F399454

General Info

Members Datasets Scaffolds Average Seq Length
307 242 614 451

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2912757875|2912762470
Length 500
Sequence GAGDADGTGGAGSTGGTGKTGGTNPRTGGGDGFGRGSEPDLGPDGPSDTGGGGGADAVGGLRRTLGFRDLVVYGLLFIAPMAPVGVYGTLDAKSHGAVALVYVFATVAMAFTAFSYAQMIRVAPQAGSVFAYARKGLGEGPGFIAGWMAMLDYLLIPAVAYLFAGIAMEALVPSVDRWIWTGLAVVITTLLNLWGVRAAARVGFFVLAMEIVVLVVFLVSAIVVLTQDGATRGWLSPLTGDLTFSLTAVLSGVSVAVLSYLGFDAIASFAEEVTGGSRKVARAVLFCLALAGVLFVAQTYLVALLEPLSSAELAADPTKQGSAFYDAVDASVGTWLHDLVAVSKAIGAAFAALAGQAAAARLLFAMGRERRLPRLLSRTDAGTPRVALLLAAVVTLIAAVWAARNDNGLDHLVSVVDIGALTAFILLHASVVGWYAVRRMEGPPRILAHVVAPVVGAGVLVAVIVEAAESAQVVGAIWLAVGLVVLAIQWRRRTLTRKAP

Samples

Sample ID Description Type Environment
1 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
6 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
7 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
8 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
9 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
12 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
13 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
14 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
15 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
16 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
17 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
18 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
21 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
22 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
23 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
24 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
25 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
26 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
27 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
28 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
30 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
31 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
32 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
33 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
34 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
35 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
36 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
37 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
38 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
39 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
40 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
41 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
42 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
43 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
44 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
63 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
64 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
65 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
66 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
67 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
68 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
69 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
70 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
71 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
72 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
73 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
74 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
75 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
76 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
77 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
78 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
79 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
80 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
81 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
82 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
83 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
84 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
85 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
86 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
87 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
88 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
89 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
90 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
91 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
92 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
93 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
94 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
95 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
96 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
97 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
98 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
99 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
100 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
101 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
102 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
103 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
104 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
105 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
106 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
107 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
108 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
109 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
110 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
111 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
112 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
113 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
114 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
115 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
116 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
117 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
118 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
119 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
120 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
121 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
122 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
123 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
124 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
125 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
126 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
127 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
128 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
129 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
130 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
131 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
132 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
133 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
134 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
135 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
136 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
137 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
138 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
139 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
140 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
141 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
142 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
143 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
144 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
145 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
146 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
147 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
148 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
149 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
150 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
151 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
152 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
153 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
154 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
155 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
156 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
157 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
158 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
159 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
160 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
161 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
162 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
163 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
164 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
165 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
166 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
167 2510065053 Pseudomonas sp. MOIL14HWK12:I1 Isolate Rhizosphere
168 2510065055 Pseudomonas sp. MOIL14HWK12:I2 Isolate Rhizosphere
169 2510065058 Pseudomonas oleovorans MOIL14HWK12 Isolate Rhizosphere
170 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
171 2582581312 Streptomyces atratus OK008 Isolate Rhizosphere
172 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
173 2599185167 Pseudomonas sp. NFPP28 Isolate Rhizoplane
174 2599185179 Pseudomonas sp. NFR09 Isolate Rhizoplane
175 2599185190 Pseudomonas sp. NFPP04 Isolate Rhizoplane
176 2599185191 Pseudomonas sp. NFPP24 Isolate Rhizoplane
177 2599185290 Pseudomonas sp. NFPP11 Isolate Rhizoplane
178 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
179 2643221548 Streptomyces sp. Root55 Isolate Unclassified
180 2643221578 Streptomyces sp. Root63 Isolate Unclassified
181 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
182 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
183 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
184 2643221670 Streptomyces sp. Root431 Isolate Unclassified
185 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
186 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
187 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
188 2747842501 Xanthomonas sp. WCS2014-23 Isolate Unclassified
189 2773857672 Pseudomonas sp. 1766 Isolate Unclassified
190 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
191 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
192 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
193 2802429296 Streptomyces sampsonii KJ40 Isolate Rhizosphere
194 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
195 2808606448 Streptomyces sp. 193411 Isolate Unclassified
196 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
197 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
198 2862178590 Streptomyces sp. SDr-06 Isolate Rhizosphere
199 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
200 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
201 2862574272 Streptomyces sp. AcE210 Isolate Nodule
202 2867428634 Streptomyces sp. RP5T Isolate Unclassified
203 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
204 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
205 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
206 2883821847 Microlunatus elymi KUDC0627 Isolate Rhizosphere
207 2888373701 Serratia rhizosphaerae KUDC3025 Isolate Rhizosphere
208 2917832318 Pseudomonas rhizoryzae RY24 Isolate Unclassified
209 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
210 2919051321 Sinomonas atrocyanea 1003 Isolate Rhizosphere
211 2919125081 Pseudomonas psychrotolerans 1545 Isolate Rhizosphere
212 2919414237 Neobacillus niacini 3240 Isolate Rhizosphere
213 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
214 2919704043 Hydrogenophaga palleronii 4249 Isolate Unclassified
215 2931390751 Pseudomonas sp. DR208 Isolate Rhizosphere
216 2935390628 Streptomyces sp. PvR034 Isolate Rhizosphere
217 2946024296 Arthrobacter woluwensis W4I2 Isolate Rhizosphere
218 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
219 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
220 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
221 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
222 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
223 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
224 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
225 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
226 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
227 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
228 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
229 2974298342 Pseudomonas sp. SORGH_AS 211 Isolate Unclassified
230 2984499530 Pseudomonas sp. SORGH_AS199 Isolate Aerial Root
231 2984504281 Pseudomonas psychrotolerans SORGH_AS201 Isolate Aerial Root
232 2995463766 Streptacidiphilus fuscans NEAU-YB345 Isolate Unclassified
233 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
234 8004021418 Arthrobacter sp. SDTb3-6 Isolate Rhizosphere
235 8008574985 Streptomyces sp. Jing01 Isolate Rhizosphere
236 8016728285 Pseudomonas psychrotolerans SORGH_AS 227 Isolate Unclassified
237 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
238 8025478263 Streptomyces telluris AA8 Isolate Rhizosphere
239 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
240 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere
241 8056447290 Streptomyces huiliensis SCA2-4 Isolate Rhizosphere
242 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 74.27
Metatranscriptomes 0.65
Isolates 25.08

Biome Distribution

Category Percentage (%)
Aerial Root 0.65
Bulb 0
Endosphere 1.3
Nodule 0.33
Rhizoplane 1.63
Rhizosphere 76.87
Stem 0
Stem Tuber 0
Unclassified 0.98

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10012590 3300003316 Bacteria 5393
2 rootH2_10025881 3300003320 Bacteria 5897
3 rootL2_10055804 3300003322 Bacteria 5009
4 rootH1_10188674 3300003323 Bacteria 1788
5 Ga0006562J51391_1126477 3300003578 Bacteria 7925
6 Ga0006562J51391_1126478 3300003578 Bacteria 7970
7 Ga0058692_1000015 3300003856 Bacteria 295729
8 Ga0070666_10026408 3300005335 Bacteria 3794
9 Ga0070689_100186431 3300005340 Bacteria 1687
10 Ga0070668_100012801 3300005347 Bacteria 6245
11 Ga0070669_100044451 3300005353 Bacteria 3237
12 Ga0070669_100118464 3300005353 Bacteria 2017
13 Ga0070674_100042210 3300005356 Bacteria 3097
14 Ga0070674_100098844 3300005356 Bacteria 2122
15 Ga0070674_100140166 3300005356 Bacteria 1814
16 Ga0070709_10003415 3300005434 Bacteria 8527
17 Ga0070713_100000098 3300005436 Bacteria 55237
18 Ga0070662_100006595 3300005457 Bacteria 7492
19 Ga0068853_100001124 3300005539 Bacteria 18945
20 Ga0068853_100007623 3300005539 Bacteria 8671
21 Ga0068853_100010213 3300005539 Bacteria 7590
22 Ga0070695_100093570 3300005545 Bacteria 2011
23 Ga0070664_100056951 3300005564 Bacteria 3322
24 Ga0068857_100005681 3300005577 Bacteria 10664
25 Ga0068856_100000185 3300005614 Bacteria 64973
26 Ga0068852_100030988 3300005616 Bacteria 4407
27 Ga0068859_100065291 3300005617 Bacteria 3674
28 Ga0068864_100114296 3300005618 Unclassified 2407
29 Ga0068851_10000101 3300005834 Bacteria 46245
30 Ga0068851_10011814 3300005834 Bacteria 4103
31 Ga0068862_100020954 3300005844 Bacteria 5462
32 Ga0068862_100088276 3300005844 Bacteria 2698
33 Ga0070712_100000408 3300006175 Bacteria 24528
34 Ga0070712_100001103 3300006175 Bacteria 16258
35 Ga0075434_100037417 3300006871 Bacteria 4804
36 Ga0075436_100000092 3300006914 Bacteria 52229
37 Ga0097620_100065292 3300006931 Bacteria 3674
38 Ga0075435_100196553 3300007076 Unclassified 1708
39 Ga0105251_10003281 3300009011 Bacteria 11860
40 Ga0105244_10005394 3300009036 Bacteria 8508
41 Ga0105240_10004424 3300009093 Bacteria 21427
42 Ga0105245_10187263 3300009098 Bacteria 1980
43 Ga0105241_10036964 3300009174 Bacteria 3676
44 Ga0105241_10065659 3300009174 Bacteria 2804
45 Ga0105237_10006823 3300009545 Bacteria 12586
46 Ga0105238_10000922 3300009551 Bacteria 30088
47 Ga0157373_10006776 3300013100 Bacteria 8530
48 Ga0157369_10003858 3300013105 Bacteria 17819
49 Ga0157369_10027210 3300013105 Bacteria 6341
50 Ga0157375_10024504 3300013308 Bacteria 5586
51 Ga0182008_10000784 3300014497 Bacteria 22244
52 Ga0157379_10033675 3300014968 Bacteria 4569
53 Ga0182005_1004127 3300015265 Bacteria 4750
54 Ga0183367_1002 3300015688 Bacteria 1101531
55 Ga0209257_1000270 3300025304 Bacteria 119394
56 Ga0207655_1036204 3300025728 Bacteria 2191
57 Ga0207713_1000996 3300025735 Bacteria 24840
58 Ga0207680_10019426 3300025903 Bacteria 3634
59 Ga0207699_10000212 3300025906 Bacteria 34595
60 Ga0207695_10016347 3300025913 Bacteria 8684
61 Ga0207693_10000357 3300025915 Bacteria 41920
62 Ga0207693_10001052 3300025915 Bacteria 24678
63 Ga0207681_10006960 3300025923 Bacteria 6938
64 Ga0207681_10077644 3300025923 Bacteria 2335
65 Ga0207681_10086169 3300025923 Bacteria 2231
66 Ga0207659_10086951 3300025926 Bacteria 2326
67 Ga0207700_10000010 3300025928 Bacteria 298473
68 Ga0207706_10000462 3300025933 Bacteria 43387
69 Ga0207706_10056418 3300025933 Bacteria 3463
70 Ga0207669_10026004 3300025937 Bacteria 3175
71 Ga0207669_10110172 3300025937 Bacteria 1843
72 Ga0207669_10127300 3300025937 Bacteria 1743
73 Ga0207639_10007275 3300026041 Bacteria 7541
74 Ga0207639_10014205 3300026041 Bacteria 5592
75 Ga0207702_10000174 3300026078 Bacteria 77455
76 Ga0207702_10001287 3300026078 Bacteria 25151
77 Ga0207675_100064234 3300026118 Bacteria 3431
78 Ga0207675_100085577 3300026118 Bacteria 2959
79 Ga0207675_100389717 3300026118 Bacteria 1371
80 Ga0207683_10008387 3300026121 Bacteria 8839
81 Ga0209371_1000011 3300027312 Bacteria 848456
82 Ga0209371_1009032 3300027312 Bacteria 3218
83 Ga0268265_10148556 3300028380 Bacteria 1973
84 Ga0265318_10000474 3300028577 Bacteria 29639
85 Ga0307517_10001976 3300028786 Bacteria 33403
86 Ga0307517_10150849 3300028786 Bacteria 1594
87 Ga0307515_10000573 3300028794 Bacteria 86907
88 Ga0268256_1000011 3300030500 Bacteria 848625
89 Ga0268256_1015645 3300030500 Bacteria 2206
90 Ga0307511_10002022 3300030521 Bacteria 21275
91 Ga0307512_10024486 3300030522 Bacteria 5369
92 Ga0265320_10000214 3300031240 Bacteria 46846
93 Ga0265325_10002698 3300031241 Bacteria 11863
94 Ga0265339_10028793 3300031249 Bacteria 3156
95 Ga0265327_10000280 3300031251 Bacteria 100757
96 Ga0307513_10028424 3300031456 Bacteria 6394
97 Ga0307509_10041350 3300031507 Bacteria 5002
98 Ga0307509_10203807 3300031507 Bacteria 1811
99 Ga0307509_10207528 3300031507 Bacteria 1788
100 Ga0307508_10025810 3300031616 Bacteria 5327
101 Ga0307508_10039603 3300031616 Bacteria 4232
102 Ga0307514_10037781 3300031649 Bacteria 3825
103 Ga0307514_10065232 3300031649 Bacteria 2759
104 Ga0265314_10008043 3300031711 Bacteria 9090
105 Ga0307516_10022807 3300031730 Bacteria 6426
106 Ga0307516_10023805 3300031730 Bacteria 6266
107 Ga0307507_10049651 3300033179 Bacteria 4062
108 Ga0307510_10110325 3300033180 Bacteria 2496
109 Ga0395900_0012620 3300037418 Bacteria 8642
110 Ga0395900_0058291 3300037418 Bacteria 3975
111 Ga0395900_0252508 3300037418 Bacteria 1764
112 Ga0395898_0053737 3300037466 Bacteria 3933
113 Ga0395905_0332350 3300037471 Bacteria 1410
114 Ga0436365_1926998 3300039437 Bacteria 2455
115 Ga0439448_0008577 3300042005 Bacteria 2995
116 Ga0439455_0004331 3300042012 Bacteria 2807
117 Ga0439463_003082 3300042016 Bacteria 4231
118 Ga0450903_003283 3300042138 Bacteria 2809
119 Ga0439458_0002589 3300042157 Bacteria 4376
120 Ga0466960_0014746 3300044901 Bacteria 3355
121 Ga0466960_0100826 3300044901 Bacteria 1486
122 Ga0495603_0003723 3300046455 Bacteria 9072
123 Ga0495603_0003955 3300046455 Bacteria 8827
124 Ga0495603_0019500 3300046455 Bacteria 4104
125 Ga0495603_0043382 3300046455 Bacteria 2685
126 Ga0495629_0017057 3300046459 Bacteria 5209
127 Ga0495629_0111504 3300046459 Bacteria 1907
128 Ga0495638_0074707 3300046460 Bacteria 2067
129 Ga0495651_0019455 3300046462 Bacteria 5263
130 Ga0495580_0094520 3300046472 Bacteria 2080
131 Ga0495582_0059413 3300046473 Bacteria 2109
132 Ga0495662_0014678 3300046476 Bacteria 3807
133 Ga0495662_0019302 3300046476 Bacteria 3297
134 Ga0495664_0005459 3300046477 Bacteria 6982
135 Ga0495585_0059594 3300046492 Bacteria 2103
136 Ga0495594_0003669 3300046499 Bacteria 7886
137 Ga0495594_0026186 3300046499 Bacteria 3136
138 Ga0495618_0035229 3300046514 Bacteria 3141
139 Ga0495630_0036066 3300046517 Bacteria 3697
140 Ga0495643_0006810 3300046522 Bacteria 7469
141 Ga0495654_0013813 3300046530 Bacteria 4310
142 Ga0495640_0127640 3300046533 Bacteria 1648
143 Ga0495587_0007921 3300046536 Bacteria 6862
144 Ga0495622_0006450 3300046557 Bacteria 5440
145 Ga0495622_0011883 3300046557 Bacteria 4026
146 Ga0495622_0042465 3300046557 Bacteria 2114
147 Ga0495633_0037610 3300046558 Bacteria 2315
148 Ga0495634_0020871 3300046642 Bacteria 4640
149 Ga0495611_0017584 3300046648 Bacteria 3060
150 Ga0495625_0004099 3300046660 Bacteria 13904
151 Ga0495635_0014376 3300046663 Bacteria 5536
152 Ga0495588_0005539 3300046674 Bacteria 5624
153 Ga0495623_0002496 3300046679 Bacteria 12202
154 Ga0495646_0001763 3300046680 Bacteria 12995
155 Ga0495613_0004855 3300046689 Bacteria 10092
156 Ga0495613_0109024 3300046689 Bacteria 1996
157 Ga0495670_0001259 3300046691 Bacteria 12383
158 Ga0495671_0043472 3300046692 Bacteria 2255
159 Ga0495671_0072063 3300046692 Bacteria 1696
160 Ga0495589_0040611 3300046794 Bacteria 2322
161 Ga0495600_0005130 3300046809 Bacteria 7873
162 Ga0495581_0035540 3300047315 Bacteria 2883
163 Ga0495604_0001578 3300047317 Bacteria 18780
164 Ga0495604_0025600 3300047317 Bacteria 4699
165 Ga0495636_0009316 3300047318 Bacteria 3865
166 Ga0495636_0010244 3300047318 Bacteria 3698
167 Ga0495674_0091891 3300047319 Bacteria 2592
168 Ga0495676_0004491 3300047321 Bacteria 12747
169 Ga0495676_0036916 3300047321 Bacteria 4074
170 Ga0495676_0037034 3300047321 Bacteria 4066
171 Ga0495676_0061583 3300047321 Bacteria 2934
172 Ga0495683_0028398 3300047323 Bacteria 2860
173 Ga0495687_008206 3300047443 Bacteria 6013
174 Ga0495687_018371 3300047443 Bacteria 3458
175 Ga0495675_0014952 3300047444 Bacteria 4907
176 Ga0495675_0017150 3300047444 Bacteria 4584
177 Ga0495679_000983 3300047446 Bacteria 17581
178 Ga0495685_000133 3300047447 Bacteria 25839
179 Ga0495685_002466 3300047447 Bacteria 5797
180 Ga0495685_020001 3300047447 Bacteria 2300
181 Ga0495681_0000219 3300047470 Bacteria 47683
182 Ga0495681_0001292 3300047470 Bacteria 18958
183 Ga0495684_0039094 3300047471 Bacteria 3637
184 Ga0495686_0047758 3300047472 Bacteria 2702
185 Ga0495593_0004621 3300047673 Bacteria 8182
186 Ga0495602_0118664 3300048088 Bacteria 2133
187 Ga0495614_0013960 3300048089 Bacteria 3521
188 Ga0495614_0022930 3300048089 Bacteria 2691
189 Ga0496117_0013083 3300048920 Bacteria 7265
190 Ga0496119_0019460 3300048922 Bacteria 5000
191 Ga0496120_0005642 3300048923 Bacteria 9913
192 Ga0496122_0080423 3300048925 Bacteria 2272
193 Ga0496123_0025485 3300048926 Bacteria 4457
194 Ga0496124_0000772 3300048927 Bacteria 52180
195 Ga0496124_0087277 3300048927 Bacteria 2551
196 Ga0496125_0002513 3300048928 Bacteria 23692
197 Ga0496125_0009608 3300048928 Bacteria 9891
198 Ga0496126_0001155 3300048929 Bacteria 43745
199 Ga0501034_0004181 3300049571 Bacteria 16111
200 Ga0501034_0045203 3300049571 Bacteria 4450
201 Ga0501036_0000170 3300049572 Bacteria 42985
202 Ga0501036_0046202 3300049572 Bacteria 3687
203 Ga0501037_0004187 3300049573 Bacteria 10460
204 Ga0501038_0002494 3300049574 Bacteria 17131
205 Ga0501038_0006542 3300049574 Bacteria 10780
206 Ga0501038_0307269 3300049574 Bacteria 1243
207 Ga0501042_0002573 3300049578 Bacteria 11151
208 Ga0501043_0000866 3300049579 Bacteria 26823
209 Ga0501043_0090032 3300049579 Bacteria 2412
210 Ga0501047_0002697 3300049581 Bacteria 16895
211 Ga0501047_0065301 3300049581 Bacteria 3508
212 Ga0501048_0001538 3300049582 Bacteria 17507
213 Ga0501073_0027049 3300049589 Bacteria 4105
214 Ga0501074_0001528 3300049590 Bacteria 15658
215 Ga0501074_0023329 3300049590 Bacteria 4498
216 Ga0501080_0070221 3300049742 Bacteria 3257
217 Ga0501080_0376672 3300049742 Bacteria 1279
218 Ga0501044_0009150 3300049823 Bacteria 10816
219 Ga0501044_0040775 3300049823 Bacteria 4837
220 nmdc:mga05p37_23378_c1 3300050507 Bacteria 7499
221 nmdc:mga0n895_13739_c1 3300050512 Bacteria 7320
222 nmdc:mga0n895_59064_c1 3300050512 Bacteria 3784
223 nmdc:mga0rr50_181671_c1 3300050513 Unclassified 1720
224 nmdc:mga08x19_139_c1 3300050514 Bacteria 64397
225 Ga0495655_0000879 3300053083 Bacteria 4690
226 Ga0495619_0072649 3300053085 Bacteria 2304
227 Ga0500652_001401 3300053131 Bacteria 7512
228 Ga0500658_0002151 3300053134 Bacteria 7660
229 Ga0500616_0003280 3300053153 Bacteria 12491
230 Ga0501084_0022252 3300054114 Bacteria 5290
231 2912762470 2912757875 Bacteria 7940295
232 2510284742 2510065053 Bacteria 5005518
233 2510295055 2510065055 Bacteria 5037935
234 2510312120 2510065058 Bacteria 5005894
235 2547410930 2547132111 Bacteria 8013147
236 2585296282 2582581312 Bacteria 7308206
237 2585307094 2582581313 Bacteria 10042643
238 2599399446 2599185167 Bacteria 6353609
239 2599454142 2599185179 Bacteria 6611171
240 2599513932 2599185190 Bacteria 6285678
241 2599519117 2599185191 Bacteria 6297582
242 2599892989 2599185290 Bacteria 6289611
243 2616900233 2616644941 Bacteria 8510691
244 2643763723 2643221548 Bacteria 8053412
245 2643903297 2643221578 Bacteria 9213798
246 2643941628 2643221587 Bacteria 7586415
247 2644017436 2643221601 Bacteria 7493239
248 2644173602 2643221631 Bacteria 8168043
249 2644386594 2643221670 Bacteria 6497041
250 2644404192 2643221673 Bacteria 9196637
251 2644428712 2643221677 Bacteria 7584031
252 2644461842 2643221682 Bacteria 6743283
253 2748018147 2747842501 Bacteria 5293829
254 2774131409 2773857672 Bacteria 4993178
255 2784590085 2784132148 Bacteria 8627943
256 2785371180 2784746768 Bacteria 10036182
257 2786672371 2786546132 Bacteria 10419719
258 2804845084 2802429296 Bacteria 7227771
259 2808843718 2808606359 Bacteria 9866990
260 2809233782 2808606448 Bacteria 8656184
261 2819694912 2818991463 Bacteria 7948711
262 2819740887 2818991472 Bacteria 10089953
263 2862179285 2862178590 Bacteria 8583590
264 2862287409 2862281513 Bacteria 9621493
265 2862292705 2862290372 Bacteria 7471434
266 2862577821 2862574272 Bacteria 10567477
267 2867433041 2867428634 Bacteria 9590268
268 2873154384 2873151551 Bacteria 8625867
269 2875396372 2875391855 Bacteria 7600475
270 2877679413 2877676314 Bacteria 9512378
271 2883825868 2883821847 Bacteria 5121194
272 2888376499 2888373701 Bacteria 5098052
273 2917834278 2917832318 Bacteria 5346010
274 2918506194 2918501144 Bacteria 8668083
275 2919053977 2919051321 Bacteria 4210889
276 2919127826 2919125081 Bacteria 5385106
277 2919415637 2919414237 Bacteria 5429133
278 2919474221 2919468124 Bacteria 9133025
279 2919707950 2919704043 Bacteria 5560311
280 2931393159 2931390751 Bacteria 6273349
281 2935391645 2935390628 Bacteria 7043367
282 2946027037 2946024296 Bacteria 3508095
283 2946048221 2946045630 Bacteria 8527308
284 2946069544 2946064051 Bacteria 8957905
285 2954678639 2954673503 Bacteria 9685905
286 2954685518 2954682443 Bacteria 9862841
287 2954714618 2954711539 Bacteria 10867210
288 2954724564 2954721474 Bacteria 10456478
289 2954737254 2954731030 Bacteria 10243860
290 2954743487 2954740390 Bacteria 10229294
291 2954756106 2954749733 Bacteria 10366972
292 2954762441 2954759201 Bacteria 9358192
293 2966601144 2966598605 Bacteria 7676064
294 2974298572 2974298342 Bacteria 4840922
295 2984500814 2984499530 Bacteria 5020881
296 2984505737 2984504281 Bacteria 5262371
297 2995467380 2995463766 Bacteria 8577691
298 3006498708 3006493962 Bacteria 8825450
299 8004022583 8004021418 Bacteria 4313954
300 8008577456 8008574985 Bacteria 7815457
301 8016732319 8016728285 Bacteria 5263933
302 8023625402 8023623736 Bacteria 8593882
303 8025483352 8025478263 Bacteria 8209203
304 8025537617 8025530807 Bacteria 8495698
305 8056211290 8056207758 Bacteria 8639239
306 8056448190 8056447290 Bacteria 7680491
307 8056672152 8056667051 Bacteria 6953971
308 rootH1_10012590
309 rootH2_10025881
310 rootL2_10055804
311 rootH1_10188674
312 Ga0006562J51391_1126477
313 Ga0006562J51391_1126478
314 Ga0058692_1000015
315 Ga0070666_10026408
316 Ga0070689_100186431
317 Ga0070668_100012801
318 Ga0070669_100044451
319 Ga0070669_100118464
320 Ga0070674_100042210
321 Ga0070674_100098844
322 Ga0070674_100140166
323 Ga0070709_10003415
324 Ga0070713_100000098
325 Ga0070662_100006595
326 Ga0068853_100001124
327 Ga0068853_100007623
328 Ga0068853_100010213
329 Ga0070695_100093570
330 Ga0070664_100056951
331 Ga0068857_100005681
332 Ga0068856_100000185
333 Ga0068852_100030988
334 Ga0068859_100065291
335 Ga0068864_100114296
336 Ga0068851_10000101
337 Ga0068851_10011814
338 Ga0068862_100020954
339 Ga0068862_100088276
340 Ga0070712_100000408
341 Ga0070712_100001103
342 Ga0075434_100037417
343 Ga0075436_100000092
344 Ga0097620_100065292
345 Ga0075435_100196553
346 Ga0105251_10003281
347 Ga0105244_10005394
348 Ga0105240_10004424
349 Ga0105245_10187263
350 Ga0105241_10036964
351 Ga0105241_10065659
352 Ga0105237_10006823
353 Ga0105238_10000922
354 Ga0157373_10006776
355 Ga0157369_10003858
356 Ga0157369_10027210
357 Ga0157375_10024504
358 Ga0182008_10000784
359 Ga0157379_10033675
360 Ga0182005_1004127
361 Ga0183367_1002
362 Ga0209257_1000270
363 Ga0207655_1036204
364 Ga0207713_1000996
365 Ga0207680_10019426
366 Ga0207699_10000212
367 Ga0207695_10016347
368 Ga0207693_10000357
369 Ga0207693_10001052
370 Ga0207681_10006960
371 Ga0207681_10077644
372 Ga0207681_10086169
373 Ga0207659_10086951
374 Ga0207700_10000010
375 Ga0207706_10000462
376 Ga0207706_10056418
377 Ga0207669_10026004
378 Ga0207669_10110172
379 Ga0207669_10127300
380 Ga0207639_10007275
381 Ga0207639_10014205
382 Ga0207702_10000174
383 Ga0207702_10001287
384 Ga0207675_100064234
385 Ga0207675_100085577
386 Ga0207675_100389717
387 Ga0207683_10008387
388 Ga0209371_1000011
389 Ga0209371_1009032
390 Ga0268265_10148556
391 Ga0265318_10000474
392 Ga0307517_10001976
393 Ga0307517_10150849
394 Ga0307515_10000573
395 Ga0268256_1000011
396 Ga0268256_1015645
397 Ga0307511_10002022
398 Ga0307512_10024486
399 Ga0265320_10000214
400 Ga0265325_10002698
401 Ga0265339_10028793
402 Ga0265327_10000280
403 Ga0307513_10028424
404 Ga0307509_10041350
405 Ga0307509_10203807
406 Ga0307509_10207528
407 Ga0307508_10025810
408 Ga0307508_10039603
409 Ga0307514_10037781
410 Ga0307514_10065232
411 Ga0265314_10008043
412 Ga0307516_10022807
413 Ga0307516_10023805
414 Ga0307507_10049651
415 Ga0307510_10110325
416 Ga0395900_0012620
417 Ga0395900_0058291
418 Ga0395900_0252508
419 Ga0395898_0053737
420 Ga0395905_0332350
421 Ga0436365_1926998
422 Ga0439448_0008577
423 Ga0439455_0004331
424 Ga0439463_003082
425 Ga0450903_003283
426 Ga0439458_0002589
427 Ga0466960_0014746
428 Ga0466960_0100826
429 Ga0495603_0003723
430 Ga0495603_0003955
431 Ga0495603_0019500
432 Ga0495603_0043382
433 Ga0495629_0017057
434 Ga0495629_0111504
435 Ga0495638_0074707
436 Ga0495651_0019455
437 Ga0495580_0094520
438 Ga0495582_0059413
439 Ga0495662_0014678
440 Ga0495662_0019302
441 Ga0495664_0005459
442 Ga0495585_0059594
443 Ga0495594_0003669
444 Ga0495594_0026186
445 Ga0495618_0035229
446 Ga0495630_0036066
447 Ga0495643_0006810
448 Ga0495654_0013813
449 Ga0495640_0127640
450 Ga0495587_0007921
451 Ga0495622_0006450
452 Ga0495622_0011883
453 Ga0495622_0042465
454 Ga0495633_0037610
455 Ga0495634_0020871
456 Ga0495611_0017584
457 Ga0495625_0004099
458 Ga0495635_0014376
459 Ga0495588_0005539
460 Ga0495623_0002496
461 Ga0495646_0001763
462 Ga0495613_0004855
463 Ga0495613_0109024
464 Ga0495670_0001259
465 Ga0495671_0043472
466 Ga0495671_0072063
467 Ga0495589_0040611
468 Ga0495600_0005130
469 Ga0495581_0035540
470 Ga0495604_0001578
471 Ga0495604_0025600
472 Ga0495636_0009316
473 Ga0495636_0010244
474 Ga0495674_0091891
475 Ga0495676_0004491
476 Ga0495676_0036916
477 Ga0495676_0037034
478 Ga0495676_0061583
479 Ga0495683_0028398
480 Ga0495687_008206
481 Ga0495687_018371
482 Ga0495675_0014952
483 Ga0495675_0017150
484 Ga0495679_000983
485 Ga0495685_000133
486 Ga0495685_002466
487 Ga0495685_020001
488 Ga0495681_0000219
489 Ga0495681_0001292
490 Ga0495684_0039094
491 Ga0495686_0047758
492 Ga0495593_0004621
493 Ga0495602_0118664
494 Ga0495614_0013960
495 Ga0495614_0022930
496 Ga0496117_0013083
497 Ga0496119_0019460
498 Ga0496120_0005642
499 Ga0496122_0080423
500 Ga0496123_0025485
501 Ga0496124_0000772
502 Ga0496124_0087277
503 Ga0496125_0002513
504 Ga0496125_0009608
505 Ga0496126_0001155
506 Ga0501034_0004181
507 Ga0501034_0045203
508 Ga0501036_0000170
509 Ga0501036_0046202
510 Ga0501037_0004187
511 Ga0501038_0002494
512 Ga0501038_0006542
513 Ga0501038_0307269
514 Ga0501042_0002573
515 Ga0501043_0000866
516 Ga0501043_0090032
517 Ga0501047_0002697
518 Ga0501047_0065301
519 Ga0501048_0001538
520 Ga0501073_0027049
521 Ga0501074_0001528
522 Ga0501074_0023329
523 Ga0501080_0070221
524 Ga0501080_0376672
525 Ga0501044_0009150
526 Ga0501044_0040775
527 nmdc:mga05p37_23378_c1
528 nmdc:mga0n895_13739_c1
529 nmdc:mga0n895_59064_c1
530 nmdc:mga0rr50_181671_c1
531 nmdc:mga08x19_139_c1
532 Ga0495655_0000879
533 Ga0495619_0072649
534 Ga0500652_001401
535 Ga0500658_0002151
536 Ga0500616_0003280
537 Ga0501084_0022252
538 2912762470
539 2510284742
540 2510295055
541 2510312120
542 2547410930
543 2585296282
544 2585307094
545 2599399446
546 2599454142
547 2599513932
548 2599519117
549 2599892989
550 2616900233
551 2643763723
552 2643903297
553 2643941628
554 2644017436
555 2644173602
556 2644386594
557 2644404192
558 2644428712
559 2644461842
560 2748018147
561 2774131409
562 2784590085
563 2785371180
564 2786672371
565 2804845084
566 2808843718
567 2809233782
568 2819694912
569 2819740887
570 2862179285
571 2862287409
572 2862292705
573 2862577821
574 2867433041
575 2873154384
576 2875396372
577 2877679413
578 2883825868
579 2888376499
580 2917834278
581 2918506194
582 2919053977
583 2919127826
584 2919415637
585 2919474221
586 2919707950
587 2931393159
588 2935391645
589 2946027037
590 2946048221
591 2946069544
592 2954678639
593 2954685518
594 2954714618
595 2954724564
596 2954737254
597 2954743487
598 2954756106
599 2954762441
600 2966601144
601 2974298572
602 2984500814
603 2984505737
604 2995467380
605 3006498708
606 8004022583
607 8008577456
608 8016732319
609 8023625402
610 8025483352
611 8025537617
612 8056211290
613 8056448190
614 8056672152

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00324

AA_permease

Amino acid permease

70

488

0.91

PF13520

AA_permease_2

Amino acid permease

70

488

0.81

Structural Annotation

Top 5 Hits

ID Description Score Start End
6f34-assembly1.cif.gz_A crystal structure of a bacterial cationic amino acid transporter (cat) homologue bound to arginine. 0.8494 11 442
5oqt-assembly1.cif.gz_A crystal structure of a bacterial cationic amino acid transporter (cat) homologue 0.8494 11 442
3gia-assembly1.cif.gz_A crystal structure of apct transporter 0.834 14 444
3ob6-assembly1.cif.gz_A structure of adic(n101a) in the open-to-out arg+ bound conformation 0.8331 17 448
3gi8-assembly1.cif.gz_C crystal structure of apct k158a transporter bound to 7f11 monoclonal fab fragment 0.8311 14 441
ID Description Score Start End Superfamily
af_P9WQM3_13_431_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.9271 13 444 1.20.1740.10
af_P0AA47_14_445_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.9229 13 440 1.20.1740.10
af_P24207_19_458_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.9061 13 444 1.20.1740.10
af_P0AA47_14_445_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8983 13 440 1.20.1740.10
af_P9WQM3_13_431_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.8931 13 444 1.20.1740.10
ID Description Score Start End GO Terms
AF-A0A6G2N9T8-F1-model_v4 deleted 0.9839 9 448
AF-A0A7K2GG55-F1-model_v4 Amino acid permease 0.9835 14 447 GO:0016020
GO:0055085
AF-A0A7K3FZ65-F1-model_v4 Amino acid permease 0.9834 23 446 GO:0016020
GO:0055085
AF-A0A6G2N9T8-F1-model_v4 deleted 0.9773 9 448
AF-A0A7K2GG55-F1-model_v4 Amino acid permease 0.9725 14 447 GO:0016020
GO:0055085

Map