F426298

General Info

Members Datasets Scaffolds Average Seq Length
373 258 746 212

Family's Representative Sequence

Representative Sequence 3300005937|Ga0081455_10165026|Ga0081455_101650262
Length 237
Sequence MSAIRLLVLGAVRQHGRAHGYQVRNDLEYWGAHEWSNAKPGSIYHALKQMAKQGLLHAHEIAPSTAGGPPRTEYELTGRGTEEYLRLLREALTSYDQKMDVKSAAIGFMVDLPRAEAVALLKERIRRTEAWRSSVTEHYIPEDGPEQLGHIGEIMNLWVHTADAEAAWTQGLIGRIEGGAYTFAGEGDPFVGVLADDAENPYATGERHPEIARWLGVVADTEGEELARLDGTRRSDS

Samples

Sample ID Description Type Environment
1 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
4 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
5 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
6 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
7 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
10 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
11 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
12 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
13 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
14 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
15 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
16 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
17 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
18 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
19 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
20 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
21 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
22 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
23 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
24 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
25 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
26 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
27 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
32 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
34 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
35 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
36 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
37 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
38 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
39 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
40 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
41 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
42 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
43 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
44 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
45 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
46 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
47 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
48 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
49 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
50 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
51 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
52 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
53 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
54 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
55 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
56 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
57 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
58 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
59 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
60 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
61 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
62 3300042137 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913F_E14_072516_1519 Metagenome Rhizosphere
63 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
64 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
65 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
66 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
67 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
68 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
69 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
70 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
71 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
72 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
73 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
74 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
75 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
76 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
77 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
78 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
79 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
80 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
81 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
82 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
83 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
84 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
85 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
86 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
87 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
88 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
89 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
90 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
91 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
92 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
93 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
94 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
95 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
96 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
97 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
98 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
99 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
100 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
101 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
102 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
103 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
104 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
105 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
106 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
107 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
108 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
109 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
110 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
111 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
112 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
113 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
114 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
115 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
116 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
117 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
118 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
119 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
120 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
121 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
122 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
123 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
124 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
125 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
126 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
127 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
128 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
129 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
130 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
131 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
132 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
133 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
134 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
135 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
136 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
137 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
138 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
139 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
140 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
141 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
142 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
143 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
144 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
145 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
146 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
147 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
148 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
149 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
150 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
151 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
152 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
153 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
154 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
155 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
156 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
157 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
158 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
159 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
160 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
161 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
162 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
163 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
164 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
165 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
166 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
167 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
168 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
169 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
170 2582581312 Streptomyces atratus OK008 Isolate Rhizosphere
171 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
172 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
173 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
174 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
175 2643221548 Streptomyces sp. Root55 Isolate Unclassified
176 2643221578 Streptomyces sp. Root63 Isolate Unclassified
177 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
178 2643221647 Streptomyces sp. Root369 Isolate Unclassified
179 2643221670 Streptomyces sp. Root431 Isolate Unclassified
180 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
181 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
182 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
183 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
184 2643221714 Streptomyces sp. Root264 Isolate Unclassified
185 2767802112 Streptomyces avicenniae NRRL B-24776 Isolate Rhizosphere
186 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
187 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
188 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
189 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
190 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
191 2802429296 Streptomyces sampsonii KJ40 Isolate Rhizosphere
192 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
193 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
194 2808606448 Streptomyces sp. 193411 Isolate Unclassified
195 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
196 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
197 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
198 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
199 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
200 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
201 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
202 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
203 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
204 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
205 2862574272 Streptomyces sp. AcE210 Isolate Nodule
206 2862705112 Streptomyces triticirhizae NEAU-YY642 Isolate Rhizosphere
207 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
208 2867346516 Streptomyces radicis AZ1-7 Isolate Unclassified
209 2867369537 Streptomyces sp. Z26 Isolate Unclassified
210 2867428634 Streptomyces sp. RP5T Isolate Unclassified
211 2867475112 Streptomyces sp. TM32 Isolate Unclassified
212 2868088558 Phytoactinopolyspora endophytica EGI 60009 Isolate Unclassified
213 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
214 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
215 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
216 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
217 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
218 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
219 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
220 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
221 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
222 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
223 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
224 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
225 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
226 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
227 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
228 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
229 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
230 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
231 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
232 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
233 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
234 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
235 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
236 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
237 2990044586 Streptomyces sedi JCM 16909 Isolate Unclassified
238 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
239 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified
240 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
241 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
242 3006425503 Streptomyces zingiberis PLAI1-29 Isolate Unclassified
243 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
244 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
245 8008485437 Streptomyces mimosae 3MP-10 Isolate Unclassified
246 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
247 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
248 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
249 8025413630 Streptomyces sp. CAI-17 Isolate Rhizosphere
250 8025524527 Streptomyces sp. 3MP-14 Isolate Unclassified
251 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
252 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
253 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
254 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
255 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
256 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
257 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
258 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 74.8
Metatranscriptomes 0.27
Isolates 24.93

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.02
Nodule 1.07
Rhizoplane 1.61
Rhizosphere 72.92
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0081455_10165026 3300005937 Bacteria 1693
2 JGI24739J22299_10068190 3300001989 Bacteria 1111
3 JGI24738J21930_10006466 3300002075 Bacteria 2748
4 rootH1_10012336 3300003316 Bacteria 4014
5 rootL2_10108360 3300003322 Bacteria 2412
6 rootL2_10226675 3300003322 Bacteria 1024
7 rootH1_10069608 3300003323 Bacteria 1927
8 Ga0006562J51391_1042536 3300003578 Bacteria 4380
9 Ga0070668_100881517 3300005347 Bacteria 799
10 Ga0070663_100381000 3300005455 Bacteria 1149
11 Ga0070681_10766817 3300005458 Bacteria 881
12 Ga0068853_100037087 3300005539 Bacteria 4146
13 Ga0075363_100006677 3300006048 Bacteria 5263
14 Ga0075367_10005092 3300006178 Bacteria 6487
15 Ga0099826_10081941 3300006948 Bacteria 2006
16 Ga0105251_10010755 3300009011 Bacteria 5278
17 Ga0105244_10099400 3300009036 Bacteria 1424
18 Ga0105243_10068260 3300009148 Bacteria 2865
19 Ga0105248_10106596 3300009177 Bacteria 3160
20 Ga0105237_10814812 3300009545 Bacteria 940
21 Ga0105246_10000799 3300011119 Bacteria 17870
22 Ga0157369_10048977 3300013105 Bacteria 4582
23 Ga0157375_11758934 3300013308 Bacteria 734
24 Ga0157376_10531809 3300014969 Bacteria 1160
25 Ga0183367_1015 3300015688 Bacteria 298435
26 Ga0209758_1009589 3300025297 Bacteria 5980
27 Ga0207426_1008470 3300025302 Bacteria 4148
28 Ga0207426_1010477 3300025302 Bacteria 3594
29 Ga0207426_1012882 3300025302 Bacteria 3122
30 Ga0207696_1089073 3300025711 Bacteria 846
31 Ga0207647_10031353 3300025904 Bacteria 3421
32 Ga0207709_10026231 3300025935 Bacteria 3344
33 Ga0207639_10040203 3300026041 Bacteria 3489
34 Ga0209371_1008434 3300027312 Bacteria 3429
35 Ga0268266_10756074 3300028379 Bacteria 938
36 Ga0307517_10023005 3300028786 Bacteria 7776
37 Ga0307515_10001114 3300028794 Bacteria 61489
38 Ga0307515_10110201 3300028794 Bacteria 3224
39 Ga0268256_1008793 3300030500 Bacteria 3429
40 Ga0307511_10001531 3300030521 Bacteria 24470
41 Ga0307511_10059125 3300030521 Bacteria 2952
42 Ga0307511_10062284 3300030521 Bacteria 2833
43 Ga0307512_10004639 3300030522 Bacteria 14919
44 Ga0307512_10209523 3300030522 Bacteria 1039
45 Ga0307513_10007578 3300031456 Bacteria 14030
46 Ga0307509_10022053 3300031507 Bacteria 7189
47 Ga0307509_10024207 3300031507 Bacteria 6802
48 Ga0307508_10000756 3300031616 Bacteria 38283
49 Ga0307508_10018499 3300031616 Bacteria 6333
50 Ga0307514_10027767 3300031649 Bacteria 4571
51 Ga0307514_10249636 3300031649 Bacteria 1052
52 Ga0307514_10254574 3300031649 Bacteria 1035
53 Ga0307516_10019148 3300031730 Bacteria 7095
54 Ga0307516_10096772 3300031730 Bacteria 2772
55 Ga0307413_10307688 3300031824 Bacteria 1205
56 Ga0307518_10050528 3300031838 Bacteria 3023
57 Ga0307518_10089483 3300031838 Bacteria 2216
58 Ga0307518_10113560 3300031838 Bacteria 1927
59 Ga0307416_100015308 3300032002 Bacteria 5294
60 Ga0307416_100603745 3300032002 Bacteria 1177
61 Ga0307507_10014669 3300033179 Bacteria 9315
62 Ga0307507_10015162 3300033179 Bacteria 9095
63 Ga0307507_10022354 3300033179 Bacteria 6989
64 Ga0307507_10172530 3300033179 Bacteria 1567
65 Ga0307510_10011904 3300033180 Bacteria 10315
66 Ga0307510_10015345 3300033180 Bacteria 9056
67 Ga0307510_10060151 3300033180 Bacteria 3913
68 Ga0307510_10257899 3300033180 Bacteria 1226
69 Ga0395900_0211321 3300037418 Bacteria 1959
70 Ga0395898_0006911 3300037466 Bacteria 12065
71 Ga0395898_0018159 3300037466 Bacteria 7179
72 Ga0395898_0096234 3300037466 Bacteria 2844
73 Ga0395901_0119621 3300038443 Bacteria 2768
74 Ga0395901_0126049 3300038443 Bacteria 2691
75 Ga0439436_0000294 3300041404 Bacteria 12101
76 Ga0439436_0001249 3300041404 Bacteria 7254
77 Ga0451800_0761060 3300041459 Bacteria 1287
78 Ga0451802_1471088 3300041460 Bacteria 980
79 Ga0451853_0440186 3300041512 Bacteria 3584
80 Ga0451853_3342380 3300041512 Bacteria 2928
81 Ga0451853_3352522 3300041512 Bacteria 5877
82 Ga0439442_007499 3300042002 Bacteria 2194
83 Ga0439432_015909 3300042006 Bacteria 2534
84 Ga0439449_0003614 3300042007 Bacteria 6003
85 Ga0439455_0000270 3300042012 Bacteria 6348
86 Ga0439457_000100 3300042014 Bacteria 20035
87 Ga0439457_001473 3300042014 Bacteria 7069
88 Ga0450894_000116 3300042131 Bacteria 13597
89 Ga0450898_000184 3300042134 Bacteria 6575
90 Ga0450902_022809 3300042137 Bacteria 1038
91 Ga0450903_010483 3300042138 Bacteria 1499
92 Ga0439458_0003284 3300042157 Bacteria 3814
93 Ga0450908_003525 3300042184 Bacteria 3047
94 Ga0466972_0027777 3300044658 Bacteria 2797
95 Ga0466965_0037193 3300044683 Bacteria 2390
96 Ga0466965_0104633 3300044683 Bacteria 1450
97 Ga0466963_0005571 3300044694 Bacteria 7380
98 Ga0466970_0002075 3300044765 Bacteria 9695
99 Ga0466967_0024910 3300045976 Bacteria 4926
100 Ga0495617_058722 3300046452 Bacteria 1274
101 Ga0495627_018884 3300046453 Bacteria 2318
102 Ga0495592_0010649 3300046454 Bacteria 6933
103 Ga0495592_0022154 3300046454 Bacteria 4834
104 Ga0495592_0024209 3300046454 Bacteria 4616
105 Ga0495603_0000673 3300046455 Bacteria 19378
106 Ga0495603_0003326 3300046455 Bacteria 9570
107 Ga0495603_0014417 3300046455 Bacteria 4780
108 Ga0495603_0015529 3300046455 Bacteria 4609
109 Ga0495603_0133472 3300046455 Bacteria 1445
110 Ga0495629_0000747 3300046459 Bacteria 26255
111 Ga0495629_0017556 3300046459 Bacteria 5129
112 Ga0495629_0053035 3300046459 Bacteria 2837
113 Ga0495629_0089938 3300046459 Bacteria 2141
114 Ga0495629_0134654 3300046459 Bacteria 1720
115 Ga0495629_0315811 3300046459 Bacteria 1068
116 Ga0495638_0055986 3300046460 Bacteria 2447
117 Ga0495638_0081598 3300046460 Bacteria 1963
118 Ga0495651_0001084 3300046462 Bacteria 21005
119 Ga0495651_0002976 3300046462 Bacteria 13073
120 Ga0495653_0104654 3300046463 Bacteria 2045
121 Ga0495653_0166705 3300046463 Bacteria 1524
122 Ga0495580_0162359 3300046472 Bacteria 1546
123 Ga0495582_0030672 3300046473 Bacteria 2953
124 Ga0495582_0164915 3300046473 Bacteria 1261
125 Ga0495605_0003483 3300046474 Bacteria 9363
126 Ga0495639_0071934 3300046475 Bacteria 1598
127 Ga0495662_0000188 3300046476 Bacteria 25114
128 Ga0495662_0001092 3300046476 Bacteria 13336
129 Ga0495662_0197639 3300046476 Bacteria 991
130 Ga0495662_0215061 3300046476 Bacteria 947
131 Ga0495664_0002737 3300046477 Bacteria 9480
132 Ga0495664_0007932 3300046477 Bacteria 5910
133 Ga0495664_0244392 3300046477 Bacteria 1085
134 Ga0495584_0039671 3300046491 Bacteria 2379
135 Ga0495585_0051378 3300046492 Bacteria 2285
136 Ga0495585_0228095 3300046492 Bacteria 937
137 Ga0495594_0004897 3300046499 Bacteria 6891
138 Ga0495594_0024059 3300046499 Bacteria 3268
139 Ga0495594_0039954 3300046499 Bacteria 2566
140 Ga0495594_0358493 3300046499 Bacteria 830
141 Ga0495596_0026303 3300046500 Bacteria 2346
142 Ga0495607_0010141 3300046501 Bacteria 6340
143 Ga0495607_0116125 3300046501 Bacteria 1412
144 Ga0495583_0077019 3300046506 Bacteria 1455
145 Ga0495606_0103557 3300046507 Bacteria 1728
146 Ga0495616_0044517 3300046513 Bacteria 2250
147 Ga0495618_0013512 3300046514 Bacteria 4966
148 Ga0495618_0019961 3300046514 Bacteria 4124
149 Ga0495620_0010806 3300046515 Bacteria 4800
150 Ga0495628_0050485 3300046516 Bacteria 3290
151 Ga0495628_0057447 3300046516 Bacteria 3061
152 Ga0495630_0094354 3300046517 Bacteria 2262
153 Ga0495643_0007830 3300046522 Bacteria 6830
154 Ga0495648_0023389 3300046524 Bacteria 4232
155 Ga0495666_0011429 3300046526 Bacteria 4424
156 Ga0495642_0005749 3300046528 Bacteria 4758
157 Ga0495652_0013075 3300046529 Bacteria 7477
158 Ga0495652_0085315 3300046529 Bacteria 2595
159 Ga0495652_0745916 3300046529 Bacteria 655
160 Ga0495640_0157210 3300046533 Bacteria 1459
161 Ga0495586_0040660 3300046535 Bacteria 2503
162 Ga0495587_0039731 3300046536 Bacteria 2814
163 Ga0495587_0088765 3300046536 Bacteria 1788
164 Ga0495645_0016133 3300046543 Bacteria 5325
165 Ga0495622_0009364 3300046557 Bacteria 4531
166 Ga0495622_0072480 3300046557 Bacteria 1589
167 Ga0495622_0112781 3300046557 Bacteria 1244
168 Ga0495633_0088204 3300046558 Bacteria 1442
169 Ga0495634_0006610 3300046642 Bacteria 8794
170 Ga0495634_0197149 3300046642 Bacteria 1252
171 Ga0495611_0017497 3300046648 Bacteria 3067
172 Ga0495625_0038233 3300046660 Bacteria 3515
173 Ga0495625_0044391 3300046660 Bacteria 3218
174 Ga0495625_0177304 3300046660 Bacteria 1419
175 Ga0495635_0001573 3300046663 Bacteria 15328
176 Ga0495635_0011488 3300046663 Bacteria 6208
177 Ga0495635_0012648 3300046663 Bacteria 5918
178 Ga0495661_0073938 3300046665 Bacteria 1984
179 Ga0495588_0004690 3300046674 Bacteria 6037
180 Ga0495588_0028944 3300046674 Bacteria 2776
181 Ga0495599_0268317 3300046678 Bacteria 1036
182 Ga0495599_0278153 3300046678 Bacteria 1014
183 Ga0495623_0224491 3300046679 Bacteria 1068
184 Ga0495646_0000131 3300046680 Bacteria 37843
185 Ga0495646_0001046 3300046680 Bacteria 16023
186 Ga0495646_0249849 3300046680 Bacteria 950
187 Ga0495658_0036474 3300046683 Bacteria 2713
188 Ga0495658_0058927 3300046683 Bacteria 2197
189 Ga0495613_0000387 3300046689 Bacteria 38006
190 Ga0495613_0003712 3300046689 Bacteria 11455
191 Ga0495613_0012734 3300046689 Bacteria 6253
192 Ga0495613_0079070 3300046689 Bacteria 2391
193 Ga0495613_0121725 3300046689 Bacteria 1873
194 Ga0495670_0027766 3300046691 Bacteria 2806
195 Ga0495670_0389691 3300046691 Bacteria 752
196 Ga0495671_0011485 3300046692 Bacteria 4867
197 Ga0495649_0058768 3300046694 Bacteria 2071
198 Ga0495649_0077502 3300046694 Bacteria 1779
199 Ga0495589_0019601 3300046794 Bacteria 3463
200 Ga0495589_0030979 3300046794 Bacteria 2693
201 Ga0495589_0034659 3300046794 Bacteria 2532
202 Ga0495589_0047116 3300046794 Bacteria 2137
203 Ga0495589_0088782 3300046794 Bacteria 1501
204 Ga0495600_0004740 3300046809 Bacteria 8157
205 Ga0495600_0048627 3300046809 Bacteria 2766
206 Ga0495660_0235568 3300046810 Bacteria 855
207 Ga0495581_0006128 3300047315 Bacteria 6970
208 Ga0495581_0006810 3300047315 Bacteria 6626
209 Ga0495581_0028930 3300047315 Bacteria 3213
210 Ga0495604_0000410 3300047317 Bacteria 38721
211 Ga0495604_0000991 3300047317 Bacteria 23613
212 Ga0495604_0051888 3300047317 Bacteria 3177
213 Ga0495636_0000569 3300047318 Bacteria 13591
214 Ga0495636_0002326 3300047318 Bacteria 7302
215 Ga0495636_0005046 3300047318 Bacteria 5184
216 Ga0495636_0053071 3300047318 Bacteria 1701
217 Ga0495636_0070000 3300047318 Bacteria 1496
218 Ga0495636_0275150 3300047318 Bacteria 783
219 Ga0495672_0080979 3300047320 Bacteria 1809
220 Ga0495676_0003902 3300047321 Bacteria 13558
221 Ga0495676_0005214 3300047321 Bacteria 11891
222 Ga0495676_0007823 3300047321 Bacteria 9807
223 Ga0495676_0056077 3300047321 Bacteria 3118
224 Ga0495676_0064905 3300047321 Bacteria 2836
225 Ga0495676_0067187 3300047321 Bacteria 2774
226 Ga0495680_0009376 3300047322 Bacteria 8806
227 Ga0495687_001086 3300047443 Bacteria 26711
228 Ga0495687_002593 3300047443 Bacteria 14229
229 Ga0495675_0106175 3300047444 Bacteria 1755
230 Ga0495685_006978 3300047447 Bacteria 3716
231 Ga0495685_008660 3300047447 Bacteria 3385
232 Ga0495685_008672 3300047447 Bacteria 3383
233 Ga0495685_083221 3300047447 Bacteria 1064
234 Ga0495673_0061411 3300047469 Bacteria 1609
235 Ga0495681_0001161 3300047470 Bacteria 19970
236 Ga0495684_0123099 3300047471 Bacteria 1952
237 Ga0495684_0141821 3300047471 Bacteria 1801
238 Ga0495686_0015503 3300047472 Bacteria 5199
239 Ga0495686_0232757 3300047472 Bacteria 1042
240 Ga0495593_0000306 3300047673 Bacteria 26814
241 Ga0495593_0004084 3300047673 Bacteria 8682
242 Ga0495602_0006179 3300048088 Bacteria 12561
243 Ga0495602_0039704 3300048088 Bacteria 4330
244 Ga0495602_0131555 3300048088 Bacteria 1995
245 Ga0495614_0000427 3300048089 Bacteria 17258
246 Ga0495614_0001434 3300048089 Bacteria 10298
247 Ga0495614_0021546 3300048089 Bacteria 2782
248 Ga0495614_0024115 3300048089 Bacteria 2627
249 Ga0495626_0007341 3300048091 Bacteria 6141
250 Ga0496108_0039774 3300048911 Bacteria 3919
251 Ga0496109_0011912 3300048912 Bacteria 7488
252 Ga0496113_0091932 3300048916 Bacteria 2340
253 Ga0495678_044378 3300049459 Bacteria 1758
254 Ga0501031_0356271 3300049568 Bacteria 947
255 Ga0501032_0394478 3300049569 Bacteria 889
256 Ga0501034_0322517 3300049571 Bacteria 1477
257 Ga0501037_0209964 3300049573 Bacteria 1373
258 Ga0501043_0258362 3300049579 Bacteria 1340
259 Ga0501047_0056820 3300049581 Bacteria 3785
260 Ga0501047_0257096 3300049581 Bacteria 1594
261 Ga0501070_0138840 3300049586 Bacteria 2007
262 Ga0501070_0818756 3300049586 Bacteria 730
263 Ga0501074_0419614 3300049590 Bacteria 949
264 Ga0501235_055308 3300049669 Bacteria 924
265 Ga0501080_0021540 3300049742 Bacteria 5966
266 Ga0501035_0085874 3300049822 Bacteria 2773
267 Ga0501044_0019102 3300049823 Bacteria 7337
268 Ga0501044_0143584 3300049823 Bacteria 2374
269 nmdc:mga06z11_1256_c1 3300050494 Bacteria 9378
270 Ga0495601_0126758 3300053077 Bacteria 1661
271 Ga0495619_0034847 3300053085 Bacteria 3273
272 Ga0495619_0106323 3300053085 Bacteria 1914
273 Ga0500583_0163107 3300053092 Bacteria 1110
274 Ga0500640_009671 3300053095 Bacteria 3862
275 Ga0500650_0165471 3300053098 Bacteria 1019
276 Ga0500560_000641 3300053107 Bacteria 5142
277 Ga0500614_039860 3300053123 Bacteria 1189
278 Ga0500600_0111328 3300053149 Bacteria 1427
279 Ga0500600_0197996 3300053149 Bacteria 949
280 Ga0500633_0083009 3300053160 Bacteria 1162
281 2547411622 2547132111 Bacteria 8013147
282 2554257049 2554235005 Bacteria 6457341
283 2585298054 2582581312 Bacteria 7308206
284 2585305160 2582581313 Bacteria 10042643
285 2585318332 2582581314 Bacteria 11452267
286 2616701495 2616644814 Bacteria 11555299
287 2616903638 2616644941 Bacteria 8510691
288 2643763471 2643221548 Bacteria 8053412
289 2643899724 2643221578 Bacteria 9213798
290 2643947618 2643221587 Bacteria 7586415
291 2644266153 2643221647 Bacteria 10741251
292 2644390201 2643221670 Bacteria 6497041
293 2644403692 2643221673 Bacteria 9196637
294 2644435310 2643221677 Bacteria 7584031
295 2644437572 2643221678 Bacteria 9540101
296 2644463661 2643221682 Bacteria 6743283
297 2644627969 2643221714 Bacteria 9015452
298 2768642059 2767802112 Bacteria 6465194
299 2784589388 2784132148 Bacteria 8627943
300 2785342189 2784746763 Bacteria 9783172
301 2785370466 2784746768 Bacteria 10036182
302 2786671622 2786546132 Bacteria 10419719
303 2793977819 2791355406 Bacteria 11364898
304 2804845898 2802429296 Bacteria 7227771
305 2804849620 2802429296 Bacteria 7227771
306 2808843027 2808606359 Bacteria 9866990
307 2808921371 2808606375 Bacteria 9466072
308 2809233050 2808606448 Bacteria 8656184
309 2811845374 2808606982 Bacteria 7791042
310 2812357100 2811994879 Bacteria 9313447
311 2812479753 2811994917 Bacteria 7761064
312 2819698253 2818991463 Bacteria 7948711
313 2852640038 2852635781 Bacteria 8251373
314 2862179472 2862178590 Bacteria 8583590
315 2862286653 2862281513 Bacteria 9621493
316 2862294600 2862290372 Bacteria 7471434
317 2862387932 2862382967 Bacteria 10317375
318 2862510243 2862507626 Bacteria 9425308
319 2862578462 2862574272 Bacteria 10567477
320 2862706285 2862705112 Bacteria 6563286
321 2863411873 2863404153 Bacteria 9672205
322 2867348552 2867346516 Bacteria 7608576
323 2867372934 2867369537 Bacteria 6501581
324 2867435687 2867428634 Bacteria 9590268
325 2867477433 2867475112 Bacteria 6909112
326 2868095205 2868088558 Bacteria 7609351
327 2873154970 2873151551 Bacteria 8625867
328 2875394695 2875391855 Bacteria 7600475
329 2877680155 2877676314 Bacteria 9512378
330 2912718740 2912715099 Bacteria 9460473
331 2912761846 2912757875 Bacteria 7940295
332 2918504633 2918501144 Bacteria 8668083
333 2919471443 2919468124 Bacteria 9133025
334 2946049941 2946045630 Bacteria 8527308
335 2946068782 2946064051 Bacteria 8957905
336 2946076829 2946072368 Bacteria 8999607
337 2947227278 2947224130 Bacteria 9938529
338 2947228126 2947224130 Bacteria 9938529
339 2954005951 2954002825 Bacteria 9173742
340 2954385086 2954380949 Bacteria 10050426
341 2954677907 2954673503 Bacteria 9685905
342 2954686249 2954682443 Bacteria 9862841
343 2954695905 2954691527 Bacteria 10720516
344 2954711096 2954701450 Bacteria 10834262
345 2954715310 2954711539 Bacteria 10867210
346 2954725251 2954721474 Bacteria 10456478
347 2954736565 2954731030 Bacteria 10243860
348 2954744185 2954740390 Bacteria 10229294
349 2954755414 2954749733 Bacteria 10366972
350 2954763128 2954759201 Bacteria 9358192
351 2966602452 2966598605 Bacteria 7676064
352 2990045573 2990044586 Bacteria 6603797
353 2990063946 2990059506 Bacteria 9321252
354 2990089213 2990088156 Bacteria 6657676
355 2997454295 2997451912 Bacteria 8492419
356 2997600229 2997600082 Bacteria 9896405
357 3006425510 3006425503 Bacteria 6491253
358 3006493865 3006486233 Bacteria 8157040
359 3006500331 3006493962 Bacteria 8825450
360 8008485859 8008485437 Bacteria 7198341
361 8008566216 8008558824 Bacteria 10610750
362 8008578081 8008574985 Bacteria 7815457
363 8023629568 8023623736 Bacteria 8593882
364 8025415801 8025413630 Bacteria 7014048
365 8025524943 8025524527 Bacteria 7197316
366 8025538161 8025530807 Bacteria 8495698
367 8047897884 8047893842 Bacteria 11723082
368 8048133132 8048127548 Bacteria 11053136
369 8048361010 8048356638 Bacteria 11044339
370 8048374847 8048369669 Bacteria 11666822
371 8048383375 8048379754 Bacteria 11877923
372 8048409586 8048406513 Bacteria 8936924
373 8056833211 8056829672 Bacteria 9045328
374 Ga0081455_10165026
375 JGI24739J22299_10068190
376 JGI24738J21930_10006466
377 rootH1_10012336
378 rootL2_10108360
379 rootL2_10226675
380 rootH1_10069608
381 Ga0006562J51391_1042536
382 Ga0070668_100881517
383 Ga0070663_100381000
384 Ga0070681_10766817
385 Ga0068853_100037087
386 Ga0075363_100006677
387 Ga0075367_10005092
388 Ga0099826_10081941
389 Ga0105251_10010755
390 Ga0105244_10099400
391 Ga0105243_10068260
392 Ga0105248_10106596
393 Ga0105237_10814812
394 Ga0105246_10000799
395 Ga0157369_10048977
396 Ga0157375_11758934
397 Ga0157376_10531809
398 Ga0183367_1015
399 Ga0209758_1009589
400 Ga0207426_1008470
401 Ga0207426_1010477
402 Ga0207426_1012882
403 Ga0207696_1089073
404 Ga0207647_10031353
405 Ga0207709_10026231
406 Ga0207639_10040203
407 Ga0209371_1008434
408 Ga0268266_10756074
409 Ga0307517_10023005
410 Ga0307515_10001114
411 Ga0307515_10110201
412 Ga0268256_1008793
413 Ga0307511_10001531
414 Ga0307511_10059125
415 Ga0307511_10062284
416 Ga0307512_10004639
417 Ga0307512_10209523
418 Ga0307513_10007578
419 Ga0307509_10022053
420 Ga0307509_10024207
421 Ga0307508_10000756
422 Ga0307508_10018499
423 Ga0307514_10027767
424 Ga0307514_10249636
425 Ga0307514_10254574
426 Ga0307516_10019148
427 Ga0307516_10096772
428 Ga0307413_10307688
429 Ga0307518_10050528
430 Ga0307518_10089483
431 Ga0307518_10113560
432 Ga0307416_100015308
433 Ga0307416_100603745
434 Ga0307507_10014669
435 Ga0307507_10015162
436 Ga0307507_10022354
437 Ga0307507_10172530
438 Ga0307510_10011904
439 Ga0307510_10015345
440 Ga0307510_10060151
441 Ga0307510_10257899
442 Ga0395900_0211321
443 Ga0395898_0006911
444 Ga0395898_0018159
445 Ga0395898_0096234
446 Ga0395901_0119621
447 Ga0395901_0126049
448 Ga0439436_0000294
449 Ga0439436_0001249
450 Ga0451800_0761060
451 Ga0451802_1471088
452 Ga0451853_0440186
453 Ga0451853_3342380
454 Ga0451853_3352522
455 Ga0439442_007499
456 Ga0439432_015909
457 Ga0439449_0003614
458 Ga0439455_0000270
459 Ga0439457_000100
460 Ga0439457_001473
461 Ga0450894_000116
462 Ga0450898_000184
463 Ga0450902_022809
464 Ga0450903_010483
465 Ga0439458_0003284
466 Ga0450908_003525
467 Ga0466972_0027777
468 Ga0466965_0037193
469 Ga0466965_0104633
470 Ga0466963_0005571
471 Ga0466970_0002075
472 Ga0466967_0024910
473 Ga0495617_058722
474 Ga0495627_018884
475 Ga0495592_0010649
476 Ga0495592_0022154
477 Ga0495592_0024209
478 Ga0495603_0000673
479 Ga0495603_0003326
480 Ga0495603_0014417
481 Ga0495603_0015529
482 Ga0495603_0133472
483 Ga0495629_0000747
484 Ga0495629_0017556
485 Ga0495629_0053035
486 Ga0495629_0089938
487 Ga0495629_0134654
488 Ga0495629_0315811
489 Ga0495638_0055986
490 Ga0495638_0081598
491 Ga0495651_0001084
492 Ga0495651_0002976
493 Ga0495653_0104654
494 Ga0495653_0166705
495 Ga0495580_0162359
496 Ga0495582_0030672
497 Ga0495582_0164915
498 Ga0495605_0003483
499 Ga0495639_0071934
500 Ga0495662_0000188
501 Ga0495662_0001092
502 Ga0495662_0197639
503 Ga0495662_0215061
504 Ga0495664_0002737
505 Ga0495664_0007932
506 Ga0495664_0244392
507 Ga0495584_0039671
508 Ga0495585_0051378
509 Ga0495585_0228095
510 Ga0495594_0004897
511 Ga0495594_0024059
512 Ga0495594_0039954
513 Ga0495594_0358493
514 Ga0495596_0026303
515 Ga0495607_0010141
516 Ga0495607_0116125
517 Ga0495583_0077019
518 Ga0495606_0103557
519 Ga0495616_0044517
520 Ga0495618_0013512
521 Ga0495618_0019961
522 Ga0495620_0010806
523 Ga0495628_0050485
524 Ga0495628_0057447
525 Ga0495630_0094354
526 Ga0495643_0007830
527 Ga0495648_0023389
528 Ga0495666_0011429
529 Ga0495642_0005749
530 Ga0495652_0013075
531 Ga0495652_0085315
532 Ga0495652_0745916
533 Ga0495640_0157210
534 Ga0495586_0040660
535 Ga0495587_0039731
536 Ga0495587_0088765
537 Ga0495645_0016133
538 Ga0495622_0009364
539 Ga0495622_0072480
540 Ga0495622_0112781
541 Ga0495633_0088204
542 Ga0495634_0006610
543 Ga0495634_0197149
544 Ga0495611_0017497
545 Ga0495625_0038233
546 Ga0495625_0044391
547 Ga0495625_0177304
548 Ga0495635_0001573
549 Ga0495635_0011488
550 Ga0495635_0012648
551 Ga0495661_0073938
552 Ga0495588_0004690
553 Ga0495588_0028944
554 Ga0495599_0268317
555 Ga0495599_0278153
556 Ga0495623_0224491
557 Ga0495646_0000131
558 Ga0495646_0001046
559 Ga0495646_0249849
560 Ga0495658_0036474
561 Ga0495658_0058927
562 Ga0495613_0000387
563 Ga0495613_0003712
564 Ga0495613_0012734
565 Ga0495613_0079070
566 Ga0495613_0121725
567 Ga0495670_0027766
568 Ga0495670_0389691
569 Ga0495671_0011485
570 Ga0495649_0058768
571 Ga0495649_0077502
572 Ga0495589_0019601
573 Ga0495589_0030979
574 Ga0495589_0034659
575 Ga0495589_0047116
576 Ga0495589_0088782
577 Ga0495600_0004740
578 Ga0495600_0048627
579 Ga0495660_0235568
580 Ga0495581_0006128
581 Ga0495581_0006810
582 Ga0495581_0028930
583 Ga0495604_0000410
584 Ga0495604_0000991
585 Ga0495604_0051888
586 Ga0495636_0000569
587 Ga0495636_0002326
588 Ga0495636_0005046
589 Ga0495636_0053071
590 Ga0495636_0070000
591 Ga0495636_0275150
592 Ga0495672_0080979
593 Ga0495676_0003902
594 Ga0495676_0005214
595 Ga0495676_0007823
596 Ga0495676_0056077
597 Ga0495676_0064905
598 Ga0495676_0067187
599 Ga0495680_0009376
600 Ga0495687_001086
601 Ga0495687_002593
602 Ga0495675_0106175
603 Ga0495685_006978
604 Ga0495685_008660
605 Ga0495685_008672
606 Ga0495685_083221
607 Ga0495673_0061411
608 Ga0495681_0001161
609 Ga0495684_0123099
610 Ga0495684_0141821
611 Ga0495686_0015503
612 Ga0495686_0232757
613 Ga0495593_0000306
614 Ga0495593_0004084
615 Ga0495602_0006179
616 Ga0495602_0039704
617 Ga0495602_0131555
618 Ga0495614_0000427
619 Ga0495614_0001434
620 Ga0495614_0021546
621 Ga0495614_0024115
622 Ga0495626_0007341
623 Ga0496108_0039774
624 Ga0496109_0011912
625 Ga0496113_0091932
626 Ga0495678_044378
627 Ga0501031_0356271
628 Ga0501032_0394478
629 Ga0501034_0322517
630 Ga0501037_0209964
631 Ga0501043_0258362
632 Ga0501047_0056820
633 Ga0501047_0257096
634 Ga0501070_0138840
635 Ga0501070_0818756
636 Ga0501074_0419614
637 Ga0501235_055308
638 Ga0501080_0021540
639 Ga0501035_0085874
640 Ga0501044_0019102
641 Ga0501044_0143584
642 nmdc:mga06z11_1256_c1
643 Ga0495601_0126758
644 Ga0495619_0034847
645 Ga0495619_0106323
646 Ga0500583_0163107
647 Ga0500640_009671
648 Ga0500650_0165471
649 Ga0500560_000641
650 Ga0500614_039860
651 Ga0500600_0111328
652 Ga0500600_0197996
653 Ga0500633_0083009
654 2547411622
655 2554257049
656 2585298054
657 2585305160
658 2585318332
659 2616701495
660 2616903638
661 2643763471
662 2643899724
663 2643947618
664 2644266153
665 2644390201
666 2644403692
667 2644435310
668 2644437572
669 2644463661
670 2644627969
671 2768642059
672 2784589388
673 2785342189
674 2785370466
675 2786671622
676 2793977819
677 2804845898
678 2804849620
679 2808843027
680 2808921371
681 2809233050
682 2811845374
683 2812357100
684 2812479753
685 2819698253
686 2852640038
687 2862179472
688 2862286653
689 2862294600
690 2862387932
691 2862510243
692 2862578462
693 2862706285
694 2863411873
695 2867348552
696 2867372934
697 2867435687
698 2867477433
699 2868095205
700 2873154970
701 2875394695
702 2877680155
703 2912718740
704 2912761846
705 2918504633
706 2919471443
707 2946049941
708 2946068782
709 2946076829
710 2947227278
711 2947228126
712 2954005951
713 2954385086
714 2954677907
715 2954686249
716 2954695905
717 2954711096
718 2954715310
719 2954725251
720 2954736565
721 2954744185
722 2954755414
723 2954763128
724 2966602452
725 2990045573
726 2990063946
727 2990089213
728 2997454295
729 2997600229
730 3006425510
731 3006493865
732 3006500331
733 8008485859
734 8008566216
735 8008578081
736 8023629568
737 8025415801
738 8025524943
739 8025538161
740 8047897884
741 8048133132
742 8048361010
743 8048374847
744 8048383375
745 8048409586
746 8056833211

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03551

PadR

Transcriptional regulator PadR-like family

8

86

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
5dym-assembly1.cif.gz_A-2 crystal structure of a padr family transcription regulator from hypervirulent clostridium difficile r20291 - cdpadr_0991 to 1.89 angstrom resolution 0.8085 4 90
3hhh-assembly1.cif.gz_B crystal structure of transcriptional regulator, a member of padr family, from enterococcus faecalis v583 0.793 5 90
6abq-assembly1.cif.gz_A crystal structure of transcription factor from listeria monocytogenes 0.7828 2 90
4esb-assembly1.cif.gz_A-2 crystal structure of padr-like transcriptional regulator (bc4206) from bacillus cereus strain atcc 14579 0.7762 3 90
5f7q-assembly1.cif.gz_J rok repressor lmo0178 from listeria monocytogenes bound to operator 0.74 5 80
ID Description Score Start End Superfamily
af_Q2FUS4_1_110_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8315 5 90 1.10.10.10
5x11A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8311 5 88 1.10.10.10
af_P71704_1_89_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8183 4 88 1.10.10.10
5dymA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8084 4 90 1.10.10.10
af_Q58187_3_87_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8069 5 79 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A1R1SJU9-F1-model_v4 Transcriptional regulator 0.9232 1 188
AF-A0A6G2UFU6-F1-model_v4 PadR family transcriptional regulator 0.8894 1 125
AF-W7SGH8-F1-model_v4 Transcriptional regulator 0.8881 1 189
AF-A0A4Q9HLF9-F1-model_v4 PadR family transcriptional regulator 0.8868 1 161
AF-A0A4R2QU39-F1-model_v4 DNA-binding PadR family transcriptional regulator 0.8861 1 184 GO:0003677

Map