F414568

General Info

Members Datasets Scaffolds Average Seq Length
340 234 680 832

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|3006425503|3006426222
Length 950
Sequence PARPGAAPARPDRVRAPRRARAGTPRPAPCRGRQNGAMGRGKLRIYLGAAPGVGKTYAMLSEARRRAERGTDVVVALAEPHGRRCTAALLDGLEQIPRLRQDGAGPDGAGPGGTGAAGAGGRPAGSRGGGGPGAAEADHGAGGPDGIGASEGSAGAGGSGEAGRPEGSALSAGSGEMDVAAVLERRPAVAVVDELAHTNAPGSRNPKRWKDVEELLRAGIDVVSTVNIQHLESLGDVVESITGVRQQETVPDEVVRRADQIELVDMSPEALRRRMAHGNIYAPDKVDAALSNYFRPGNLTALRELALLWTADRVDEYLQRYRSEQGIRSTWQARERIVVGLTGGPEGRTLLRRAARVAARGSGGEILAVHISPSTGLAYPSPKELAVQRTLVEDLGGTFHHVIGDAVPEALLDFARGVNATQILLGSSRRKPWQYVFGPGVGATVARESGPDLDVHIVTHEEAAKGRGLPVPRGVRLGRSRSVAGWLAGVLGPVLLTVVLNAQHPRPEFANDVLLYLFVAVVAALLGGLLPALASAALGTVLLNYYFTPPTRTLTVADPGNLVSIAVFFAVAVSAAAVVDLAARRTQQAARLRAESQILSFLAGGVLRGETSLEALLERVRETFAMGSVALLERESDVEPWRRAGTVGPDPAGCPEDADVDMPVGDHMMLALRGRVLPAADRRVLSAFAAQAVAVRDRERLVGEAERARELAEGNRIRTALLAAVSHDLRTPLAAIKAAVSSLRSADVSWSAEDERELLAGIEEGADRLDHLVGNLLDMSRLQTGTVTPLIRDADLDEVVPVALGGVPDGSVVLDVPETLPMVAVDPGLLERAVANVVENAVKYSPDGAPVMVAASALGERVELRVVDRGPGVPDTAKERIFEPFQRHGDAPQGAGVGLGLAVARGFAEAMGGTLTAEDTPGGGMTMVLTLRAAGGRPPCRPGLPATVTS

Samples

Sample ID Description Type Environment
1 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
2 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
3 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
4 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
5 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
6 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
7 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
8 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
9 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
10 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
11 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
12 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
13 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
14 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
15 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
16 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
17 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
18 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
19 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
20 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
23 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
24 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
25 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
26 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
27 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
28 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
29 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
30 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
31 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
32 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
33 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
34 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
35 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
36 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
37 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
38 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
39 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
40 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
41 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
42 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
43 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
44 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
45 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
46 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
47 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
48 3300042135 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_070716_127 Metagenome Rhizosphere
49 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
50 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
51 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
52 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
53 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
54 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
55 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
56 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
57 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
58 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
59 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
60 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
61 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
62 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
63 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
64 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
65 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
66 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
67 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
68 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
69 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
70 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
71 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
72 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
73 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
74 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
75 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
76 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
77 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
78 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
79 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
80 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
81 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
82 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
83 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
84 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
85 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
86 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
87 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
88 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
89 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
90 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
91 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
92 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
93 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
94 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
95 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
96 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
97 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
98 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
99 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
100 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
101 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
102 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
103 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
104 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
105 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
106 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
107 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
108 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
109 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
114 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
115 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
119 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
120 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
121 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
122 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
123 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
124 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
125 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
126 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
127 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
128 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
129 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
130 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
131 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
132 3006425503 Streptomyces zingiberis PLAI1-29 Isolate Unclassified
133 2515154155 Actinopolymorpha alba DSM 45243 Isolate Rhizosphere
134 2517572101 Frankia sp. DC12 Isolate Nodule
135 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
136 2579778521 Frankia torreyi CpI1-S Isolate Unclassified
137 2582581312 Streptomyces atratus OK008 Isolate Rhizosphere
138 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
139 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
140 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
141 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
142 2619619003 Frankia sp. CpI1-P Isolate Nodule
143 2643221548 Streptomyces sp. Root55 Isolate Unclassified
144 2643221578 Streptomyces sp. Root63 Isolate Unclassified
145 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
146 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
147 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
148 2643221647 Streptomyces sp. Root369 Isolate Unclassified
149 2643221670 Streptomyces sp. Root431 Isolate Unclassified
150 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
151 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
152 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
153 2643221714 Streptomyces sp. Root264 Isolate Unclassified
154 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
155 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
156 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
157 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
158 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
159 2802429296 Streptomyces sampsonii KJ40 Isolate Rhizosphere
160 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
161 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
162 2808606448 Streptomyces sp. 193411 Isolate Unclassified
163 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
164 2811994880 Cellulomonas sp. SLBN-39 Isolate Unclassified
165 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
166 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
167 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
168 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
169 2842888712 Tsukamurella sp. R-71941 Isolate Unclassified
170 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
171 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
172 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
173 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
174 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
175 2862574272 Streptomyces sp. AcE210 Isolate Nodule
176 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
177 2867369537 Streptomyces sp. Z26 Isolate Unclassified
178 2867428634 Streptomyces sp. RP5T Isolate Unclassified
179 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
180 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
181 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
182 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
183 2891554331 Microbispora sp. CL1-1 Isolate Unclassified
184 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
185 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
186 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
187 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
188 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
189 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere
190 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
191 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
192 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
193 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
194 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
195 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
196 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
197 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
198 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
199 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
200 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
201 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
202 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
203 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
204 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
205 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
206 2990044586 Streptomyces sedi JCM 16909 Isolate Unclassified
207 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
208 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified
209 2995463766 Streptacidiphilus fuscans NEAU-YB345 Isolate Unclassified
210 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
211 2997600082 Streptomyces coffeae CA1R205 Isolate Unclassified
212 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified
213 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
214 3006486233 Streptomyces sp. BR123 Isolate Rhizosphere
215 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
216 8008485437 Streptomyces mimosae 3MP-10 Isolate Unclassified
217 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
218 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
219 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
220 8025413630 Streptomyces sp. CAI-17 Isolate Rhizosphere
221 8025524527 Streptomyces sp. 3MP-14 Isolate Unclassified
222 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
223 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
224 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
225 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
226 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
227 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
228 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
229 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
230 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
231 8055066027 Sphaerisporangium corydalis NEAU-YHS15 Isolate Unclassified
232 8056447290 Streptomyces huiliensis SCA2-4 Isolate Rhizosphere
233 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere
234 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 62.35
Metatranscriptomes 0.29
Isolates 37.35

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.65
Nodule 1.76
Rhizoplane 1.76
Rhizosphere 67.06
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10008308 3300003323 Bacteria 5276
2 JGI25160J50197_1012067 3300003354 Bacteria 3026
3 Ga0006562J51391_1074369 3300003578 Bacteria 4033
4 Ga0070681_10014417 3300005458 Bacteria 7866
5 Ga0068859_100000102 3300005617 Bacteria 79658
6 Ga0081455_10000265 3300005937 Bacteria 68995
7 Ga0081455_10001518 3300005937 Bacteria 28622
8 Ga0081539_10015136 3300005985 Bacteria 5637
9 Ga0075367_10016475 3300006178 Bacteria 4036
10 Ga0075428_100007503 3300006844 Bacteria 12086
11 Ga0075430_100018991 3300006846 Bacteria 5849
12 Ga0097620_100000102 3300006931 Bacteria 79658
13 Ga0105249_10022930 3300009553 Bacteria 5596
14 Ga0182008_10001178 3300014497 Bacteria 18029
15 Ga0182008_10003209 3300014497 Bacteria 9990
16 Ga0182007_10002470 3300015262 Bacteria 9169
17 Ga0183367_1001 3300015688 Bacteria 1225545
18 Ga0213873_10000563 3300021358 Bacteria 6018
19 Ga0207426_1002813 3300025302 Bacteria 10408
20 Ga0207426_1003325 3300025302 Bacteria 8882
21 Ga0207647_10008978 3300025904 Bacteria 7121
22 Ga0207707_10032015 3300025912 Bacteria 4604
23 Ga0207712_10001512 3300025961 Bacteria 15779
24 Ga0207658_10010547 3300025986 Bacteria 6279
25 Ga0207428_10013877 3300027907 Bacteria 7017
26 Ga0307517_10014046 3300028786 Bacteria 10803
27 Ga0307515_10000886 3300028794 Bacteria 68938
28 Ga0307515_10003056 3300028794 Bacteria 35446
29 Ga0265338_10000646 3300028800 Bacteria 60312
30 Ga0307511_10000430 3300030521 Bacteria 44840
31 Ga0307511_10000457 3300030521 Bacteria 44027
32 Ga0307511_10012806 3300030521 Bacteria 8208
33 Ga0307512_10000296 3300030522 Bacteria 71852
34 Ga0307512_10004492 3300030522 Bacteria 15267
35 Ga0265325_10000466 3300031241 Bacteria 29357
36 Ga0265340_10000166 3300031247 Bacteria 33210
37 Ga0265331_10021018 3300031250 Bacteria 3343
38 Ga0265327_10004098 3300031251 Bacteria 13168
39 Ga0265316_10012822 3300031344 Bacteria 7488
40 Ga0307513_10027481 3300031456 Bacteria 6533
41 Ga0307513_10031837 3300031456 Bacteria 5962
42 Ga0307509_10052196 3300031507 Bacteria 4366
43 Ga0307509_10060794 3300031507 Bacteria 3991
44 Ga0265313_10000878 3300031595 Bacteria 30394
45 Ga0307508_10005252 3300031616 Bacteria 12358
46 Ga0307508_10015854 3300031616 Bacteria 6867
47 Ga0307508_10034008 3300031616 Bacteria 4596
48 Ga0307514_10002462 3300031649 Bacteria 19235
49 Ga0307514_10022305 3300031649 Bacteria 5148
50 Ga0307516_10007056 3300031730 Bacteria 13001
51 Ga0307516_10022037 3300031730 Bacteria 6547
52 Ga0307516_10034625 3300031730 Bacteria 5073
53 Ga0307507_10010553 3300033179 Bacteria 11908
54 Ga0307507_10015028 3300033179 Bacteria 9155
55 Ga0307507_10030937 3300033179 Bacteria 5630
56 Ga0307507_10061033 3300033179 Bacteria 3513
57 Ga0307510_10007224 3300033180 Bacteria 13231
58 Ga0307510_10019303 3300033180 Bacteria 7998
59 Ga0307510_10027750 3300033180 Bacteria 6479
60 Ga0307510_10038331 3300033180 Bacteria 5300
61 Ga0307510_10070591 3300033180 Bacteria 3486
62 Ga0373925_0000108 3300037068 Bacteria 89540
63 Ga0395898_0008319 3300037466 Bacteria 10969
64 Ga0395898_0045011 3300037466 Bacteria 4339
65 Ga0436364_0079632 3300037853 Bacteria 22279
66 Ga0436362_1200312 3300039453 Bacteria 21427
67 Ga0439439_0000084 3300041406 Bacteria 12287
68 Ga0451853_0566251 3300041512 Bacteria 4563
69 Ga0439449_0005431 3300042007 Bacteria 4883
70 Ga0439449_0010062 3300042007 Bacteria 3578
71 Ga0450899_000313 3300042135 Bacteria 5318
72 Ga0450903_000022 3300042138 Bacteria 30262
73 Ga0466969_0000884 3300044656 Bacteria 16205
74 Ga0466969_0020247 3300044656 Bacteria 3447
75 Ga0466972_0003889 3300044658 Bacteria 7442
76 Ga0466972_0004260 3300044658 Bacteria 7149
77 Ga0466972_0008077 3300044658 Bacteria 5274
78 Ga0466972_0012775 3300044658 Bacteria 4217
79 Ga0466972_0016086 3300044658 Bacteria 3740
80 Ga0466965_0003815 3300044683 Bacteria 6649
81 Ga0466966_0000824 3300044684 Bacteria 19742
82 Ga0466966_0022176 3300044684 Bacteria 4169
83 Ga0466961_0027924 3300044693 Bacteria 3628
84 Ga0466963_0000584 3300044694 Bacteria 17350
85 Ga0466971_0001042 3300044719 Bacteria 11491
86 Ga0466970_0003048 3300044765 Bacteria 8128
87 Ga0466960_0009647 3300044901 Bacteria 3986
88 Ga0466959_0002056 3300045049 Bacteria 12729
89 Ga0466959_0010094 3300045049 Bacteria 6734
90 Ga0466958_0003670 3300045836 Bacteria 8008
91 Ga0466967_0012168 3300045976 Bacteria 6566
92 Ga0495617_001036 3300046452 Bacteria 12764
93 Ga0495592_0029239 3300046454 Bacteria 4173
94 Ga0495603_0000396 3300046455 Bacteria 23900
95 Ga0495603_0000756 3300046455 Bacteria 18467
96 Ga0495603_0008138 3300046455 Bacteria 6336
97 Ga0495603_0036069 3300046455 Bacteria 2968
98 Ga0495629_0002026 3300046459 Bacteria 15756
99 Ga0495629_0005691 3300046459 Bacteria 9307
100 Ga0495629_0011289 3300046459 Bacteria 6490
101 Ga0495629_0020577 3300046459 Bacteria 4712
102 Ga0495629_0030077 3300046459 Bacteria 3851
103 Ga0495629_0041146 3300046459 Bacteria 3252
104 Ga0495638_0028067 3300046460 Bacteria 3637
105 Ga0495651_0002822 3300046462 Bacteria 13460
106 Ga0495651_0043626 3300046462 Bacteria 3479
107 Ga0495605_0002318 3300046474 Bacteria 11862
108 Ga0495662_0000321 3300046476 Bacteria 20834
109 Ga0495662_0001584 3300046476 Bacteria 11298
110 Ga0495664_0010234 3300046477 Bacteria 5261
111 Ga0495594_0007852 3300046499 Bacteria 5488
112 Ga0495607_0007406 3300046501 Bacteria 7597
113 Ga0495606_0020150 3300046507 Bacteria 4929
114 Ga0495618_0015233 3300046514 Bacteria 4691
115 Ga0495628_0008967 3300046516 Bacteria 8554
116 Ga0495628_0055998 3300046516 Bacteria 3105
117 Ga0495630_0013110 3300046517 Bacteria 6027
118 Ga0495640_0011539 3300046533 Bacteria 6795
119 Ga0495640_0016473 3300046533 Bacteria 5528
120 Ga0495622_0017174 3300046557 Bacteria 3369
121 Ga0495634_0009343 3300046642 Bacteria 7234
122 Ga0495634_0019755 3300046642 Bacteria 4783
123 Ga0495611_0007114 3300046648 Bacteria 4752
124 Ga0495635_0002816 3300046663 Bacteria 11936
125 Ga0495588_0008162 3300046674 Bacteria 4793
126 Ga0495588_0017637 3300046674 Bacteria 3471
127 Ga0495657_0005117 3300046675 Bacteria 10402
128 Ga0495657_0018385 3300046675 Bacteria 5061
129 Ga0495646_0004096 3300046680 Bacteria 9145
130 Ga0495613_0000584 3300046689 Bacteria 29483
131 Ga0495613_0006709 3300046689 Bacteria 8594
132 Ga0495613_0009219 3300046689 Bacteria 7318
133 Ga0495613_0024418 3300046689 Bacteria 4504
134 Ga0495613_0031104 3300046689 Bacteria 3964
135 Ga0495671_0006209 3300046692 Bacteria 6931
136 Ga0495600_0004401 3300046809 Bacteria 8425
137 Ga0495600_0008894 3300046809 Bacteria 6187
138 Ga0495581_0011866 3300047315 Bacteria 5042
139 Ga0495581_0017534 3300047315 Bacteria 4159
140 Ga0495604_0000340 3300047317 Bacteria 41703
141 Ga0495604_0001795 3300047317 Bacteria 17473
142 Ga0495604_0002079 3300047317 Bacteria 16141
143 Ga0495604_0016651 3300047317 Bacteria 5878
144 Ga0495604_0041434 3300047317 Bacteria 3611
145 Ga0495636_0008825 3300047318 Bacteria 3971
146 Ga0495676_0004800 3300047321 Bacteria 12382
147 Ga0495676_0004969 3300047321 Bacteria 12194
148 Ga0495676_0010219 3300047321 Bacteria 8522
149 Ga0495676_0019970 3300047321 Bacteria 5885
150 Ga0495676_0027290 3300047321 Bacteria 4897
151 Ga0495680_0011113 3300047322 Bacteria 7992
152 Ga0495687_002193 3300047443 Bacteria 16238
153 Ga0495687_002222 3300047443 Bacteria 16032
154 Ga0495687_004014 3300047443 Bacteria 10222
155 Ga0495687_004984 3300047443 Bacteria 8679
156 Ga0495687_007719 3300047443 Bacteria 6274
157 Ga0495687_009671 3300047443 Bacteria 5364
158 Ga0495687_010655 3300047443 Bacteria 5023
159 Ga0495675_0006461 3300047444 Bacteria 7176
160 Ga0495675_0015046 3300047444 Bacteria 4893
161 Ga0495685_003704 3300047447 Bacteria 4890
162 Ga0495685_007379 3300047447 Bacteria 3627
163 Ga0495681_0000167 3300047470 Bacteria 55030
164 Ga0495681_0001739 3300047470 Bacteria 16101
165 Ga0495681_0002051 3300047470 Bacteria 14647
166 Ga0495593_0002432 3300047673 Bacteria 11189
167 Ga0495602_0048553 3300048088 Bacteria 3813
168 Ga0495614_0002562 3300048089 Bacteria 8082
169 Ga0495614_0008564 3300048089 Bacteria 4548
170 Ga0495614_0015121 3300048089 Bacteria 3368
171 Ga0496109_0004127 3300048912 Bacteria 12134
172 Ga0496109_0062839 3300048912 Bacteria 3396
173 Ga0496110_0000368 3300048913 Bacteria 30153
174 Ga0496111_0012100 3300048914 Bacteria 5835
175 Ga0496114_0070871 3300048917 Bacteria 2929
176 Ga0496116_0000287 3300048919 Bacteria 85981
177 Ga0496118_0010953 3300048921 Bacteria 8912
178 Ga0496118_0011849 3300048921 Bacteria 8452
179 Ga0496119_0003477 3300048922 Bacteria 16333
180 Ga0496119_0008417 3300048922 Bacteria 9062
181 Ga0496125_0000074 3300048928 Bacteria 235549
182 Ga0496126_0015042 3300048929 Bacteria 7798
183 Ga0501031_0001589 3300049568 Bacteria 14167
184 Ga0501031_0001651 3300049568 Bacteria 13997
185 Ga0501032_0031489 3300049569 Bacteria 3636
186 Ga0501033_0005465 3300049570 Bacteria 10063
187 Ga0501034_0103153 3300049571 Bacteria 2845
188 Ga0501036_0019878 3300049572 Bacteria 5639
189 Ga0501036_0056398 3300049572 Bacteria 3329
190 Ga0501036_0075375 3300049572 Bacteria 2853
191 Ga0501037_0011260 3300049573 Bacteria 6584
192 Ga0501038_0000216 3300049574 Bacteria 49515
193 Ga0501039_0004160 3300049575 Bacteria 10896
194 Ga0501043_0009151 3300049579 Bacteria 7790
195 Ga0501047_0007576 3300049581 Bacteria 10218
196 Ga0501048_0002998 3300049582 Bacteria 12892
197 Ga0501068_0029408 3300049584 Bacteria 3253
198 Ga0501068_0031294 3300049584 Bacteria 3160
199 Ga0501070_0002168 3300049586 Bacteria 17250
200 Ga0501072_0018081 3300049588 Bacteria 5421
201 Ga0501035_0017544 3300049822 Bacteria 6604
202 Ga0501044_0000395 3300049823 Bacteria 54228
203 Ga0501044_0022581 3300049823 Bacteria 6704
204 Ga0501044_0034499 3300049823 Bacteria 5305
205 Ga0501044_0071975 3300049823 Bacteria 3515
206 nmdc:mga06z11_3478_c1 3300050494 Bacteria 6098
207 nmdc:mga05p37_4618_c1 3300050507 Bacteria 16099
208 nmdc:mga0qj67_4140_c1 3300050509 Bacteria 10511
209 Ga0500560_000435 3300053107 Bacteria 5730
210 Ga0500560_002842 3300053107 Bacteria 3402
211 Ga0500561_0003628 3300053137 Bacteria 2727
212 Ga0500573_0017311 3300053140 Bacteria 4102
213 Ga0501084_0028692 3300054114 Bacteria 4653
214 3006426222 3006425503 Bacteria 6491253
215 2515855715 2515154155 Bacteria 7985436
216 2517762282 2517572101 Bacteria 6884336
217 2547407350 2547132111 Bacteria 8013147
218 2579856488 2579778521 Bacteria 7624758
219 2585297262 2582581312 Bacteria 7308206
220 2585310118 2582581313 Bacteria 10042643
221 2585316045 2582581314 Bacteria 11452267
222 2585318518 2582581314 Bacteria 11452267
223 2616693589 2616644814 Bacteria 11555299
224 2616699234 2616644814 Bacteria 11555299
225 2616902303 2616644941 Bacteria 8510691
226 2620352648 2619619003 Bacteria 7619552
227 2643761353 2643221548 Bacteria 8053412
228 2643903111 2643221578 Bacteria 9213798
229 2643942662 2643221587 Bacteria 7586415
230 2643943632 2643221587 Bacteria 7586415
231 2644018635 2643221601 Bacteria 7493239
232 2644179770 2643221631 Bacteria 8168043
233 2644264989 2643221647 Bacteria 10741251
234 2644267012 2643221647 Bacteria 10741251
235 2644388406 2643221670 Bacteria 6497041
236 2644430121 2643221677 Bacteria 7584031
237 2644430946 2643221677 Bacteria 7584031
238 2644442376 2643221678 Bacteria 9540101
239 2644459245 2643221682 Bacteria 6743283
240 2644626501 2643221714 Bacteria 9015452
241 2784590847 2784132148 Bacteria 8627943
242 2785339460 2784746763 Bacteria 9783172
243 2785372065 2784746768 Bacteria 10036182
244 2786673178 2786546132 Bacteria 10419719
245 2793983802 2791355406 Bacteria 11364898
246 2804847990 2802429296 Bacteria 7227771
247 2804848387 2802429296 Bacteria 7227771
248 2808841079 2808606359 Bacteria 9866990
249 2808844565 2808606359 Bacteria 9866990
250 2808914141 2808606375 Bacteria 9466072
251 2808914828 2808606375 Bacteria 9466072
252 2809234601 2808606448 Bacteria 8656184
253 2811843939 2808606982 Bacteria 7791042
254 2812363332 2811994880 Bacteria 4147780
255 2812478308 2811994917 Bacteria 7761064
256 2819697662 2818991463 Bacteria 7948711
257 2819742792 2818991472 Bacteria 10089953
258 2837271403 2837268691 Bacteria 7850704
259 2842891132 2842888712 Bacteria 4279094
260 2852641527 2852635781 Bacteria 8251373
261 2852642244 2852635781 Bacteria 8251373
262 2862180303 2862178590 Bacteria 8583590
263 2862184469 2862178590 Bacteria 8583590
264 2862284117 2862281513 Bacteria 9621493
265 2862286419 2862281513 Bacteria 9621493
266 2862291127 2862290372 Bacteria 7471434
267 2862383339 2862382967 Bacteria 10317375
268 2862576944 2862574272 Bacteria 10567477
269 2862580163 2862574272 Bacteria 10567477
270 2863409121 2863404153 Bacteria 9672205
271 2867374280 2867369537 Bacteria 6501581
272 2867429571 2867428634 Bacteria 9590268
273 2873153597 2873151551 Bacteria 8625867
274 2875397207 2875391855 Bacteria 7600475
275 2875398024 2875391855 Bacteria 7600475
276 2877678510 2877676314 Bacteria 9512378
277 2891404033 2891395885 Bacteria 9251614
278 2891557734 2891554331 Bacteria 8812224
279 2912717080 2912715099 Bacteria 9460473
280 2912722648 2912715099 Bacteria 9460473
281 2912729683 2912723979 Bacteria 8557534
282 2912763267 2912757875 Bacteria 7940295
283 2918507049 2918501144 Bacteria 8668083
284 2919474202 2919468124 Bacteria 9133025
285 2935391530 2935390628 Bacteria 7043367
286 2935396891 2935390628 Bacteria 7043367
287 2935396941 2935390628 Bacteria 7043367
288 2946047355 2946045630 Bacteria 8527308
289 2946070340 2946064051 Bacteria 8957905
290 2946078213 2946072368 Bacteria 8999607
291 2954010575 2954002825 Bacteria 9173742
292 2954383481 2954380949 Bacteria 10050426
293 2954390305 2954380949 Bacteria 10050426
294 2954679495 2954673503 Bacteria 9685905
295 2954684661 2954682443 Bacteria 9862841
296 2954694128 2954691527 Bacteria 10720516
297 2954694273 2954691527 Bacteria 10720516
298 2954709236 2954701450 Bacteria 10834262
299 2954709476 2954701450 Bacteria 10834262
300 2954713780 2954711539 Bacteria 10867210
301 2954723747 2954721474 Bacteria 10456478
302 2954738089 2954731030 Bacteria 10243860
303 2954742647 2954740390 Bacteria 10229294
304 2954756947 2954749733 Bacteria 10366972
305 2954761611 2954759201 Bacteria 9358192
306 2966600396 2966598605 Bacteria 7676064
307 2990050247 2990044586 Bacteria 6603797
308 2990067477 2990059506 Bacteria 9321252
309 2990091225 2990088156 Bacteria 6657676
310 2995469541 2995463766 Bacteria 8577691
311 2997459580 2997451912 Bacteria 8492419
312 2997602684 2997600082 Bacteria 9896405
313 3003004031 3002998708 Bacteria 11715108
314 3006396557 3006393351 Bacteria 6615579
315 3006491928 3006486233 Bacteria 8157040
316 3006493474 3006486233 Bacteria 8157040
317 3006501594 3006493962 Bacteria 8825450
318 8008486662 8008485437 Bacteria 7198341
319 8008563286 8008558824 Bacteria 10610750
320 8008576675 8008574985 Bacteria 7815457
321 8023628423 8023623736 Bacteria 8593882
322 8025415171 8025413630 Bacteria 7014048
323 8025417266 8025413630 Bacteria 7014048
324 8025526047 8025524527 Bacteria 7197316
325 8025534024 8025530807 Bacteria 8495698
326 8025536053 8025530807 Bacteria 8495698
327 8047895613 8047893842 Bacteria 11723082
328 8048129951 8048127548 Bacteria 11053136
329 8048363326 8048356638 Bacteria 11044339
330 8048372636 8048369669 Bacteria 11666822
331 8048381571 8048379754 Bacteria 11877923
332 8048411352 8048406513 Bacteria 8936924
333 8048411402 8048406513 Bacteria 8936924
334 8053951116 8053945823 Bacteria 8962862
335 8054167247 8054160619 Bacteria 7783213
336 8055071051 8055066027 Bacteria 9479577
337 8056449019 8056447290 Bacteria 7680491
338 8056669893 8056667051 Bacteria 6953971
339 8056830006 8056829672 Bacteria 9045328
340 8056837737 8056829672 Bacteria 9045328
341 rootH1_10008308
342 JGI25160J50197_1012067
343 Ga0006562J51391_1074369
344 Ga0070681_10014417
345 Ga0068859_100000102
346 Ga0081455_10000265
347 Ga0081455_10001518
348 Ga0081539_10015136
349 Ga0075367_10016475
350 Ga0075428_100007503
351 Ga0075430_100018991
352 Ga0097620_100000102
353 Ga0105249_10022930
354 Ga0182008_10001178
355 Ga0182008_10003209
356 Ga0182007_10002470
357 Ga0183367_1001
358 Ga0213873_10000563
359 Ga0207426_1002813
360 Ga0207426_1003325
361 Ga0207647_10008978
362 Ga0207707_10032015
363 Ga0207712_10001512
364 Ga0207658_10010547
365 Ga0207428_10013877
366 Ga0307517_10014046
367 Ga0307515_10000886
368 Ga0307515_10003056
369 Ga0265338_10000646
370 Ga0307511_10000430
371 Ga0307511_10000457
372 Ga0307511_10012806
373 Ga0307512_10000296
374 Ga0307512_10004492
375 Ga0265325_10000466
376 Ga0265340_10000166
377 Ga0265331_10021018
378 Ga0265327_10004098
379 Ga0265316_10012822
380 Ga0307513_10027481
381 Ga0307513_10031837
382 Ga0307509_10052196
383 Ga0307509_10060794
384 Ga0265313_10000878
385 Ga0307508_10005252
386 Ga0307508_10015854
387 Ga0307508_10034008
388 Ga0307514_10002462
389 Ga0307514_10022305
390 Ga0307516_10007056
391 Ga0307516_10022037
392 Ga0307516_10034625
393 Ga0307507_10010553
394 Ga0307507_10015028
395 Ga0307507_10030937
396 Ga0307507_10061033
397 Ga0307510_10007224
398 Ga0307510_10019303
399 Ga0307510_10027750
400 Ga0307510_10038331
401 Ga0307510_10070591
402 Ga0373925_0000108
403 Ga0395898_0008319
404 Ga0395898_0045011
405 Ga0436364_0079632
406 Ga0436362_1200312
407 Ga0439439_0000084
408 Ga0451853_0566251
409 Ga0439449_0005431
410 Ga0439449_0010062
411 Ga0450899_000313
412 Ga0450903_000022
413 Ga0466969_0000884
414 Ga0466969_0020247
415 Ga0466972_0003889
416 Ga0466972_0004260
417 Ga0466972_0008077
418 Ga0466972_0012775
419 Ga0466972_0016086
420 Ga0466965_0003815
421 Ga0466966_0000824
422 Ga0466966_0022176
423 Ga0466961_0027924
424 Ga0466963_0000584
425 Ga0466971_0001042
426 Ga0466970_0003048
427 Ga0466960_0009647
428 Ga0466959_0002056
429 Ga0466959_0010094
430 Ga0466958_0003670
431 Ga0466967_0012168
432 Ga0495617_001036
433 Ga0495592_0029239
434 Ga0495603_0000396
435 Ga0495603_0000756
436 Ga0495603_0008138
437 Ga0495603_0036069
438 Ga0495629_0002026
439 Ga0495629_0005691
440 Ga0495629_0011289
441 Ga0495629_0020577
442 Ga0495629_0030077
443 Ga0495629_0041146
444 Ga0495638_0028067
445 Ga0495651_0002822
446 Ga0495651_0043626
447 Ga0495605_0002318
448 Ga0495662_0000321
449 Ga0495662_0001584
450 Ga0495664_0010234
451 Ga0495594_0007852
452 Ga0495607_0007406
453 Ga0495606_0020150
454 Ga0495618_0015233
455 Ga0495628_0008967
456 Ga0495628_0055998
457 Ga0495630_0013110
458 Ga0495640_0011539
459 Ga0495640_0016473
460 Ga0495622_0017174
461 Ga0495634_0009343
462 Ga0495634_0019755
463 Ga0495611_0007114
464 Ga0495635_0002816
465 Ga0495588_0008162
466 Ga0495588_0017637
467 Ga0495657_0005117
468 Ga0495657_0018385
469 Ga0495646_0004096
470 Ga0495613_0000584
471 Ga0495613_0006709
472 Ga0495613_0009219
473 Ga0495613_0024418
474 Ga0495613_0031104
475 Ga0495671_0006209
476 Ga0495600_0004401
477 Ga0495600_0008894
478 Ga0495581_0011866
479 Ga0495581_0017534
480 Ga0495604_0000340
481 Ga0495604_0001795
482 Ga0495604_0002079
483 Ga0495604_0016651
484 Ga0495604_0041434
485 Ga0495636_0008825
486 Ga0495676_0004800
487 Ga0495676_0004969
488 Ga0495676_0010219
489 Ga0495676_0019970
490 Ga0495676_0027290
491 Ga0495680_0011113
492 Ga0495687_002193
493 Ga0495687_002222
494 Ga0495687_004014
495 Ga0495687_004984
496 Ga0495687_007719
497 Ga0495687_009671
498 Ga0495687_010655
499 Ga0495675_0006461
500 Ga0495675_0015046
501 Ga0495685_003704
502 Ga0495685_007379
503 Ga0495681_0000167
504 Ga0495681_0001739
505 Ga0495681_0002051
506 Ga0495593_0002432
507 Ga0495602_0048553
508 Ga0495614_0002562
509 Ga0495614_0008564
510 Ga0495614_0015121
511 Ga0496109_0004127
512 Ga0496109_0062839
513 Ga0496110_0000368
514 Ga0496111_0012100
515 Ga0496114_0070871
516 Ga0496116_0000287
517 Ga0496118_0010953
518 Ga0496118_0011849
519 Ga0496119_0003477
520 Ga0496119_0008417
521 Ga0496125_0000074
522 Ga0496126_0015042
523 Ga0501031_0001589
524 Ga0501031_0001651
525 Ga0501032_0031489
526 Ga0501033_0005465
527 Ga0501034_0103153
528 Ga0501036_0019878
529 Ga0501036_0056398
530 Ga0501036_0075375
531 Ga0501037_0011260
532 Ga0501038_0000216
533 Ga0501039_0004160
534 Ga0501043_0009151
535 Ga0501047_0007576
536 Ga0501048_0002998
537 Ga0501068_0029408
538 Ga0501068_0031294
539 Ga0501070_0002168
540 Ga0501072_0018081
541 Ga0501035_0017544
542 Ga0501044_0000395
543 Ga0501044_0022581
544 Ga0501044_0034499
545 Ga0501044_0071975
546 nmdc:mga06z11_3478_c1
547 nmdc:mga05p37_4618_c1
548 nmdc:mga0qj67_4140_c1
549 Ga0500560_000435
550 Ga0500560_002842
551 Ga0500561_0003628
552 Ga0500573_0017311
553 Ga0501084_0028692
554 3006426222
555 2515855715
556 2517762282
557 2547407350
558 2579856488
559 2585297262
560 2585310118
561 2585316045
562 2585318518
563 2616693589
564 2616699234
565 2616902303
566 2620352648
567 2643761353
568 2643903111
569 2643942662
570 2643943632
571 2644018635
572 2644179770
573 2644264989
574 2644267012
575 2644388406
576 2644430121
577 2644430946
578 2644442376
579 2644459245
580 2644626501
581 2784590847
582 2785339460
583 2785372065
584 2786673178
585 2793983802
586 2804847990
587 2804848387
588 2808841079
589 2808844565
590 2808914141
591 2808914828
592 2809234601
593 2811843939
594 2812363332
595 2812478308
596 2819697662
597 2819742792
598 2837271403
599 2842891132
600 2852641527
601 2852642244
602 2862180303
603 2862184469
604 2862284117
605 2862286419
606 2862291127
607 2862383339
608 2862576944
609 2862580163
610 2863409121
611 2867374280
612 2867429571
613 2873153597
614 2875397207
615 2875398024
616 2877678510
617 2891404033
618 2891557734
619 2912717080
620 2912722648
621 2912729683
622 2912763267
623 2918507049
624 2919474202
625 2935391530
626 2935396891
627 2935396941
628 2946047355
629 2946070340
630 2946078213
631 2954010575
632 2954383481
633 2954390305
634 2954679495
635 2954684661
636 2954694128
637 2954694273
638 2954709236
639 2954709476
640 2954713780
641 2954723747
642 2954738089
643 2954742647
644 2954756947
645 2954761611
646 2966600396
647 2990050247
648 2990067477
649 2990091225
650 2995469541
651 2997459580
652 2997602684
653 3003004031
654 3006396557
655 3006491928
656 3006493474
657 3006501594
658 8008486662
659 8008563286
660 8008576675
661 8023628423
662 8025415171
663 8025417266
664 8025526047
665 8025534024
666 8025536053
667 8047895613
668 8048129951
669 8048363326
670 8048372636
671 8048381571
672 8048411352
673 8048411402
674 8053951116
675 8054167247
676 8055071051
677 8056449019
678 8056669893
679 8056830006
680 8056837737

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02702

KdpD

Osmosensitive K+ channel His kinase sensor domain

167

314

0.98

PF02518

HATPase_c

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

825

935

0.96

PF02702

KdpD

Osmosensitive K+ channel His kinase sensor domain

39

107

0.95

PF00512

HisKA

His Kinase A (phospho-acceptor) domain

717

785

0.94

PF13493

DUF4118

Domain of unknown function (DUF4118)

486

592

0.94

PF00582

Usp

Universal stress protein family

333

458

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
7ji4-assembly1.cif.gz_A universal stress protein (usp) domain of kdpd histidine kinase in complex with second messenger c-di-amp 0.8543 83 206
4u7n-assembly1.cif.gz_B inactive structure of histidine kinase 0.8369 471 676
4u7n-assembly1.cif.gz_A inactive structure of histidine kinase 0.8361 471 676
6blk-assembly2.cif.gz_D mycobacterial sensor histidine kinase mprb 0.8329 538 675
3a0w-assembly1.cif.gz_A catalytic domain of histidine kinase thka (tm1359) for mad phasing (nucleotide free form 2, orthorombic) 0.8258 537 675
ID Description Score Start End Superfamily
af_P9WGL3_395_501_1.20.120.620 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Backbone structure of the membrane domain of e. Coli histidine kinase receptor kdpd, 0.9786 229 330 1.20.120.620
af_P9WGL3_395_501_1.20.120.620 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Backbone structure of the membrane domain of e. Coli histidine kinase receptor kdpd, 0.9252 229 330 1.20.120.620
4kp4B01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.9095 464 527 1.10.287.130
af_P21865_396_502_1.20.120.620 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Backbone structure of the membrane domain of e. Coli histidine kinase receptor kdpd, 0.9058 228 330 1.20.120.620
af_P21865_736_887_3.30.565.10 Alpha Beta;2-Layer Sandwich;Heat Shock Protein 90;Histidine kinase-like ATPase, C-terminal domain 0.8964 538 680 3.30.565.10
ID Description Score Start End GO Terms
AF-A0A2V9ULQ1-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.9099 531 676 GO:0000155
GO:0005886
AF-A0A356R3S2-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.8873 517 679 GO:0000155
GO:0005886
AF-A0A0B0HJ18-F1-model_v4 deleted 0.8863 560 681
AF-A0A2N1UVT9-F1-model_v4 histidine kinase (EC 2.7.13.3) 0.8828 570 679 GO:0016301
AF-A0A381H5D2-F1-model_v4 deleted 0.8787 462 674

Map