F408460

General Info

Members Datasets Scaffolds Average Seq Length
326 171 652 563

Family's Representative Sequence

Representative Sequence 3300045976|Ga0466967_0031129|Ga0466967_0031129_1152_3047
Length 614
Sequence MSRLAAPCANAALASRPSARARCQPHSAGPQFAFGNGVIVLMEQPVSRAMQFDSKRMIPVVIAALAAVAGCKHTSESNGEVSRNWTPSQQDTYMGVPAAQVQAAIRQRLDSQPPAPVQADSWKHVKGLYARFGDNLLWLDDKGVHQPRVSALLNVLAGADSDAIRLDALPLADLDRALRTVDGTKHPTAAQLADADVLLSAAYATYGENMLTGQLDPHEFNQSWHINRQEEKVDSALTLTMREDDLAAGLVRMRPQDPMYDSLRTEFVRYRDVVARGGWQPIPDGPQLKPGKSAPPARIAALRARLAAEGYVSDARASQPRGLYDRELAGAVARFQADHSIAVDSMLGGETLQAMNLPAQYRLGQIAANLERYRWMPRTLGSRYILVNVPQFFLHAYDSGQKVLDMKVIVGQEYEDKATPVFSDSMEYVVFRPYWNVTPDIAAKEIFPKEEANPGYLAANDMEVYNDHGRQAIRQRPGPKNSLGLVKFMFPNDFNIYLHDTPNDELFNKDVRAFSHGCIRVEKPAELAQWVLGWPADRVQQAMHDGPDDRTVKLPRKIPVYIVYFTTFVENGALHFGNDLYDRDSQLVNALQNVAMPSAATIGAQKELRALAGG

Samples

Sample ID Description Type Environment
1 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
2 3300004799 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
3 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
9 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
10 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
11 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
12 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
13 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
14 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
15 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
16 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
17 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
18 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
19 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
20 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
21 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
22 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
23 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
24 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
25 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
26 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
27 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
28 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
29 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
30 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
31 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
32 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
33 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
34 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
35 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
36 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
37 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
38 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
39 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
40 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
41 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
42 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
43 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
44 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
45 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
46 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
47 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
48 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
49 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
50 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
51 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
52 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
53 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
54 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
55 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
56 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
57 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
58 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
59 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
60 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
61 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
62 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
63 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
64 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
65 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300027543 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes) (version 2) Metagenome Rhizosphere
98 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
101 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
102 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
103 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
104 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
105 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
106 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
107 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
108 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
109 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
110 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
111 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
112 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
113 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
114 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
115 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
116 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
117 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
118 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
119 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
120 3300038996 Genetically engineered switchgrass root microbial communities from Knoxville, USA - plot19 Metagenome Rhizosphere
121 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
122 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
123 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
124 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
125 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
126 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
127 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
128 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
129 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
130 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
131 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
132 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
133 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
134 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
135 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
136 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
137 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
138 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
139 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
140 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
141 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
142 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
143 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
144 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
145 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
146 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
147 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
148 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
149 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
150 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
151 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
152 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
153 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
154 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
155 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
156 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
157 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
158 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
159 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
160 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
161 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
162 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
163 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
164 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
165 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
166 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
167 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
168 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
169 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
170 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
171 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.69
Metatranscriptomes 0.31
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.23
Rhizosphere 98.77
Stem 0
Stem Tuber 0
Unclassified 5.21

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466967_0031129 3300045976 Bacteria 4488
2 Ga0058863_10039553 3300004799 Bacteria 2994
3 Ga0065715_10001150 3300005293 Bacteria 7257
4 Ga0070658_10009726 3300005327 Bacteria 7722
5 Ga0070658_10016396 3300005327 Bacteria 5929
6 Ga0070658_10065009 3300005327 Unclassified 2976
7 Ga0070676_10025672 3300005328 Bacteria 3332
8 Ga0070683_100000665 3300005329 Bacteria 24844
9 Ga0070683_100004113 3300005329 Bacteria 11919
10 Ga0070683_100019588 3300005329 Bacteria 6011
11 Ga0070683_100022500 3300005329 Bacteria 5633
12 Ga0070683_100026207 3300005329 Bacteria 5246
13 Ga0070670_100022087 3300005331 Bacteria 5477
14 Ga0070680_100002217 3300005336 Bacteria 14323
15 Ga0070680_100005281 3300005336 Bacteria 9766
16 Ga0070680_100018085 3300005336 Bacteria 5567
17 Ga0070680_100020108 3300005336 Bacteria 5295
18 Ga0070680_100036872 3300005336 Bacteria 3950
19 Ga0070680_100038506 3300005336 Bacteria 3867
20 Ga0070680_100038779 3300005336 Bacteria 3854
21 Ga0070680_100101392 3300005336 Bacteria 2389
22 Ga0070680_100110964 3300005336 Bacteria 2283
23 Ga0070682_100000424 3300005337 Bacteria 27349
24 Ga0070682_100001217 3300005337 Bacteria 14649
25 Ga0070682_100010879 3300005337 Bacteria 5181
26 Ga0068868_100058565 3300005338 Bacteria 3045
27 Ga0068868_100119521 3300005338 Bacteria 2148
28 Ga0070660_100003122 3300005339 Bacteria 11379
29 Ga0070689_100021528 3300005340 Bacteria 4802
30 Ga0070687_100035037 3300005343 Unclassified 2489
31 Ga0070661_100010778 3300005344 Bacteria 6364
32 Ga0070661_100012818 3300005344 Bacteria 5871
33 Ga0070692_10006865 3300005345 Bacteria 4974
34 Ga0070692_10026815 3300005345 Bacteria 2852
35 Ga0070692_10055829 3300005345 Bacteria 2066
36 Ga0070688_100021187 3300005365 Bacteria 3793
37 Ga0070659_100002741 3300005366 Bacteria 12533
38 Ga0070659_100012386 3300005366 Bacteria 6324
39 Ga0070714_100057833 3300005435 Bacteria 3320
40 Ga0070713_100004045 3300005436 Bacteria 9768
41 Ga0070713_100013690 3300005436 Bacteria 5996
42 Ga0070708_100000030 3300005445 Bacteria 96247
43 Ga0070708_100000398 3300005445 Bacteria 32920
44 Ga0070708_100008837 3300005445 Bacteria 8106
45 Ga0070708_100068997 3300005445 Bacteria 3178
46 Ga0070662_100010034 3300005457 Bacteria 6203
47 Ga0070662_100015473 3300005457 Bacteria 5111
48 Ga0070681_10000931 3300005458 Bacteria 24627
49 Ga0070681_10005248 3300005458 Bacteria 12517
50 Ga0070681_10006764 3300005458 Bacteria 11161
51 Ga0070681_10014985 3300005458 Bacteria 7708
52 Ga0070681_10069301 3300005458 Bacteria 3493
53 Ga0070681_10077728 3300005458 Bacteria 3276
54 Ga0070706_100024023 3300005467 Bacteria 5613
55 Ga0070706_100056005 3300005467 Unclassified 3639
56 Ga0070707_100001656 3300005468 Bacteria 21561
57 Ga0070707_100124940 3300005468 Unclassified 2499
58 Ga0070699_100025355 3300005518 Bacteria 5113
59 Ga0070699_100040748 3300005518 Bacteria 4020
60 Ga0070679_100000290 3300005530 Bacteria 42664
61 Ga0070679_100000588 3300005530 Bacteria 30785
62 Ga0070679_100002432 3300005530 Bacteria 16877
63 Ga0070679_100002578 3300005530 Bacteria 16459
64 Ga0070679_100005815 3300005530 Bacteria 11445
65 Ga0070679_100012096 3300005530 Bacteria 8243
66 Ga0070679_100016055 3300005530 Bacteria 7213
67 Ga0070679_100021201 3300005530 Bacteria 6340
68 Ga0070679_100061704 3300005530 Bacteria 3737
69 Ga0070684_100007793 3300005535 Bacteria 8352
70 Ga0070684_100012889 3300005535 Bacteria 6720
71 Ga0070684_100018342 3300005535 Bacteria 5763
72 Ga0070684_100019714 3300005535 Bacteria 5582
73 Ga0070684_100037059 3300005535 Bacteria 4180
74 Ga0070684_100120900 3300005535 Bacteria 2356
75 Ga0070697_100082978 3300005536 Bacteria 2643
76 Ga0068853_100069955 3300005539 Bacteria 3054
77 Ga0070686_100026088 3300005544 Bacteria 3523
78 Ga0070695_100029329 3300005545 Bacteria 3418
79 Ga0070696_100000092 3300005546 Bacteria 44449
80 Ga0070696_100026776 3300005546 Bacteria 3924
81 Ga0070696_100029243 3300005546 Bacteria 3764
82 Ga0070693_100001302 3300005547 Bacteria 11236
83 Ga0070693_100005207 3300005547 Bacteria 6224
84 Ga0070665_100071157 3300005548 Unclassified 3485
85 Ga0068855_100003158 3300005563 Bacteria 20168
86 Ga0068855_100007472 3300005563 Bacteria 13233
87 Ga0068855_100103109 3300005563 Bacteria 3282
88 Ga0068855_100183327 3300005563 Bacteria 2366
89 Ga0070664_100030181 3300005564 Bacteria 4523
90 Ga0070664_100037348 3300005564 Bacteria 4084
91 Ga0070664_100057541 3300005564 Unclassified 3305
92 Ga0068857_100075161 3300005577 Bacteria 3012
93 Ga0068856_100005656 3300005614 Bacteria 12303
94 Ga0068856_100048326 3300005614 Bacteria 4192
95 Ga0068856_100070165 3300005614 Bacteria 3466
96 Ga0070702_100004824 3300005615 Bacteria 6199
97 Ga0068852_100094083 3300005616 Bacteria 2687
98 Ga0068852_100110105 3300005616 Bacteria 2502
99 Ga0068852_100115482 3300005616 Unclassified 2447
100 Ga0068864_100019829 3300005618 Bacteria 5623
101 Ga0068866_10025268 3300005718 Bacteria 2790
102 Ga0068870_10008023 3300005840 Bacteria 4729
103 Ga0068863_100014979 3300005841 Bacteria 7447
104 Ga0068860_100131158 3300005843 Bacteria 2405
105 Ga0068862_100018042 3300005844 Bacteria 5877
106 Ga0081539_10000559 3300005985 Bacteria 76871
107 Ga0081539_10000863 3300005985 Bacteria 58055
108 Ga0070716_100000281 3300006173 Bacteria 20519
109 Ga0075430_100001369 3300006846 Bacteria 19763
110 Ga0075430_100029538 3300006846 Bacteria 4653
111 Ga0075430_100114389 3300006846 Unclassified 2248
112 Ga0075431_100110942 3300006847 Unclassified 2831
113 Ga0075431_100123627 3300006847 Bacteria 2670
114 Ga0075433_10023149 3300006852 Bacteria 5225
115 Ga0075434_100013899 3300006871 Bacteria 7680
116 Ga0068865_100009267 3300006881 Bacteria 6097
117 Ga0075436_100015176 3300006914 Bacteria 5277
118 Ga0105245_10011816 3300009098 Bacteria 7594
119 Ga0105245_10038021 3300009098 Bacteria 4280
120 Ga0105245_10205843 3300009098 Bacteria 1891
121 Ga0114129_10010214 3300009147 Bacteria 13386
122 Ga0105242_10010271 3300009176 Bacteria 7178
123 Ga0105248_10015943 3300009177 Bacteria 8276
124 Ga0105248_10045967 3300009177 Bacteria 4894
125 Ga0105248_10047302 3300009177 Bacteria 4824
126 Ga0105246_10011962 3300011119 Bacteria 5402
127 Ga0157374_10043740 3300013296 Bacteria 4138
128 Ga0157378_10004688 3300013297 Bacteria 11995
129 Ga0157372_10006284 3300013307 Bacteria 12635
130 Ga0157372_10011108 3300013307 Bacteria 9578
131 Ga0157372_10025721 3300013307 Bacteria 6403
132 Ga0157372_10028068 3300013307 Bacteria 6139
133 Ga0157372_10054701 3300013307 Bacteria 4454
134 Ga0157372_10084486 3300013307 Bacteria 3598
135 Ga0157372_10108331 3300013307 Bacteria 3179
136 Ga0157372_10156087 3300013307 Bacteria 2636
137 Ga0157372_10230320 3300013307 Bacteria 2148
138 Ga0157375_10017081 3300013308 Bacteria 6540
139 Ga0157375_10022036 3300013308 Bacteria 5859
140 Ga0157375_10220757 3300013308 Unclassified 2054
141 Ga0157375_10260514 3300013308 Unclassified 1896
142 Ga0163163_10026330 3300014325 Bacteria 5558
143 Ga0207699_10036750 3300025906 Bacteria 2795
144 Ga0207645_10003488 3300025907 Bacteria 11910
145 Ga0207643_10007855 3300025908 Bacteria 5726
146 Ga0207643_10033386 3300025908 Bacteria 2879
147 Ga0207705_10029462 3300025909 Bacteria 3913
148 Ga0207705_10106945 3300025909 Bacteria 2063
149 Ga0207684_10040114 3300025910 Bacteria 3969
150 Ga0207684_10055206 3300025910 Bacteria 3370
151 Ga0207707_10002772 3300025912 Bacteria 15626
152 Ga0207707_10008897 3300025912 Bacteria 8719
153 Ga0207707_10016337 3300025912 Bacteria 6475
154 Ga0207707_10019387 3300025912 Bacteria 5937
155 Ga0207707_10027537 3300025912 Bacteria 4970
156 Ga0207695_10020155 3300025913 Bacteria 7647
157 Ga0207693_10113547 3300025915 Bacteria 2125
158 Ga0207660_10000011 3300025917 Bacteria 89179
159 Ga0207660_10010544 3300025917 Bacteria 6001
160 Ga0207660_10012319 3300025917 Bacteria 5593
161 Ga0207660_10021859 3300025917 Bacteria 4305
162 Ga0207660_10042411 3300025917 Bacteria 3194
163 Ga0207660_10065389 3300025917 Bacteria 2628
164 Ga0207662_10018738 3300025918 Bacteria 3931
165 Ga0207662_10022845 3300025918 Bacteria 3590
166 Ga0207657_10003021 3300025919 Bacteria 18014
167 Ga0207649_10007980 3300025920 Bacteria 5758
168 Ga0207649_10016137 3300025920 Bacteria 4207
169 Ga0207652_10012602 3300025921 Bacteria 6834
170 Ga0207652_10017105 3300025921 Bacteria 5932
171 Ga0207652_10028862 3300025921 Bacteria 4631
172 Ga0207646_10012294 3300025922 Bacteria 8233
173 Ga0207646_10044901 3300025922 Unclassified 3966
174 Ga0207687_10014223 3300025927 Bacteria 5205
175 Ga0207706_10005346 3300025933 Bacteria 11968
176 Ga0207706_10006498 3300025933 Bacteria 10851
177 Ga0207670_10100648 3300025936 Bacteria 2063
178 Ga0207665_10001272 3300025939 Bacteria 17023
179 Ga0207711_10055422 3300025941 Bacteria 3404
180 Ga0207711_10158045 3300025941 Unclassified 2050
181 Ga0207661_10001639 3300025944 Bacteria 15246
182 Ga0207661_10002480 3300025944 Bacteria 12688
183 Ga0207661_10006126 3300025944 Bacteria 8497
184 Ga0207661_10007907 3300025944 Bacteria 7580
185 Ga0207661_10021427 3300025944 Bacteria 4842
186 Ga0207661_10032150 3300025944 Bacteria 4062
187 Ga0207679_10001909 3300025945 Bacteria 12933
188 Ga0207679_10031296 3300025945 Bacteria 3723
189 Ga0207667_10062109 3300025949 Bacteria 3907
190 Ga0207667_10150662 3300025949 Bacteria 2394
191 Ga0207651_10100667 3300025960 Bacteria 2143
192 Ga0207677_10020905 3300026023 Bacteria 3988
193 Ga0207677_10046542 3300026023 Bacteria 2906
194 Ga0207677_10048313 3300026023 Bacteria 2865
195 Ga0207639_10013743 3300026041 Bacteria 5677
196 Ga0207639_10026490 3300026041 Bacteria 4214
197 Ga0207639_10031894 3300026041 Bacteria 3875
198 Ga0207639_10057243 3300026041 Bacteria 2992
199 Ga0207702_10005606 3300026078 Bacteria 10955
200 Ga0207702_10029178 3300026078 Bacteria 4589
201 Ga0207648_10012197 3300026089 Bacteria 8050
202 Ga0207676_10018351 3300026095 Bacteria 5084
203 Ga0207674_10011485 3300026116 Bacteria 9949
204 Ga0207674_10046763 3300026116 Bacteria 4441
205 Ga0207675_100083563 3300026118 Bacteria 2995
206 Ga0207675_100176457 3300026118 Bacteria 2044
207 Ga0207683_10011062 3300026121 Bacteria 7689
208 Ga0207698_10004037 3300026142 Bacteria 8909
209 Ga0207698_10017735 3300026142 Bacteria 4838
210 Ga0207698_10023835 3300026142 Bacteria 4284
211 Ga0207698_10056472 3300026142 Bacteria 3032
212 Ga0209999_1002527 3300027543 Bacteria 3232
213 Ga0268265_10126428 3300028380 Bacteria 2116
214 Ga0268264_10017555 3300028381 Bacteria 5861
215 Ga0307409_100042273 3300031995 Bacteria 3412
216 Ga0307416_100005176 3300032002 Bacteria 7970
217 Ga0373926_0020995 3300035083 Bacteria 2259
218 Ga0373926_0026961 3300035083 Bacteria 2012
219 Ga0373934_0000388 3300035086 Bacteria 15369
220 Ga0373934_0017710 3300035086 Bacteria 2722
221 Ga0373944_0000665 3300035089 Bacteria 8201
222 Ga0373941_0001263 3300035115 Bacteria 5321
223 Ga0373945_0006642 3300035116 Bacteria 3737
224 Ga0373953_0000926 3300035117 Bacteria 8206
225 Ga0373956_0000130 3300035119 Bacteria 26574
226 Ga0373957_0008294 3300035120 Bacteria 3360
227 Ga0373943_0011690 3300035170 Bacteria 3951
228 Ga0373955_0000703 3300035172 Bacteria 14401
229 Ga0373942_0007571 3300035207 Bacteria 2521
230 Ga0373935_0017601 3300035692 Bacteria 4339
231 Ga0373927_0002420 3300035695 Bacteria 13605
232 Ga0373933_0000481 3300035724 Bacteria 24921
233 Ga0373947_0055472 3300035725 Bacteria 2393
234 Ga0373937_0000632 3300036401 Bacteria 30801
235 Ga0373937_0000712 3300036401 Bacteria 29001
236 Ga0373925_0001041 3300037068 Bacteria 25142
237 Ga0373925_0022551 3300037068 Bacteria 4593
238 Ga0373925_0226722 3300037068 Unclassified 1493
239 Ga0395905_0055074 3300037471 Bacteria 3723
240 Ga0242420_001178 3300038996 Bacteria 3399
241 Ga0466963_0051309 3300044694 Bacteria 2734
242 Ga0466967_0056720 3300045976 Bacteria 3455
243 Ga0495592_0001229 3300046454 Bacteria 17790
244 Ga0495603_0003629 3300046455 Bacteria 9179
245 Ga0495629_0003008 3300046459 Bacteria 12827
246 Ga0495629_0011092 3300046459 Bacteria 6548
247 Ga0495651_0002919 3300046462 Bacteria 13236
248 Ga0495651_0015038 3300046462 Bacteria 5982
249 Ga0495651_0022403 3300046462 Bacteria 4909
250 Ga0495651_0038800 3300046462 Bacteria 3709
251 Ga0495653_0000178 3300046463 Bacteria 52484
252 Ga0495653_0034508 3300046463 Bacteria 4001
253 Ga0495580_0004339 3300046472 Bacteria 11903
254 Ga0495639_0000506 3300046475 Bacteria 18404
255 Ga0495664_0052313 3300046477 Bacteria 2426
256 Ga0495594_0014887 3300046499 Unclassified 4082
257 Ga0495594_0020602 3300046499 Bacteria 3513
258 Ga0495594_0032592 3300046499 Bacteria 2829
259 Ga0495608_0001274 3300046511 Bacteria 17910
260 Ga0495628_0000892 3300046516 Bacteria 27494
261 Ga0495628_0030644 3300046516 Bacteria 4354
262 Ga0495630_0001771 3300046517 Bacteria 15106
263 Ga0495630_0009420 3300046517 Bacteria 7020
264 Ga0495652_0001646 3300046529 Bacteria 24360
265 Ga0495652_0053703 3300046529 Bacteria 3433
266 Ga0495665_0021871 3300046531 Bacteria 3439
267 Ga0495665_0029051 3300046531 Bacteria 2963
268 Ga0495586_0006478 3300046535 Bacteria 6250
269 Ga0495586_0043167 3300046535 Bacteria 2429
270 Ga0495587_0000711 3300046536 Bacteria 22258
271 Ga0495587_0020413 3300046536 Bacteria 4091
272 Ga0495587_0035348 3300046536 Bacteria 3009
273 Ga0495645_0000397 3300046543 Bacteria 30171
274 Ga0495645_0001384 3300046543 Bacteria 16384
275 Ga0495645_0010131 3300046543 Bacteria 6603
276 Ga0495645_0029390 3300046543 Bacteria 3997
277 Ga0495667_0003801 3300046559 Bacteria 10133
278 Ga0495667_0010966 3300046559 Bacteria 6124
279 Ga0495635_0000542 3300046663 Bacteria 24035
280 Ga0495588_0000681 3300046674 Bacteria 15683
281 Ga0495657_0000696 3300046675 Bacteria 30180
282 Ga0495599_0010873 3300046678 Bacteria 5578
283 Ga0495599_0023608 3300046678 Bacteria 3845
284 Ga0495599_0028731 3300046678 Bacteria 3485
285 Ga0495623_0000403 3300046679 Bacteria 28543
286 Ga0495646_0001729 3300046680 Bacteria 13099
287 Ga0495658_0000653 3300046683 Bacteria 18782
288 Ga0495658_0006217 3300046683 Bacteria 5867
289 Ga0495658_0045528 3300046683 Bacteria 2462
290 Ga0495613_0023833 3300046689 Unclassified 4560
291 Ga0495613_0040223 3300046689 Bacteria 3465
292 Ga0495600_0000188 3300046809 Bacteria 35910
293 Ga0495600_0024704 3300046809 Bacteria 3869
294 Ga0495581_0063495 3300047315 Bacteria 2134
295 Ga0495581_0075048 3300047315 Bacteria 1956
296 Ga0495604_0001762 3300047317 Bacteria 17689
297 Ga0495604_0001957 3300047317 Bacteria 16625
298 Ga0495604_0032143 3300047317 Bacteria 4161
299 Ga0495674_0003182 3300047319 Bacteria 15949
300 Ga0495672_0001992 3300047320 Bacteria 19304
301 Ga0495680_0031019 3300047322 Bacteria 4355
302 Ga0495680_0142148 3300047322 Bacteria 1755
303 Ga0495675_0010647 3300047444 Bacteria 5751
304 Ga0495675_0041829 3300047444 Bacteria 2920
305 Ga0495675_0046877 3300047444 Bacteria 2751
306 Ga0495684_0000290 3300047471 Bacteria 40756
307 Ga0495684_0034654 3300047471 Bacteria 3872
308 Ga0495593_0000940 3300047673 Bacteria 16976
309 Ga0495602_0000755 3300048088 Bacteria 30720
310 Ga0495602_0018489 3300048088 Bacteria 6958
311 Ga0496108_0045785 3300048911 Bacteria 3654
312 Ga0496109_0114494 3300048912 Unclassified 2509
313 Ga0496112_0000379 3300048915 Bacteria 29146
314 Ga0496112_0064060 3300048915 Bacteria 3626
315 Ga0501033_0019494 3300049570 Bacteria 5128
316 Ga0501036_0074592 3300049572 Bacteria 2869
317 Ga0501038_0011540 3300049574 Bacteria 8061
318 Ga0501043_0033647 3300049579 Bacteria 4033
319 Ga0501035_0027380 3300049822 Bacteria 5211
320 Ga0501044_0011305 3300049823 Bacteria 9675
321 nmdc:mga09592_68103_c1 3300050508 Bacteria 3019
322 nmdc:mga0qj67_42329_c1 3300050509 Bacteria 3585
323 nmdc:mga0qj67_83026_c1 3300050509 Bacteria 2569
324 nmdc:mga08x19_5575_c1 3300050514 Bacteria 7446
325 Ga0495601_0052659 3300053077 Bacteria 2571
326 Ga0495619_0013318 3300053085 Bacteria 5181
327 Ga0466967_0031129
328 Ga0058863_10039553
329 Ga0065715_10001150
330 Ga0070658_10009726
331 Ga0070658_10016396
332 Ga0070658_10065009
333 Ga0070676_10025672
334 Ga0070683_100000665
335 Ga0070683_100004113
336 Ga0070683_100019588
337 Ga0070683_100022500
338 Ga0070683_100026207
339 Ga0070670_100022087
340 Ga0070680_100002217
341 Ga0070680_100005281
342 Ga0070680_100018085
343 Ga0070680_100020108
344 Ga0070680_100036872
345 Ga0070680_100038506
346 Ga0070680_100038779
347 Ga0070680_100101392
348 Ga0070680_100110964
349 Ga0070682_100000424
350 Ga0070682_100001217
351 Ga0070682_100010879
352 Ga0068868_100058565
353 Ga0068868_100119521
354 Ga0070660_100003122
355 Ga0070689_100021528
356 Ga0070687_100035037
357 Ga0070661_100010778
358 Ga0070661_100012818
359 Ga0070692_10006865
360 Ga0070692_10026815
361 Ga0070692_10055829
362 Ga0070688_100021187
363 Ga0070659_100002741
364 Ga0070659_100012386
365 Ga0070714_100057833
366 Ga0070713_100004045
367 Ga0070713_100013690
368 Ga0070708_100000030
369 Ga0070708_100000398
370 Ga0070708_100008837
371 Ga0070708_100068997
372 Ga0070662_100010034
373 Ga0070662_100015473
374 Ga0070681_10000931
375 Ga0070681_10005248
376 Ga0070681_10006764
377 Ga0070681_10014985
378 Ga0070681_10069301
379 Ga0070681_10077728
380 Ga0070706_100024023
381 Ga0070706_100056005
382 Ga0070707_100001656
383 Ga0070707_100124940
384 Ga0070699_100025355
385 Ga0070699_100040748
386 Ga0070679_100000290
387 Ga0070679_100000588
388 Ga0070679_100002432
389 Ga0070679_100002578
390 Ga0070679_100005815
391 Ga0070679_100012096
392 Ga0070679_100016055
393 Ga0070679_100021201
394 Ga0070679_100061704
395 Ga0070684_100007793
396 Ga0070684_100012889
397 Ga0070684_100018342
398 Ga0070684_100019714
399 Ga0070684_100037059
400 Ga0070684_100120900
401 Ga0070697_100082978
402 Ga0068853_100069955
403 Ga0070686_100026088
404 Ga0070695_100029329
405 Ga0070696_100000092
406 Ga0070696_100026776
407 Ga0070696_100029243
408 Ga0070693_100001302
409 Ga0070693_100005207
410 Ga0070665_100071157
411 Ga0068855_100003158
412 Ga0068855_100007472
413 Ga0068855_100103109
414 Ga0068855_100183327
415 Ga0070664_100030181
416 Ga0070664_100037348
417 Ga0070664_100057541
418 Ga0068857_100075161
419 Ga0068856_100005656
420 Ga0068856_100048326
421 Ga0068856_100070165
422 Ga0070702_100004824
423 Ga0068852_100094083
424 Ga0068852_100110105
425 Ga0068852_100115482
426 Ga0068864_100019829
427 Ga0068866_10025268
428 Ga0068870_10008023
429 Ga0068863_100014979
430 Ga0068860_100131158
431 Ga0068862_100018042
432 Ga0081539_10000559
433 Ga0081539_10000863
434 Ga0070716_100000281
435 Ga0075430_100001369
436 Ga0075430_100029538
437 Ga0075430_100114389
438 Ga0075431_100110942
439 Ga0075431_100123627
440 Ga0075433_10023149
441 Ga0075434_100013899
442 Ga0068865_100009267
443 Ga0075436_100015176
444 Ga0105245_10011816
445 Ga0105245_10038021
446 Ga0105245_10205843
447 Ga0114129_10010214
448 Ga0105242_10010271
449 Ga0105248_10015943
450 Ga0105248_10045967
451 Ga0105248_10047302
452 Ga0105246_10011962
453 Ga0157374_10043740
454 Ga0157378_10004688
455 Ga0157372_10006284
456 Ga0157372_10011108
457 Ga0157372_10025721
458 Ga0157372_10028068
459 Ga0157372_10054701
460 Ga0157372_10084486
461 Ga0157372_10108331
462 Ga0157372_10156087
463 Ga0157372_10230320
464 Ga0157375_10017081
465 Ga0157375_10022036
466 Ga0157375_10220757
467 Ga0157375_10260514
468 Ga0163163_10026330
469 Ga0207699_10036750
470 Ga0207645_10003488
471 Ga0207643_10007855
472 Ga0207643_10033386
473 Ga0207705_10029462
474 Ga0207705_10106945
475 Ga0207684_10040114
476 Ga0207684_10055206
477 Ga0207707_10002772
478 Ga0207707_10008897
479 Ga0207707_10016337
480 Ga0207707_10019387
481 Ga0207707_10027537
482 Ga0207695_10020155
483 Ga0207693_10113547
484 Ga0207660_10000011
485 Ga0207660_10010544
486 Ga0207660_10012319
487 Ga0207660_10021859
488 Ga0207660_10042411
489 Ga0207660_10065389
490 Ga0207662_10018738
491 Ga0207662_10022845
492 Ga0207657_10003021
493 Ga0207649_10007980
494 Ga0207649_10016137
495 Ga0207652_10012602
496 Ga0207652_10017105
497 Ga0207652_10028862
498 Ga0207646_10012294
499 Ga0207646_10044901
500 Ga0207687_10014223
501 Ga0207706_10005346
502 Ga0207706_10006498
503 Ga0207670_10100648
504 Ga0207665_10001272
505 Ga0207711_10055422
506 Ga0207711_10158045
507 Ga0207661_10001639
508 Ga0207661_10002480
509 Ga0207661_10006126
510 Ga0207661_10007907
511 Ga0207661_10021427
512 Ga0207661_10032150
513 Ga0207679_10001909
514 Ga0207679_10031296
515 Ga0207667_10062109
516 Ga0207667_10150662
517 Ga0207651_10100667
518 Ga0207677_10020905
519 Ga0207677_10046542
520 Ga0207677_10048313
521 Ga0207639_10013743
522 Ga0207639_10026490
523 Ga0207639_10031894
524 Ga0207639_10057243
525 Ga0207702_10005606
526 Ga0207702_10029178
527 Ga0207648_10012197
528 Ga0207676_10018351
529 Ga0207674_10011485
530 Ga0207674_10046763
531 Ga0207675_100083563
532 Ga0207675_100176457
533 Ga0207683_10011062
534 Ga0207698_10004037
535 Ga0207698_10017735
536 Ga0207698_10023835
537 Ga0207698_10056472
538 Ga0209999_1002527
539 Ga0268265_10126428
540 Ga0268264_10017555
541 Ga0307409_100042273
542 Ga0307416_100005176
543 Ga0373926_0020995
544 Ga0373926_0026961
545 Ga0373934_0000388
546 Ga0373934_0017710
547 Ga0373944_0000665
548 Ga0373941_0001263
549 Ga0373945_0006642
550 Ga0373953_0000926
551 Ga0373956_0000130
552 Ga0373957_0008294
553 Ga0373943_0011690
554 Ga0373955_0000703
555 Ga0373942_0007571
556 Ga0373935_0017601
557 Ga0373927_0002420
558 Ga0373933_0000481
559 Ga0373947_0055472
560 Ga0373937_0000632
561 Ga0373937_0000712
562 Ga0373925_0001041
563 Ga0373925_0022551
564 Ga0373925_0226722
565 Ga0395905_0055074
566 Ga0242420_001178
567 Ga0466963_0051309
568 Ga0466967_0056720
569 Ga0495592_0001229
570 Ga0495603_0003629
571 Ga0495629_0003008
572 Ga0495629_0011092
573 Ga0495651_0002919
574 Ga0495651_0015038
575 Ga0495651_0022403
576 Ga0495651_0038800
577 Ga0495653_0000178
578 Ga0495653_0034508
579 Ga0495580_0004339
580 Ga0495639_0000506
581 Ga0495664_0052313
582 Ga0495594_0014887
583 Ga0495594_0020602
584 Ga0495594_0032592
585 Ga0495608_0001274
586 Ga0495628_0000892
587 Ga0495628_0030644
588 Ga0495630_0001771
589 Ga0495630_0009420
590 Ga0495652_0001646
591 Ga0495652_0053703
592 Ga0495665_0021871
593 Ga0495665_0029051
594 Ga0495586_0006478
595 Ga0495586_0043167
596 Ga0495587_0000711
597 Ga0495587_0020413
598 Ga0495587_0035348
599 Ga0495645_0000397
600 Ga0495645_0001384
601 Ga0495645_0010131
602 Ga0495645_0029390
603 Ga0495667_0003801
604 Ga0495667_0010966
605 Ga0495635_0000542
606 Ga0495588_0000681
607 Ga0495657_0000696
608 Ga0495599_0010873
609 Ga0495599_0023608
610 Ga0495599_0028731
611 Ga0495623_0000403
612 Ga0495646_0001729
613 Ga0495658_0000653
614 Ga0495658_0006217
615 Ga0495658_0045528
616 Ga0495613_0023833
617 Ga0495613_0040223
618 Ga0495600_0000188
619 Ga0495600_0024704
620 Ga0495581_0063495
621 Ga0495581_0075048
622 Ga0495604_0001762
623 Ga0495604_0001957
624 Ga0495604_0032143
625 Ga0495674_0003182
626 Ga0495672_0001992
627 Ga0495680_0031019
628 Ga0495680_0142148
629 Ga0495675_0010647
630 Ga0495675_0041829
631 Ga0495675_0046877
632 Ga0495684_0000290
633 Ga0495684_0034654
634 Ga0495593_0000940
635 Ga0495602_0000755
636 Ga0495602_0018489
637 Ga0496108_0045785
638 Ga0496109_0114494
639 Ga0496112_0000379
640 Ga0496112_0064060
641 Ga0501033_0019494
642 Ga0501036_0074592
643 Ga0501038_0011540
644 Ga0501043_0033647
645 Ga0501035_0027380
646 Ga0501044_0011305
647 nmdc:mga09592_68103_c1
648 nmdc:mga0qj67_42329_c1
649 nmdc:mga0qj67_83026_c1
650 nmdc:mga08x19_5575_c1
651 Ga0495601_0052659
652 Ga0495619_0013318

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF20142

Scaffold

Scaffold domain

123

267

0.92

PF01471

PG_binding_1

Putative peptidoglycan binding domain

296

355

0.91

PF03734

YkuD

L,D-transpeptidase catalytic domain

382

562

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
5tv7-assembly2.cif.gz_B 2.05 angstrom resolution crystal structure of peptidoglycan-binding protein from clostridioides difficile in complex with glutamine hydroxamate. 0.8442 237 329
4c2g-assembly1.cif.gz_A-2 crystal structure of ctpb(s309a) in complex with a peptide having a val-pro-ala c-terminus 0.842 231 329
4c2e-assembly1.cif.gz_B crystal structure of the protease ctpb(s309a) present in a resting state 0.8132 227 329
4c2h-assembly1.cif.gz_B crystal structure of the ctpb(v118y) mutant 0.8045 227 329
7kgm-assembly1.cif.gz_A c. rodentium ycbb - ertapenem complex 0.7117 39 576
ID Description Score Start End Superfamily
af_L7N653_5_90_1.10.101.10 Mainly Alpha;Orthogonal Bundle;Muramoyl-pentapeptide Carboxypeptidase; domain 1;PGBD-like superfamily/PGBD 0.7677 236 328 1.10.101.10
af_P75954_98_241_2.40.440.10 Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like 0.7156 352 532 2.40.440.10
af_P75954_98_241_2.40.440.10 Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like 0.7111 352 532 2.40.440.10
af_Q8N119_44_329_3.40.390.10 Alpha Beta;3-Layer(aba) Sandwich;Collagenase (Catalytic Domain);Collagenase (Catalytic Domain) 0.6901 251 327 3.40.390.10
af_L7N653_5_90_1.10.101.10 Mainly Alpha;Orthogonal Bundle;Muramoyl-pentapeptide Carboxypeptidase; domain 1;PGBD-like superfamily/PGBD 0.6677 236 328 1.10.101.10
ID Description Score Start End GO Terms
AF-A0A512NHU7-F1-model_v4 L,D-TPase catalytic domain-containing protein 0.9159 353 550 GO:0004180
GO:0008360
GO:0009252
GO:0016740
GO:0071555
AF-A0A258FS06-F1-model_v4 L,D-TPase catalytic domain-containing protein 0.9093 321 559 GO:0004180
GO:0008360
GO:0009252
GO:0016740
GO:0071555
AF-A0A7X6U2R5-F1-model_v4 L,D-transpeptidase family protein 0.9077 374 559 GO:0004180
GO:0008360
GO:0009252
GO:0016740
GO:0071555
AF-A0A6N7ZV43-F1-model_v4 L,D-transpeptidase 0.9056 337 552 GO:0004180
GO:0008360
GO:0009252
GO:0016740
GO:0071555
AF-A0A1M6PDG1-F1-model_v4 L,D-transpeptidase catalytic domain 0.9047 336 553 GO:0004180
GO:0008360
GO:0009252
GO:0016740
GO:0071555

Map