F401958

General Info

Members Datasets Scaffolds Average Seq Length
312 241 197 335

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2979089926|2979092915
Length 389
Sequence PLPFVVALLLVVMFIVFFRGAEDMRTNRAFLALIALCAVQSVLVGLRWGYGVSEARYVLPVLAACLPPLVYIAFRGLMGVGVESRRAMFASLVLSPFFVVFLEFVLPVAIDFALIVIFVGHAIALLLLARKGPDGLDEAQFASVASAHKALIVAAVALCVSAFFDLLVFFDFEWAHGENVAALVSNANLLGLLLIGLMAALAGKSKAPQTAAQPAAELSSPAPSQQDRDVVERLDRLMETHTLYRDENLNLSRLAKRLGLPSRQISGAINRSLGVNVSQYVNQLRIREACRLLEETDQSVTAIMLSSGFQTKSNFNREFRRVTGMSPMDWREREVWKLVSNTKTGHPADAGWPFEDPEMRIRACRCAAGSSYRCHRYIRRSVPRDRRPS

Samples

Sample ID Description Type Environment
1 2509276022 Mesorhizobium australicum WSM2073 Isolate Nodule
2 2510917022 Rhizobium sp. AP16 Isolate Rhizosphere
3 2512875024 Mesorhizobium loti R88b Isolate Nodule
4 2513237140 Sinorhizobium meliloti GVPV12 Isolate Nodule
5 2516143018 Ensifer sp. BR816 Isolate Nodule
6 2524023209 Rhizobium leucaenae USDA 9039 Isolate Nodule
7 2537561587 Agrobacterium tumefaciens Cherry 2E-2-2 Isolate Rhizosphere
8 2554235003 Agrobacterium tumefaciens WRT31 Isolate Rhizosphere
9 2558860242 Agrobacterium fabacearum P4 Isolate Rhizosphere
10 2582581283 Rhizobium sp. OK665 Isolate Rhizosphere
11 2582581307 Rhizobium sp. YR060 Isolate Rhizosphere
12 2582581308 Rhizobium sp. OK494 Isolate Rhizosphere
13 2582581315 Agrobacterium rhizogenes YR147 Isolate Rhizosphere
14 2582581316 Agrobacterium rhizogenes OK036 Isolate Rhizosphere
15 2585427527 Rhizobium lusitanum YR374 Isolate Rhizosphere
16 2585427530 Rhizobium tropici YR635 Isolate Rhizosphere
17 2585427531 Agrobacterium rhizogenes YR530 Isolate Rhizosphere
18 2585427608 Agrobacterium rhizogenes OV677 Isolate Rhizosphere
19 2585427609 Agrobacterium rhizogenes CF263 Isolate Rhizosphere
20 2585428125 Agrobacterium rhizogenes CF262 Isolate Rhizosphere
21 2599185352 Sinorhizobium sp. NFACC03 Isolate Rhizoplane
22 2600255308 Rhizobium sp. NFIX02 Isolate Rhizoplane
23 2615840626 Rhizobium lusitanum P1-7 Isolate Nodule
24 2615840698 Rhizobium multihospitium HAMBI 2975 Isolate Nodule
25 2643221557 Ensifer sp. Root558 Isolate Unclassified
26 2643221582 Rhizobium sp. Root651 Isolate Unclassified
27 2643221607 Rhizobium sp. Root73 Isolate Unclassified
28 2643221610 Ensifer sp. Root74 Isolate Unclassified
29 2643221623 Aminobacter sp. DSM 101952 Root100 Isolate Unclassified
30 2643221636 Rhizobium sp. Root1204 Isolate Unclassified
31 2643221668 Ensifer sp. Root423 Isolate Unclassified
32 2643221675 Ensifer sp. Root1298 Isolate Unclassified
33 2643221680 Ensifer sp. Root1312 Isolate Unclassified
34 2643221686 Rhizobium sp. Root1334 Isolate Unclassified
35 2643221689 Rhizobium sp. Root483D2 Isolate Unclassified
36 2643221693 Rhizobium sp. Root491 Isolate Unclassified
37 2643221723 Ensifer sp. Root278 Isolate Unclassified
38 2643221726 Ensifer sp. Root954 Isolate Unclassified
39 2667528174 Rhizobium sp. NFR17 Isolate Rhizoplane
40 2751185800 Brucella pituitosa AA2 Isolate Unclassified
41 2757320392 Phyllobacterium leguminum ORS 1419 Isolate Nodule
42 2758568016 [Ochrobactrum] quorumnocens A44 Isolate Rhizosphere
43 2775507266 Rhizobium tropici PRF 81 Isolate Nodule
44 2791355091 Sinorhizobium sp. FG01 Isolate Nodule
45 2791355092 Sinorhizobium sp. NG07B Isolate Nodule
46 2808606387 Rhizobium sp. SJZ105 Isolate Rhizosphere
47 2818991439 Agrobacterium tumefaciens 1187 Isolate Unclassified
48 2818991448 Rhizobium miluonense 1234 Isolate Unclassified
49 2818991453 Rhizobium lusitanum 1158 Isolate Unclassified
50 2838029111 Rhizobium tropici SEMIA 4079 Isolate Nodule
51 2838675328 Agrobacterium radiobacter SEMIA 410 Isolate Nodule
52 2838714209 Agrobacterium radiobacter SEMIA 435 Isolate Nodule
53 2838719591 Agrobacterium radiobacter SEMIA 436 Isolate Nodule
54 2838724970 Agrobacterium radiobacter SEMIA 437 Isolate Nodule
55 2841846520 Agrobacterium radiobacter SEMIA 440 Isolate Nodule
56 2842124991 Agrobacterium radiobacter SEMIA 434 Isolate Nodule
57 2842130223 Agrobacterium radiobacter SEMIA 441 Isolate Nodule
58 2842152218 Agrobacterium radiobacter SEMIA 457 Isolate Nodule
59 2842170452 Agrobacterium radiobacter SEMIA 461 Isolate Nodule
60 2842175837 Agrobacterium radiobacter SEMIA 462 Isolate Nodule
61 2842187318 Agrobacterium radiobacter SEMIA 464 Isolate Nodule
62 2842211629 Agrobacterium radiobacter SEMIA 472 Isolate Nodule
63 2842224351 Agrobacterium radiobacter SEMIA 480 Isolate Nodule
64 2842298080 Rhizobium leucaenae SEMIA 492 Isolate Nodule
65 2842357229 Rhizobium leucaenae SEMIA 4015 Isolate Nodule
66 2842475841 Rhizobium tropici SEMIA 4059 Isolate Nodule
67 2842482326 Rhizobium lusitanum SEMIA 4060 Isolate Nodule
68 2842502639 Rhizobium tropici SEMIA 4063 Isolate Nodule
69 2842509118 Rhizobium paranaense SEMIA 4064 Isolate Nodule
70 2842515876 Agrobacterium radiobacter SEMIA 4072 Isolate Nodule
71 2847670302 Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 Isolate Nodule
72 2854911287 Brucella lupini LUP21 Isolate Unclassified
73 2856314179 Mesorhizobium sp. M3A.F.Ca.ET.175.01.1.1 Isolate Nodule
74 2878035449 Mesorhizobium sp. M3A.F.Ca.ET.201.01.1.1 Isolate Nodule
75 2882632389 Mesorhizobium waimense ICMP19557 Isolate Unclassified
76 2889016732 Mesorhizobium sp. M2A.F.Ca.ET.043.02.1.1 Isolate Nodule
77 2899792073 Agrobacterium deltaense CNPSo 3391 Isolate Nodule
78 2899845264 Agrobacterium fabacearum CNPSo 675 Isolate Unclassified
79 2906354277 Mesorhizobium sp. M2A.F.Ca.ET.040.01.1.1 Isolate Nodule
80 2906414383 Mesorhizobium sp. M3A.F.Ca.ET.174.01.1.1 Isolate Nodule
81 2919114240 Agrobacterium tumefaciens 1457 Isolate Rhizosphere
82 2919408235 Rhizobium miluonense 3199 Isolate Unclassified
83 2926754445 Agrobacterium radiobacter SLBN-94 Isolate Rhizosphere
84 2926760298 Agrobacterium tumefaciens SLBN-170 Isolate Rhizosphere
85 2929138655 Agrobacterium sp. R-72433 Hybrid assembly Isolate Unclassified
86 2933006813 Rhizobium sp. SEMIA 439 Isolate Unclassified
87 2933011516 Rhizobium sp. SEMIA 4032 Isolate Unclassified
88 2933594066 Agrobacterium fabrum 35/80 Isolate Nodule
89 2958172287 Mesorhizobium sp. M2A.F.Ca.ET.029.05.1.1 Isolate Nodule
90 2965119406 Mesorhizobium sp. M2A.F.Ca.ET.067.02.1.1 Isolate Nodule
91 2970489779 Mesorhizobium sp. M7A.F.Ca.US.008.03.1.1 Isolate Nodule
92 2977971508 Mesorhizobium sp. M2A.F.Ca.ET.039.01.1.1 Isolate Nodule
93 2979089926 Agrobacterium sp. SORGH_AS 745 Isolate Unclassified
94 2979095461 Agrobacterium tumefaciens SORGH_AS 749 Isolate Unclassified
95 2979100975 Agrobacterium pusense SORGH_AS 755 Isolate Unclassified
96 2979710463 Mesorhizobium sp. M2A.F.Ca.ET.017.03.2.1 Isolate Nodule
97 2984509177 Agrobacterium pusense SORGH_AS260 Isolate Aerial Root
98 2984518228 Agrobacterium pusense SORGH_AS285 Isolate Aerial Root
99 2984537506 Agrobacterium sp. SORGH_AS440 Isolate Aerial Root
100 2984601300 Rhizobium pusense SORGH_AS1083 Isolate Aerial Root
101 2989349275 Shinella kummerowiae CCBAU 25048 Isolate Unclassified
102 2989771324 Rhizobium rhizolycopersici DBTS2 Isolate Rhizosphere
103 3005416602 Rhizobium sp. P40RR-XXII Isolate Rhizosphere
104 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
105 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
106 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
107 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
108 3300002739 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA Metagenome Endosphere
109 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
110 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
111 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
112 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
113 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
114 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
115 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
116 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
117 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
118 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
119 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
120 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
121 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
122 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
123 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
124 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
125 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
126 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
127 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
128 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
129 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
130 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
131 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
132 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
133 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
134 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
135 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
136 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
137 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
138 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
139 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
140 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
141 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
142 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
143 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
144 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
145 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
146 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
147 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
148 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
149 3300013249 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.3_F06 Metagenome Rhizosphere
150 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
151 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
152 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
153 3300015690 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_D05 Metagenome Rhizosphere
154 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
155 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
156 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
157 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
158 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
159 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
160 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
161 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
162 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
163 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
164 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
165 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
166 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
167 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
168 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
169 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
170 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
171 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
172 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
173 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
174 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
175 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
176 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
177 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
178 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
179 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
180 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
181 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
182 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
183 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
184 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
185 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
186 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
187 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
188 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
189 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
190 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
191 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
192 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
193 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
194 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
195 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
196 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
197 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
198 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
199 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
200 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
201 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
202 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
203 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
204 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
205 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
206 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
207 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
208 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
209 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
210 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
211 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
212 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
213 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
214 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
215 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
216 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
217 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
218 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
219 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
220 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
221 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
222 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
223 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
224 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
225 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
226 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
227 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
228 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
229 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
230 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
231 643692032 Sinorhizobium fredii NGR234 Isolate Nodule
232 650716007 Agrobacterium fabacearum H13-3 Isolate Rhizosphere
233 8002285264 Aminobacter anthyllidis LMG 26462 Isolate Nodule
234 8003570095 Agrobacterium rhizogenes GBBC3284 Isolate Unclassified
235 8004640170 Mesorhizobium sp. GbtcB19 Isolate Unclassified
236 8005314921 Rhizobium sp. P28RR-XV Isolate Rhizosphere
237 8005484373 Rhizobium tropici SARCC-755 Isolate Nodule
238 8005645114 Rhizobium tropici IGFRI Rhizo-19 Isolate Rhizosphere
239 8005682033 Rhizobium dioscoreae S-93 Isolate Unclassified
240 8054460903 Agrobacterium vaccinii B7.6 Isolate Unclassified
241 8054558443 Rhizobium alarense TRM95111 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 63.14
Metatranscriptomes 0
Isolates 36.86

Biome Distribution

Category Percentage (%)
Aerial Root 1.28
Bulb 0
Endosphere 28.53
Nodule 15.71
Rhizoplane 2.24
Rhizosphere 25.32
Stem 0
Stem Tuber 0
Unclassified 26.92

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25155J39150_1000016 3300002704 Bacteria 163128
2 JGI25156J39149_1000018 3300002705 Bacteria 163121
3 JGI25156J39149_1000046 3300002705 Bacteria 102206
4 JGI25162J39368_1000617 3300002737 Bacteria 25480
5 JGI25154J39366_1000018 3300002738 Bacteria 251612
6 JGI25158J39367_1006284 3300002739 Bacteria 1709
7 JGI25157J39369_1000022 3300002741 Bacteria 163121
8 JGI25157J39369_1000215 3300002741 Bacteria 47335
9 JGI25152J39213_1005879 3300002773 Bacteria 3469
10 JGI25159J45721_1000005 3300002987 Bacteria 214315
11 JGI25151J46595_10000538 3300003187 Bacteria 35130
12 JGI25151J46595_10001632 3300003187 Bacteria 14781
13 JGI25151J46595_10021453 3300003187 Bacteria 2702
14 JGI25165J46597_1000068 3300003214 Bacteria 196201
15 JGI25165J46597_1000416 3300003214 Bacteria 44195
16 JGI25153J46596_10003684 3300003215 Bacteria 8474
17 rootH2_10057199 3300003320 Bacteria 16881
18 rootL2_10027389 3300003322 Bacteria 12430
19 rootH1_10061136 3300003323 Bacteria 12815
20 rootH1_10261931 3300003323 Bacteria 3122
21 JGI25160J50197_1000005 3300003354 Bacteria 417280
22 JGI25160J50197_1000720 3300003354 Bacteria 18157
23 JGI25161J50226_1000392 3300003374 Bacteria 21922
24 Ga0055526_1000754 3300003771 Bacteria 24199
25 Ga0055526_1000859 3300003771 Bacteria 22635
26 Ga0055524_1000796 3300003775 Bacteria 20955
27 Ga0055524_1000839 3300003775 Bacteria 20158
28 Ga0055524_1027922 3300003775 Bacteria 1701
29 Ga0055528_1000157 3300003790 Bacteria 56936
30 Ga0055540_1000169 3300003792 Bacteria 64875
31 Ga0055540_1010290 3300003792 Bacteria 3125
32 Ga0055543_1000175 3300004625 Bacteria 53715
33 Ga0055543_1001296 3300004625 Bacteria 10274
34 Ga0065165_1000002 3300005262 Bacteria 444192
35 Ga0070668_100022426 3300005347 Bacteria 4773
36 Ga0070669_100062083 3300005353 Bacteria 2747
37 Ga0070665_100003012 3300005548 Bacteria 18172
38 Ga0070665_100012018 3300005548 Bacteria 8734
39 Ga0070665_100096423 3300005548 Bacteria 2962
40 Ga0070665_100188295 3300005548 Bacteria 2065
41 Ga0068854_100078127 3300005578 Bacteria 2437
42 Ga0068852_100073605 3300005616 Bacteria 3006
43 Ga0068861_100392213 3300005719 Bacteria 1230
44 Ga0081455_10172761 3300005937 Bacteria 1644
45 Ga0075365_10009753 3300006038 Bacteria 5547
46 Ga0075368_10000391 3300006042 Bacteria 12927
47 Ga0075368_10025013 3300006042 Bacteria 2290
48 Ga0075362_10002443 3300006177 Bacteria 6244
49 Ga0075367_10059913 3300006178 Bacteria 2268
50 Ga0075369_10013220 3300006186 Bacteria 3272
51 Ga0075366_10004708 3300006195 Bacteria 7343
52 Ga0075370_10001154 3300006353 Bacteria 11092
53 Ga0105240_10000217 3300009093 Bacteria 115649
54 Ga0105243_10126904 3300009148 Bacteria 2160
55 Ga0105248_10113466 3300009177 Bacteria 3056
56 Ga0105237_10000978 3300009545 Bacteria 38384
57 Ga0105239_10009668 3300010375 Bacteria 10844
58 Ga0105239_10010679 3300010375 Bacteria 10271
59 Ga0105246_10058075 3300011119 Bacteria 2680
60 Ga0157373_10042861 3300013100 Bacteria 3233
61 Ga0157371_10000004 3300013102 Bacteria 512593
62 Ga0157370_10005183 3300013104 Bacteria 14691
63 Ga0157370_10132803 3300013104 Bacteria 2322
64 Ga0171463_1002 3300013249 Bacteria 1274851
65 Ga0182008_10048166 3300014497 Bacteria 2117
66 Ga0182007_10004991 3300015262 Bacteria 5902
67 Ga0182005_1004046 3300015265 Bacteria 4812
68 Ga0183363_1359 3300015690 Bacteria 4997
69 Ga0209435_100017 3300025206 Bacteria 303699
70 Ga0209436_100152 3300025208 Bacteria 33252
71 Ga0209437_100067 3300025233 Bacteria 317685
72 Ga0209437_100104 3300025233 Bacteria 220736
73 Ga0209646_1000048 3300025246 Bacteria 303808
74 Ga0209026_1000035 3300025250 Bacteria 303808
75 Ga0209677_101291 3300025253 Bacteria 11146
76 Ga0209759_1000027 3300025256 Bacteria 303808
77 Ga0209129_1000231 3300025258 Bacteria 61668
78 Ga0209233_1000054 3300025261 Bacteria 439669
79 Ga0209233_1000088 3300025261 Bacteria 317980
80 Ga0209233_1000330 3300025261 Bacteria 48662
81 Ga0209673_1000385 3300025273 Bacteria 79491
82 Ga0209673_1000522 3300025273 Bacteria 62876
83 Ga0209130_1000010 3300025284 Bacteria 444920
84 Ga0209130_1011536 3300025284 Bacteria 2363
85 Ga0209676_1010842 3300025292 Bacteria 3743
86 Ga0209676_1017603 3300025292 Bacteria 2523
87 Ga0209676_1021377 3300025292 Bacteria 2175
88 Ga0209025_1000058 3300025294 Bacteria 311398
89 Ga0209025_1000060 3300025294 Bacteria 305017
90 Ga0209025_1000459 3300025294 Bacteria 79660
91 Ga0209564_1000025 3300025295 Bacteria 520535
92 Ga0209564_1000118 3300025295 Bacteria 205431
93 Ga0209758_1000366 3300025297 Bacteria 80263
94 Ga0209050_1003720 3300025298 Bacteria 10975
95 Ga0209050_1022689 3300025298 Bacteria 2240
96 Ga0209256_1000160 3300025299 Bacteria 138781
97 Ga0209256_1000342 3300025299 Bacteria 76053
98 Ga0209256_1001260 3300025299 Bacteria 27736
99 Ga0207426_1000036 3300025302 Bacteria 444920
100 Ga0207426_1000147 3300025302 Bacteria 190586
101 Ga0209051_1000418 3300025303 Bacteria 58817
102 Ga0209051_1003829 3300025303 Bacteria 9633
103 Ga0209051_1052803 3300025303 Bacteria 1340
104 Ga0209257_1006051 3300025304 Bacteria 8059
105 Ga0207695_10001205 3300025913 Bacteria 44411
106 Ga0207671_10000793 3300025914 Bacteria 40024
107 Ga0207711_10053086 3300025941 Bacteria 3476
108 Ga0207668_10040972 3300025972 Bacteria 3128
109 Ga0207675_100471162 3300026118 Bacteria 1247
110 Ga0209371_1003557 3300027312 Bacteria 7469
111 Ga0209813_10001432 3300027866 Bacteria 5390
112 Ga0268266_10005424 3300028379 Bacteria 11894
113 Ga0268266_10010370 3300028379 Bacteria 8146
114 Ga0268256_1003197 3300030500 Bacteria 7598
115 Ga0307409_100079130 3300031995 Bacteria 2648
116 Ga0395899_0000217 3300037312 Bacteria 80044
117 Ga0395900_0000270 3300037418 Bacteria 80046
118 Ga0395898_0000470 3300037466 Bacteria 80783
119 Ga0395905_0000253 3300037471 Bacteria 80046
120 Ga0395905_0006987 3300037471 Bacteria 11286
121 Ga0395901_0000285 3300038443 Bacteria 62844
122 Ga0466957_0018792 3300044842 Bacteria 4062
123 Ga0466967_0234903 3300045976 Bacteria 1747
124 Ga0495607_0044584 3300046501 Bacteria 2614
125 Ga0495643_0154842 3300046522 Bacteria 1132
126 Ga0495609_0040035 3300046538 Bacteria 2109
127 Ga0495633_0022603 3300046558 Bacteria 3126
128 Ga0495633_0096748 3300046558 Bacteria 1371
129 Ga0495668_0119119 3300046616 Bacteria 1444
130 Ga0495625_0094596 3300046660 Bacteria 2061
131 Ga0495588_0100400 3300046674 Bacteria 1520
132 Ga0495687_021678 3300047443 Bacteria 3101
133 Ga0495687_070788 3300047443 Bacteria 1399
134 Ga0496100_0013195 3300048903 Bacteria 4759
135 Ga0496101_0315908 3300048904 Bacteria 1225
136 Ga0496102_0421605 3300048905 Bacteria 1254
137 Ga0496113_0049164 3300048916 Bacteria 3140
138 Ga0496116_0014657 3300048919 Bacteria 6245
139 Ga0496116_0077446 3300048919 Bacteria 2077
140 Ga0496117_0000002 3300048920 Bacteria 2483758
141 Ga0496117_0002969 3300048920 Bacteria 20461
142 Ga0496118_0002844 3300048921 Bacteria 22597
143 Ga0496118_0013244 3300048921 Bacteria 7822
144 Ga0496118_0016840 3300048921 Bacteria 6680
145 Ga0496119_0003270 3300048922 Bacteria 16947
146 Ga0496119_0005479 3300048922 Bacteria 12138
147 Ga0496119_0008586 3300048922 Bacteria 8952
148 Ga0496119_0068839 3300048922 Bacteria 2082
149 Ga0496119_0107041 3300048922 Bacteria 1559
150 Ga0496120_0000034 3300048923 Bacteria 215228
151 Ga0496120_0004196 3300048923 Bacteria 12311
152 Ga0496121_0000220 3300048924 Bacteria 123930
153 Ga0496121_0001476 3300048924 Bacteria 39569
154 Ga0496122_0000001 3300048925 Bacteria 1827766
155 Ga0496122_0004854 3300048925 Bacteria 16371
156 Ga0496122_0007025 3300048925 Bacteria 12656
157 Ga0496122_0019463 3300048925 Bacteria 6199
158 Ga0496122_0035793 3300048925 Bacteria 4030
159 Ga0496123_0000001 3300048926 Bacteria 1831497
160 Ga0496123_0009850 3300048926 Bacteria 8533
161 Ga0496123_0014463 3300048926 Bacteria 6539
162 Ga0496123_0034324 3300048926 Bacteria 3636
163 Ga0496124_0000083 3300048927 Bacteria 207798
164 Ga0496124_0013228 3300048927 Bacteria 8070
165 Ga0496124_0024308 3300048927 Bacteria 5513
166 Ga0496124_0076630 3300048927 Bacteria 2759
167 Ga0496125_0000001 3300048928 Bacteria 1766138
168 Ga0496125_0026465 3300048928 Bacteria 5285
169 Ga0496125_0041923 3300048928 Bacteria 3906
170 Ga0496125_0163397 3300048928 Bacteria 1509
171 Ga0496126_0173504 3300048929 Bacteria 1835
172 Ga0496126_0206724 3300048929 Bacteria 1654
173 Ga0496126_0290556 3300048929 Bacteria 1352
174 nmdc:mga03683_1917_c1 3300050489 Bacteria 6356
175 nmdc:mga0yw44_11106_c1 3300050492 Bacteria 4630
176 nmdc:mga0yw44_9056_c1 3300050492 Bacteria 5006
177 nmdc:mga0k408_11612_c1 3300050493 Bacteria 4800
178 nmdc:mga06z11_11940_c1 3300050494 Bacteria 3763
179 nmdc:mga06z11_20329_c1 3300050494 Bacteria 3067
180 nmdc:mga04h51_4064_c1 3300050495 Bacteria 3606
181 nmdc:mga07m45_2405_c1 3300050496 Bacteria 8777
182 nmdc:mga07m45_30403_c1 3300050496 Bacteria 2992
183 nmdc:mga0sz30_15207_c1 3300050516 Bacteria 3040
184 nmdc:mga0sz30_66376_c1 3300050516 Bacteria 1548
185 Ga0500556_0019611 3300053104 Bacteria 2152
186 Ga0500560_005788 3300053107 Bacteria 2767
187 Ga0500618_005079 3300053125 Bacteria 4057
188 Ga0500658_0008485 3300053134 Bacteria 3794
189 Ga0500561_0001080 3300053137 Bacteria 4387
190 Ga0500588_0037441 3300053146 Bacteria 1440
191 Ga0500604_0011726 3300053151 Bacteria 2360
192 Ga0500624_001406 3300053157 Bacteria 3975
193 Ga0500634_0004710 3300053161 Bacteria 6365
194 Ga0500636_0000036 3300053177 Bacteria 71714
195 Ga0500636_0000069 3300053177 Bacteria 50916
196 Ga0500636_0036218 3300053177 Bacteria 2920
197 Ga0500636_0089730 3300053177 Bacteria 1762

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300046558 Ga0495633_0022603 Ga0495633_0022603_988_2088 263
2 3300053157 Ga0500624_001406 Ga0500624_001406_1687_2781 264
3 3300053107 Ga0500560_005788 Ga0500560_005788_1019_2119 265
4 3300046558 Ga0495633_0096748 Ga0495633_0096748_183_1277 276
5 3300005548 Ga0070665_100012018 Ga0070665_1000120182 278
6 3300005578 Ga0068854_100078127 Ga0068854_1000781271 278
7 3300005616 Ga0068852_100073605 Ga0068852_1000736052 278
8 3300009093 Ga0105240_10000217 Ga0105240_1000021725 278
9 3300009177 Ga0105248_10113466 Ga0105248_101134661 278
10 3300009545 Ga0105237_10000978 Ga0105237_1000097813 278
11 3300010375 Ga0105239_10009668 Ga0105239_100096689 278
12 3300013104 Ga0157370_10005183 Ga0157370_1000518311 278
13 3300014497 Ga0182008_10048166 Ga0182008_100481662 278
14 3300015262 Ga0182007_10004991 Ga0182007_100049912 278
15 3300015265 Ga0182005_1004046 Ga0182005_10040462 278
16 3300025253 Ga0209677_101291 Ga0209677_1012915 278
17 3300025261 Ga0209233_1000330 Ga0209233_100033026 278
18 3300025913 Ga0207695_10001205 Ga0207695_1000120525 278
19 3300025914 Ga0207671_10000793 Ga0207671_1000079317 278
20 3300025941 Ga0207711_10053086 Ga0207711_100530864 278
21 3300028379 Ga0268266_10010370 Ga0268266_100103707 278
22 3300048903 Ga0496100_0013195 Ga0496100_0013195_2387_3406 278
23 3300048904 Ga0496101_0315908 Ga0496101_0315908_120_1139 278
24 3300048905 Ga0496102_0421605 Ga0496102_0421605_209_1228 278
25 3300048916 Ga0496113_0049164 Ga0496113_0049164_659_1678 278
26 3300048919 Ga0496116_0014657 Ga0496116_0014657_1215_2234 278
27 3300048920 Ga0496117_0002969 Ga0496117_0002969_6311_7330 278
28 3300048921 Ga0496118_0013244 Ga0496118_0013244_310_1329 278
29 3300048922 Ga0496119_0008586 Ga0496119_0008586_70_1089 278
30 3300048923 Ga0496120_0004196 Ga0496120_0004196_231_1250 278
31 3300048924 Ga0496121_0001476 Ga0496121_0001476_24063_25082 278
32 3300048925 Ga0496122_0007025 Ga0496122_0007025_5655_6674 278
33 3300048926 Ga0496123_0009850 Ga0496123_0009850_1790_2809 278
34 3300048927 Ga0496124_0076630 Ga0496124_0076630_231_1250 278
35 3300053161 Ga0500634_0004710 Ga0500634_0004710_2104_3204 279
36 3300050496 nmdc:mga07m45_30403_c1 nmdc:mga07m45_30403_c1_10_951 281
37 3300031995 Ga0307409_100079130 Ga0307409_1000791302 285
38 3300050516 nmdc:mga0sz30_66376_c1 nmdc:mga0sz30_66376_c1_75_1169 285
39 3300003354 JGI25160J50197_1000720 JGI25160J50197_100072014 291
40 3300004625 Ga0055543_1001296 Ga0055543_10012963 291
41 3300006178 Ga0075367_10059913 Ga0075367_100599132 291
42 3300025284 Ga0209130_1011536 Ga0209130_10115361 291
43 3300025302 Ga0207426_1000147 Ga0207426_1000147150 291
44 3300053177 Ga0500636_0000069 Ga0500636_0000069_47875_48942 291
45 3300046616 Ga0495668_0119119 Ga0495668_0119119_533_1429 292
46 3300002773 JGI25152J39213_1005879 JGI25152J39213_10058793 295
47 3300003187 JGI25151J46595_10000538 JGI25151J46595_1000053836 295
48 3300003187 JGI25151J46595_10001632 JGI25151J46595_100016324 295
49 3300003215 JGI25153J46596_10003684 JGI25153J46596_100036847 295
50 3300003771 Ga0055526_1000754 Ga0055526_100075425 295
51 3300003775 Ga0055524_1000796 Ga0055524_10007963 295
52 3300003790 Ga0055528_1000157 Ga0055528_10001573 295
53 3300003792 Ga0055540_1010290 Ga0055540_10102902 295
54 3300006038 Ga0075365_10009753 Ga0075365_100097534 295
55 3300006042 Ga0075368_10025013 Ga0075368_100250132 295
56 3300006177 Ga0075362_10002443 Ga0075362_100024432 295
57 3300006186 Ga0075369_10013220 Ga0075369_100132203 295
58 3300006195 Ga0075366_10004708 Ga0075366_100047084 295
59 3300006353 Ga0075370_10001154 Ga0075370_100011547 295
60 3300025258 Ga0209129_1000231 Ga0209129_100023144 295
61 3300025273 Ga0209673_1000385 Ga0209673_100038568 295
62 3300025292 Ga0209676_1017603 Ga0209676_10176032 295
63 3300025294 Ga0209025_1000058 Ga0209025_100005849 295
64 3300025295 Ga0209564_1000118 Ga0209564_1000118163 295
65 3300025297 Ga0209758_1000366 Ga0209758_100036657 295
66 3300025299 Ga0209256_1000160 Ga0209256_100016081 295
67 3300025303 Ga0209051_1003829 Ga0209051_10038297 295
68 3300050489 nmdc:mga03683_1917_c1 nmdc:mga03683_1917_c1_2458_3564 295
69 3300050492 nmdc:mga0yw44_9056_c1 nmdc:mga0yw44_9056_c1_2238_3344 295
70 3300050493 nmdc:mga0k408_11612_c1 nmdc:mga0k408_11612_c1_3241_4347 295
71 3300050494 nmdc:mga06z11_20329_c1 nmdc:mga06z11_20329_c1_1446_2552 295
72 3300050496 nmdc:mga07m45_2405_c1 nmdc:mga07m45_2405_c1_2465_3571 295
73 3300050516 nmdc:mga0sz30_15207_c1 nmdc:mga0sz30_15207_c1_563_1669 295
74 3300048925 Ga0496122_0035793 Ga0496122_0035793_1302_2369 297
75 3300053177 Ga0500636_0000036 Ga0500636_0000036_64540_65598 301
76 3300005353 Ga0070669_100062083 Ga0070669_1000620831 303
77 3300046501 Ga0495607_0044584 Ga0495607_0044584_442_1464 306
78 3300046538 Ga0495609_0040035 Ga0495609_0040035_341_1363 306
79 3300046660 Ga0495625_0094596 Ga0495625_0094596_689_1711 306
80 3300047443 Ga0495687_021678 Ga0495687_021678_685_1707 306
81 3300047443 Ga0495687_070788 Ga0495687_070788_355_1377 306
82 3300053125 Ga0500618_005079 Ga0500618_005079_819_1889 306
83 3300003320 rootH2_10057199 rootH2_100571996 307
84 3300003322 rootL2_10027389 rootL2_100273897 307
85 3300003323 rootH1_10261931 rootH1_102619312 307
86 3300053177 Ga0500636_0036218 Ga0500636_0036218_1199_2224 307
87 3300046522 Ga0495643_0154842 Ga0495643_0154842_53_1078 309
88 3300053104 Ga0500556_0019611 Ga0500556_0019611_763_1785 311
89 3300003792 Ga0055540_1000169 Ga0055540_100016915 315
90 3300025273 Ga0209673_1000522 Ga0209673_100052262 315
91 3300025292 Ga0209676_1021377 Ga0209676_10213772 315
92 3300025298 Ga0209050_1003720 Ga0209050_10037206 315
93 3300025303 Ga0209051_1000418 Ga0209051_100041862 315
94 3300025304 Ga0209257_1006051 Ga0209257_10060514 315
95 3300048925 Ga0496122_0019463 Ga0496122_0019463_4077_5063 317
96 3300048928 Ga0496125_0026465 Ga0496125_0026465_2324_3310 317
97 3300046674 Ga0495588_0100400 Ga0495588_0100400_91_1113 318
98 3300037312 Ga0395899_0000217 Ga0395899_0000217_61169_62200 319
99 3300037418 Ga0395900_0000270 Ga0395900_0000270_61169_62200 319
100 3300037466 Ga0395898_0000470 Ga0395898_0000470_61906_62937 319
101 3300037471 Ga0395905_0000253 Ga0395905_0000253_17847_18878 319
102 3300038443 Ga0395901_0000285 Ga0395901_0000285_645_1676 319
103 iso_pu_bacteria 2989349275 2989353179 319
104 3300053134 Ga0500658_0008485 Ga0500658_0008485_2412_3464 320
105 3300005937 Ga0081455_10172761 Ga0081455_101727612 322
106 3300044842 Ga0466957_0018792 Ga0466957_0018792_1563_2576 323
107 3300003771 Ga0055526_1000859 Ga0055526_100085920 324
108 3300003775 Ga0055524_1027922 Ga0055524_10279222 324
109 3300025295 Ga0209564_1000025 Ga0209564_1000025358 324
110 3300025299 Ga0209256_1001260 Ga0209256_100126015 324
111 3300002739 JGI25158J39367_1006284 JGI25158J39367_10062841 325
112 3300002987 JGI25159J45721_1000005 JGI25159J45721_100000541 325
113 3300003187 JGI25151J46595_10021453 JGI25151J46595_100214532 325
114 3300003354 JGI25160J50197_1000005 JGI25160J50197_1000005349 325
115 3300003374 JGI25161J50226_1000392 JGI25161J50226_100039215 325
116 3300004625 Ga0055543_1000175 Ga0055543_100017541 325
117 3300005262 Ga0065165_1000002 Ga0065165_100000241 325
118 3300013249 Ga0171463_1002 Ga0171463_1002927 325
119 3300015690 Ga0183363_1359 Ga0183363_13591 325
120 3300025208 Ga0209436_100152 Ga0209436_10015215 325
121 3300025284 Ga0209130_1000010 Ga0209130_100001040 325
122 3300025292 Ga0209676_1010842 Ga0209676_10108422 325
123 3300025294 Ga0209025_1000459 Ga0209025_100045948 325
124 3300025298 Ga0209050_1022689 Ga0209050_10226892 325
125 3300025302 Ga0207426_1000036 Ga0207426_100003640 325
126 3300053146 Ga0500588_0037441 Ga0500588_0037441_101_1240 326
127 iso_pu_bacteria 2554235003 2554246280 326
128 iso_pu_bacteria 2558860242 2559293502 326
129 iso_pu_bacteria 2643221693 2644519531 326
130 iso_pu_bacteria 2808606387 2808986727 326
131 iso_pu_bacteria 2899845264 2899845791 326
132 iso_pu_bacteria 2926760298 2926761819 326
133 iso_pu_bacteria 2979095461 2979099696 326
134 iso_pu_bacteria 650716007 650738740 326
135 3300010375 Ga0105239_10010679 Ga0105239_100106798 327
136 3300037471 Ga0395905_0006987 Ga0395905_0006987_7504_8520 327
137 iso_pu_bacteria 2600255308 2601746254 327
138 iso_pu_bacteria 2758568016 2758638852 327
139 iso_pu_bacteria 2838675328 2838677536 327
140 iso_pu_bacteria 2838714209 2838716425 327
141 iso_pu_bacteria 2838719591 2838719775 327
142 iso_pu_bacteria 2838724970 2838727176 327
143 iso_pu_bacteria 2841846520 2841846706 327
144 iso_pu_bacteria 2842124991 2842127265 327
145 iso_pu_bacteria 2842130223 2842132429 327
146 iso_pu_bacteria 2842152218 2842152402 327
147 iso_pu_bacteria 2842170452 2842172670 327
148 iso_pu_bacteria 2842175837 2842176021 327
149 iso_pu_bacteria 2842187318 2842189532 327
150 iso_pu_bacteria 2842211629 2842213846 327
151 iso_pu_bacteria 2842224351 2842224536 327
152 iso_pu_bacteria 2842515876 2842517550 327
153 iso_pu_bacteria 2899792073 2899794408 327
154 iso_pu_bacteria 2919114240 2919116642 327
155 iso_pu_bacteria 2926754445 2926754651 327
156 iso_pu_bacteria 2929138655 2929142118 327
157 iso_pu_bacteria 2933006813 2933007049 327
158 iso_pu_bacteria 2933594066 2933594251 327
159 iso_pu_bacteria 2989349275 2989354910 327
160 iso_pu_bacteria 2979089926 2979092915 328
161 iso_pu_bacteria 8054460903 8054461049 328
162 3300003214 JGI25165J46597_1000068 JGI25165J46597_100006876 330
163 3300005548 Ga0070665_100003012 Ga0070665_10000301215 330
164 3300006042 Ga0075368_10000391 Ga0075368_100003918 330
165 3300011119 Ga0105246_10058075 Ga0105246_100580752 330
166 3300013100 Ga0157373_10042861 Ga0157373_100428613 330
167 3300013102 Ga0157371_10000004 Ga0157371_10000004182 330
168 3300013104 Ga0157370_10132803 Ga0157370_101328032 330
169 3300025233 Ga0209437_100067 Ga0209437_100067151 330
170 3300025261 Ga0209233_1000088 Ga0209233_1000088151 330
171 3300027866 Ga0209813_10001432 Ga0209813_100014326 330
172 3300028379 Ga0268266_10005424 Ga0268266_100054245 330
173 3300048920 Ga0496117_0000002 Ga0496117_0000002_2302278_2303366 330
174 3300048921 Ga0496118_0002844 Ga0496118_0002844_5316_6404 330
175 3300048922 Ga0496119_0005479 Ga0496119_0005479_7680_8699 330
176 3300048922 Ga0496119_0107041 Ga0496119_0107041_104_1192 330
177 3300048923 Ga0496120_0000034 Ga0496120_0000034_208796_209884 330
178 3300048925 Ga0496122_0000001 Ga0496122_0000001_1646285_1647373 330
179 3300048925 Ga0496122_0004854 Ga0496122_0004854_6842_7861 330
180 3300048926 Ga0496123_0000001 Ga0496123_0000001_1650016_1651104 330
181 3300048926 Ga0496123_0034324 Ga0496123_0034324_2324_3343 330
182 3300048927 Ga0496124_0013228 Ga0496124_0013228_1408_2496 330
183 3300048927 Ga0496124_0024308 Ga0496124_0024308_3281_4300 330
184 3300048929 Ga0496126_0206724 Ga0496126_0206724_467_1555 330
185 3300050492 nmdc:mga0yw44_11106_c1 nmdc:mga0yw44_11106_c1_1986_3074 330
186 3300050494 nmdc:mga06z11_11940_c1 nmdc:mga06z11_11940_c1_457_1545 330
187 3300050495 nmdc:mga04h51_4064_c1 nmdc:mga04h51_4064_c1_477_1565 330
188 3300053137 Ga0500561_0001080 Ga0500561_0001080_706_1794 330
189 iso_pu_bacteria 2818991439 2819556801 330
190 iso_pu_bacteria 2889016732 2889020499 330
191 iso_pu_bacteria 2906354277 2906357490 330
192 iso_pu_bacteria 2958172287 2958175820 330
193 iso_pu_bacteria 2965119406 2965121406 330
194 iso_pu_bacteria 2977971508 2977974670 330
195 iso_pu_bacteria 2979100975 2979104884 330
196 iso_pu_bacteria 2979710463 2979717188 330
197 iso_pu_bacteria 2984509177 2984513315 330
198 iso_pu_bacteria 2984518228 2984520316 330
199 iso_pu_bacteria 2984537506 2984539614 330
200 iso_pu_bacteria 2984601300 2984601840 330
201 iso_pu_bacteria 8004640170 8004644313 330
202 3300025294 Ga0209025_1000060 Ga0209025_100006069 331
203 3300025303 Ga0209051_1052803 Ga0209051_10528032 331
204 3300048919 Ga0496116_0077446 Ga0496116_0077446_259_1323 331
205 3300048921 Ga0496118_0016840 Ga0496118_0016840_1656_2720 331
206 3300048922 Ga0496119_0068839 Ga0496119_0068839_259_1323 331
207 3300048924 Ga0496121_0000220 Ga0496121_0000220_38932_39996 331
208 3300048926 Ga0496123_0014463 Ga0496123_0014463_2237_3301 331
209 3300048928 Ga0496125_0000001 Ga0496125_0000001_39083_40147 331
210 iso_pu_bacteria 2537561587 2537877384 331
211 iso_pu_bacteria 2643221582 2643920661 331
212 iso_pu_bacteria 2757320392 2757570017 331
213 iso_pu_bacteria 2791355091 2792624100 331
214 iso_pu_bacteria 2791355092 2792629476 331
215 iso_pu_bacteria 2847670302 2847673135 331
216 iso_pu_bacteria 2856314179 2856319832 331
217 iso_pu_bacteria 2878035449 2878035739 331
218 iso_pu_bacteria 2906414383 2906420608 331
219 iso_pu_bacteria 2933011516 2933015361 331
220 iso_pu_bacteria 643692032 643824064 331
221 iso_pu_bacteria 8003570095 8003572286 331
222 3300048927 Ga0496124_0000083 Ga0496124_0000083_12017_13081 332
223 3300048928 Ga0496125_0163397 Ga0496125_0163397_310_1329 332
224 3300048929 Ga0496126_0173504 Ga0496126_0173504_426_1484 332
225 iso_pu_bacteria 2516143018 2516208024 332
226 iso_pu_bacteria 2643221607 2644047118 332
227 iso_pu_bacteria 2643221623 2644130462 332
228 iso_pu_bacteria 2643221636 2644203443 332
229 iso_pu_bacteria 2643221686 2644479907 332
230 iso_pu_bacteria 2643221689 2644496745 332
231 iso_pu_bacteria 2854911287 2854912205 332
232 iso_pu_bacteria 2882632389 2882634833 332
233 iso_pu_bacteria 8002285264 8002287346 332
234 iso_pu_bacteria 2513237140 2513884836 333
235 iso_pu_bacteria 2582581316 2585334860 333
236 iso_pu_bacteria 2643221557 2643805373 333
237 iso_pu_bacteria 2643221610 2644066953 333
238 iso_pu_bacteria 2643221668 2644379109 333
239 iso_pu_bacteria 2643221675 2644420315 333
240 iso_pu_bacteria 2643221680 2644453841 333
241 iso_pu_bacteria 2643221726 2644686385 333
242 iso_pu_bacteria 2751185800 2753356830 333
243 iso_pu_bacteria 2775507266 2778174205 333
244 iso_pu_bacteria 2818991448 2819610857 333
245 iso_pu_bacteria 2842482326 2842485360 333
246 iso_pu_bacteria 2842509118 2842509242 333
247 iso_pu_bacteria 3005416602 3005422489 333
248 iso_pu_bacteria 8005314921 8005320170 333
249 iso_pu_bacteria 8005645114 8005651504 333
250 3300005347 Ga0070668_100022426 Ga0070668_1000224265 334
251 3300005548 Ga0070665_100188295 Ga0070665_1001882952 334
252 3300005719 Ga0068861_100392213 Ga0068861_1003922132 334
253 3300009148 Ga0105243_10126904 Ga0105243_101269042 334
254 3300025972 Ga0207668_10040972 Ga0207668_100409722 334
255 3300026118 Ga0207675_100471162 Ga0207675_1004711622 334
256 iso_pu_bacteria 2509276022 2509395895 334
257 iso_pu_bacteria 2512875024 2512959936 334
258 iso_pu_bacteria 2582581308 2585281201 334
259 iso_pu_bacteria 2585427527 2585536139 334
260 iso_pu_bacteria 2585427530 2585557624 334
261 iso_pu_bacteria 2615840626 2616310997 334
262 iso_pu_bacteria 2818991453 2819641737 334
263 iso_pu_bacteria 2989771324 2989776418 334
264 iso_pu_bacteria 8054558443 8054561431 334
265 3300005548 Ga0070665_100096423 Ga0070665_1000964232 335
266 iso_pu_bacteria 2510917022 2511135565 335
267 iso_pu_bacteria 2524023209 2524457026 335
268 iso_pu_bacteria 2582581307 2585272640 335
269 iso_pu_bacteria 2582581315 2585327287 335
270 iso_pu_bacteria 2585427531 2585562308 335
271 iso_pu_bacteria 2585427608 2585896746 335
272 iso_pu_bacteria 2585427609 2585906525 335
273 iso_pu_bacteria 2585428125 2587981947 335
274 iso_pu_bacteria 2615840698 2616552796 335
275 iso_pu_bacteria 2667528174 2671114258 335
276 iso_pu_bacteria 2838029111 2838030636 335
277 iso_pu_bacteria 2842298080 2842299421 335
278 iso_pu_bacteria 2842357229 2842362169 335
279 iso_pu_bacteria 2842475841 2842477083 335
280 iso_pu_bacteria 2842502639 2842503880 335
281 iso_pu_bacteria 2919408235 2919412415 335
282 iso_pu_bacteria 2970489779 2970493274 335
283 iso_pu_bacteria 8005682033 8005683766 335
284 iso_pu_bacteria 8005484373 8005487936 336
285 3300002737 JGI25162J39368_1000617 JGI25162J39368_10006177 337
286 3300003214 JGI25165J46597_1000416 JGI25165J46597_100041612 337
287 3300003775 Ga0055524_1000839 Ga0055524_100083923 337
288 3300025233 Ga0209437_100104 Ga0209437_100104124 337
289 3300025261 Ga0209233_1000054 Ga0209233_100005411 337
290 3300025299 Ga0209256_1000342 Ga0209256_100034238 337
291 3300048922 Ga0496119_0003270 Ga0496119_0003270_13382_14428 337
292 3300048928 Ga0496125_0041923 Ga0496125_0041923_378_1442 337
293 3300048929 Ga0496126_0290556 Ga0496126_0290556_41_1105 337
294 3300053177 Ga0500636_0089730 Ga0500636_0089730_186_1217 337
295 iso_pu_bacteria 2599185352 2600193771 337
296 3300053151 Ga0500604_0011726 Ga0500604_0011726_609_1640 338
297 iso_pu_bacteria 2582581283 2585168594 338
298 iso_pu_bacteria 2643221723 2644675033 338
299 3300002704 JGI25155J39150_1000016 JGI25155J39150_1000016150 339
300 3300002705 JGI25156J39149_1000018 JGI25156J39149_1000018150 339
301 3300002705 JGI25156J39149_1000046 JGI25156J39149_100004636 339
302 3300002738 JGI25154J39366_1000018 JGI25154J39366_100001820 339
303 3300002741 JGI25157J39369_1000022 JGI25157J39369_100002220 339
304 3300002741 JGI25157J39369_1000215 JGI25157J39369_100021525 339
305 3300003323 rootH1_10061136 rootH1_100611368 339
306 3300025206 Ga0209435_100017 Ga0209435_10001738 339
307 3300025246 Ga0209646_1000048 Ga0209646_1000048283 339
308 3300025250 Ga0209026_1000035 Ga0209026_1000035283 339
309 3300025256 Ga0209759_1000027 Ga0209759_100002738 339
310 3300027312 Ga0209371_1003557 Ga0209371_10035572 339
311 3300030500 Ga0268256_1003197 Ga0268256_10031978 339
312 3300045976 Ga0466967_0234903 Ga0466967_0234903_141_1274 339

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12833

HTH_18

Helix-turn-helix domain

254

333

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
3oio-assembly1.cif.gz_A crystal structure of transcriptional regulator (arac-type dna-binding domain-containing proteins) from chromobacterium violaceum 0.8712 225 338
3mkl-assembly1.cif.gz_A crystal structure of dna-binding transcriptional dual regulator from escherichia coli k-12 0.8689 230 333
3lsg-assembly1.cif.gz_A the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.8608 229 331
3oio-assembly1.cif.gz_A crystal structure of transcriptional regulator (arac-type dna-binding domain-containing proteins) from chromobacterium violaceum 0.8569 225 338
6swi-assembly1.cif.gz_A the c-terminal domain of arat, a response regulator from geobacillus stearothermophilus 0.8516 230 338
ID Description Score Start End Superfamily
af_P32677_219_275_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9647 282 333 1.10.10.60
1d5yD02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9644 285 332 1.10.10.60
af_P09377_170_274_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9044 229 334 1.10.10.60
af_P09377_170_274_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8807 229 334 1.10.10.60
af_P76135_133_241_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8768 230 335 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A0E2N8D4-F1-model_v4 AraC family transcriptional regulator 0.9801 226 335 GO:0003700
GO:0043565
AF-A0A2E3UBA2-F1-model_v4 HTH araC/xylS-type domain-containing protein 0.9773 232 332 GO:0003700
GO:0043565
AF-A0A1H4K0N1-F1-model_v4 AraC-type DNA-binding protein 0.9757 226 339 GO:0003700
GO:0043565
AF-A0A3S1WWN3-F1-model_v4 deleted 0.9706 234 339
AF-K0VBP7-F1-model_v4 AraC family transcriptional regulator 0.9656 1 172 GO:0016020

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pLDDT pTM Quality
84.44 0.6 Medium
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Predicted Structure (AlphaFold2)

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