F422429

General Info

Members Datasets Scaffolds Average Seq Length
361 233 723 332

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2912715099|2912716953
Length 370
Sequence TRMRRAAVAIAAGAMAVSLAACGSAEEAGGDTDATGSAAAKGDNIKIGLLLPENKTARYEKFDRPLIEKKIKELTNNKATVEYNNARQDANLQAQQVDTMITNKVDVLILDAVDAKAIKNSVQKAVDAGIKVVAYDRLAEGPISAYTSFDNEEVGRTQGEALLKALGAKAKDSQIVMMNGSVTDPNAAQFKKGAHSVLDGKVKIGREFDTKEWSPDNANANMEAAITALGKDKIAGVYSANDGMAGGIITALKAAGIADIPVTGQDAELAAVQRIITDQQYMSVYKSYPQEAEVAAEMAVALAKGEDLGSIAKDKVSSGSATDIPSVLVPVVSLTKDNINDTVIKDGIYTADEICAGNYKSACDKLGIGG

Samples

Sample ID Description Type Environment
1 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
4 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
5 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
6 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
7 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
8 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
9 3300003579 Grassland soil microbial communities from Hopland, California, USA - Sample H4_Rhizo_45 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
10 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
11 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
12 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
13 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
14 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
15 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
16 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
17 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
18 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
19 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
20 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
21 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
22 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
23 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
24 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
26 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
27 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
28 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
29 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
30 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
31 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
32 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
33 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
34 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
35 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
36 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
37 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
38 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
39 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
40 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
41 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
42 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
43 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
44 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
45 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
46 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
47 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
48 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
49 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
50 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
51 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
52 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
53 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
54 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
55 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
56 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
57 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
58 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
59 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
60 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
61 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
62 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
63 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
64 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
65 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
66 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
67 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
68 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
69 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
70 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
71 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
72 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
73 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
74 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
75 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
76 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
77 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
78 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
79 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
80 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
81 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
82 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
83 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
84 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
85 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
86 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
87 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
88 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
89 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
90 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
91 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
92 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
93 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
94 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
95 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
96 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
97 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
98 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
99 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
100 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
101 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
102 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
103 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
104 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
105 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
106 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
107 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
108 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
109 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
110 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
111 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
112 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
113 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
114 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
115 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
116 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
117 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
118 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
119 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
120 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
121 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
122 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
123 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
124 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
125 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
126 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
127 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
128 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
129 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
130 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
131 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
132 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
133 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
134 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
135 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
136 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
137 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
138 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
139 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
140 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
141 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
142 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
143 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
144 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
145 3300049161 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
146 3300049532 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_B_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
147 3300049535 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
148 3300049539 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_B_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
149 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
150 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
151 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
152 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
153 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
154 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
155 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
156 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
157 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
158 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
159 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
160 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
161 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
162 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
163 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
164 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
165 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
166 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
167 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
168 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
169 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
170 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
171 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
172 3300053099 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 endosphere Metagenome Endosphere
173 3300053101 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 endosphere Metagenome Endosphere
174 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
175 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
176 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
177 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
178 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
179 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
180 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
181 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
182 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
183 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
184 3300053739 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere Metagenome Endosphere
185 3300059492 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 14R_AD_T1_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
186 3300059604 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 63R_AD_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
187 3300059605 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 71R_SD_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
188 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
189 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
190 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
191 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
192 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
193 2643221548 Streptomyces sp. Root55 Isolate Unclassified
194 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
195 2643221714 Streptomyces sp. Root264 Isolate Unclassified
196 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
197 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
198 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
199 2802429296 Streptomyces sampsonii KJ40 Isolate Rhizosphere
200 2808606448 Streptomyces sp. 193411 Isolate Unclassified
201 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
202 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
203 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
204 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
205 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
206 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
207 2862574272 Streptomyces sp. AcE210 Isolate Nodule
208 2867428634 Streptomyces sp. RP5T Isolate Unclassified
209 2867475112 Streptomyces sp. TM32 Isolate Unclassified
210 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
211 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
212 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
213 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
214 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
215 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
216 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
217 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
218 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
219 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
220 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
221 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
222 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
223 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
224 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
225 2995463766 Streptacidiphilus fuscans NEAU-YB345 Isolate Unclassified
226 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
227 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified
228 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
229 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
230 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
231 8025413630 Streptomyces sp. CAI-17 Isolate Rhizosphere
232 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
233 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 83.38
Metatranscriptomes 3.6
Isolates 13.02

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.14
Nodule 0.28
Rhizoplane 0.55
Rhizosphere 79.5
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10026778 3300001989 Bacteria 2020
2 JGI24737J22298_10014077 3300001990 Bacteria 2598
3 JGI24735J21928_10006131 3300002067 Bacteria 3970
4 JGI24738J21930_10017724 3300002075 Bacteria 1495
5 rootH1_10002705 3300003316 Bacteria 7715
6 rootL2_10043386 3300003322 Bacteria 5704
7 rootH1_10003554 3300003316 Bacteria 5659
8 rootH1_10003554 3300003323 Bacteria 3368
9 rootH1_10003555 3300003323 Bacteria 7221
10 JGI25160J50197_1017280 3300003354 Bacteria 2291
11 Ga0007429J51699_1024518 3300003579 Bacteria 1763
12 Ga0068853_100075202 3300005539 Bacteria 2948
13 Ga0081455_10057766 3300005937 Bacteria 3287
14 Ga0075368_10001662 3300006042 Bacteria 7140
15 Ga0075363_100011234 3300006048 Bacteria 4282
16 Ga0075363_100048268 3300006048 Bacteria 2263
17 Ga0075367_10000057 3300006178 Bacteria 26977
18 Ga0075370_10072438 3300006353 Bacteria 1972
19 Ga0105243_10128691 3300009148 Bacteria 2145
20 Ga0182008_10001282 3300014497 Bacteria 17245
21 Ga0182007_10000145 3300015262 Bacteria 47705
22 Ga0182005_1040258 3300015265 Bacteria 1271
23 Ga0183367_1001 3300015688 Bacteria 1225545
24 Ga0224712_10020624 3300022467 Bacteria 2241
25 Ga0209758_1010840 3300025297 Bacteria 5382
26 Ga0207426_1001060 3300025302 Bacteria 26047
27 Ga0207426_1008260 3300025302 Bacteria 4231
28 Ga0207639_10059162 3300026041 Bacteria 2951
29 Ga0209371_1005705 3300027312 Bacteria 4857
30 Ga0209813_10004420 3300027866 Bacteria 3356
31 Ga0307517_10001972 3300028786 Bacteria 33450
32 Ga0307517_10047052 3300028786 Bacteria 4482
33 Ga0307515_10001777 3300028794 Bacteria 48014
34 Ga0268256_1005627 3300030500 Bacteria 4867
35 Ga0307511_10000713 3300030521 Bacteria 35403
36 Ga0307512_10001091 3300030522 Bacteria 39432
37 Ga0307509_10103444 3300031507 Bacteria 2875
38 Ga0307508_10003384 3300031616 Bacteria 16161
39 Ga0307508_10005554 3300031616 Bacteria 11981
40 Ga0307508_10008824 3300031616 Bacteria 9301
41 Ga0307508_10146541 3300031616 Bacteria 1965
42 Ga0307514_10071679 3300031649 Bacteria 2597
43 Ga0307516_10011245 3300031730 Bacteria 9755
44 Ga0307516_10039444 3300031730 Bacteria 4707
45 Ga0307516_10258182 3300031730 Bacteria 1434
46 Ga0307409_100294381 3300031995 Bacteria 1507
47 Ga0307416_100060266 3300032002 Bacteria 3090
48 Ga0307507_10060003 3300033179 Bacteria 3555
49 Ga0307507_10149861 3300033179 Bacteria 1759
50 Ga0307510_10019984 3300033180 Bacteria 7843
51 Ga0395900_0056498 3300037418 Bacteria 4040
52 Ga0395898_0001533 3300037466 Bacteria 31819
53 Ga0395898_0009811 3300037466 Bacteria 10033
54 Ga0395901_0173605 3300038443 Bacteria 2261
55 Ga0439436_0006834 3300041404 Bacteria 3504
56 Ga0439436_0007860 3300041404 Bacteria 3276
57 Ga0451802_1196095 3300041460 Bacteria 1917
58 Ga0439433_0029728 3300041999 Bacteria 1247
59 Ga0439442_007570 3300042002 Bacteria 2186
60 Ga0439448_0000382 3300042005 Bacteria 10066
61 Ga0439449_0007205 3300042007 Bacteria 4231
62 Ga0439449_0025830 3300042007 Bacteria 2193
63 Ga0439450_011715 3300042008 Bacteria 1724
64 Ga0439455_0009194 3300042012 Bacteria 2137
65 Ga0439457_003187 3300042014 Bacteria 4519
66 Ga0439462_0006503 3300042015 Bacteria 2906
67 Ga0450903_000047 3300042138 Bacteria 23970
68 Ga0466969_0000546 3300044656 Bacteria 20630
69 Ga0466969_0011774 3300044656 Bacteria 4626
70 Ga0466969_0011964 3300044656 Bacteria 4589
71 Ga0466972_0003404 3300044658 Bacteria 7886
72 Ga0466972_0008225 3300044658 Bacteria 5229
73 Ga0466965_0010299 3300044683 Bacteria 4357
74 Ga0466965_0058849 3300044683 Bacteria 1917
75 Ga0466965_0118773 3300044683 Bacteria 1364
76 Ga0466966_0004015 3300044684 Bacteria 9716
77 Ga0466966_0013928 3300044684 Bacteria 5324
78 Ga0466966_0023881 3300044684 Bacteria 4001
79 Ga0466966_0034077 3300044684 Bacteria 3295
80 Ga0466961_0008808 3300044693 Bacteria 6436
81 Ga0466961_0010876 3300044693 Bacteria 5813
82 Ga0466961_0013344 3300044693 Bacteria 5259
83 Ga0466961_0025306 3300044693 Bacteria 3817
84 Ga0466961_0045573 3300044693 Bacteria 2806
85 Ga0466961_0051100 3300044693 Bacteria 2640
86 Ga0466963_0006627 3300044694 Bacteria 6871
87 Ga0466963_0119558 3300044694 Bacteria 1812
88 Ga0466964_0007326 3300044706 Bacteria 4125
89 Ga0466971_0000793 3300044719 Bacteria 12755
90 Ga0466971_0023457 3300044719 Bacteria 2751
91 Ga0466971_0025398 3300044719 Bacteria 2645
92 Ga0466970_0010928 3300044765 Bacteria 4617
93 Ga0466957_0004506 3300044842 Bacteria 7774
94 Ga0466960_0001437 3300044901 Bacteria 8687
95 Ga0466959_0003244 3300045049 Bacteria 10585
96 Ga0466959_0006993 3300045049 Bacteria 7884
97 Ga0466959_0007090 3300045049 Bacteria 7840
98 Ga0466959_0009544 3300045049 Bacteria 6902
99 Ga0466958_0000209 3300045836 Bacteria 21869
100 Ga0466967_0028853 3300045976 Bacteria 4638
101 Ga0466967_0280931 3300045976 Bacteria 1597
102 Ga0495617_036695 3300046452 Bacteria 1642
103 Ga0495592_0015954 3300046454 Bacteria 5698
104 Ga0495603_0002218 3300046455 Bacteria 11414
105 Ga0495603_0006133 3300046455 Bacteria 7189
106 Ga0495603_0016819 3300046455 Bacteria 4425
107 Ga0495629_0021887 3300046459 Bacteria 4561
108 Ga0495629_0022114 3300046459 Bacteria 4534
109 Ga0495629_0035701 3300046459 Bacteria 3512
110 Ga0495629_0195861 3300046459 Bacteria 1397
111 Ga0495629_0265752 3300046459 Bacteria 1179
112 Ga0495638_0031301 3300046460 Bacteria 3420
113 Ga0495638_0059237 3300046460 Bacteria 2372
114 Ga0495651_0005684 3300046462 Bacteria 9505
115 Ga0495651_0008829 3300046462 Bacteria 7732
116 Ga0495651_0011772 3300046462 Bacteria 6722
117 Ga0495651_0041412 3300046462 Bacteria 3578
118 Ga0495653_0001709 3300046463 Bacteria 17284
119 Ga0495580_0028480 3300046472 Bacteria 4060
120 Ga0495582_0011532 3300046473 Bacteria 4871
121 Ga0495582_0016142 3300046473 Bacteria 4092
122 Ga0495605_0004697 3300046474 Bacteria 7983
123 Ga0495662_0000307 3300046476 Bacteria 21295
124 Ga0495662_0006059 3300046476 Bacteria 6043
125 Ga0495662_0016144 3300046476 Bacteria 3620
126 Ga0495664_0000481 3300046477 Bacteria 19809
127 Ga0495664_0003005 3300046477 Bacteria 9121
128 Ga0495664_0090510 3300046477 Bacteria 1839
129 Ga0495585_0031154 3300046492 Bacteria 3030
130 Ga0495585_0039469 3300046492 Bacteria 2653
131 Ga0495594_0024214 3300046499 Bacteria 3258
132 Ga0495594_0080516 3300046499 Bacteria 1818
133 Ga0495607_0030819 3300046501 Bacteria 3288
134 Ga0495607_0058821 3300046501 Bacteria 2195
135 Ga0495607_0145933 3300046501 Bacteria 1216
136 Ga0495583_0038602 3300046506 Bacteria 2255
137 Ga0495606_0013247 3300046507 Bacteria 6538
138 Ga0495608_0041279 3300046511 Bacteria 3088
139 Ga0495610_0018961 3300046512 Bacteria 3865
140 Ga0495616_0003474 3300046513 Bacteria 10080
141 Ga0495618_0003002 3300046514 Bacteria 10661
142 Ga0495628_0006526 3300046516 Bacteria 10182
143 Ga0495628_0035078 3300046516 Bacteria 4033
144 Ga0495628_0045361 3300046516 Bacteria 3496
145 Ga0495628_0158075 3300046516 Bacteria 1723
146 Ga0495630_0098851 3300046517 Bacteria 2207
147 Ga0495631_0043276 3300046518 Bacteria 1987
148 Ga0495637_0047483 3300046520 Bacteria 1812
149 Ga0495643_0001317 3300046522 Bacteria 23516
150 Ga0495643_0003803 3300046522 Bacteria 10908
151 Ga0495666_0003258 3300046526 Bacteria 8187
152 Ga0495666_0015581 3300046526 Bacteria 3784
153 Ga0495652_0000161 3300046529 Bacteria 76355
154 Ga0495652_0068623 3300046529 Bacteria 2969
155 Ga0495654_0004642 3300046530 Bacteria 8106
156 Ga0495665_0014122 3300046531 Bacteria 4311
157 Ga0495640_0001037 3300046533 Bacteria 21557
158 Ga0495640_0042114 3300046533 Bacteria 3188
159 Ga0495640_0075111 3300046533 Bacteria 2257
160 Ga0495586_0019878 3300046535 Bacteria 3577
161 Ga0495586_0081097 3300046535 Bacteria 1783
162 Ga0495587_0009976 3300046536 Bacteria 6064
163 Ga0495609_0006199 3300046538 Bacteria 6149
164 Ga0495645_0029020 3300046543 Bacteria 4020
165 Ga0495645_0046178 3300046543 Bacteria 3175
166 Ga0495645_0263319 3300046543 Bacteria 1140
167 Ga0495622_0003000 3300046557 Bacteria 8009
168 Ga0495622_0046129 3300046557 Bacteria 2025
169 Ga0495633_0004139 3300046558 Bacteria 9329
170 Ga0495667_0010894 3300046559 Bacteria 6147
171 Ga0495668_0017022 3300046616 Bacteria 4221
172 Ga0495634_0001379 3300046642 Bacteria 21914
173 Ga0495611_0033006 3300046648 Bacteria 2283
174 Ga0495611_0082771 3300046648 Bacteria 1477
175 Ga0495625_0007044 3300046660 Bacteria 9887
176 Ga0495625_0096860 3300046660 Bacteria 2031
177 Ga0495635_0000257 3300046663 Bacteria 34035
178 Ga0495635_0041993 3300046663 Bacteria 3159
179 Ga0495635_0055165 3300046663 Bacteria 2737
180 Ga0495661_0034565 3300046665 Bacteria 3179
181 Ga0495661_0086649 3300046665 Bacteria 1792
182 Ga0495588_0001087 3300046674 Bacteria 11762
183 Ga0495588_0066058 3300046674 Bacteria 1877
184 Ga0495588_0142893 3300046674 Bacteria 1264
185 Ga0495657_0001962 3300046675 Bacteria 17531
186 Ga0495657_0002211 3300046675 Bacteria 16475
187 Ga0495657_0020147 3300046675 Bacteria 4798
188 Ga0495657_0023331 3300046675 Bacteria 4421
189 Ga0495599_0020202 3300046678 Bacteria 4149
190 Ga0495623_0085017 3300046679 Bacteria 1951
191 Ga0495646_0006817 3300046680 Bacteria 7248
192 Ga0495646_0012162 3300046680 Bacteria 5472
193 Ga0495658_0037487 3300046683 Bacteria 2680
194 Ga0495658_0076679 3300046683 Bacteria 1954
195 Ga0495613_0005799 3300046689 Bacteria 9243
196 Ga0495613_0008700 3300046689 Bacteria 7527
197 Ga0495613_0014204 3300046689 Bacteria 5907
198 Ga0495613_0192581 3300046689 Bacteria 1440
199 Ga0495624_0072489 3300046690 Bacteria 2142
200 Ga0495624_0164346 3300046690 Bacteria 1355
201 Ga0495670_0103906 3300046691 Bacteria 1465
202 Ga0495671_0077370 3300046692 Bacteria 1631
203 Ga0495671_0080275 3300046692 Bacteria 1598
204 Ga0495589_0015896 3300046794 Bacteria 3869
205 Ga0495600_0029241 3300046809 Bacteria 3567
206 Ga0495600_0038323 3300046809 Bacteria 3118
207 Ga0495600_0228250 3300046809 Bacteria 1189
208 Ga0495660_0005812 3300046810 Bacteria 7364
209 Ga0495660_0043937 3300046810 Bacteria 2460
210 Ga0495581_0004908 3300047315 Bacteria 7735
211 Ga0495581_0023107 3300047315 Bacteria 3603
212 Ga0495581_0042265 3300047315 Bacteria 2638
213 Ga0495604_0002611 3300047317 Bacteria 14450
214 Ga0495604_0003371 3300047317 Bacteria 12743
215 Ga0495636_0002688 3300047318 Bacteria 6862
216 Ga0495636_0013954 3300047318 Bacteria 3193
217 Ga0495636_0026282 3300047318 Bacteria 2367
218 Ga0495674_0008781 3300047319 Bacteria 9614
219 Ga0495672_0061588 3300047320 Bacteria 2162
220 Ga0495676_0005471 3300047321 Bacteria 11643
221 Ga0495676_0045931 3300047321 Bacteria 3550
222 Ga0495680_0010396 3300047322 Bacteria 8305
223 Ga0495683_0022610 3300047323 Bacteria 3233
224 Ga0495683_0029373 3300047323 Bacteria 2810
225 Ga0495687_001850 3300047443 Bacteria 18496
226 Ga0495675_0050277 3300047444 Bacteria 2649
227 Ga0495675_0052610 3300047444 Bacteria 2585
228 Ga0495675_0087953 3300047444 Bacteria 1952
229 Ga0495677_0005494 3300047445 Bacteria 4807
230 Ga0495677_0044904 3300047445 Bacteria 1620
231 Ga0495685_000101 3300047447 Bacteria 31356
232 Ga0495685_001518 3300047447 Bacteria 7113
233 Ga0495685_010638 3300047447 Bacteria 3089
234 Ga0495685_031003 3300047447 Bacteria 1838
235 Ga0495681_0000732 3300047470 Bacteria 25229
236 Ga0495681_0002016 3300047470 Bacteria 14834
237 Ga0495684_0089156 3300047471 Bacteria 2337
238 Ga0495686_0041213 3300047472 Bacteria 2940
239 Ga0495686_0187440 3300047472 Bacteria 1194
240 Ga0495593_0006585 3300047673 Bacteria 6797
241 Ga0495593_0010546 3300047673 Bacteria 5330
242 Ga0495602_0031951 3300048088 Bacteria 4965
243 Ga0495602_0140069 3300048088 Bacteria 1915
244 Ga0495614_0011462 3300048089 Bacteria 3901
245 Ga0495614_0071002 3300048089 Bacteria 1501
246 Ga0495626_0008146 3300048091 Bacteria 5775
247 Ga0496113_0239598 3300048916 Bacteria 1447
248 Ga0501305_008442 3300049161 Bacteria 1332
249 Ga0501316_001235 3300049532 Bacteria 2116
250 Ga0501316_005765 3300049532 Bacteria 1296
251 Ga0501319_001670 3300049535 Bacteria 1319
252 Ga0501323_000296 3300049539 Bacteria 3457
253 Ga0501323_004132 3300049539 Bacteria 1519
254 Ga0501031_0182818 3300049568 Bacteria 1369
255 Ga0501032_0025987 3300049569 Bacteria 4032
256 Ga0501033_0003558 3300049570 Bacteria 12739
257 Ga0501033_0010420 3300049570 Bacteria 7129
258 Ga0501033_0248536 3300049570 Bacteria 1261
259 Ga0501034_0009946 3300049571 Bacteria 9939
260 Ga0501034_0010613 3300049571 Bacteria 9586
261 Ga0501034_0015789 3300049571 Bacteria 7756
262 Ga0501036_0005139 3300049572 Bacteria 10575
263 Ga0501038_0000488 3300049574 Bacteria 34890
264 Ga0501038_0045938 3300049574 Bacteria 3788
265 Ga0501039_0009087 3300049575 Bacteria 7576
266 Ga0501039_0063509 3300049575 Bacteria 2861
267 Ga0501039_0190749 3300049575 Bacteria 1612
268 Ga0501043_0049385 3300049579 Bacteria 3307
269 Ga0501043_0104260 3300049579 Bacteria 2228
270 Ga0501047_0153915 3300049581 Bacteria 2174
271 Ga0501047_0265083 3300049581 Bacteria 1565
272 Ga0501070_0009670 3300049586 Bacteria 8153
273 Ga0501070_0040772 3300049586 Bacteria 3871
274 Ga0501070_0331964 3300049586 Bacteria 1236
275 Ga0501074_0005292 3300049590 Bacteria 9292
276 Ga0501080_0227226 3300049742 Bacteria 1706
277 Ga0501035_0003635 3300049822 Bacteria 14707
278 Ga0501035_0024794 3300049822 Bacteria 5499
279 Ga0501035_0102779 3300049822 Bacteria 2507
280 Ga0501044_0006952 3300049823 Bacteria 12452
281 Ga0501044_0027341 3300049823 Bacteria 6029
282 Ga0501045_0046030 3300049824 Bacteria 3177
283 nmdc:mga03n38_50957_c1 3300050490 Bacteria 1847
284 nmdc:mga06z11_1174_c1 3300050494 Bacteria 9614
285 nmdc:mga07m45_36665_c1 3300050496 Bacteria 2732
286 Ga0495601_0006623 3300053077 Bacteria 6778
287 Ga0495619_0017592 3300053085 Bacteria 4528
288 Ga0500578_0004575 3300053086 Bacteria 9671
289 Ga0500578_0190330 3300053086 Bacteria 1260
290 Ga0500583_0044637 3300053092 Bacteria 2031
291 Ga0500640_002063 3300053095 Bacteria 6481
292 Ga0500654_017182 3300053099 Bacteria 4725
293 Ga0500553_055792 3300053101 Bacteria 1875
294 Ga0500560_002010 3300053107 Bacteria 3755
295 Ga0500560_066765 3300053107 Bacteria 1180
296 Ga0500628_005435 3300053129 Bacteria 2125
297 Ga0500652_000775 3300053131 Bacteria 10769
298 Ga0500658_0000621 3300053134 Bacteria 14703
299 Ga0500561_0000808 3300053137 Bacteria 4999
300 Ga0500573_0004116 3300053140 Bacteria 7611
301 Ga0500573_0034767 3300053140 Bacteria 2907
302 Ga0500600_0001327 3300053149 Bacteria 13024
303 Ga0500616_0002523 3300053153 Bacteria 15153
304 Ga0500616_0002826 3300053153 Bacteria 13961
305 Ga0500624_001805 3300053157 Bacteria 3112
306 Ga0500634_0001272 3300053161 Bacteria 9591
307 Ga0500587_000085 3300053739 Bacteria 8016
308 Ga0587073_0005882 3300059492 Bacteria 1856
309 Ga0587098_002816 3300059604 Bacteria 1507
310 Ga0587106_002438 3300059605 Bacteria 1826
311 Ga0587106_007230 3300059605 Bacteria 1341
312 Ga0587106_009557 3300059605 Bacteria 1236
313 Ga0466962_0001922 3300061719 Bacteria 9780
314 Ga0466962_0005057 3300061719 Bacteria 6344
315 Ga0466962_0016144 3300061719 Bacteria 3603
316 2912716953 2912715099 Bacteria 9460473
317 2547407430 2547132111 Bacteria 8013147
318 2585317493 2582581314 Bacteria 11452267
319 2616699164 2616644814 Bacteria 11555299
320 2643761773 2643221548 Bacteria 8053412
321 2644460800 2643221682 Bacteria 6743283
322 2644626637 2643221714 Bacteria 9015452
323 2784591158 2784132148 Bacteria 8627943
324 2785340558 2784746763 Bacteria 9783172
325 2786673278 2786546132 Bacteria 10419719
326 2804848613 2802429296 Bacteria 7227771
327 2809234735 2808606448 Bacteria 8656184
328 2812355302 2811994879 Bacteria 9313447
329 2812478047 2811994917 Bacteria 7761064
330 2819699597 2818991463 Bacteria 7948711
331 2852638789 2852635781 Bacteria 8251373
332 2862284022 2862281513 Bacteria 9621493
333 2862514040 2862507626 Bacteria 9425308
334 2862576860 2862574272 Bacteria 10567477
335 2867429257 2867428634 Bacteria 9590268
336 2867476681 2867475112 Bacteria 6909112
337 2875397349 2875391855 Bacteria 7600475
338 2912729513 2912723979 Bacteria 8557534
339 2918508239 2918501144 Bacteria 8668083
340 2946070590 2946064051 Bacteria 8957905
341 2946078326 2946072368 Bacteria 8999607
342 2954383392 2954380949 Bacteria 10050426
343 2954679581 2954673503 Bacteria 9685905
344 2954684574 2954682443 Bacteria 9862841
345 2954713708 2954711539 Bacteria 10867210
346 2954723671 2954721474 Bacteria 10456478
347 2954738162 2954731030 Bacteria 10243860
348 2954742574 2954740390 Bacteria 10229294
349 2954757020 2954749733 Bacteria 10366972
350 2954761538 2954759201 Bacteria 9358192
351 2966600171 2966598605 Bacteria 7676064
352 2995465102 2995463766 Bacteria 8577691
353 2995468111 2995463766 Bacteria 8577691
354 2997452071 2997451912 Bacteria 8492419
355 2997453833 2997451912 Bacteria 8492419
356 3003005574 3002998708 Bacteria 11715108
357 3006395986 3006393351 Bacteria 6615579
358 3006499592 3006493962 Bacteria 8825450
359 8023624689 8023623736 Bacteria 8593882
360 8025419119 8025413630 Bacteria 7014048
361 8054162273 8054160619 Bacteria 7783213
362 8056829920 8056829672 Bacteria 9045328
363 JGI24739J22299_10026778
364 JGI24737J22298_10014077
365 JGI24735J21928_10006131
366 JGI24738J21930_10017724
367 rootH1_10002705
368 rootL2_10043386
369 rootH1_10003554
370 rootH1_10003555
371 JGI25160J50197_1017280
372 Ga0007429J51699_1024518
373 Ga0068853_100075202
374 Ga0081455_10057766
375 Ga0075368_10001662
376 Ga0075363_100011234
377 Ga0075363_100048268
378 Ga0075367_10000057
379 Ga0075370_10072438
380 Ga0105243_10128691
381 Ga0182008_10001282
382 Ga0182007_10000145
383 Ga0182005_1040258
384 Ga0183367_1001
385 Ga0224712_10020624
386 Ga0209758_1010840
387 Ga0207426_1001060
388 Ga0207426_1008260
389 Ga0207639_10059162
390 Ga0209371_1005705
391 Ga0209813_10004420
392 Ga0307517_10001972
393 Ga0307517_10047052
394 Ga0307515_10001777
395 Ga0268256_1005627
396 Ga0307511_10000713
397 Ga0307512_10001091
398 Ga0307509_10103444
399 Ga0307508_10003384
400 Ga0307508_10005554
401 Ga0307508_10008824
402 Ga0307508_10146541
403 Ga0307514_10071679
404 Ga0307516_10011245
405 Ga0307516_10039444
406 Ga0307516_10258182
407 Ga0307409_100294381
408 Ga0307416_100060266
409 Ga0307507_10060003
410 Ga0307507_10149861
411 Ga0307510_10019984
412 Ga0395900_0056498
413 Ga0395898_0001533
414 Ga0395898_0009811
415 Ga0395901_0173605
416 Ga0439436_0006834
417 Ga0439436_0007860
418 Ga0451802_1196095
419 Ga0439433_0029728
420 Ga0439442_007570
421 Ga0439448_0000382
422 Ga0439449_0007205
423 Ga0439449_0025830
424 Ga0439450_011715
425 Ga0439455_0009194
426 Ga0439457_003187
427 Ga0439462_0006503
428 Ga0450903_000047
429 Ga0466969_0000546
430 Ga0466969_0011774
431 Ga0466969_0011964
432 Ga0466972_0003404
433 Ga0466972_0008225
434 Ga0466965_0010299
435 Ga0466965_0058849
436 Ga0466965_0118773
437 Ga0466966_0004015
438 Ga0466966_0013928
439 Ga0466966_0023881
440 Ga0466966_0034077
441 Ga0466961_0008808
442 Ga0466961_0010876
443 Ga0466961_0013344
444 Ga0466961_0025306
445 Ga0466961_0045573
446 Ga0466961_0051100
447 Ga0466963_0006627
448 Ga0466963_0119558
449 Ga0466964_0007326
450 Ga0466971_0000793
451 Ga0466971_0023457
452 Ga0466971_0025398
453 Ga0466970_0010928
454 Ga0466957_0004506
455 Ga0466960_0001437
456 Ga0466959_0003244
457 Ga0466959_0006993
458 Ga0466959_0007090
459 Ga0466959_0009544
460 Ga0466958_0000209
461 Ga0466967_0028853
462 Ga0466967_0280931
463 Ga0495617_036695
464 Ga0495592_0015954
465 Ga0495603_0002218
466 Ga0495603_0006133
467 Ga0495603_0016819
468 Ga0495629_0021887
469 Ga0495629_0022114
470 Ga0495629_0035701
471 Ga0495629_0195861
472 Ga0495629_0265752
473 Ga0495638_0031301
474 Ga0495638_0059237
475 Ga0495651_0005684
476 Ga0495651_0008829
477 Ga0495651_0011772
478 Ga0495651_0041412
479 Ga0495653_0001709
480 Ga0495580_0028480
481 Ga0495582_0011532
482 Ga0495582_0016142
483 Ga0495605_0004697
484 Ga0495662_0000307
485 Ga0495662_0006059
486 Ga0495662_0016144
487 Ga0495664_0000481
488 Ga0495664_0003005
489 Ga0495664_0090510
490 Ga0495585_0031154
491 Ga0495585_0039469
492 Ga0495594_0024214
493 Ga0495594_0080516
494 Ga0495607_0030819
495 Ga0495607_0058821
496 Ga0495607_0145933
497 Ga0495583_0038602
498 Ga0495606_0013247
499 Ga0495608_0041279
500 Ga0495610_0018961
501 Ga0495616_0003474
502 Ga0495618_0003002
503 Ga0495628_0006526
504 Ga0495628_0035078
505 Ga0495628_0045361
506 Ga0495628_0158075
507 Ga0495630_0098851
508 Ga0495631_0043276
509 Ga0495637_0047483
510 Ga0495643_0001317
511 Ga0495643_0003803
512 Ga0495666_0003258
513 Ga0495666_0015581
514 Ga0495652_0000161
515 Ga0495652_0068623
516 Ga0495654_0004642
517 Ga0495665_0014122
518 Ga0495640_0001037
519 Ga0495640_0042114
520 Ga0495640_0075111
521 Ga0495586_0019878
522 Ga0495586_0081097
523 Ga0495587_0009976
524 Ga0495609_0006199
525 Ga0495645_0029020
526 Ga0495645_0046178
527 Ga0495645_0263319
528 Ga0495622_0003000
529 Ga0495622_0046129
530 Ga0495633_0004139
531 Ga0495667_0010894
532 Ga0495668_0017022
533 Ga0495634_0001379
534 Ga0495611_0033006
535 Ga0495611_0082771
536 Ga0495625_0007044
537 Ga0495625_0096860
538 Ga0495635_0000257
539 Ga0495635_0041993
540 Ga0495635_0055165
541 Ga0495661_0034565
542 Ga0495661_0086649
543 Ga0495588_0001087
544 Ga0495588_0066058
545 Ga0495588_0142893
546 Ga0495657_0001962
547 Ga0495657_0002211
548 Ga0495657_0020147
549 Ga0495657_0023331
550 Ga0495599_0020202
551 Ga0495623_0085017
552 Ga0495646_0006817
553 Ga0495646_0012162
554 Ga0495658_0037487
555 Ga0495658_0076679
556 Ga0495613_0005799
557 Ga0495613_0008700
558 Ga0495613_0014204
559 Ga0495613_0192581
560 Ga0495624_0072489
561 Ga0495624_0164346
562 Ga0495670_0103906
563 Ga0495671_0077370
564 Ga0495671_0080275
565 Ga0495589_0015896
566 Ga0495600_0029241
567 Ga0495600_0038323
568 Ga0495600_0228250
569 Ga0495660_0005812
570 Ga0495660_0043937
571 Ga0495581_0004908
572 Ga0495581_0023107
573 Ga0495581_0042265
574 Ga0495604_0002611
575 Ga0495604_0003371
576 Ga0495636_0002688
577 Ga0495636_0013954
578 Ga0495636_0026282
579 Ga0495674_0008781
580 Ga0495672_0061588
581 Ga0495676_0005471
582 Ga0495676_0045931
583 Ga0495680_0010396
584 Ga0495683_0022610
585 Ga0495683_0029373
586 Ga0495687_001850
587 Ga0495675_0050277
588 Ga0495675_0052610
589 Ga0495675_0087953
590 Ga0495677_0005494
591 Ga0495677_0044904
592 Ga0495685_000101
593 Ga0495685_001518
594 Ga0495685_010638
595 Ga0495685_031003
596 Ga0495681_0000732
597 Ga0495681_0002016
598 Ga0495684_0089156
599 Ga0495686_0041213
600 Ga0495686_0187440
601 Ga0495593_0006585
602 Ga0495593_0010546
603 Ga0495602_0031951
604 Ga0495602_0140069
605 Ga0495614_0011462
606 Ga0495614_0071002
607 Ga0495626_0008146
608 Ga0496113_0239598
609 Ga0501305_008442
610 Ga0501316_001235
611 Ga0501316_005765
612 Ga0501319_001670
613 Ga0501323_000296
614 Ga0501323_004132
615 Ga0501031_0182818
616 Ga0501032_0025987
617 Ga0501033_0003558
618 Ga0501033_0010420
619 Ga0501033_0248536
620 Ga0501034_0009946
621 Ga0501034_0010613
622 Ga0501034_0015789
623 Ga0501036_0005139
624 Ga0501038_0000488
625 Ga0501038_0045938
626 Ga0501039_0009087
627 Ga0501039_0063509
628 Ga0501039_0190749
629 Ga0501043_0049385
630 Ga0501043_0104260
631 Ga0501047_0153915
632 Ga0501047_0265083
633 Ga0501070_0009670
634 Ga0501070_0040772
635 Ga0501070_0331964
636 Ga0501074_0005292
637 Ga0501080_0227226
638 Ga0501035_0003635
639 Ga0501035_0024794
640 Ga0501035_0102779
641 Ga0501044_0006952
642 Ga0501044_0027341
643 Ga0501045_0046030
644 nmdc:mga03n38_50957_c1
645 nmdc:mga06z11_1174_c1
646 nmdc:mga07m45_36665_c1
647 Ga0495601_0006623
648 Ga0495619_0017592
649 Ga0500578_0004575
650 Ga0500578_0190330
651 Ga0500583_0044637
652 Ga0500640_002063
653 Ga0500654_017182
654 Ga0500553_055792
655 Ga0500560_002010
656 Ga0500560_066765
657 Ga0500628_005435
658 Ga0500652_000775
659 Ga0500658_0000621
660 Ga0500561_0000808
661 Ga0500573_0004116
662 Ga0500573_0034767
663 Ga0500600_0001327
664 Ga0500616_0002523
665 Ga0500616_0002826
666 Ga0500624_001805
667 Ga0500634_0001272
668 Ga0500587_000085
669 Ga0587073_0005882
670 Ga0587098_002816
671 Ga0587106_002438
672 Ga0587106_007230
673 Ga0587106_009557
674 Ga0466962_0001922
675 Ga0466962_0005057
676 Ga0466962_0016144
677 2912716953
678 2547407430
679 2585317493
680 2616699164
681 2643761773
682 2644460800
683 2644626637
684 2784591158
685 2785340558
686 2786673278
687 2804848613
688 2809234735
689 2812355302
690 2812478047
691 2819699597
692 2852638789
693 2862284022
694 2862514040
695 2862576860
696 2867429257
697 2867476681
698 2875397349
699 2912729513
700 2918508239
701 2946070590
702 2946078326
703 2954383392
704 2954679581
705 2954684574
706 2954713708
707 2954723671
708 2954738162
709 2954742574
710 2954757020
711 2954761538
712 2966600171
713 2995465102
714 2995468111
715 2997452071
716 2997453833
717 3003005574
718 3006395986
719 3006499592
720 8023624689
721 8025419119
722 8054162273
723 8056829920

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13407

Peripla_BP_4

Periplasmic binding protein domain

47

307

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
7qsp-assembly1.cif.gz_B permutated c-terminal lobe of the ribose binding protein from thermotoga maritima 0.9196 136 228
7qsp-assembly1.cif.gz_A permutated c-terminal lobe of the ribose binding protein from thermotoga maritima 0.909 136 228
3m9x-assembly1.cif.gz_A open liganded crystal structure of xylose binding protein from escherichia coli 0.9023 32 317
7qsq-assembly2.cif.gz_B permutated n-terminal lobe of the ribose binding protein from thermotoga maritima 0.852 31 94
7pu4-assembly1.cif.gz_B crystal structure of the dimer rbp-n and rbp-trunc from thermotoga maritima ribose binding protein 0.8511 135 305
ID Description Score Start End Superfamily
5ibqA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9342 115 250 3.40.50.2300
5dteD02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.931 113 249 3.40.50.2300
1dbpA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9243 114 250 3.40.50.2300
2fn9B02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9188 114 250 3.40.50.2300
1gudA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9094 113 250 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A7K2KUH7-F1-model_v4 Substrate-binding domain-containing protein 0.9423 183 333 GO:0030246
GO:0030288
AF-A0A6C9X9M5-F1-model_v4 deleted 0.933 114 242
AF-A0A7K2KUH7-F1-model_v4 Substrate-binding domain-containing protein 0.9299 183 333 GO:0030246
GO:0030288
AF-A0A7Y0CUT0-F1-model_v4 Sugar ABC transporter substrate-binding protein 0.9097 18 327 GO:0030246
GO:0030288
AF-A0A535SUK3-F1-model_v4 Substrate-binding domain-containing protein 0.9087 106 327 GO:0030246
GO:0030288

Map