F416511

General Info

Members Datasets Scaffolds Average Seq Length
345 233 690 456

Family's Representative Sequence

Representative Sequence 3300046691|Ga0495670_0021922|Ga0495670_0021922_1459_2934
Length 491
Sequence MEESGPHTRTPANPQTQQARTTPGDAHMAPSIPPALNRPHFIGIGGAGMSGIAKILAQRGAHVAGSDAKDSETAAALRALGVTVHVGHAAAHLAADASSVVVSSAIRADNPELAAAHERGVPVVHRSDALAALMAGFRPIAVAGTHGKTTTTSMLAVSLGALGLDPSYAIGGDLDAPGSNAHHGTGAIFVAEADESDRSFQKYDPEVAIVLNVELDHHANYASMDQIYESFEIFTGKIRPGGTLVVGEHSGARELAARVAARDGLNIVRVGADDDADVRILDITPRGMTSEVTVLLDDAELPFTVSVPGRHYAHNAVAALAAGTALGVDPAELATALGSYTGVKRRLQLKGTANGVQVIDSYAHHPTEMTADLEALREAVAPGSRILVVFQPHLFSRTQELGLEMGQALTLADASVVLDIYPAREDPVPGITSALIIDAAAAKGADVTAEHDKAAVPGVIAGMAKPGDLVLTMGAGDVTDLGPAILAHLEN

Samples

Sample ID Description Type Environment
1 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
2 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
3 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
4 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
5 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
6 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
7 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
8 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
9 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
10 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
11 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
12 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
13 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
14 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
15 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
16 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
17 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
18 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
19 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
20 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
21 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
22 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
23 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
24 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
25 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
26 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
27 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
28 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
29 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
30 3300042133 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB1023D_E14_070716_134 Metagenome Rhizosphere
31 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
32 3300042135 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 Metagenome Rhizosphere
33 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
34 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
35 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
36 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
37 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
38 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
39 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
40 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
41 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
42 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
43 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
44 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
45 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
46 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
47 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
48 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
49 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
50 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
51 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
52 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
53 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
54 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
55 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
56 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
57 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
58 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
59 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
60 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
61 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
62 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
63 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
64 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
65 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
66 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
67 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
68 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
69 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
70 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
71 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
72 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
73 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
74 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
75 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
76 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
77 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
78 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
79 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
80 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
81 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
82 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
83 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
84 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
85 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
86 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
87 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
88 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
89 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
90 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
91 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
92 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
93 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
94 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
95 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
96 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
97 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
98 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
99 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
100 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
101 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
102 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
103 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
104 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
105 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
106 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
107 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
108 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
111 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
118 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
120 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
124 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
125 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
126 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
127 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
128 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
129 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
130 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
131 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
133 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
134 3300053101 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 endosphere Metagenome Endosphere
135 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
136 3300053143 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 endosphere Metagenome Endosphere
137 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
138 3300053732 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 endosphere Metagenome Endosphere
139 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
140 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
141 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
142 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
143 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
144 2582581312 Streptomyces atratus OK008 Isolate Rhizosphere
145 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
146 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
147 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
148 2643221548 Streptomyces sp. Root55 Isolate Unclassified
149 2643221578 Streptomyces sp. Root63 Isolate Unclassified
150 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
151 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
152 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
153 2643221647 Streptomyces sp. Root369 Isolate Unclassified
154 2643221670 Streptomyces sp. Root431 Isolate Unclassified
155 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
156 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
157 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
158 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
159 2643221714 Streptomyces sp. Root264 Isolate Unclassified
160 2767802112 Streptomyces avicenniae NRRL B-24776 Isolate Rhizosphere
161 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
162 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
163 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
164 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
165 2802429296 Streptomyces sampsonii KJ40 Isolate Rhizosphere
166 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
167 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
168 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
169 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
170 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
171 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
172 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
173 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
174 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
175 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
176 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
177 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
178 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
179 2862574272 Streptomyces sp. AcE210 Isolate Nodule
180 2862705112 Streptomyces triticirhizae NEAU-YY642 Isolate Rhizosphere
181 2867369537 Streptomyces sp. Z26 Isolate Unclassified
182 2867428634 Streptomyces sp. RP5T Isolate Unclassified
183 2867475112 Streptomyces sp. TM32 Isolate Unclassified
184 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
185 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
186 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
187 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
188 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
189 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
190 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
191 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
192 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere
193 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
194 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
195 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
196 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
197 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
198 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
199 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
200 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
201 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
202 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
203 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
204 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
205 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
206 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
207 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
208 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
209 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
210 2990044586 Streptomyces sedi JCM 16909 Isolate Unclassified
211 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
212 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified
213 2995463766 Streptacidiphilus fuscans NEAU-YB345 Isolate Unclassified
214 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
215 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
216 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
217 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
218 3006425503 Streptomyces zingiberis PLAI1-29 Isolate Unclassified
219 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
220 8008485437 Streptomyces mimosae 3MP-10 Isolate Unclassified
221 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
222 8025413630 Streptomyces sp. CAI-17 Isolate Rhizosphere
223 8025524527 Streptomyces sp. 3MP-14 Isolate Unclassified
224 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
225 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
226 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
227 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
228 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
229 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
230 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
231 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
232 8056447290 Streptomyces huiliensis SCA2-4 Isolate Rhizosphere
233 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 72.46
Metatranscriptomes 0.87
Isolates 26.67

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.48
Nodule 0.87
Rhizoplane 0.58
Rhizosphere 76.23
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495670_0021922 3300046691 Bacteria 3153
2 JGI25160J50197_1018671 3300003354 Bacteria 2152
3 Ga0006562J51391_1085931 3300003578 Bacteria 1560
4 Ga0006562J51391_1171634 3300003578 Bacteria 6021
5 Ga0006562J51391_1171635 3300003578 Bacteria 3961
6 Ga0070707_100135356 3300005468 Bacteria 2397
7 Ga0075363_100036146 3300006048 Bacteria 2589
8 Ga0075367_10006458 3300006178 Bacteria 5928
9 Ga0099826_10077072 3300006948 Bacteria 2093
10 Ga0207426_1001265 3300025302 Bacteria 22064
11 Ga0207426_1014147 3300025302 Bacteria 2932
12 Ga0207646_10045705 3300025922 Bacteria 3930
13 Ga0307517_10015281 3300028786 Bacteria 10218
14 Ga0307517_10042123 3300028786 Bacteria 4908
15 Ga0307515_10000279 3300028794 Bacteria 125422
16 Ga0307515_10017352 3300028794 Bacteria 13117
17 Ga0307515_10133944 3300028794 Bacteria 2708
18 Ga0268256_1014190 3300030500 Bacteria 2378
19 Ga0307511_10037077 3300030521 Bacteria 4220
20 Ga0307512_10087461 3300030522 Bacteria 2194
21 Ga0307513_10040220 3300031456 Bacteria 5172
22 Ga0307513_10123194 3300031456 Bacteria 2554
23 Ga0307508_10004519 3300031616 Bacteria 13566
24 Ga0307508_10019572 3300031616 Bacteria 6151
25 Ga0307508_10027829 3300031616 Bacteria 5115
26 Ga0307514_10036451 3300031649 Bacteria 3909
27 Ga0307514_10036882 3300031649 Bacteria 3882
28 Ga0307516_10023223 3300031730 Bacteria 6361
29 Ga0307516_10102695 3300031730 Bacteria 2673
30 Ga0307518_10042223 3300031838 Bacteria 3319
31 Ga0307518_10064815 3300031838 Bacteria 2651
32 Ga0307510_10055373 3300033180 Bacteria 4143
33 Ga0307510_10055411 3300033180 Bacteria 4141
34 Ga0395900_0264135 3300037418 Bacteria 1718
35 Ga0395898_0125675 3300037466 Bacteria 2457
36 Ga0436364_0843730 3300037853 Bacteria 9692
37 Ga0451853_0189876 3300041512 Bacteria 2971
38 Ga0451853_1212618 3300041512 Bacteria 12579
39 Ga0439442_004111 3300042002 Bacteria 2886
40 Ga0439449_0000491 3300042007 Bacteria 14801
41 Ga0439449_0035498 3300042007 Bacteria 1856
42 Ga0439457_000103 3300042014 Bacteria 19897
43 Ga0439462_0008245 3300042015 Bacteria 2623
44 Ga0450894_000676 3300042131 Bacteria 5691
45 Ga0450896_005703 3300042133 Bacteria 1699
46 Ga0450898_001126 3300042134 Bacteria 3420
47 Ga0450899_002969 3300042135 Bacteria 1827
48 Ga0450903_000173 3300042138 Bacteria 14221
49 Ga0439458_0001760 3300042157 Bacteria 5393
50 Ga0439458_0006265 3300042157 Bacteria 2653
51 Ga0450908_002239 3300042184 Bacteria 3783
52 Ga0466969_0019455 3300044656 Bacteria 3529
53 Ga0466972_0005133 3300044658 Bacteria 6555
54 Ga0466972_0007180 3300044658 Bacteria 5593
55 Ga0466965_0002785 3300044683 Bacteria 7520
56 Ga0466966_0001422 3300044684 Bacteria 15425
57 Ga0466966_0002504 3300044684 Bacteria 12044
58 Ga0466966_0002760 3300044684 Bacteria 11531
59 Ga0466961_0000727 3300044693 Bacteria 20709
60 Ga0466961_0005401 3300044693 Bacteria 8048
61 Ga0466961_0025052 3300044693 Bacteria 3839
62 Ga0466961_0027640 3300044693 Bacteria 3649
63 Ga0466964_0021769 3300044706 Bacteria 2481
64 Ga0466971_0002453 3300044719 Bacteria 7831
65 Ga0466970_0001904 3300044765 Bacteria 10084
66 Ga0466957_0004663 3300044842 Bacteria 7662
67 Ga0466959_0000910 3300045049 Bacteria 17486
68 Ga0466959_0041740 3300045049 Bacteria 3386
69 Ga0466959_0060667 3300045049 Bacteria 2751
70 Ga0466967_0038532 3300045976 Bacteria 4100
71 Ga0495617_010264 3300046452 Bacteria 3206
72 Ga0495592_0007020 3300046454 Bacteria 8420
73 Ga0495592_0105535 3300046454 Bacteria 2001
74 Ga0495603_0001406 3300046455 Bacteria 14003
75 Ga0495603_0003678 3300046455 Bacteria 9127
76 Ga0495603_0009399 3300046455 Bacteria 5907
77 Ga0495603_0015159 3300046455 Bacteria 4662
78 Ga0495629_0002072 3300046459 Bacteria 15557
79 Ga0495629_0009282 3300046459 Bacteria 7196
80 Ga0495629_0012626 3300046459 Bacteria 6118
81 Ga0495629_0014860 3300046459 Bacteria 5600
82 Ga0495629_0037971 3300046459 Bacteria 3394
83 Ga0495638_0024442 3300046460 Bacteria 3940
84 Ga0495638_0068752 3300046460 Bacteria 2171
85 Ga0495651_0004710 3300046462 Bacteria 10437
86 Ga0495653_0000609 3300046463 Bacteria 27421
87 Ga0495580_0010305 3300046472 Bacteria 7288
88 Ga0495639_0001646 3300046475 Bacteria 9945
89 Ga0495662_0002561 3300046476 Bacteria 9176
90 Ga0495662_0023886 3300046476 Bacteria 2952
91 Ga0495662_0038793 3300046476 Bacteria 2302
92 Ga0495664_0045946 3300046477 Bacteria 2590
93 Ga0495585_0004275 3300046492 Bacteria 9304
94 Ga0495585_0021740 3300046492 Bacteria 3683
95 Ga0495585_0035523 3300046492 Bacteria 2815
96 Ga0495594_0029898 3300046499 Bacteria 2945
97 Ga0495594_0030520 3300046499 Bacteria 2917
98 Ga0495594_0030769 3300046499 Bacteria 2907
99 Ga0495594_0069322 3300046499 Bacteria 1959
100 Ga0495607_0014596 3300046501 Bacteria 5108
101 Ga0495583_0047639 3300046506 Bacteria 1970
102 Ga0495583_0059354 3300046506 Bacteria 1715
103 Ga0495606_0002213 3300046507 Bacteria 23258
104 Ga0495608_0001172 3300046511 Bacteria 18575
105 Ga0495608_0065971 3300046511 Bacteria 2370
106 Ga0495610_0072129 3300046512 Bacteria 1608
107 Ga0495616_0005629 3300046513 Bacteria 7667
108 Ga0495618_0014769 3300046514 Bacteria 4763
109 Ga0495618_0069418 3300046514 Bacteria 2240
110 Ga0495618_0086349 3300046514 Bacteria 2006
111 Ga0495628_0006085 3300046516 Bacteria 10550
112 Ga0495628_0058058 3300046516 Bacteria 3042
113 Ga0495628_0111913 3300046516 Bacteria 2099
114 Ga0495630_0039137 3300046517 Bacteria 3546
115 Ga0495630_0141083 3300046517 Bacteria 1832
116 Ga0495630_0170500 3300046517 Bacteria 1658
117 Ga0495632_0014360 3300046519 Bacteria 4482
118 Ga0495643_0003053 3300046522 Bacteria 12586
119 Ga0495666_0036674 3300046526 Bacteria 2387
120 Ga0495652_0086808 3300046529 Bacteria 2567
121 Ga0495665_0000918 3300046531 Bacteria 15540
122 Ga0495640_0008051 3300046533 Bacteria 8281
123 Ga0495640_0030159 3300046533 Bacteria 3885
124 Ga0495586_0010756 3300046535 Bacteria 4865
125 Ga0495586_0127813 3300046535 Bacteria 1422
126 Ga0495609_0004845 3300046538 Bacteria 7254
127 Ga0495645_0009680 3300046543 Bacteria 6741
128 Ga0495622_0003730 3300046557 Bacteria 7128
129 Ga0495667_0046727 3300046559 Bacteria 2861
130 Ga0495634_0012465 3300046642 Bacteria 6151
131 Ga0495634_0150764 3300046642 Bacteria 1470
132 Ga0495625_0020577 3300046660 Bacteria 5091
133 Ga0495635_0009121 3300046663 Bacteria 6926
134 Ga0495661_0033512 3300046665 Bacteria 3240
135 Ga0495588_0008905 3300046674 Bacteria 4620
136 Ga0495657_0016575 3300046675 Bacteria 5368
137 Ga0495657_0031117 3300046675 Bacteria 3733
138 Ga0495657_0036775 3300046675 Bacteria 3380
139 Ga0495599_0007419 3300046678 Bacteria 6649
140 Ga0495623_0004696 3300046679 Bacteria 8978
141 Ga0495623_0092977 3300046679 Bacteria 1847
142 Ga0495646_0004042 3300046680 Bacteria 9196
143 Ga0495646_0035607 3300046680 Bacteria 3087
144 Ga0495647_0037366 3300046681 Bacteria 1832
145 Ga0495658_0015734 3300046683 Bacteria 3884
146 Ga0495613_0010713 3300046689 Bacteria 6799
147 Ga0495613_0017001 3300046689 Bacteria 5415
148 Ga0495613_0075452 3300046689 Bacteria 2454
149 Ga0495613_0087420 3300046689 Bacteria 2259
150 Ga0495624_0046701 3300046690 Bacteria 2753
151 Ga0495589_0012002 3300046794 Bacteria 4492
152 Ga0495589_0039254 3300046794 Bacteria 2367
153 Ga0495589_0067479 3300046794 Bacteria 1750
154 Ga0495600_0006040 3300046809 Bacteria 7332
155 Ga0495600_0031365 3300046809 Bacteria 3443
156 Ga0495600_0091843 3300046809 Bacteria 1980
157 Ga0495604_0000258 3300047317 Bacteria 47028
158 Ga0495604_0000838 3300047317 Bacteria 25687
159 Ga0495604_0062859 3300047317 Bacteria 2834
160 Ga0495636_0007853 3300047318 Bacteria 4200
161 Ga0495636_0019881 3300047318 Bacteria 2702
162 Ga0495636_0032341 3300047318 Bacteria 2146
163 Ga0495674_0070001 3300047319 Bacteria 3032
164 Ga0495672_0017275 3300047320 Bacteria 4830
165 Ga0495676_0008589 3300047321 Bacteria 9357
166 Ga0495676_0016666 3300047321 Bacteria 6509
167 Ga0495676_0020778 3300047321 Bacteria 5752
168 Ga0495676_0117655 3300047321 Bacteria 1938
169 Ga0495683_0032387 3300047323 Bacteria 2662
170 Ga0495687_004900 3300047443 Bacteria 8773
171 Ga0495687_011456 3300047443 Bacteria 4768
172 Ga0495687_011963 3300047443 Bacteria 4626
173 Ga0495687_017565 3300047443 Bacteria 3563
174 Ga0495675_0002239 3300047444 Bacteria 11551
175 Ga0495675_0002528 3300047444 Bacteria 10956
176 Ga0495675_0002942 3300047444 Bacteria 10233
177 Ga0495675_0054574 3300047444 Bacteria 2535
178 Ga0495685_000370 3300047447 Bacteria 14364
179 Ga0495685_026503 3300047447 Bacteria 1994
180 Ga0495681_0080793 3300047470 Bacteria 1451
181 Ga0495684_0010662 3300047471 Bacteria 7104
182 Ga0495684_0175637 3300047471 Bacteria 1590
183 Ga0495602_0107109 3300048088 Bacteria 2279
184 Ga0496114_0073167 3300048917 Bacteria 2884
185 Ga0501031_0034383 3300049568 Bacteria 3307
186 Ga0501032_0014316 3300049569 Bacteria 5617
187 Ga0501032_0031347 3300049569 Bacteria 3645
188 Ga0501032_0071931 3300049569 Bacteria 2304
189 Ga0501033_0005835 3300049570 Bacteria 9684
190 Ga0501033_0010270 3300049570 Bacteria 7186
191 Ga0501033_0013020 3300049570 Bacteria 6343
192 Ga0501033_0069505 3300049570 Bacteria 2588
193 Ga0501034_0025642 3300049571 Bacteria 6004
194 Ga0501034_0058992 3300049571 Bacteria 3855
195 Ga0501034_0081449 3300049571 Bacteria 3239
196 Ga0501034_0083505 3300049571 Bacteria 3196
197 Ga0501034_0109868 3300049571 Bacteria 2748
198 Ga0501036_0003034 3300049572 Bacteria 13371
199 Ga0501036_0006887 3300049572 Bacteria 9238
200 Ga0501036_0116018 3300049572 Bacteria 2262
201 Ga0501037_0001741 3300049573 Bacteria 15802
202 Ga0501037_0006540 3300049573 Bacteria 8528
203 Ga0501037_0055727 3300049573 Bacteria 2890
204 Ga0501037_0067932 3300049573 Bacteria 2595
205 Ga0501038_0003833 3300049574 Bacteria 13984
206 Ga0501038_0013453 3300049574 Bacteria 7458
207 Ga0501038_0019917 3300049574 Bacteria 6038
208 Ga0501038_0082261 3300049574 Bacteria 2711
209 Ga0501038_0138412 3300049574 Bacteria 1993
210 Ga0501039_0001855 3300049575 Bacteria 15609
211 Ga0501039_0014175 3300049575 Bacteria 6104
212 Ga0501040_0003748 3300049576 Bacteria 9852
213 Ga0501041_0006067 3300049577 Bacteria 7067
214 Ga0501042_0002544 3300049578 Bacteria 11215
215 Ga0501042_0089446 3300049578 Bacteria 2209
216 Ga0501043_0015467 3300049579 Bacteria 5976
217 Ga0501046_0010600 3300049580 Bacteria 7909
218 Ga0501046_0021900 3300049580 Bacteria 5268
219 Ga0501047_0000036 3300049581 Bacteria 195504
220 Ga0501047_0001597 3300049581 Bacteria 22094
221 Ga0501047_0024094 3300049581 Bacteria 5845
222 Ga0501047_0039124 3300049581 Bacteria 4588
223 Ga0501047_0040067 3300049581 Bacteria 4530
224 Ga0501047_0049973 3300049581 Bacteria 4038
225 Ga0501047_0136817 3300049581 Bacteria 2330
226 Ga0501048_0008336 3300049582 Bacteria 7837
227 Ga0501048_0014359 3300049582 Bacteria 5865
228 Ga0501067_0011736 3300049583 Bacteria 4854
229 Ga0501068_0003439 3300049584 Bacteria 8517
230 Ga0501070_0003455 3300049586 Bacteria 13701
231 Ga0501070_0158268 3300049586 Bacteria 1868
232 Ga0501071_0003934 3300049587 Bacteria 9367
233 Ga0501072_0014605 3300049588 Bacteria 6019
234 Ga0501074_0008566 3300049590 Bacteria 7408
235 Ga0501074_0018386 3300049590 Bacteria 5075
236 Ga0501077_0055618 3300049593 Bacteria 2512
237 Ga0501083_0016912 3300049744 Bacteria 5094
238 Ga0501035_0017596 3300049822 Bacteria 6594
239 Ga0501035_0055389 3300049822 Bacteria 3540
240 Ga0501035_0064587 3300049822 Bacteria 3253
241 Ga0501044_0016018 3300049823 Bacteria 8064
242 Ga0501044_0155132 3300049823 Bacteria 2269
243 Ga0501044_0250392 3300049823 Bacteria 1713
244 nmdc:mga07m45_20103_c1 3300050496 Bacteria 3624
245 Ga0500553_043332 3300053101 Bacteria 2192
246 Ga0500560_004156 3300053107 Bacteria 3039
247 Ga0500560_012231 3300053107 Bacteria 2217
248 Ga0500579_050406 3300053143 Bacteria 2550
249 Ga0500634_0004372 3300053161 Bacteria 6514
250 Ga0500656_002942 3300053732 Bacteria 1569
251 Ga0501084_0001856 3300054114 Bacteria 16843
252 Ga0466962_0001139 3300061719 Bacteria 12271
253 Ga0530510_0020653 3300061734 Bacteria 4682
254 2547407494 2547132111 Bacteria 8013147
255 2554260467 2554235005 Bacteria 6457341
256 2585296983 2582581312 Bacteria 7308206
257 2585307314 2582581313 Bacteria 10042643
258 2616699121 2616644814 Bacteria 11555299
259 2616902429 2616644941 Bacteria 8510691
260 2643761805 2643221548 Bacteria 8053412
261 2643904127 2643221578 Bacteria 9213798
262 2643943331 2643221587 Bacteria 7586415
263 2644016649 2643221601 Bacteria 7493239
264 2644174955 2643221631 Bacteria 8168043
265 2644264852 2643221647 Bacteria 10741251
266 2644388307 2643221670 Bacteria 6497041
267 2644402482 2643221673 Bacteria 9196637
268 2644430799 2643221677 Bacteria 7584031
269 2644442519 2643221678 Bacteria 9540101
270 2644460768 2643221682 Bacteria 6743283
271 2644626676 2643221714 Bacteria 9015452
272 2768646247 2767802112 Bacteria 6465194
273 2784591212 2784132148 Bacteria 8627943
274 2785340513 2784746763 Bacteria 9783172
275 2785372242 2784746768 Bacteria 10036182
276 2786673321 2786546132 Bacteria 10419719
277 2804848643 2802429296 Bacteria 7227771
278 2808844694 2808606359 Bacteria 9866990
279 2808914260 2808606375 Bacteria 9466072
280 2811843790 2808606982 Bacteria 7791042
281 2812355253 2811994879 Bacteria 9313447
282 2812477971 2811994917 Bacteria 7761064
283 2819699560 2818991463 Bacteria 7948711
284 2819740178 2818991472 Bacteria 10089953
285 2852638741 2852635781 Bacteria 8251373
286 2862180209 2862178590 Bacteria 8583590
287 2862283972 2862281513 Bacteria 9621493
288 2862293439 2862290372 Bacteria 7471434
289 2862388153 2862382967 Bacteria 10317375
290 2862516555 2862507626 Bacteria 9425308
291 2862576799 2862574272 Bacteria 10567477
292 2862706980 2862705112 Bacteria 6563286
293 2867374469 2867369537 Bacteria 6501581
294 2867435542 2867428634 Bacteria 9590268
295 2867476196 2867475112 Bacteria 6909112
296 2873153398 2873151551 Bacteria 8625867
297 2875397384 2875391855 Bacteria 7600475
298 2877678401 2877676314 Bacteria 9512378
299 2912716903 2912715099 Bacteria 9460473
300 2912729472 2912723979 Bacteria 8557534
301 2912763623 2912757875 Bacteria 7940295
302 2918507210 2918501144 Bacteria 8668083
303 2919474931 2919468124 Bacteria 9133025
304 2935391167 2935390628 Bacteria 7043367
305 2946047123 2946045630 Bacteria 8527308
306 2946070641 2946064051 Bacteria 8957905
307 2946078368 2946072368 Bacteria 8999607
308 2947226173 2947224130 Bacteria 9938529
309 2954010331 2954002825 Bacteria 9173742
310 2954383347 2954380949 Bacteria 10050426
311 2954679624 2954673503 Bacteria 9685905
312 2954684531 2954682443 Bacteria 9862841
313 2954694056 2954691527 Bacteria 10720516
314 2954709161 2954701450 Bacteria 10834262
315 2954713663 2954711539 Bacteria 10867210
316 2954723627 2954721474 Bacteria 10456478
317 2954738206 2954731030 Bacteria 10243860
318 2954742529 2954740390 Bacteria 10229294
319 2954757066 2954749733 Bacteria 10366972
320 2954761495 2954759201 Bacteria 9358192
321 2966600139 2966598605 Bacteria 7676064
322 2990049167 2990044586 Bacteria 6603797
323 2990067137 2990059506 Bacteria 9321252
324 2990090349 2990088156 Bacteria 6657676
325 2995464846 2995463766 Bacteria 8577691
326 2997459479 2997451912 Bacteria 8492419
327 2997602083 2997600082 Bacteria 9896405
328 3006327226 3006321560 Bacteria 8247479
329 3006396214 3006393351 Bacteria 6615579
330 3006430179 3006425503 Bacteria 6491253
331 3006490191 3006486233 Bacteria 8157040
332 8008489997 8008485437 Bacteria 7198341
333 8023625776 8023623736 Bacteria 8593882
334 8025419090 8025413630 Bacteria 7014048
335 8025529270 8025524527 Bacteria 7197316
336 8025532799 8025530807 Bacteria 8495698
337 8047895482 8047893842 Bacteria 11723082
338 8048136520 8048127548 Bacteria 11053136
339 8048363472 8048356638 Bacteria 11044339
340 8048372507 8048369669 Bacteria 11666822
341 8048381441 8048379754 Bacteria 11877923
342 8048411160 8048406513 Bacteria 8936924
343 8054164376 8054160619 Bacteria 7783213
344 8056449482 8056447290 Bacteria 7680491
345 8056667094 8056667051 Bacteria 6953971
346 Ga0495670_0021922
347 JGI25160J50197_1018671
348 Ga0006562J51391_1085931
349 Ga0006562J51391_1171634
350 Ga0006562J51391_1171635
351 Ga0070707_100135356
352 Ga0075363_100036146
353 Ga0075367_10006458
354 Ga0099826_10077072
355 Ga0207426_1001265
356 Ga0207426_1014147
357 Ga0207646_10045705
358 Ga0307517_10015281
359 Ga0307517_10042123
360 Ga0307515_10000279
361 Ga0307515_10017352
362 Ga0307515_10133944
363 Ga0268256_1014190
364 Ga0307511_10037077
365 Ga0307512_10087461
366 Ga0307513_10040220
367 Ga0307513_10123194
368 Ga0307508_10004519
369 Ga0307508_10019572
370 Ga0307508_10027829
371 Ga0307514_10036451
372 Ga0307514_10036882
373 Ga0307516_10023223
374 Ga0307516_10102695
375 Ga0307518_10042223
376 Ga0307518_10064815
377 Ga0307510_10055373
378 Ga0307510_10055411
379 Ga0395900_0264135
380 Ga0395898_0125675
381 Ga0436364_0843730
382 Ga0451853_0189876
383 Ga0451853_1212618
384 Ga0439442_004111
385 Ga0439449_0000491
386 Ga0439449_0035498
387 Ga0439457_000103
388 Ga0439462_0008245
389 Ga0450894_000676
390 Ga0450896_005703
391 Ga0450898_001126
392 Ga0450899_002969
393 Ga0450903_000173
394 Ga0439458_0001760
395 Ga0439458_0006265
396 Ga0450908_002239
397 Ga0466969_0019455
398 Ga0466972_0005133
399 Ga0466972_0007180
400 Ga0466965_0002785
401 Ga0466966_0001422
402 Ga0466966_0002504
403 Ga0466966_0002760
404 Ga0466961_0000727
405 Ga0466961_0005401
406 Ga0466961_0025052
407 Ga0466961_0027640
408 Ga0466964_0021769
409 Ga0466971_0002453
410 Ga0466970_0001904
411 Ga0466957_0004663
412 Ga0466959_0000910
413 Ga0466959_0041740
414 Ga0466959_0060667
415 Ga0466967_0038532
416 Ga0495617_010264
417 Ga0495592_0007020
418 Ga0495592_0105535
419 Ga0495603_0001406
420 Ga0495603_0003678
421 Ga0495603_0009399
422 Ga0495603_0015159
423 Ga0495629_0002072
424 Ga0495629_0009282
425 Ga0495629_0012626
426 Ga0495629_0014860
427 Ga0495629_0037971
428 Ga0495638_0024442
429 Ga0495638_0068752
430 Ga0495651_0004710
431 Ga0495653_0000609
432 Ga0495580_0010305
433 Ga0495639_0001646
434 Ga0495662_0002561
435 Ga0495662_0023886
436 Ga0495662_0038793
437 Ga0495664_0045946
438 Ga0495585_0004275
439 Ga0495585_0021740
440 Ga0495585_0035523
441 Ga0495594_0029898
442 Ga0495594_0030520
443 Ga0495594_0030769
444 Ga0495594_0069322
445 Ga0495607_0014596
446 Ga0495583_0047639
447 Ga0495583_0059354
448 Ga0495606_0002213
449 Ga0495608_0001172
450 Ga0495608_0065971
451 Ga0495610_0072129
452 Ga0495616_0005629
453 Ga0495618_0014769
454 Ga0495618_0069418
455 Ga0495618_0086349
456 Ga0495628_0006085
457 Ga0495628_0058058
458 Ga0495628_0111913
459 Ga0495630_0039137
460 Ga0495630_0141083
461 Ga0495630_0170500
462 Ga0495632_0014360
463 Ga0495643_0003053
464 Ga0495666_0036674
465 Ga0495652_0086808
466 Ga0495665_0000918
467 Ga0495640_0008051
468 Ga0495640_0030159
469 Ga0495586_0010756
470 Ga0495586_0127813
471 Ga0495609_0004845
472 Ga0495645_0009680
473 Ga0495622_0003730
474 Ga0495667_0046727
475 Ga0495634_0012465
476 Ga0495634_0150764
477 Ga0495625_0020577
478 Ga0495635_0009121
479 Ga0495661_0033512
480 Ga0495588_0008905
481 Ga0495657_0016575
482 Ga0495657_0031117
483 Ga0495657_0036775
484 Ga0495599_0007419
485 Ga0495623_0004696
486 Ga0495623_0092977
487 Ga0495646_0004042
488 Ga0495646_0035607
489 Ga0495647_0037366
490 Ga0495658_0015734
491 Ga0495613_0010713
492 Ga0495613_0017001
493 Ga0495613_0075452
494 Ga0495613_0087420
495 Ga0495624_0046701
496 Ga0495589_0012002
497 Ga0495589_0039254
498 Ga0495589_0067479
499 Ga0495600_0006040
500 Ga0495600_0031365
501 Ga0495600_0091843
502 Ga0495604_0000258
503 Ga0495604_0000838
504 Ga0495604_0062859
505 Ga0495636_0007853
506 Ga0495636_0019881
507 Ga0495636_0032341
508 Ga0495674_0070001
509 Ga0495672_0017275
510 Ga0495676_0008589
511 Ga0495676_0016666
512 Ga0495676_0020778
513 Ga0495676_0117655
514 Ga0495683_0032387
515 Ga0495687_004900
516 Ga0495687_011456
517 Ga0495687_011963
518 Ga0495687_017565
519 Ga0495675_0002239
520 Ga0495675_0002528
521 Ga0495675_0002942
522 Ga0495675_0054574
523 Ga0495685_000370
524 Ga0495685_026503
525 Ga0495681_0080793
526 Ga0495684_0010662
527 Ga0495684_0175637
528 Ga0495602_0107109
529 Ga0496114_0073167
530 Ga0501031_0034383
531 Ga0501032_0014316
532 Ga0501032_0031347
533 Ga0501032_0071931
534 Ga0501033_0005835
535 Ga0501033_0010270
536 Ga0501033_0013020
537 Ga0501033_0069505
538 Ga0501034_0025642
539 Ga0501034_0058992
540 Ga0501034_0081449
541 Ga0501034_0083505
542 Ga0501034_0109868
543 Ga0501036_0003034
544 Ga0501036_0006887
545 Ga0501036_0116018
546 Ga0501037_0001741
547 Ga0501037_0006540
548 Ga0501037_0055727
549 Ga0501037_0067932
550 Ga0501038_0003833
551 Ga0501038_0013453
552 Ga0501038_0019917
553 Ga0501038_0082261
554 Ga0501038_0138412
555 Ga0501039_0001855
556 Ga0501039_0014175
557 Ga0501040_0003748
558 Ga0501041_0006067
559 Ga0501042_0002544
560 Ga0501042_0089446
561 Ga0501043_0015467
562 Ga0501046_0010600
563 Ga0501046_0021900
564 Ga0501047_0000036
565 Ga0501047_0001597
566 Ga0501047_0024094
567 Ga0501047_0039124
568 Ga0501047_0040067
569 Ga0501047_0049973
570 Ga0501047_0136817
571 Ga0501048_0008336
572 Ga0501048_0014359
573 Ga0501067_0011736
574 Ga0501068_0003439
575 Ga0501070_0003455
576 Ga0501070_0158268
577 Ga0501071_0003934
578 Ga0501072_0014605
579 Ga0501074_0008566
580 Ga0501074_0018386
581 Ga0501077_0055618
582 Ga0501083_0016912
583 Ga0501035_0017596
584 Ga0501035_0055389
585 Ga0501035_0064587
586 Ga0501044_0016018
587 Ga0501044_0155132
588 Ga0501044_0250392
589 nmdc:mga07m45_20103_c1
590 Ga0500553_043332
591 Ga0500560_004156
592 Ga0500560_012231
593 Ga0500579_050406
594 Ga0500634_0004372
595 Ga0500656_002942
596 Ga0501084_0001856
597 Ga0466962_0001139
598 Ga0530510_0020653
599 2547407494
600 2554260467
601 2585296983
602 2585307314
603 2616699121
604 2616902429
605 2643761805
606 2643904127
607 2643943331
608 2644016649
609 2644174955
610 2644264852
611 2644388307
612 2644402482
613 2644430799
614 2644442519
615 2644460768
616 2644626676
617 2768646247
618 2784591212
619 2785340513
620 2785372242
621 2786673321
622 2804848643
623 2808844694
624 2808914260
625 2811843790
626 2812355253
627 2812477971
628 2819699560
629 2819740178
630 2852638741
631 2862180209
632 2862283972
633 2862293439
634 2862388153
635 2862516555
636 2862576799
637 2862706980
638 2867374469
639 2867435542
640 2867476196
641 2873153398
642 2875397384
643 2877678401
644 2912716903
645 2912729472
646 2912763623
647 2918507210
648 2919474931
649 2935391167
650 2946047123
651 2946070641
652 2946078368
653 2947226173
654 2954010331
655 2954383347
656 2954679624
657 2954684531
658 2954694056
659 2954709161
660 2954713663
661 2954723627
662 2954738206
663 2954742529
664 2954757066
665 2954761495
666 2966600139
667 2990049167
668 2990067137
669 2990090349
670 2995464846
671 2997459479
672 2997602083
673 3006327226
674 3006396214
675 3006430179
676 3006490191
677 8008489997
678 8023625776
679 8025419090
680 8025529270
681 8025532799
682 8047895482
683 8048136520
684 8048363472
685 8048372507
686 8048381441
687 8048411160
688 8054164376
689 8056449482
690 8056667094

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01225

Mur_ligase

Mur ligase family, catalytic domain

38

138

0.98

PF02875

Mur_ligase_C

Mur ligase, glutamate ligase domain

345

476

0.94

PF21799

MurD-like_N

Mur ligase MurD-like, N-terminal domain

38

125

0.89

PF08245

Mur_ligase_M

Mur ligase middle domain

142

323

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
6cau-assembly1.cif.gz_A udp-n-acetylmuramate--alanine ligase from acinetobacter baumannii ab5075-uw with amppnp 0.9416 4 315
1p3d-assembly2.cif.gz_B crystal structure of udp-n-acetylmuramic acid:l-alanine ligase (murc) in complex with uma and anp. 0.9355 11 454
6cau-assembly1.cif.gz_A udp-n-acetylmuramate--alanine ligase from acinetobacter baumannii ab5075-uw with amppnp 0.9327 4 315
2f00-assembly1.cif.gz_B escherichia coli murc 0.9301 2 458
2f00-assembly1.cif.gz_B escherichia coli murc 0.9262 2 458
ID Description Score Start End Superfamily
1gqqB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9797 13 97 3.40.50.720
af_Q2FX21_1_55_3.10.110.10 Alpha Beta;Roll;Ubiquitin Conjugating Enzyme;Ubiquitin Conjugating Enzyme 0.9648 250 278 3.10.110.10
1gqqB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9573 13 97 3.40.50.720
af_P9WJL7_104_328_3.40.1190.10 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Mur-like, catalytic domain 0.9529 100 314 3.40.1190.10
af_P9WJL7_8_102_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9527 8 97 3.40.50.720
ID Description Score Start End GO Terms
AF-V7MGR2-F1-model_v4 deleted 0.9684 4 221
AF-A0A2G5P713-F1-model_v4 UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8) (UDP-N-acetylmuramoyl-L-alanine synthetase) 0.9522 1 457 GO:0005524
GO:0005737
GO:0008360
GO:0008763
GO:0009252
GO:0051301
GO:0071555
AF-A0A5R8UYN9-F1-model_v4 deleted 0.952 7 456
AF-A0A3D3RNP4-F1-model_v4 UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8) 0.9506 10 246 GO:0005524
GO:0008763
GO:0009058
AF-A0A2G5P713-F1-model_v4 UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8) (UDP-N-acetylmuramoyl-L-alanine synthetase) 0.9482 1 457 GO:0005524
GO:0005737
GO:0008360
GO:0008763
GO:0009252
GO:0051301
GO:0071555

Map