F396259

General Info

Members Datasets Scaffolds Average Seq Length
302 175 269 183

Family's Representative Sequence

Representative Sequence 3300002987|JGI25159J45721_1000835|JGI25159J45721_10008355
Length 190
Sequence MARVIAEREDVIPMLAEVFRTYGFEGASLARITEGTRLGKGSIYHFFPGGKEEMAAAVLSQIDDWFRQQVFDPLRQGRNGAEAERGIAAMFDQVERYFLAGRKVCLVGVFALGNERDRFADAVRDYFAVWIDALEAALLRAGRRKADARALAEEAVGGIQGALVLSRAFDRTEMFTDTLKRLRSRLLPAQ

Samples

Sample ID Description Type Environment
1 2521172590 Herbaspirillum sp. GW103 Isolate Rhizosphere
2 2599185352 Sinorhizobium sp. NFACC03 Isolate Rhizoplane
3 2643221638 Duganella sp. Root336D2 Isolate Unclassified
4 2643221645 Massilia sp. Root351 Isolate Unclassified
5 2643221664 Massilia sp. Root418 Isolate Unclassified
6 2643221723 Ensifer sp. Root278 Isolate Unclassified
7 2738541280 Massilia sp. GV090 Isolate Unclassified
8 2738541297 Duganella sp. GV083 Isolate Unclassified
9 2738541300 Massilia sp. GV016 Isolate Unclassified
10 2738541357 Duganella sp. GV053 Isolate Unclassified
11 2738543003 Duganella sp. GV066 Isolate Unclassified
12 2738543018 Massilia sp. GV045 Isolate Unclassified
13 2738543026 Duganella sp. GV089 Isolate Unclassified
14 2738543029 Duganella sp. GV039 Isolate Unclassified
15 2738543030 Massilia sp. GV097 Isolate Unclassified
16 2818991449 Herbaspirillum huttiense 1147 Isolate Unclassified
17 2842711865 Duganella sp. R-73148 Isolate Unclassified
18 2857558681 Duganella sp. R-74565 Isolate Unclassified
19 2857564685 Duganella sp. R-74599 Isolate Unclassified
20 2904424332 Duganella sp. 1411 Isolate Rhizosphere
21 2904439833 Herbaspirillum sp. 1589 Isolate Rhizosphere
22 2904530477 Herbaspirillum huttiense 611 Isolate Unclassified
23 2904584206 Herbaspirillum sp. 1050 Isolate Unclassified
24 2904589729 Herbaspirillum sp. 1130 Isolate Unclassified
25 2904601388 Herbaspirillum sp. 1273 Isolate Rhizosphere
26 2919079590 Herbaspirillum sp. 1173 Isolate Unclassified
27 2919476304 Duganella sp. 3397 Isolate Unclassified
28 2928027323 Sphingomonas sp. 1185 Isolate Unclassified
29 2928130867 Herbaspirillum seropedicae 1977 Isolate Unclassified
30 2941499720 Ensifer sp. 4252 Isolate Rhizosphere
31 2984555340 Sphingomonas sp. SORGH_AS789 Isolate Aerial Root
32 2984564862 Sphingomonas sp. SORGH_AS870 Isolate Aerial Root
33 2993356040 Sphingomonas sp. SORGH_AS742 Isolate Aerial Root
34 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
35 3300002739 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA Metagenome Endosphere
36 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
37 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
38 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
39 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
40 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
41 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
42 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
43 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
44 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
45 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
46 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
47 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
48 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
49 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
50 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
51 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
52 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
53 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
54 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
55 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
56 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
57 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
58 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
59 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
60 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
61 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
62 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
63 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
64 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
65 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
66 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
67 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
68 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
69 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
70 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
71 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
72 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
73 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
74 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
75 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
76 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
77 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
78 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
79 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
80 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
81 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
82 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
83 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
84 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
85 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
86 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
87 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
88 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
89 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
90 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
91 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
92 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
93 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
94 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
95 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
110 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
112 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
113 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
114 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
115 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
116 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
117 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
118 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
119 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
120 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
121 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
122 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
123 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
124 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
125 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
126 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
127 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
128 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
129 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
130 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
131 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
132 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
133 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
134 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
135 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
136 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
137 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
138 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
139 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
140 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
141 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
142 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
143 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
144 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
145 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
146 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
147 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
148 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
149 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
150 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
151 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
152 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
153 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
154 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
155 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
156 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
157 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
158 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
159 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
160 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
161 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
162 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
163 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
164 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
165 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
166 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
167 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
168 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
169 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
170 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
171 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
172 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
173 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
174 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
175 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.07
Metatranscriptomes 0
Isolates 10.93

Biome Distribution

Category Percentage (%)
Aerial Root 0.99
Bulb 0
Endosphere 11.92
Nodule 0.66
Rhizoplane 1.66
Rhizosphere 72.19
Stem 0
Stem Tuber 0
Unclassified 12.58

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25154J39366_1001662 3300002738 Bacteria 7383
2 JGI25158J39367_1000356 3300002739 Bacteria 9888
3 JGI25157J39369_1001993 3300002741 Bacteria 5980
4 JGI25150J39212_1008893 3300002774 Bacteria 1940
5 JGI25159J45721_1000835 3300002987 Bacteria 13430
6 JGI25153J46596_10049942 3300003215 Bacteria 1210
7 rootL2_10008814 3300003322 Bacteria 15810
8 rootH1_10233011 3300003323 Bacteria 1112
9 JGI25160J50197_1000020 3300003354 Bacteria 232739
10 JGI25161J50226_1000544 3300003374 Bacteria 16086
11 Ga0055526_1000016 3300003771 Bacteria 213710
12 Ga0055526_1000080 3300003771 Bacteria 87500
13 Ga0055526_1000467 3300003771 Bacteria 32128
14 Ga0055526_1000584 3300003771 Bacteria 28672
15 Ga0055537_1000467 3300003773 Bacteria 25506
16 Ga0055524_1003293 3300003775 Bacteria 7904
17 Ga0055534_1000009 3300003784 Bacteria 210256
18 Ga0055528_1000012 3300003790 Bacteria 182704
19 Ga0055543_1000163 3300004625 Bacteria 55480
20 Ga0055543_1012868 3300004625 Bacteria 1669
21 Ga0065165_1000013 3300005262 Bacteria 301887
22 Ga0065165_1000051 3300005262 Bacteria 194844
23 Ga0070658_10042323 3300005327 Bacteria 3678
24 Ga0070683_101143804 3300005329 Bacteria 748
25 Ga0070660_100212366 3300005339 Bacteria 1571
26 Ga0070661_100119771 3300005344 Bacteria 1971
27 Ga0070661_100155451 3300005344 Bacteria 1730
28 Ga0070662_100251884 3300005457 Bacteria 1420
29 Ga0068853_100739773 3300005539 Bacteria 939
30 Ga0070672_100823823 3300005543 Bacteria 817
31 Ga0068855_100000645 3300005563 Bacteria 42677
32 Ga0068855_100089668 3300005563 Bacteria 3550
33 Ga0068855_100104340 3300005563 Bacteria 3261
34 Ga0070664_100181518 3300005564 Bacteria 1870
35 Ga0068857_100488662 3300005577 Bacteria 1154
36 Ga0068854_100006918 3300005578 Bacteria 7234
37 Ga0068852_100369146 3300005616 Bacteria 1405
38 Ga0068852_101150596 3300005616 Bacteria 797
39 Ga0081455_10284312 3300005937 Bacteria 1194
40 Ga0068871_100291119 3300006358 Bacteria 1431
41 Ga0079104_1047130 3300006946 Bacteria 976
42 Ga0105244_10019663 3300009036 Bacteria 3763
43 Ga0105240_10021185 3300009093 Bacteria 8652
44 Ga0105245_10067970 3300009098 Bacteria 3228
45 Ga0105243_10016096 3300009148 Bacteria 5659
46 Ga0105241_10199578 3300009174 Bacteria 1670
47 Ga0105242_10016051 3300009176 Bacteria 5817
48 Ga0105237_10002535 3300009545 Bacteria 22609
49 Ga0105238_10000213 3300009551 Bacteria 64398
50 Ga0105238_10027489 3300009551 Bacteria 5798
51 Ga0105238_10685677 3300009551 Bacteria 1036
52 Ga0105239_10010163 3300010375 Bacteria 10546
53 Ga0105239_11024967 3300010375 Bacteria 949
54 Ga0105239_11169860 3300010375 Bacteria 886
55 Ga0157374_10228655 3300013296 Bacteria 1827
56 Ga0157372_10073046 3300013307 Bacteria 3866
57 Ga0182006_1000023 3300015261 Bacteria 275031
58 Ga0182006_1001685 3300015261 Bacteria 12930
59 Ga0182005_1000154 3300015265 Bacteria 48125
60 Ga0213872_10000020 3300021361 Bacteria 159607
61 Ga0213872_10137566 3300021361 Bacteria 1073
62 Ga0209436_100498 3300025208 Bacteria 17278
63 Ga0209437_104390 3300025233 Bacteria 2490
64 Ga0207425_1009705 3300025245 Bacteria 2381
65 Ga0209646_1000072 3300025246 Bacteria 224823
66 Ga0209646_1007397 3300025246 Bacteria 1797
67 Ga0209026_1000013 3300025250 Bacteria 415633
68 Ga0209148_1023196 3300025254 Bacteria 990
69 Ga0209759_1000241 3300025256 Bacteria 81497
70 Ga0209565_1000015 3300025263 Bacteria 494091
71 Ga0209673_1000017 3300025273 Bacteria 492994
72 Ga0209130_1000034 3300025284 Bacteria 302439
73 Ga0209130_1000063 3300025284 Bacteria 198142
74 Ga0209675_1000012 3300025291 Bacteria 494061
75 Ga0209564_1000002 3300025295 Bacteria 1636803
76 Ga0209564_1000007 3300025295 Bacteria 1028582
77 Ga0209564_1000016 3300025295 Bacteria 613131
78 Ga0209758_1001543 3300025297 Bacteria 26465
79 Ga0209256_1000346 3300025299 Bacteria 75456
80 Ga0207426_1000006 3300025302 Bacteria 1025969
81 Ga0207705_10020222 3300025909 Bacteria 4761
82 Ga0207705_10238697 3300025909 Bacteria 1384
83 Ga0207654_10020071 3300025911 Bacteria 3537
84 Ga0207695_10002101 3300025913 Bacteria 30256
85 Ga0207671_10034125 3300025914 Bacteria 3782
86 Ga0207657_10068638 3300025919 Bacteria 3011
87 Ga0207649_10082582 3300025920 Bacteria 2083
88 Ga0207649_10254891 3300025920 Bacteria 1265
89 Ga0207694_10000171 3300025924 Bacteria 66876
90 Ga0207694_10356993 3300025924 Bacteria 1211
91 Ga0207690_10132787 3300025932 Bacteria 1824
92 Ga0207706_10057424 3300025933 Bacteria 3429
93 Ga0207686_10044657 3300025934 Bacteria 2722
94 Ga0207709_10035044 3300025935 Bacteria 2964
95 Ga0207709_11295407 3300025935 Bacteria 602
96 Ga0207679_10068013 3300025945 Bacteria 2674
97 Ga0207667_10000191 3300025949 Bacteria 89641
98 Ga0207667_10021186 3300025949 Bacteria 7207
99 Ga0207667_10043247 3300025949 Bacteria 4781
100 Ga0207640_10040282 3300025981 Bacteria 2962
101 Ga0207639_10755945 3300026041 Bacteria 904
102 Ga0207698_10228283 3300026142 Bacteria 1688
103 Ga0209281_1003680 3300027111 Bacteria 4915
104 Ga0307515_10103318 3300028794 Bacteria 3417
105 Ga0316181_1227055 3300030744 Bacteria 1154
106 Ga0265314_10048859 3300031711 Bacteria 2966
107 Ga0395899_0029208 3300037312 Bacteria 4147
108 Ga0395900_0089565 3300037418 Bacteria 3162
109 Ga0395905_0195323 3300037471 Bacteria 1897
110 Ga0395901_0451562 3300038443 Bacteria 1314
111 Ga0436361_0304919 3300039447 Bacteria 17033
112 Ga0436361_1128786 3300039447 Bacteria 5579
113 Ga0495617_000004 3300046452 Bacteria 511274
114 Ga0495617_004520 3300046452 Bacteria 5046
115 Ga0495617_027846 3300046452 Bacteria 1900
116 Ga0495627_000008 3300046453 Bacteria 572150
117 Ga0495590_0060585 3300046457 Bacteria 1325
118 Ga0495590_0082867 3300046457 Bacteria 1130
119 Ga0495638_0000042 3300046460 Bacteria 232752
120 Ga0495638_0109148 3300046460 Bacteria 1645
121 Ga0495638_0123739 3300046460 Bacteria 1526
122 Ga0495638_0201978 3300046460 Bacteria 1121
123 Ga0495650_0000042 3300046471 Bacteria 357244
124 Ga0495650_0000086 3300046471 Bacteria 235224
125 Ga0495650_0000165 3300046471 Bacteria 146945
126 Ga0495650_0000438 3300046471 Bacteria 66853
127 Ga0495650_0033394 3300046471 Bacteria 2290
128 Ga0495650_0034562 3300046471 Bacteria 2235
129 Ga0495605_0000022 3300046474 Bacteria 248321
130 Ga0495639_0004615 3300046475 Bacteria 5911
131 Ga0495584_0000492 3300046491 Bacteria 27206
132 Ga0495585_0000350 3300046492 Bacteria 44650
133 Ga0495585_0047878 3300046492 Bacteria 2379
134 Ga0495607_0002701 3300046501 Bacteria 14153
135 Ga0495607_0012446 3300046501 Bacteria 5617
136 Ga0495607_0027685 3300046501 Bacteria 3501
137 Ga0495607_0038988 3300046501 Bacteria 2840
138 Ga0495607_0122365 3300046501 Bacteria 1364
139 Ga0495583_0000185 3300046506 Bacteria 105958
140 Ga0495583_0000390 3300046506 Bacteria 67184
141 Ga0495583_0020089 3300046506 Bacteria 3469
142 Ga0495606_0000014 3300046507 Bacteria 289347
143 Ga0495606_0000564 3300046507 Bacteria 58780
144 Ga0495606_0003096 3300046507 Bacteria 18095
145 Ga0495606_0004900 3300046507 Bacteria 13103
146 Ga0495606_0057576 3300046507 Bacteria 2502
147 Ga0495610_0000010 3300046512 Bacteria 538821
148 Ga0495610_0001745 3300046512 Bacteria 19036
149 Ga0495610_0001957 3300046512 Bacteria 17721
150 Ga0495610_0032200 3300046512 Bacteria 2727
151 Ga0495610_0034028 3300046512 Bacteria 2628
152 Ga0495610_0038668 3300046512 Bacteria 2420
153 Ga0495610_0048349 3300046512 Bacteria 2088
154 Ga0495610_0095051 3300046512 Bacteria 1344
155 Ga0495610_0300214 3300046512 Bacteria 619
156 Ga0495616_0001994 3300046513 Bacteria 13730
157 Ga0495616_0005652 3300046513 Bacteria 7656
158 Ga0495616_0102702 3300046513 Bacteria 1339
159 Ga0495616_0183212 3300046513 Bacteria 929
160 Ga0495637_0000084 3300046520 Bacteria 73422
161 Ga0495643_0000137 3300046522 Bacteria 117968
162 Ga0495644_0003818 3300046523 Bacteria 5924
163 Ga0495648_0000061 3300046524 Bacteria 151604
164 Ga0495648_0001521 3300046524 Bacteria 22662
165 Ga0495648_0006273 3300046524 Bacteria 9730
166 Ga0495648_0035266 3300046524 Bacteria 3244
167 Ga0495648_0049552 3300046524 Bacteria 2573
168 Ga0495648_0113659 3300046524 Bacteria 1468
169 Ga0495654_0000002 3300046530 Bacteria 1021205
170 Ga0495654_0010709 3300046530 Bacteria 4980
171 Ga0495654_0020647 3300046530 Bacteria 3432
172 Ga0495609_0000240 3300046538 Bacteria 52192
173 Ga0495609_0002384 3300046538 Bacteria 11571
174 Ga0495609_0006490 3300046538 Bacteria 5962
175 Ga0495609_0023250 3300046538 Bacteria 2850
176 Ga0495597_0000276 3300046542 Bacteria 46947
177 Ga0495597_0008690 3300046542 Bacteria 5075
178 Ga0495597_0031395 3300046542 Bacteria 2418
179 Ga0495622_0000025 3300046557 Bacteria 146973
180 Ga0495622_0000272 3300046557 Bacteria 39196
181 Ga0495622_0077849 3300046557 Bacteria 1527
182 Ga0495633_0000098 3300046558 Bacteria 117269
183 Ga0495633_0000220 3300046558 Bacteria 70701
184 Ga0495633_0001657 3300046558 Bacteria 16789
185 Ga0495633_0002754 3300046558 Bacteria 12159
186 Ga0495633_0015569 3300046558 Bacteria 3943
187 Ga0495633_0020870 3300046558 Bacteria 3286
188 Ga0495633_0029527 3300046558 Bacteria 2667
189 Ga0495656_0034362 3300046615 Bacteria 2075
190 Ga0495668_0000088 3300046616 Bacteria 151503
191 Ga0495668_0001270 3300046616 Bacteria 25076
192 Ga0495668_0003088 3300046616 Bacteria 12882
193 Ga0495668_0010722 3300046616 Bacteria 5535
194 Ga0495611_0011279 3300046648 Bacteria 3789
195 Ga0495611_0027942 3300046648 Bacteria 2470
196 Ga0495611_0041835 3300046648 Bacteria 2044
197 Ga0495625_0000701 3300046660 Bacteria 47483
198 Ga0495625_0008303 3300046660 Bacteria 8874
199 Ga0495625_0014708 3300046660 Bacteria 6231
200 Ga0495625_0016170 3300046660 Bacteria 5877
201 Ga0495625_0053237 3300046660 Bacteria 2896
202 Ga0495625_0054115 3300046660 Bacteria 2867
203 Ga0495625_0078895 3300046660 Bacteria 2298
204 Ga0495625_0161028 3300046660 Bacteria 1503
205 Ga0495625_0171078 3300046660 Bacteria 1450
206 Ga0495659_0000009 3300046664 Bacteria 95820
207 Ga0495659_0000248 3300046664 Bacteria 22283
208 Ga0495659_0236170 3300046664 Bacteria 758
209 Ga0495661_0022083 3300046665 Bacteria 4142
210 Ga0495661_0290940 3300046665 Bacteria 820
211 Ga0495669_0001128 3300046684 Bacteria 11072
212 Ga0495670_0001215 3300046691 Bacteria 12525
213 Ga0495670_0017634 3300046691 Bacteria 3515
214 Ga0495670_0302517 3300046691 Bacteria 857
215 Ga0495671_0000002 3300046692 Bacteria 1136189
216 Ga0495671_0000433 3300046692 Bacteria 33219
217 Ga0495671_0022694 3300046692 Bacteria 3285
218 Ga0495671_0046079 3300046692 Bacteria 2181
219 Ga0495671_0056269 3300046692 Bacteria 1947
220 Ga0495671_0057074 3300046692 Bacteria 1932
221 Ga0495649_0009203 3300046694 Bacteria 5887
222 Ga0495649_0021974 3300046694 Bacteria 3573
223 Ga0495649_0055140 3300046694 Bacteria 2148
224 Ga0495649_0146973 3300046694 Bacteria 1239
225 Ga0495660_0000598 3300046810 Bacteria 28529
226 Ga0495660_0113988 3300046810 Bacteria 1376
227 Ga0495660_0115407 3300046810 Bacteria 1365
228 Ga0495660_0217603 3300046810 Bacteria 902
229 Ga0495636_0014465 3300047318 Bacteria 3137
230 Ga0495636_0023240 3300047318 Bacteria 2508
231 Ga0495636_0046804 3300047318 Bacteria 1805
232 Ga0495672_0000120 3300047320 Bacteria 121804
233 Ga0495672_0000347 3300047320 Bacteria 59349
234 Ga0495672_0001903 3300047320 Bacteria 19832
235 Ga0495672_0109636 3300047320 Bacteria 1483
236 Ga0495683_0008232 3300047323 Bacteria 5591
237 Ga0495687_000007 3300047443 Bacteria 552679
238 Ga0495687_001240 3300047443 Bacteria 24364
239 Ga0495677_0006740 3300047445 Bacteria 4321
240 Ga0495677_0007565 3300047445 Bacteria 4054
241 Ga0495677_0047743 3300047445 Bacteria 1572
242 Ga0495685_000036 3300047447 Bacteria 55288
243 Ga0495673_0000005 3300047469 Bacteria 943364
244 Ga0495673_0000026 3300047469 Bacteria 476378
245 Ga0495673_0000028 3300047469 Bacteria 473418
246 Ga0495673_0146948 3300047469 Bacteria 914
247 Ga0495681_0004525 3300047470 Bacteria 9477
248 Ga0495681_0308943 3300047470 Bacteria 610
249 Ga0495686_0160080 3300047472 Bacteria 1316
250 Ga0495686_0261623 3300047472 Bacteria 968
251 Ga0496100_0716776 3300048903 Bacteria 781
252 Ga0496103_0026961 3300048906 Bacteria 3478
253 Ga0496107_0262439 3300048910 Bacteria 1285
254 Ga0496114_0032688 3300048917 Bacteria 4284
255 Ga0496116_0005905 3300048919 Bacteria 11236
256 Ga0496124_0019476 3300048927 Bacteria 6315
257 Ga0496124_0024766 3300048927 Bacteria 5448
258 Ga0496124_0097154 3300048927 Bacteria 2392
259 Ga0496126_0045228 3300048929 Bacteria 4048
260 Ga0495678_000502 3300049459 Bacteria 38555
261 Ga0495678_009729 3300049459 Bacteria 4724
262 Ga0495678_010427 3300049459 Bacteria 4519
263 Ga0495682_0000412 3300049460 Bacteria 30433
264 Ga0495682_0012662 3300049460 Bacteria 3229
265 Ga0495682_0015737 3300049460 Bacteria 2865
266 Ga0501269_008952 3300049766 Bacteria 1213
267 Ga0500594_0074100 3300053118 Bacteria 1006
268 Ga0500618_000225 3300053125 Bacteria 44386
269 Ga0500586_000401 3300053145 Bacteria 8667

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046457 Ga0495590_0082867 Ga0495590_0082867_443_967 165
2 3300046460 Ga0495638_0109148 Ga0495638_0109148_423_947 165
3 3300046616 Ga0495668_0010722 Ga0495668_0010722_1499_2023 165
4 3300046660 Ga0495625_0014708 Ga0495625_0014708_1757_2281 165
5 3300046684 Ga0495669_0001128 Ga0495669_0001128_5877_6401 165
6 3300046694 Ga0495649_0055140 Ga0495649_0055140_127_651 165
7 3300046506 Ga0495583_0020089 Ga0495583_0020089_699_1247 166
8 3300046513 Ga0495616_0005652 Ga0495616_0005652_1446_1994 166
9 3300046538 Ga0495609_0000240 Ga0495609_0000240_24791_25339 166
10 3300046542 Ga0495597_0031395 Ga0495597_0031395_309_857 166
11 3300046691 Ga0495670_0302517 Ga0495670_0302517_68_616 166
12 3300046810 Ga0495660_0217603 Ga0495660_0217603_80_628 166
13 3300047318 Ga0495636_0014465 Ga0495636_0014465_1840_2388 166
14 3300047470 Ga0495681_0004525 Ga0495681_0004525_6299_6847 166
15 3300046523 Ga0495644_0003818 Ga0495644_0003818_5389_5907 172
16 3300046648 Ga0495611_0011279 Ga0495611_0011279_18_536 172
17 3300046648 Ga0495611_0041835 Ga0495611_0041835_1509_2027 172
18 3300046660 Ga0495625_0161028 Ga0495625_0161028_968_1486 172
19 3300046660 Ga0495625_0171078 Ga0495625_0171078_915_1433 172
20 3300046692 Ga0495671_0057074 Ga0495671_0057074_1404_1922 172
21 3300047318 Ga0495636_0023240 Ga0495636_0023240_17_535 172
22 3300049460 Ga0495682_0012662 Ga0495682_0012662_2694_3212 172
23 3300046692 Ga0495671_0046079 Ga0495671_0046079_1065_1652 175
24 iso_pu_bacteria 2919476304 2919479778 176
25 3300025233 Ga0209437_104390 Ga0209437_1043902 177
26 3300046452 Ga0495617_004520 Ga0495617_004520_2230_2781 179
27 3300046452 Ga0495617_027846 Ga0495617_027846_1209_1760 179
28 3300046460 Ga0495638_0000042 Ga0495638_0000042_41997_42542 179
29 3300046471 Ga0495650_0000438 Ga0495650_0000438_24426_24971 179
30 3300046475 Ga0495639_0004615 Ga0495639_0004615_403_948 179
31 3300046491 Ga0495584_0000492 Ga0495584_0000492_16714_17280 179
32 3300046492 Ga0495585_0047878 Ga0495585_0047878_1730_2281 179
33 3300046501 Ga0495607_0002701 Ga0495607_0002701_1451_2008 179
34 3300046501 Ga0495607_0012446 Ga0495607_0012446_901_1452 179
35 3300046501 Ga0495607_0027685 Ga0495607_0027685_440_991 179
36 3300046501 Ga0495607_0038988 Ga0495607_0038988_1913_2464 179
37 3300046506 Ga0495583_0000185 Ga0495583_0000185_26817_27368 179
38 3300046506 Ga0495583_0000390 Ga0495583_0000390_41941_42486 179
39 3300046512 Ga0495610_0095051 Ga0495610_0095051_167_718 179
40 3300046513 Ga0495616_0001994 Ga0495616_0001994_4078_4629 179
41 3300046513 Ga0495616_0102702 Ga0495616_0102702_451_1002 179
42 3300046513 Ga0495616_0183212 Ga0495616_0183212_213_764 179
43 3300046524 Ga0495648_0000061 Ga0495648_0000061_73259_73804 179
44 3300046524 Ga0495648_0001521 Ga0495648_0001521_4280_4831 179
45 3300046538 Ga0495609_0002384 Ga0495609_0002384_1269_1820 179
46 3300046557 Ga0495622_0000272 Ga0495622_0000272_13891_14436 179
47 3300046557 Ga0495622_0077849 Ga0495622_0077849_878_1429 179
48 3300046558 Ga0495633_0000098 Ga0495633_0000098_59017_59562 179
49 3300046558 Ga0495633_0001657 Ga0495633_0001657_11975_12526 179
50 3300046558 Ga0495633_0020870 Ga0495633_0020870_2574_3125 179
51 3300046615 Ga0495656_0034362 Ga0495656_0034362_1117_1668 179
52 3300046648 Ga0495611_0027942 Ga0495611_0027942_1766_2317 179
53 3300046660 Ga0495625_0000701 Ga0495625_0000701_42140_42685 179
54 3300046664 Ga0495659_0000248 Ga0495659_0000248_19589_20140 179
55 3300046665 Ga0495661_0290940 Ga0495661_0290940_245_796 179
56 3300046691 Ga0495670_0001215 Ga0495670_0001215_4603_5154 179
57 3300046691 Ga0495670_0017634 Ga0495670_0017634_590_1141 179
58 3300047320 Ga0495672_0001903 Ga0495672_0001903_4255_4806 179
59 3300047320 Ga0495672_0109636 Ga0495672_0109636_57_608 179
60 3300047443 Ga0495687_001240 Ga0495687_001240_2635_3186 179
61 3300047445 Ga0495677_0006740 Ga0495677_0006740_1233_1784 179
62 3300047445 Ga0495677_0007565 Ga0495677_0007565_3177_3728 179
63 3300047445 Ga0495677_0047743 Ga0495677_0047743_790_1329 179
64 3300047447 Ga0495685_000036 Ga0495685_000036_30413_30964 179
65 3300047469 Ga0495673_0146948 Ga0495673_0146948_289_840 179
66 3300049459 Ga0495678_009729 Ga0495678_009729_3944_4495 179
67 3300049459 Ga0495678_010427 Ga0495678_010427_1819_2364 179
68 3300049460 Ga0495682_0000412 Ga0495682_0000412_2954_3505 179
69 3300049460 Ga0495682_0015737 Ga0495682_0015737_192_743 179
70 3300002738 JGI25154J39366_1001662 JGI25154J39366_10016622 180
71 3300002739 JGI25158J39367_1000356 JGI25158J39367_10003567 180
72 3300002741 JGI25157J39369_1001993 JGI25157J39369_10019932 180
73 3300002774 JGI25150J39212_1008893 JGI25150J39212_10088932 180
74 3300002987 JGI25159J45721_1000835 JGI25159J45721_10008355 180
75 3300003215 JGI25153J46596_10049942 JGI25153J46596_100499422 180
76 3300003322 rootL2_10008814 rootL2_1000881413 180
77 3300003323 rootH1_10233011 rootH1_102330112 180
78 3300003354 JGI25160J50197_1000020 JGI25160J50197_1000020155 180
79 3300003374 JGI25161J50226_1000544 JGI25161J50226_10005449 180
80 3300003771 Ga0055526_1000016 Ga0055526_100001649 180
81 3300003771 Ga0055526_1000080 Ga0055526_100008054 180
82 3300003771 Ga0055526_1000467 Ga0055526_100046711 180
83 3300003771 Ga0055526_1000584 Ga0055526_100058418 180
84 3300003773 Ga0055537_1000467 Ga0055537_100046720 180
85 3300003775 Ga0055524_1003293 Ga0055524_10032934 180
86 3300003784 Ga0055534_1000009 Ga0055534_1000009135 180
87 3300003790 Ga0055528_1000012 Ga0055528_100001245 180
88 3300004625 Ga0055543_1000163 Ga0055543_100016312 180
89 3300004625 Ga0055543_1012868 Ga0055543_10128681 180
90 3300005262 Ga0065165_1000013 Ga0065165_100001362 180
91 3300005262 Ga0065165_1000051 Ga0065165_100005161 180
92 3300005327 Ga0070658_10042323 Ga0070658_100423231 180
93 3300005329 Ga0070683_101143804 Ga0070683_1011438041 180
94 3300005339 Ga0070660_100212366 Ga0070660_1002123661 180
95 3300005344 Ga0070661_100119771 Ga0070661_1001197712 180
96 3300005344 Ga0070661_100155451 Ga0070661_1001554511 180
97 3300005457 Ga0070662_100251884 Ga0070662_1002518843 180
98 3300005539 Ga0068853_100739773 Ga0068853_1007397732 180
99 3300005543 Ga0070672_100823823 Ga0070672_1008238232 180
100 3300005563 Ga0068855_100000645 Ga0068855_10000064541 180
101 3300005563 Ga0068855_100089668 Ga0068855_1000896684 180
102 3300005563 Ga0068855_100104340 Ga0068855_1001043404 180
103 3300005564 Ga0070664_100181518 Ga0070664_1001815183 180
104 3300005577 Ga0068857_100488662 Ga0068857_1004886622 180
105 3300005578 Ga0068854_100006918 Ga0068854_1000069185 180
106 3300005616 Ga0068852_100369146 Ga0068852_1003691462 180
107 3300005616 Ga0068852_101150596 Ga0068852_1011505962 180
108 3300005937 Ga0081455_10284312 Ga0081455_102843121 180
109 3300006358 Ga0068871_100291119 Ga0068871_1002911191 180
110 3300006946 Ga0079104_1047130 Ga0079104_10471302 180
111 3300009036 Ga0105244_10019663 Ga0105244_100196632 180
112 3300009093 Ga0105240_10021185 Ga0105240_100211853 180
113 3300009098 Ga0105245_10067970 Ga0105245_100679704 180
114 3300009148 Ga0105243_10016096 Ga0105243_100160964 180
115 3300009174 Ga0105241_10199578 Ga0105241_101995782 180
116 3300009176 Ga0105242_10016051 Ga0105242_100160517 180
117 3300009545 Ga0105237_10002535 Ga0105237_1000253519 180
118 3300009551 Ga0105238_10000213 Ga0105238_1000021341 180
119 3300009551 Ga0105238_10027489 Ga0105238_100274896 180
120 3300009551 Ga0105238_10685677 Ga0105238_106856772 180
121 3300010375 Ga0105239_10010163 Ga0105239_100101635 180
122 3300010375 Ga0105239_11024967 Ga0105239_110249672 180
123 3300010375 Ga0105239_11169860 Ga0105239_111698602 180
124 3300013296 Ga0157374_10228655 Ga0157374_102286553 180
125 3300013307 Ga0157372_10073046 Ga0157372_100730464 180
126 3300015261 Ga0182006_1000023 Ga0182006_100002317 180
127 3300015261 Ga0182006_1001685 Ga0182006_10016859 180
128 3300015265 Ga0182005_1000154 Ga0182005_100015427 180
129 3300021361 Ga0213872_10000020 Ga0213872_10000020140 180
130 3300021361 Ga0213872_10137566 Ga0213872_101375662 180
131 3300025208 Ga0209436_100498 Ga0209436_1004989 180
132 3300025245 Ga0207425_1009705 Ga0207425_10097053 180
133 3300025246 Ga0209646_1000072 Ga0209646_1000072110 180
134 3300025246 Ga0209646_1007397 Ga0209646_10073972 180
135 3300025250 Ga0209026_1000013 Ga0209026_1000013329 180
136 3300025254 Ga0209148_1023196 Ga0209148_10231961 180
137 3300025256 Ga0209759_1000241 Ga0209759_100024164 180
138 3300025263 Ga0209565_1000015 Ga0209565_1000015410 180
139 3300025273 Ga0209673_1000017 Ga0209673_1000017301 180
140 3300025284 Ga0209130_1000034 Ga0209130_100003461 180
141 3300025284 Ga0209130_1000063 Ga0209130_1000063137 180
142 3300025291 Ga0209675_1000012 Ga0209675_100001272 180
143 3300025295 Ga0209564_1000002 Ga0209564_10000021357 180
144 3300025295 Ga0209564_1000007 Ga0209564_1000007747 180
145 3300025295 Ga0209564_1000016 Ga0209564_1000016185 180
146 3300025297 Ga0209758_1001543 Ga0209758_100154325 180
147 3300025299 Ga0209256_1000346 Ga0209256_100034659 180
148 3300025302 Ga0207426_1000006 Ga0207426_1000006435 180
149 3300025909 Ga0207705_10020222 Ga0207705_100202223 180
150 3300025909 Ga0207705_10238697 Ga0207705_102386972 180
151 3300025911 Ga0207654_10020071 Ga0207654_100200713 180
152 3300025913 Ga0207695_10002101 Ga0207695_1000210117 180
153 3300025914 Ga0207671_10034125 Ga0207671_100341254 180
154 3300025919 Ga0207657_10068638 Ga0207657_100686382 180
155 3300025920 Ga0207649_10082582 Ga0207649_100825823 180
156 3300025920 Ga0207649_10254891 Ga0207649_102548913 180
157 3300025924 Ga0207694_10000171 Ga0207694_100001718 180
158 3300025924 Ga0207694_10356993 Ga0207694_103569931 180
159 3300025932 Ga0207690_10132787 Ga0207690_101327872 180
160 3300025933 Ga0207706_10057424 Ga0207706_100574243 180
161 3300025934 Ga0207686_10044657 Ga0207686_100446573 180
162 3300025935 Ga0207709_10035044 Ga0207709_100350443 180
163 3300025935 Ga0207709_11295407 Ga0207709_112954071 180
164 3300025945 Ga0207679_10068013 Ga0207679_100680133 180
165 3300025949 Ga0207667_10000191 Ga0207667_1000019140 180
166 3300025949 Ga0207667_10021186 Ga0207667_100211862 180
167 3300025949 Ga0207667_10043247 Ga0207667_100432473 180
168 3300025981 Ga0207640_10040282 Ga0207640_100402823 180
169 3300026041 Ga0207639_10755945 Ga0207639_107559452 180
170 3300026142 Ga0207698_10228283 Ga0207698_102282832 180
171 3300027111 Ga0209281_1003680 Ga0209281_10036804 180
172 3300028794 Ga0307515_10103318 Ga0307515_101033181 180
173 3300030744 Ga0316181_1227055 Ga0316181_12270551 180
174 3300031711 Ga0265314_10048859 Ga0265314_100488592 180
175 3300037312 Ga0395899_0029208 Ga0395899_0029208_446_1006 180
176 3300037418 Ga0395900_0089565 Ga0395900_0089565_351_911 180
177 3300037471 Ga0395905_0195323 Ga0395905_0195323_223_783 180
178 3300038443 Ga0395901_0451562 Ga0395901_0451562_350_910 180
179 3300039447 Ga0436361_0304919 Ga0436361_0304919_9637_10191 180
180 3300039447 Ga0436361_1128786 Ga0436361_1128786_1085_1666 180
181 3300046452 Ga0495617_000004 Ga0495617_000004_192985_193542 180
182 3300046453 Ga0495627_000008 Ga0495627_000008_471129_471689 180
183 3300046457 Ga0495590_0060585 Ga0495590_0060585_105_665 180
184 3300046460 Ga0495638_0123739 Ga0495638_0123739_361_903 180
185 3300046460 Ga0495638_0201978 Ga0495638_0201978_172_714 180
186 3300046471 Ga0495650_0000042 Ga0495650_0000042_295362_295910 180
187 3300046471 Ga0495650_0000086 Ga0495650_0000086_178780_179337 180
188 3300046471 Ga0495650_0000165 Ga0495650_0000165_114041_114595 180
189 3300046471 Ga0495650_0033394 Ga0495650_0033394_749_1303 180
190 3300046471 Ga0495650_0034562 Ga0495650_0034562_329_886 180
191 3300046474 Ga0495605_0000022 Ga0495605_0000022_133447_133995 180
192 3300046492 Ga0495585_0000350 Ga0495585_0000350_8341_8898 180
193 3300046501 Ga0495607_0122365 Ga0495607_0122365_532_1080 180
194 3300046507 Ga0495606_0000014 Ga0495606_0000014_47101_47649 180
195 3300046507 Ga0495606_0000564 Ga0495606_0000564_41348_41902 180
196 3300046507 Ga0495606_0003096 Ga0495606_0003096_5748_6290 180
197 3300046507 Ga0495606_0004900 Ga0495606_0004900_10403_10945 180
198 3300046507 Ga0495606_0057576 Ga0495606_0057576_1659_2207 180
199 3300046512 Ga0495610_0000010 Ga0495610_0000010_278521_279078 180
200 3300046512 Ga0495610_0001745 Ga0495610_0001745_1025_1573 180
201 3300046512 Ga0495610_0001957 Ga0495610_0001957_16108_16650 180
202 3300046512 Ga0495610_0032200 Ga0495610_0032200_1731_2273 180
203 3300046512 Ga0495610_0034028 Ga0495610_0034028_1140_1682 180
204 3300046512 Ga0495610_0038668 Ga0495610_0038668_1570_2112 180
205 3300046512 Ga0495610_0048349 Ga0495610_0048349_220_762 180
206 3300046512 Ga0495610_0300214 Ga0495610_0300214_36_587 180
207 3300046520 Ga0495637_0000084 Ga0495637_0000084_43890_44444 180
208 3300046522 Ga0495643_0000137 Ga0495643_0000137_33292_33846 180
209 3300046524 Ga0495648_0006273 Ga0495648_0006273_9170_9712 180
210 3300046524 Ga0495648_0035266 Ga0495648_0035266_772_1329 180
211 3300046524 Ga0495648_0049552 Ga0495648_0049552_96_653 180
212 3300046524 Ga0495648_0113659 Ga0495648_0113659_568_1122 180
213 3300046530 Ga0495654_0000002 Ga0495654_0000002_293455_294009 180
214 3300046530 Ga0495654_0010709 Ga0495654_0010709_1473_2030 180
215 3300046530 Ga0495654_0020647 Ga0495654_0020647_1579_2127 180
216 3300046538 Ga0495609_0006490 Ga0495609_0006490_3601_4161 180
217 3300046538 Ga0495609_0023250 Ga0495609_0023250_1614_2156 180
218 3300046542 Ga0495597_0000276 Ga0495597_0000276_18473_19015 180
219 3300046542 Ga0495597_0008690 Ga0495597_0008690_327_875 180
220 3300046557 Ga0495622_0000025 Ga0495622_0000025_63961_64515 180
221 3300046558 Ga0495633_0000220 Ga0495633_0000220_43434_43976 180
222 3300046558 Ga0495633_0002754 Ga0495633_0002754_6188_6730 180
223 3300046558 Ga0495633_0015569 Ga0495633_0015569_1763_2311 180
224 3300046558 Ga0495633_0029527 Ga0495633_0029527_1974_2531 180
225 3300046616 Ga0495668_0000088 Ga0495668_0000088_82763_83311 180
226 3300046616 Ga0495668_0001270 Ga0495668_0001270_24135_24683 180
227 3300046616 Ga0495668_0003088 Ga0495668_0003088_8550_9107 180
228 3300046660 Ga0495625_0008303 Ga0495625_0008303_2480_3028 180
229 3300046660 Ga0495625_0016170 Ga0495625_0016170_2059_2601 180
230 3300046660 Ga0495625_0053237 Ga0495625_0053237_350_892 180
231 3300046660 Ga0495625_0054115 Ga0495625_0054115_1731_2273 180
232 3300046660 Ga0495625_0078895 Ga0495625_0078895_888_1445 180
233 3300046664 Ga0495659_0000009 Ga0495659_0000009_65065_65613 180
234 3300046664 Ga0495659_0236170 Ga0495659_0236170_160_714 180
235 3300046665 Ga0495661_0022083 Ga0495661_0022083_340_897 180
236 3300046692 Ga0495671_0000002 Ga0495671_0000002_326678_327235 180
237 3300046692 Ga0495671_0000433 Ga0495671_0000433_1750_2298 180
238 3300046692 Ga0495671_0022694 Ga0495671_0022694_293_850 180
239 3300046692 Ga0495671_0056269 Ga0495671_0056269_932_1474 180
240 3300046694 Ga0495649_0009203 Ga0495649_0009203_1921_2463 180
241 3300046694 Ga0495649_0021974 Ga0495649_0021974_904_1446 180
242 3300046694 Ga0495649_0146973 Ga0495649_0146973_559_1113 180
243 3300046810 Ga0495660_0000598 Ga0495660_0000598_18138_18698 180
244 3300046810 Ga0495660_0113988 Ga0495660_0113988_330_878 180
245 3300046810 Ga0495660_0115407 Ga0495660_0115407_761_1318 180
246 3300047318 Ga0495636_0046804 Ga0495636_0046804_430_978 180
247 3300047320 Ga0495672_0000120 Ga0495672_0000120_101225_101773 180
248 3300047320 Ga0495672_0000347 Ga0495672_0000347_25626_26180 180
249 3300047323 Ga0495683_0008232 Ga0495683_0008232_4843_5400 180
250 3300047443 Ga0495687_000007 Ga0495687_000007_418963_419535 180
251 3300047469 Ga0495673_0000005 Ga0495673_0000005_184109_184669 180
252 3300047469 Ga0495673_0000026 Ga0495673_0000026_221300_221857 180
253 3300047469 Ga0495673_0000028 Ga0495673_0000028_168964_169506 180
254 3300047470 Ga0495681_0308943 Ga0495681_0308943_15_569 180
255 3300047472 Ga0495686_0160080 Ga0495686_0160080_538_1095 180
256 3300047472 Ga0495686_0261623 Ga0495686_0261623_20_568 180
257 3300048903 Ga0496100_0716776 Ga0496100_0716776_81_641 180
258 3300048906 Ga0496103_0026961 Ga0496103_0026961_2298_2852 180
259 3300048910 Ga0496107_0262439 Ga0496107_0262439_373_921 180
260 3300048917 Ga0496114_0032688 Ga0496114_0032688_2035_2589 180
261 3300048919 Ga0496116_0005905 Ga0496116_0005905_8387_8935 180
262 3300048927 Ga0496124_0019476 Ga0496124_0019476_1681_2241 180
263 3300048927 Ga0496124_0024766 Ga0496124_0024766_1328_1888 180
264 3300048927 Ga0496124_0097154 Ga0496124_0097154_1754_2314 180
265 3300048929 Ga0496126_0045228 Ga0496126_0045228_3287_3847 180
266 3300049459 Ga0495678_000502 Ga0495678_000502_2209_2763 180
267 3300049766 Ga0501269_008952 Ga0501269_008952_281_826 180
268 3300053118 Ga0500594_0074100 Ga0500594_0074100_168_716 180
269 3300053125 Ga0500618_000225 Ga0500618_000225_9966_10514 180
270 3300053145 Ga0500586_000401 Ga0500586_000401_1959_2501 180
271 iso_pu_bacteria 2521172590 2521559336 180
272 iso_pu_bacteria 2599185352 2600195423 180
273 iso_pu_bacteria 2643221638 2644215262 180
274 iso_pu_bacteria 2643221645 2644251974 180
275 iso_pu_bacteria 2643221664 2644360628 180
276 iso_pu_bacteria 2643221723 2644675981 180
277 iso_pu_bacteria 2738541280 2738740316 180
278 iso_pu_bacteria 2738541297 2738828972 180
279 iso_pu_bacteria 2738541300 2738843428 180
280 iso_pu_bacteria 2738541357 2739152768 180
281 iso_pu_bacteria 2738543003 2739194688 180
282 iso_pu_bacteria 2738543018 2739275499 180
283 iso_pu_bacteria 2738543026 2739321164 180
284 iso_pu_bacteria 2738543029 2739339405 180
285 iso_pu_bacteria 2738543030 2739344543 180
286 iso_pu_bacteria 2818991449 2819615872 180
287 iso_pu_bacteria 2842711865 2842714878 180
288 iso_pu_bacteria 2857558681 2857563039 180
289 iso_pu_bacteria 2857564685 2857567372 180
290 iso_pu_bacteria 2904424332 2904427392 180
291 iso_pu_bacteria 2904439833 2904443749 180
292 iso_pu_bacteria 2904530477 2904532654 180
293 iso_pu_bacteria 2904584206 2904585148 180
294 iso_pu_bacteria 2904589729 2904593497 180
295 iso_pu_bacteria 2904601388 2904605677 180
296 iso_pu_bacteria 2919079590 2919081473 180
297 iso_pu_bacteria 2928027323 2928028888 180
298 iso_pu_bacteria 2928130867 2928133844 180
299 iso_pu_bacteria 2941499720 2941502036 180
300 iso_pu_bacteria 2984555340 2984556350 180
301 iso_pu_bacteria 2984564862 2984565461 180
302 iso_pu_bacteria 2993356040 2993356553 180

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00440

TetR_N

Bacterial regulatory proteins, tetR family

15

58

0.96

PF21993

TetR_C_13_2

Transcriptional regulator LmrA/YxaF-like, C-terminal domain

83

181

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
3on4-assembly4.cif.gz_F crystal structure of tetr transcriptional regulator from legionella pneumophila 0.7778 1 180
3on4-assembly4.cif.gz_F crystal structure of tetr transcriptional regulator from legionella pneumophila 0.7742 1 180
3f1b-assembly1.cif.gz_A-2 the crystal structure of a tetr-like transcriptional regulator from rhodococcus sp. rha1. 0.7716 4 178
6nsm-assembly1.cif.gz_B tetr family transcriptional regulator cifr c99t-c107s-c181r cysteines mutant complexed with 26bp double-strand operator dna 0.7662 3 176
2g7s-assembly1.cif.gz_A-2 the crystal structure of transcriptional regulator, tetr family, from agrobacterium tumefaciens 0.7651 3 178
ID Description Score Start End Superfamily
4x1eB01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9009 7 54 1.10.10.60
4xk4D01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8867 4 54 1.10.10.60
3locA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8865 4 54 1.10.10.60
2ns8A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8824 7 58 1.10.10.60
2i10B01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.8695 7 57 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A264T395-F1-model_v4 deleted 0.9607 1 83
AF-A3X1Y3-F1-model_v4 Uncharacterized protein 0.947 1 179 GO:0003677
GO:0006355
AF-A0A3S0DW64-F1-model_v4 TetR/AcrR family transcriptional regulator 0.9433 1 178 GO:0003677
GO:0006355
AF-A0A0D6PR75-F1-model_v4 deleted 0.9402 51 180
AF-A0A252BQW7-F1-model_v4 HTH tetR-type domain-containing protein 0.9391 1 179 GO:0003677
GO:0006355

Feature Viewer

pLDDT pTM Quality
87.36 0.82 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map