1000055 Ga0209673_1000055102 306
267 3300025295 Ga0209564_1030405 Ga0209564_10304052 306
268 3300025299 Ga0209256_1000147 Ga0209256_1000147102 306
269 3300046515 Ga0495620_0082063 Ga0495620_0082063_332_1252 306
270 3300047469 Ga0495673_0000060 Ga0495673_0000060_138418_139338 306
271 3300048922 Ga0496119_0046429 Ga0496119_0046429_413_1351 306
272 3300048927 Ga0496124_0010695 Ga0496124_0010695_3762_4682 306
273 3300049459 Ga0495678_000010 Ga0495678_000010_215974_216894 306
274 iso_pu_bacteria 2738541297 2738828747 306
275 iso_pu_bacteria 2738541357 2739152543 306
276 iso_pu_bacteria 2738543003 2739194463 306
277 iso_pu_bacteria 2738543026 2739320939 306
278 iso_pu_bacteria 2738543029 2739339180 306
279 iso_pu_bacteria 2818991449 2819616641 306
280 iso_pu_bacteria 2821131069 2821132983 306
281 iso_pu_bacteria 2857564685 2857568361 306
282 iso_pu_bacteria 2888366609 2888369813 306
283 iso_pu_bacteria 2904504865 2904507715 306
284 iso_pu_bacteria 2908669403 2908670388 306
285 iso_pu_bacteria 2919046199 2919047212 306
286 iso_pu_bacteria 2919108558 2919110034 306
287 iso_pu_bacteria 2919476304 2919480099 306
288 iso_pu_bacteria 2939573065 2939574147 306
289 iso_pu_bacteria 2984559226 2984559309 306
290 iso_pu_bacteria 2984595703 2984595836 306
291 3300003322 rootL2_10257257 rootL2_102572572 307
292 3300003323 rootH1_10167705 rootH1_101677053 307
293 3300013104 Ga0157370_10085679 Ga0157370_100856792 307
294 3300025904 Ga0207647_10000020 Ga0207647_1000002066 307
295 3300048920 Ga0496117_0008794 Ga0496117_0008794_6550_7473 307
296 3300048921 Ga0496118_0000307 Ga0496118_0000307_52353_53276 307
297 3300048924 Ga0496121_0000108 Ga0496121_0000108_90365_91288 307
298 3300048926 Ga0496123_0028984 Ga0496123_0028984_708_1631 307
299 3300003323 rootH1_10043892 rootH1_1004389221 309
300 3300002737 JGI25162J39368_1000092 JGI25162J39368_10000929 310
301 3300002737 JGI25162J39368_1004253 JGI25162J39368_10042531 310
302 3300002771 JGI25163J39215_1000365 JGI25163J39215_100036511 310
303 3300002772 JGI25164J39214_1000071 JGI25164J39214_10000719 310
304 3300002773 JGI25152J39213_1002373 JGI25152J39213_10023736 310
305 3300003215 JGI25153J46596_10004772 JGI25153J46596_100047724 310
306 3300003751 Ga0055538_1000064 Ga0055538_10000649 310
307 3300003752 Ga0055539_1000098 Ga0055539_10000989 310
308 3300003756 Ga0055533_1000108 Ga0055533_10001089 310
309 3300003759 Ga0055525_1000141 Ga0055525_10001419 310
310 3300003841 Ga0055541_1000065 Ga0055541_100006582 310
311 3300005289 Ga0065704_10000614 Ga0065704_1000061410 310
312 3300005289 Ga0065704_10077939 Ga0065704_100779394 310
313 3300006946 Ga0079104_1000240 Ga0079104_100024067 310
314 3300014497 Ga0182008_10002933 Ga0182008_100029331 310
315 3300025224 Ga0209784_100001 Ga0209784_1000011809 310
316 3300025225 Ga0209566_100001 Ga0209566_1000011809 310
317 3300025226 Ga0209674_100002 Ga0209674_1000021809 310
318 3300025230 Ga0209563_100002 Ga0209563_100002344 310
319 3300025231 Ga0207427_100020 Ga0207427_100020433 310
320 3300025233 Ga0209437_100001 Ga0209437_100001344 310
321 3300025233 Ga0209437_100261 Ga0209437_1002617 310
322 3300025253 Ga0209677_100002 Ga0209677_100002344 310
323 3300025258 Ga0209129_1000673 Ga0209129_10006736 310
324 3300025294 Ga0209025_1007034 Ga0209025_10070345 310
325 3300025297 Ga0209758_1000592 Ga0209758_10005926 310
326 3300025711 Ga0207696_1000030 Ga0207696_100003010 310
327 3300025913 Ga0207695_10002671 Ga0207695_100026715 310
328 3300027111 Ga0209281_1000313 Ga0209281_100031323 310
329 3300027312 Ga0209371_1000735 Ga0209371_10007358 310
330 3300030500 Ga0268256_1000625 Ga0268256_100062519 310
331 3300046452 Ga0495617_000021 Ga0495617_000021_177110_178045 310
332 3300046453 Ga0495627_000011 Ga0495627_000011_210441_211394 310
333 3300046460 Ga0495638_0078413 Ga0495638_0078413_284_1219 310
334 3300046471 Ga0495650_0005507 Ga0495650_0005507_2494_3429 310
335 3300046471 Ga0495650_0006241 Ga0495650_0006241_6078_7013 310
336 3300046492 Ga0495585_0000583 Ga0495585_0000583_24652_25587 310
337 3300046492 Ga0495585_0018378 Ga0495585_0018378_2813_3811 310
338 3300046507 Ga0495606_0241573 Ga0495606_0241573_43_978 310
339 3300046512 Ga0495610_0000010 Ga0495610_0000010_499866_500801 310
340 3300046522 Ga0495643_0087045 Ga0495643_0087045_559_1512 310
341 3300046524 Ga0495648_0008959 Ga0495648_0008959_862_1797 310
342 3300046524 Ga0495648_0014203 Ga0495648_0014203_3190_4125 310
343 3300046530 Ga0495654_0001972 Ga0495654_0001972_3424_4359 310
344 3300046538 Ga0495609_0000112 Ga0495609_0000112_4658_5611 310
345 3300046558 Ga0495633_0011613 Ga0495633_0011613_2311_3246 310
346 3300046616 Ga0495668_0000225 Ga0495668_0000225_54795_55730 310
347 3300046665 Ga0495661_0050253 Ga0495661_0050253_731_1666 310
348 3300046692 Ga0495671_0000002 Ga0495671_0000002_572578_573513 310
349 3300046692 Ga0495671_0066244 Ga0495671_0066244_796_1731 310
350 3300046810 Ga0495660_0001316 Ga0495660_0001316_11697_12650 310
351 3300046810 Ga0495660_0022716 Ga0495660_0022716_1217_2152 310
352 3300047446 Ga0495679_031398 Ga0495679_031398_386_1321 310
353 3300047469 Ga0495673_0000026 Ga0495673_0000026_438885_439820 310
354 3300048919 Ga0496116_0022805 Ga0496116_0022805_545_1498 310
355 3300048924 Ga0496121_0011468 Ga0496121_0011468_5509_6447 310
356 3300048925 Ga0496122_0034489 Ga0496122_0034489_928_1863 310
357 3300048929 Ga0496126_0012664 Ga0496126_0012664_4700_5680 310
358 3300053145 Ga0500586_000567 Ga0500586_000567_5897_6832 310
359 3300053104 Ga0500556_0000096 Ga0500556_0000096_20841_21824 316
360 iso_pu_bacteria 2585427591 2585825538 316
361 iso_pu_bacteria 2585427592 2585831988 316
362 iso_pu_bacteria 2937972304 2937974921 317
363 iso_pu_bacteria 2958034702 2958036889 317
364 iso_pu_bacteria 2968016561 2968019125 317
365 iso_pu_bacteria 2970469710 2970472387 317
366 iso_pu_bacteria 2970593180 2970595530 317
367 iso_pu_bacteria 2996348954 2996351259 317
368 iso_pu_bacteria 3004275668 3004277957 317
369 3300048925 Ga0496122_0015879 Ga0496122_0015879_1342_2328 318
370 3300048926 Ga0496123_0003865 Ga0496123_0003865_11556_12542 318
371 3300048922 Ga0496119_0069272 Ga0496119_0069272_478_1440 320
372 3300046558 Ga0495633_0000277 Ga0495633_0000277_47071_48039 322
373 2162886007 SwRhRL2b_contig_3622374 SwRhRL2b_0538.00005220 323
374 3300009036 Ga0105244_10001695 Ga0105244_100016952 323
375 3300009036 Ga0105244_10006903 Ga0105244_100069035 323
376 3300009092 Ga0105250_10000582 Ga0105250_100005827 323
377 3300009092 Ga0105250_10002350 Ga0105250_100023504 323
378 3300009093 Ga0105240_10021177 Ga0105240_100211777 323
379 3300025207 Ga0209760_100189 Ga0209760_10018925 323
380 3300025261 Ga0209233_1000788 Ga0209233_100078818 323
381 3300025711 Ga0207696_1002265 Ga0207696_10022654 323
382 3300025728 Ga0207655_1000737 Ga0207655_100073721 323
383 3300025728 Ga0207655_1001960 Ga0207655_100196017 323
384 3300042006 Ga0439432_003574 Ga0439432_003574_1084_2055 323
385 3300046524 Ga0495648_0001919 Ga0495648_0001919_372_1355 323
386 3300046810 Ga0495660_0000014 Ga0495660_0000014_265987_266958 323
387 3300048919 Ga0496116_0000288 Ga0496116_0000288_70369_71340 323
388 3300048920 Ga0496117_0011554 Ga0496117_0011554_3284_4255 323
389 3300048921 Ga0496118_0012914 Ga0496118_0012914_1382_2353 323
390 3300048922 Ga0496119_0001038 Ga0496119_0001038_2449_3420 323
391 3300048923 Ga0496120_0010412 Ga0496120_0010412_2449_3420 323
392 3300048924 Ga0496121_0030836 Ga0496121_0030836_926_1918 323
393 3300048927 Ga0496124_0022829 Ga0496124_0022829_1481_2452 323
394 3300048928 Ga0496125_0000033 Ga0496125_0000033_337941_338912 323
395 3300048928 Ga0496125_0009652 Ga0496125_0009652_3547_4518 323
396 3300048929 Ga0496126_0002712 Ga0496126_0002712_18459_19430 323

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

8

66

0.97

PF03466

LysR_substrate

LysR substrate binding domain

90

298

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
5xxp-assembly1.cif.gz_B crystal structure of cbnr_dbd-dna complex 0.9488 20 103
5z4y-assembly1.cif.gz_B crystal structure of pacysb ntd domain with space group p4 0.9326 20 102
5z4z-assembly1.cif.gz_A crystal structure of pacysb ntd domain with space group c2 0.9234 20 100
7trv-assembly1.cif.gz_B crystal structure of the dna-binding domain of the lysr family transcriptional regulator yfba from yersinia pestis 0.9187 20 100
5z4z-assembly2.cif.gz_C-2 crystal structure of pacysb ntd domain with space group c2 0.912 20 102
ID Description Score Start End Superfamily
af_P37641_3_87_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9916 20 96 1.10.10.10
af_P23841_7_96_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9869 20 103 1.10.10.10
af_Q47141_1_83_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9857 20 99 1.10.10.10
af_P76250_6_90_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9831 20 100 1.10.10.10
af_P0A8R9_1_82_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9805 20 98 1.10.10.10
ID Description Score Start End GO Terms
AF-U7QZN4-F1-model_v4 LysR substrate-binding domain-containing protein 0.8779 119 313 GO:0003700
GO:0006351
GO:0043565
AF-U7QZN4-F1-model_v4 LysR substrate-binding domain-containing protein 0.8693 119 313 GO:0003700
GO:0006351
GO:0043565
AF-A0A540WHB1-F1-model_v4 LysR family transcriptional regulator 0.8429 107 270 GO:0003700
AF-A0A7W8USC6-F1-model_v4 DNA-binding transcriptional LysR family regulator 0.8317 113 308 GO:0003700
GO:0006351
GO:0043565
AF-A0A3D3AT53-F1-model_v4 deleted 0.8207 94 308

Feature Viewer

pLDDT pTM Quality
85.97 0.69 Medium
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map