F396062

General Info

Members Datasets Scaffolds Average Seq Length
301 178 602 226

Family's Representative Sequence

Representative Sequence 3300044735|Ga0466968_0003132|Ga0466968_0003132_405_1157
Length 250
Sequence MLPSRRSSSEFGWASSTNVPRRALEPAGVALVDKPRGPSSFAVVAQIRRVTGARTGHAGTLDPFATGLLLLLSGRATKLAAWLVGLDKRYRTEIDLTCRTSTGDPEGEIVERCAPPGEQKLAEWLARLRGEVELPIPAASAVKIGGERAYRLARRGVEVEMPLRRSMVHALEVIAYTGERVTLDLHVSSGTYVRSLAIALGGHCATLRRTTVGPFSVDDAVAPEAFTAARLLPEDEVLERVKAARRASGT

Samples

Sample ID Description Type Environment
1 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
5 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
6 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
7 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
10 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
11 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
14 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
15 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
16 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
17 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
18 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
19 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
20 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
21 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
24 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
25 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
28 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
29 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
30 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
31 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
32 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
33 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
34 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
35 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
36 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
37 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
38 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
39 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
40 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
41 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
42 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
45 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
46 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
47 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
48 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
49 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
50 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
51 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
52 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
53 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
54 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
55 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
77 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
78 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
79 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
80 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
81 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
82 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
83 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
84 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
85 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
86 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
87 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
88 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
89 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
90 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
91 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
92 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
93 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
94 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
95 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
96 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
97 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
98 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
99 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
100 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
101 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
102 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
103 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
104 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
105 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
106 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
107 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
108 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
109 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
110 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
111 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
112 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
113 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
114 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
115 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
116 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
117 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
118 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
119 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
120 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
121 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
122 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
123 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
124 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
125 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
126 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
127 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
128 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
129 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
130 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
131 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
132 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
133 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
134 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
135 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
136 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
137 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
138 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
139 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
140 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
141 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
142 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
143 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
144 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
145 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
146 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
147 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
148 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
149 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
150 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
151 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
152 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
153 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
154 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
155 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
156 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
157 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
158 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
159 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
160 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
161 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
162 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
163 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
164 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
165 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
166 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
167 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
168 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
169 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
170 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
171 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
172 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
173 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
174 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
175 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
176 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
177 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
178 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.34
Metatranscriptomes 0.66
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1
Nodule 0
Rhizoplane 18.6
Rhizosphere 80.4
Stem 0
Stem Tuber 0
Unclassified 12.96

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466968_0003132 3300044735 Bacteria 6104
2 Ga0070683_100183644 3300005329 Bacteria 1985
3 Ga0070682_100026480 3300005337 Bacteria 3471
4 Ga0070660_100008678 3300005339 Bacteria 7120
5 Ga0070660_100151059 3300005339 Bacteria 1867
6 Ga0070661_100354953 3300005344 Bacteria 1151
7 Ga0070659_100101941 3300005366 Bacteria 2310
8 Ga0070709_10393803 3300005434 Bacteria 1033
9 Ga0070714_100011073 3300005435 Bacteria 7146
10 Ga0070714_100179292 3300005435 Bacteria 1927
11 Ga0070714_100627115 3300005435 Bacteria 1034
12 Ga0070713_100007405 3300005436 Bacteria 7701
13 Ga0070713_100031566 3300005436 Bacteria 4221
14 Ga0070713_100036183 3300005436 Bacteria 3982
15 Ga0070713_100059971 3300005436 Bacteria 3180
16 Ga0070710_10014445 3300005437 Bacteria 3977
17 Ga0070711_100023137 3300005439 Bacteria 4037
18 Ga0070681_10041928 3300005458 Bacteria 4588
19 Ga0070681_10107468 3300005458 Bacteria 2731
20 Ga0068867_100327187 3300005459 Bacteria 1272
21 Ga0070707_100000689 3300005468 Bacteria 33507
22 Ga0070698_100119796 3300005471 Bacteria 2592
23 Ga0070698_100145619 3300005471 Bacteria 2318
24 Ga0070699_100662302 3300005518 Bacteria 953
25 Ga0070679_100876979 3300005530 Unclassified 841
26 Ga0070684_100271167 3300005535 Unclassified 1553
27 Ga0070672_100132274 3300005543 Bacteria 2051
28 Ga0070693_100068165 3300005547 Bacteria 2088
29 Ga0070704_100071689 3300005549 Bacteria 2518
30 Ga0068855_100125756 3300005563 Bacteria 2931
31 Ga0070664_100291026 3300005564 Bacteria 1475
32 Ga0068857_100612222 3300005577 Bacteria 1030
33 Ga0068856_100324644 3300005614 Bacteria 1557
34 Ga0068856_100343682 3300005614 Unclassified 1510
35 Ga0068856_100947556 3300005614 Bacteria 879
36 Ga0068852_100032507 3300005616 Bacteria 4321
37 Ga0068863_100064568 3300005841 Bacteria 3462
38 Ga0081455_10032276 3300005937 Bacteria 4721
39 Ga0081539_10023505 3300005985 Bacteria 4036
40 Ga0070717_10007972 3300006028 Bacteria 7889
41 Ga0070717_10008814 3300006028 Bacteria 7553
42 Ga0070717_10089030 3300006028 Bacteria 2603
43 Ga0070717_10130663 3300006028 Bacteria 2159
44 Ga0070717_10169301 3300006028 Bacteria 1899
45 Ga0070717_10270652 3300006028 Bacteria 1505
46 Ga0075365_10014472 3300006038 Unclassified 4748
47 Ga0075432_10019857 3300006058 Bacteria 2297
48 Ga0070715_10007419 3300006163 Bacteria 3775
49 Ga0070716_100030438 3300006173 Bacteria 2928
50 Ga0070712_100056838 3300006175 Bacteria 2746
51 Ga0070712_100142162 3300006175 Bacteria 1833
52 Ga0070712_100227573 3300006175 Bacteria 1479
53 Ga0075431_100588801 3300006847 Bacteria 1097
54 Ga0075433_10017294 3300006852 Bacteria 5969
55 Ga0075434_100013806 3300006871 Bacteria 7702
56 Ga0075436_100001566 3300006914 Bacteria 15598
57 Ga0075435_100007518 3300007076 Bacteria 7776
58 Ga0075435_100036671 3300007076 Bacteria 3898
59 Ga0105240_10004117 3300009093 Bacteria 22320
60 Ga0111539_10383116 3300009094 Unclassified 1637
61 Ga0111539_11030764 3300009094 Unclassified 957
62 Ga0114129_10024900 3300009147 Bacteria 8485
63 Ga0105238_10219214 3300009551 Bacteria 1878
64 Ga0099796_10127540 3300010159 Unclassified 983
65 Ga0157369_10038876 3300013105 Bacteria 5201
66 Ga0157369_10067942 3300013105 Bacteria 3830
67 Ga0157369_10254994 3300013105 Bacteria 1830
68 Ga0157369_10422590 3300013105 Bacteria 1382
69 Ga0157369_10780649 3300013105 Unclassified 982
70 Ga0157374_10004478 3300013296 Bacteria 11728
71 Ga0157374_10190175 3300013296 Bacteria 2008
72 Ga0157374_10343792 3300013296 Bacteria 1481
73 Ga0163162_11607344 3300013306 Bacteria 741
74 Ga0157372_10033993 3300013307 Bacteria 5601
75 Ga0157372_10089214 3300013307 Bacteria 3503
76 Ga0182008_10056490 3300014497 Bacteria 1939
77 Ga0157377_10116167 3300014745 Unclassified 1615
78 Ga0157376_10046001 3300014969 Bacteria 3596
79 Ga0157376_10229892 3300014969 Bacteria 1722
80 Ga0206356_10240852 3300020070 Bacteria 1834
81 Ga0206353_10650170 3300020082 Bacteria 4808
82 Ga0207699_10038911 3300025906 Bacteria 2729
83 Ga0207707_10200197 3300025912 Bacteria 1741
84 Ga0207693_10008605 3300025915 Bacteria 8351
85 Ga0207693_10017675 3300025915 Bacteria 5685
86 Ga0207663_10020687 3300025916 Bacteria 3731
87 Ga0207660_10002318 3300025917 Bacteria 12538
88 Ga0207657_10111209 3300025919 Bacteria 2262
89 Ga0207649_10063093 3300025920 Bacteria 2338
90 Ga0207652_10270128 3300025921 Bacteria 1534
91 Ga0207646_10000502 3300025922 Bacteria 52324
92 Ga0207646_10473093 3300025922 Bacteria 1130
93 Ga0207694_10590074 3300025924 Unclassified 934
94 Ga0207687_10093365 3300025927 Unclassified 2200
95 Ga0207687_10576482 3300025927 Bacteria 946
96 Ga0207700_10025187 3300025928 Bacteria 4128
97 Ga0207700_10055570 3300025928 Bacteria 2976
98 Ga0207700_10134237 3300025928 Bacteria 2025
99 Ga0207664_10004545 3300025929 Bacteria 9406
100 Ga0207664_10118304 3300025929 Bacteria 2213
101 Ga0207664_10155534 3300025929 Bacteria 1946
102 Ga0207664_10185481 3300025929 Bacteria 1788
103 Ga0207690_10103992 3300025932 Bacteria 2034
104 Ga0207706_10443940 3300025933 Bacteria 1123
105 Ga0207665_10000653 3300025939 Bacteria 23307
106 Ga0207665_10170898 3300025939 Bacteria 1570
107 Ga0207665_10224645 3300025939 Unclassified 1378
108 Ga0207677_10168919 3300026023 Bacteria 1708
109 Ga0207677_10532604 3300026023 Unclassified 1021
110 Ga0207702_10073336 3300026078 Bacteria 2951
111 Ga0207702_10244366 3300026078 Bacteria 1683
112 Ga0207641_10369158 3300026088 Unclassified 1372
113 Ga0207683_10251071 3300026121 Bacteria 1614
114 Ga0207683_10290128 3300026121 Bacteria 1496
115 Ga0207698_10032734 3300026142 Bacteria 3770
116 Ga0207698_10223417 3300026142 Bacteria 1704
117 Ga0265319_1011960 3300028563 Bacteria 3527
118 Ga0265318_10003322 3300028577 Bacteria 8145
119 Ga0265338_10014299 3300028800 Bacteria 8843
120 Ga0265338_10016963 3300028800 Bacteria 7880
121 Ga0265338_10050999 3300028800 Bacteria 3733
122 Ga0265324_10056098 3300029957 Bacteria 1350
123 Ga0265320_10005178 3300031240 Bacteria 8410
124 Ga0265320_10081173 3300031240 Bacteria 1514
125 Ga0265325_10042446 3300031241 Bacteria 2378
126 Ga0265331_10115322 3300031250 Bacteria 1230
127 Ga0265316_10043484 3300031344 Bacteria 3579
128 Ga0265313_10045195 3300031595 Unclassified 2145
129 Ga0265314_10075707 3300031711 Bacteria 2238
130 Ga0265342_10084086 3300031712 Unclassified 1833
131 Ga0307410_10398218 3300031852 Unclassified 1112
132 Ga0307409_100962339 3300031995 Bacteria 870
133 Ga0307416_100350413 3300032002 Bacteria 1494
134 Ga0307411_10329380 3300032005 Bacteria 1237
135 Ga0316583_10012572 3300032133 Bacteria 3054
136 Ga0373937_0504952 3300036401 Unclassified 1149
137 Ga0395899_0010500 3300037312 Bacteria 7092
138 Ga0395899_0073478 3300037312 Bacteria 2500
139 Ga0395900_0002097 3300037418 Bacteria 22353
140 Ga0395900_0004678 3300037418 Bacteria 14428
141 Ga0395900_0126748 3300037418 Bacteria 2618
142 Ga0395900_0308456 3300037418 Bacteria 1566
143 Ga0395898_0007745 3300037466 Bacteria 11404
144 Ga0395898_0016204 3300037466 Bacteria 7633
145 Ga0395898_0101210 3300037466 Bacteria 2767
146 Ga0395898_0135726 3300037466 Bacteria 2356
147 Ga0395905_0000636 3300037471 Bacteria 46887
148 Ga0395905_0245329 3300037471 Bacteria 1673
149 Ga0395901_0000760 3300038443 Bacteria 36166
150 Ga0395901_0003643 3300038443 Bacteria 15534
151 Ga0395901_0139076 3300038443 Bacteria 2552
152 Ga0395901_0254550 3300038443 Bacteria 1829
153 Ga0439466_0076047 3300041411 Unclassified 1064
154 Ga0450907_005840 3300042146 Bacteria 2067
155 Ga0439446_0026844 3300042156 Bacteria 1651
156 Ga0466969_0012254 3300044656 Bacteria 4527
157 Ga0466969_0111803 3300044656 Bacteria 1278
158 Ga0466966_0003238 3300044684 Bacteria 10734
159 Ga0466966_0022683 3300044684 Bacteria 4117
160 Ga0466961_0003195 3300044693 Bacteria 10197
161 Ga0466961_0068128 3300044693 Bacteria 2260
162 Ga0466963_0000940 3300044694 Bacteria 14893
163 Ga0466963_0006247 3300044694 Bacteria 7037
164 Ga0466963_0026871 3300044694 Bacteria 3682
165 Ga0466963_0053138 3300044694 Bacteria 2689
166 Ga0466963_0181869 3300044694 Unclassified 1468
167 Ga0466963_0193171 3300044694 Bacteria 1422
168 Ga0466964_0049190 3300044706 Unclassified 1725
169 Ga0466964_0068936 3300044706 Bacteria 1490
170 Ga0466971_0002603 3300044719 Bacteria 7633
171 Ga0466968_0011331 3300044735 Bacteria 3471
172 Ga0466970_0348422 3300044765 Unclassified 840
173 Ga0466957_0028903 3300044842 Bacteria 3303
174 Ga0466960_0466560 3300044901 Bacteria 736
175 Ga0466959_0101293 3300045049 Bacteria 2061
176 Ga0466959_0252925 3300045049 Bacteria 1215
177 Ga0466958_0005754 3300045836 Bacteria 6700
178 Ga0466958_0017007 3300045836 Bacteria 4196
179 Ga0466958_0288880 3300045836 Unclassified 1052
180 Ga0466967_0056593 3300045976 Bacteria 3458
181 Ga0466967_0082326 3300045976 Bacteria 2908
182 Ga0466967_0104564 3300045976 Bacteria 2592
183 Ga0466967_0112895 3300045976 Archaea 2499
184 Ga0466967_0136587 3300045976 Bacteria 2280
185 Ga0466967_0174300 3300045976 Bacteria 2025
186 Ga0466967_0825884 3300045976 Unclassified 921
187 Ga0495641_0027493 3300046461 Bacteria 2766
188 Ga0495641_0120849 3300046461 Bacteria 1169
189 Ga0495651_0018134 3300046462 Bacteria 5450
190 Ga0495653_0086834 3300046463 Bacteria 2298
191 Ga0495582_0021401 3300046473 Bacteria 3539
192 Ga0495605_0034565 3300046474 Bacteria 2559
193 Ga0495664_0072710 3300046477 Bacteria 2055
194 Ga0495664_0351530 3300046477 Unclassified 887
195 Ga0495584_0023938 3300046491 Bacteria 3096
196 Ga0495585_0024075 3300046492 Bacteria 3493
197 Ga0495596_0040667 3300046500 Bacteria 1835
198 Ga0495607_0032679 3300046501 Bacteria 3173
199 Ga0495618_0099487 3300046514 Bacteria 1861
200 Ga0495630_0042986 3300046517 Bacteria 3374
201 Ga0495637_0108793 3300046520 Bacteria 1076
202 Ga0495644_0004185 3300046523 Bacteria 5673
203 Ga0495644_0101032 3300046523 Bacteria 1091
204 Ga0495663_0043934 3300046525 Bacteria 1366
205 Ga0495652_0036776 3300046529 Bacteria 4253
206 Ga0495654_0206057 3300046530 Bacteria 839
207 Ga0495609_0041008 3300046538 Bacteria 2082
208 Ga0495645_0034768 3300046543 Bacteria 3674
209 Ga0495633_0086406 3300046558 Bacteria 1459
210 Ga0495633_0152347 3300046558 Unclassified 1068
211 Ga0495667_0025293 3300046559 Bacteria 4001
212 Ga0495667_0034687 3300046559 Unclassified 3374
213 Ga0495667_0069511 3300046559 Bacteria 2298
214 Ga0495656_0057354 3300046615 Unclassified 1686
215 Ga0495635_0018678 3300046663 Bacteria 4836
216 Ga0495657_0067300 3300046675 Unclassified 2351
217 Ga0495657_0085030 3300046675 Bacteria 2040
218 Ga0495599_0177686 3300046678 Bacteria 1312
219 Ga0495647_0023042 3300046681 Bacteria 2255
220 Ga0495613_0024334 3300046689 Bacteria 4511
221 Ga0495624_0061596 3300046690 Bacteria 2350
222 Ga0495589_0012532 3300046794 Bacteria 4390
223 Ga0495581_0015460 3300047315 Bacteria 4431
224 Ga0495604_0273538 3300047317 Bacteria 1143
225 Ga0495676_0095546 3300047321 Bacteria 2211
226 Ga0495680_0434245 3300047322 Bacteria 901
227 Ga0495677_0032648 3300047445 Bacteria 1896
228 Ga0495684_0002726 3300047471 Bacteria 13968
229 Ga0496100_0370193 3300048903 Bacteria 1086
230 Ga0496101_0041453 3300048904 Bacteria 3282
231 Ga0496101_0110175 3300048904 Bacteria 2071
232 Ga0496101_0154239 3300048904 Bacteria 1758
233 Ga0496101_0407479 3300048904 Unclassified 1071
234 Ga0496102_0021759 3300048905 Bacteria 5674
235 Ga0496102_0281509 3300048905 Bacteria 1567
236 Ga0496102_0397834 3300048905 Bacteria 1295
237 Ga0496104_0020881 3300048907 Bacteria 6006
238 Ga0496104_0036539 3300048907 Bacteria 4592
239 Ga0496104_0191236 3300048907 Bacteria 1958
240 Ga0496104_0233638 3300048907 Bacteria 1750
241 Ga0496105_0000705 3300048908 Bacteria 22625
242 Ga0496105_0010091 3300048908 Bacteria 7415
243 Ga0496105_0019435 3300048908 Bacteria 5478
244 Ga0496106_0006191 3300048909 Bacteria 8850
245 Ga0496106_0295054 3300048909 Bacteria 1300
246 Ga0496107_0022059 3300048910 Bacteria 4498
247 Ga0496107_0026261 3300048910 Bacteria 4127
248 Ga0496107_0136613 3300048910 Unclassified 1811
249 Ga0496107_0141676 3300048910 Bacteria 1777
250 Ga0496107_0181969 3300048910 Bacteria 1561
251 Ga0496108_0005215 3300048911 Bacteria 10498
252 Ga0496108_0012501 3300048911 Bacteria 6912
253 Ga0496108_0051982 3300048911 Bacteria 3432
254 Ga0496108_0394173 3300048911 Bacteria 1209
255 Ga0496108_0578042 3300048911 Unclassified 979
256 Ga0496109_0001424 3300048912 Bacteria 19854
257 Ga0496109_0016383 3300048912 Bacteria 6478
258 Ga0496109_0072663 3300048912 Bacteria 3160
259 Ga0496109_0102015 3300048912 Bacteria 2663
260 Ga0496109_0125596 3300048912 Unclassified 2392
261 Ga0496110_0012441 3300048913 Bacteria 6998
262 Ga0496110_0263669 3300048913 Bacteria 1568
263 Ga0496111_0010000 3300048914 Bacteria 6348
264 Ga0496111_0010294 3300048914 Bacteria 6267
265 Ga0496111_0015068 3300048914 Bacteria 5296
266 Ga0496111_0196843 3300048914 Bacteria 1498
267 Ga0496111_0421727 3300048914 Unclassified 986
268 Ga0496112_0015217 3300048915 Bacteria 7170
269 Ga0496112_0092535 3300048915 Bacteria 2993
270 Ga0496112_0126179 3300048915 Bacteria 2530
271 Ga0496112_0361677 3300048915 Unclassified 1393
272 Ga0496112_0451189 3300048915 Unclassified 1224
273 Ga0496112_0898769 3300048915 Bacteria 808
274 Ga0496113_0048760 3300048916 Bacteria 3152
275 Ga0496113_0059537 3300048916 Bacteria 2877
276 Ga0496113_0132787 3300048916 Bacteria 1955
277 Ga0496114_0003342 3300048917 Bacteria 12329
278 Ga0496114_0075200 3300048917 Unclassified 2845
279 Ga0496114_0120392 3300048917 Bacteria 2257
280 Ga0496114_0125821 3300048917 Bacteria 2209
281 Ga0496114_0168480 3300048917 Bacteria 1908
282 Ga0496115_0011180 3300048918 Bacteria 6725
283 Ga0496115_0142083 3300048918 Bacteria 1981
284 Ga0496115_0450521 3300048918 Bacteria 1039
285 Ga0501034_0147784 3300049571 Bacteria 2327
286 Ga0501038_0636622 3300049574 Bacteria 804
287 Ga0501042_0557007 3300049578 Bacteria 833
288 Ga0501047_0052534 3300049581 Bacteria 3939
289 Ga0501083_0204504 3300049744 Bacteria 1288
290 nmdc:mga0yw44_21600_c1 3300050492 Unclassified 3594
291 nmdc:mga06z11_217799_c1 3300050494 Bacteria 1114
292 nmdc:mga05p37_9646_c1 3300050507 Bacteria 11437
293 nmdc:mga06r32_225331_c1 3300050510 Bacteria 1863
294 nmdc:mga0n895_1033350_c1 3300050512 Unclassified 802
295 nmdc:mga0rr50_106052_c1 3300050513 Bacteria 2217
296 nmdc:mga08x19_101049_c1 3300050514 Bacteria 1914
297 Ga0495601_0123574 3300053077 Bacteria 1682
298 Ga0495595_0059663 3300053084 Bacteria 1784
299 Ga0495619_0051131 3300053085 Bacteria 2730
300 Ga0466962_0008715 3300061719 Bacteria 4862
301 Ga0466962_0028085 3300061719 Bacteria 2696
302 Ga0466968_0003132
303 Ga0070683_100183644
304 Ga0070682_100026480
305 Ga0070660_100008678
306 Ga0070660_100151059
307 Ga0070661_100354953
308 Ga0070659_100101941
309 Ga0070709_10393803
310 Ga0070714_100011073
311 Ga0070714_100179292
312 Ga0070714_100627115
313 Ga0070713_100007405
314 Ga0070713_100031566
315 Ga0070713_100036183
316 Ga0070713_100059971
317 Ga0070710_10014445
318 Ga0070711_100023137
319 Ga0070681_10041928
320 Ga0070681_10107468
321 Ga0068867_100327187
322 Ga0070707_100000689
323 Ga0070698_100119796
324 Ga0070698_100145619
325 Ga0070699_100662302
326 Ga0070679_100876979
327 Ga0070684_100271167
328 Ga0070672_100132274
329 Ga0070693_100068165
330 Ga0070704_100071689
331 Ga0068855_100125756
332 Ga0070664_100291026
333 Ga0068857_100612222
334 Ga0068856_100324644
335 Ga0068856_100343682
336 Ga0068856_100947556
337 Ga0068852_100032507
338 Ga0068863_100064568
339 Ga0081455_10032276
340 Ga0081539_10023505
341 Ga0070717_10007972
342 Ga0070717_10008814
343 Ga0070717_10089030
344 Ga0070717_10130663
345 Ga0070717_10169301
346 Ga0070717_10270652
347 Ga0075365_10014472
348 Ga0075432_10019857
349 Ga0070715_10007419
350 Ga0070716_100030438
351 Ga0070712_100056838
352 Ga0070712_100142162
353 Ga0070712_100227573
354 Ga0075431_100588801
355 Ga0075433_10017294
356 Ga0075434_100013806
357 Ga0075436_100001566
358 Ga0075435_100007518
359 Ga0075435_100036671
360 Ga0105240_10004117
361 Ga0111539_10383116
362 Ga0111539_11030764
363 Ga0114129_10024900
364 Ga0105238_10219214
365 Ga0099796_10127540
366 Ga0157369_10038876
367 Ga0157369_10067942
368 Ga0157369_10254994
369 Ga0157369_10422590
370 Ga0157369_10780649
371 Ga0157374_10004478
372 Ga0157374_10190175
373 Ga0157374_10343792
374 Ga0163162_11607344
375 Ga0157372_10033993
376 Ga0157372_10089214
377 Ga0182008_10056490
378 Ga0157377_10116167
379 Ga0157376_10046001
380 Ga0157376_10229892
381 Ga0206356_10240852
382 Ga0206353_10650170
383 Ga0207699_10038911
384 Ga0207707_10200197
385 Ga0207693_10008605
386 Ga0207693_10017675
387 Ga0207663_10020687
388 Ga0207660_10002318
389 Ga0207657_10111209
390 Ga0207649_10063093
391 Ga0207652_10270128
392 Ga0207646_10000502
393 Ga0207646_10473093
394 Ga0207694_10590074
395 Ga0207687_10093365
396 Ga0207687_10576482
397 Ga0207700_10025187
398 Ga0207700_10055570
399 Ga0207700_10134237
400 Ga0207664_10004545
401 Ga0207664_10118304
402 Ga0207664_10155534
403 Ga0207664_10185481
404 Ga0207690_10103992
405 Ga0207706_10443940
406 Ga0207665_10000653
407 Ga0207665_10170898
408 Ga0207665_10224645
409 Ga0207677_10168919
410 Ga0207677_10532604
411 Ga0207702_10073336
412 Ga0207702_10244366
413 Ga0207641_10369158
414 Ga0207683_10251071
415 Ga0207683_10290128
416 Ga0207698_10032734
417 Ga0207698_10223417
418 Ga0265319_1011960
419 Ga0265318_10003322
420 Ga0265338_10014299
421 Ga0265338_10016963
422 Ga0265338_10050999
423 Ga0265324_10056098
424 Ga0265320_10005178
425 Ga0265320_10081173
426 Ga0265325_10042446
427 Ga0265331_10115322
428 Ga0265316_10043484
429 Ga0265313_10045195
430 Ga0265314_10075707
431 Ga0265342_10084086
432 Ga0307410_10398218
433 Ga0307409_100962339
434 Ga0307416_100350413
435 Ga0307411_10329380
436 Ga0316583_10012572
437 Ga0373937_0504952
438 Ga0395899_0010500
439 Ga0395899_0073478
440 Ga0395900_0002097
441 Ga0395900_0004678
442 Ga0395900_0126748
443 Ga0395900_0308456
444 Ga0395898_0007745
445 Ga0395898_0016204
446 Ga0395898_0101210
447 Ga0395898_0135726
448 Ga0395905_0000636
449 Ga0395905_0245329
450 Ga0395901_0000760
451 Ga0395901_0003643
452 Ga0395901_0139076
453 Ga0395901_0254550
454 Ga0439466_0076047
455 Ga0450907_005840
456 Ga0439446_0026844
457 Ga0466969_0012254
458 Ga0466969_0111803
459 Ga0466966_0003238
460 Ga0466966_0022683
461 Ga0466961_0003195
462 Ga0466961_0068128
463 Ga0466963_0000940
464 Ga0466963_0006247
465 Ga0466963_0026871
466 Ga0466963_0053138
467 Ga0466963_0181869
468 Ga0466963_0193171
469 Ga0466964_0049190
470 Ga0466964_0068936
471 Ga0466971_0002603
472 Ga0466968_0011331
473 Ga0466970_0348422
474 Ga0466957_0028903
475 Ga0466960_0466560
476 Ga0466959_0101293
477 Ga0466959_0252925
478 Ga0466958_0005754
479 Ga0466958_0017007
480 Ga0466958_0288880
481 Ga0466967_0056593
482 Ga0466967_0082326
483 Ga0466967_0104564
484 Ga0466967_0112895
485 Ga0466967_0136587
486 Ga0466967_0174300
487 Ga0466967_0825884
488 Ga0495641_0027493
489 Ga0495641_0120849
490 Ga0495651_0018134
491 Ga0495653_0086834
492 Ga0495582_0021401
493 Ga0495605_0034565
494 Ga0495664_0072710
495 Ga0495664_0351530
496 Ga0495584_0023938
497 Ga0495585_0024075
498 Ga0495596_0040667
499 Ga0495607_0032679
500 Ga0495618_0099487
501 Ga0495630_0042986
502 Ga0495637_0108793
503 Ga0495644_0004185
504 Ga0495644_0101032
505 Ga0495663_0043934
506 Ga0495652_0036776
507 Ga0495654_0206057
508 Ga0495609_0041008
509 Ga0495645_0034768
510 Ga0495633_0086406
511 Ga0495633_0152347
512 Ga0495667_0025293
513 Ga0495667_0034687
514 Ga0495667_0069511
515 Ga0495656_0057354
516 Ga0495635_0018678
517 Ga0495657_0067300
518 Ga0495657_0085030
519 Ga0495599_0177686
520 Ga0495647_0023042
521 Ga0495613_0024334
522 Ga0495624_0061596
523 Ga0495589_0012532
524 Ga0495581_0015460
525 Ga0495604_0273538
526 Ga0495676_0095546
527 Ga0495680_0434245
528 Ga0495677_0032648
529 Ga0495684_0002726
530 Ga0496100_0370193
531 Ga0496101_0041453
532 Ga0496101_0110175
533 Ga0496101_0154239
534 Ga0496101_0407479
535 Ga0496102_0021759
536 Ga0496102_0281509
537 Ga0496102_0397834
538 Ga0496104_0020881
539 Ga0496104_0036539
540 Ga0496104_0191236
541 Ga0496104_0233638
542 Ga0496105_0000705
543 Ga0496105_0010091
544 Ga0496105_0019435
545 Ga0496106_0006191
546 Ga0496106_0295054
547 Ga0496107_0022059
548 Ga0496107_0026261
549 Ga0496107_0136613
550 Ga0496107_0141676
551 Ga0496107_0181969
552 Ga0496108_0005215
553 Ga0496108_0012501
554 Ga0496108_0051982
555 Ga0496108_0394173
556 Ga0496108_0578042
557 Ga0496109_0001424
558 Ga0496109_0016383
559 Ga0496109_0072663
560 Ga0496109_0102015
561 Ga0496109_0125596
562 Ga0496110_0012441
563 Ga0496110_0263669
564 Ga0496111_0010000
565 Ga0496111_0010294
566 Ga0496111_0015068
567 Ga0496111_0196843
568 Ga0496111_0421727
569 Ga0496112_0015217
570 Ga0496112_0092535
571 Ga0496112_0126179
572 Ga0496112_0361677
573 Ga0496112_0451189
574 Ga0496112_0898769
575 Ga0496113_0048760
576 Ga0496113_0059537
577 Ga0496113_0132787
578 Ga0496114_0003342
579 Ga0496114_0075200
580 Ga0496114_0120392
581 Ga0496114_0125821
582 Ga0496114_0168480
583 Ga0496115_0011180
584 Ga0496115_0142083
585 Ga0496115_0450521
586 Ga0501034_0147784
587 Ga0501038_0636622
588 Ga0501042_0557007
589 Ga0501047_0052534
590 Ga0501083_0204504
591 nmdc:mga0yw44_21600_c1
592 nmdc:mga06z11_217799_c1
593 nmdc:mga05p37_9646_c1
594 nmdc:mga06r32_225331_c1
595 nmdc:mga0n895_1033350_c1
596 nmdc:mga0rr50_106052_c1
597 nmdc:mga08x19_101049_c1
598 Ga0495601_0123574
599 Ga0495595_0059663
600 Ga0495619_0051131
601 Ga0466962_0008715
602 Ga0466962_0028085

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01509

TruB_N

TruB family pseudouridylate synthase (N terminal domain)

48

193

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
1r3e-assembly1.cif.gz_A crystal structure of trna pseudouridine synthase trub and its rna complex: rna-protein recognition through a combination of rigid docking and induced fit 0.946 9 214
2ab4-assembly1.cif.gz_A dissecting the roles of a strictly conserved tyrosine in substrate recognition and catalysis by pseudouridine 55 synthase 0.9458 9 214
1zl3-assembly1.cif.gz_A coupling of active site motions and rna binding 0.9225 9 218
1ze2-assembly1.cif.gz_A conformational change of pseudouridine 55 synthase upon its association with rna substrate 0.9223 9 213
1ze1-assembly4.cif.gz_D conformational change of pseudouridine 55 synthase upon its association with rna substrate 0.9003 9 213
ID Description Score Start End Superfamily
af_B9F4Z0_25_81_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9572 9 58 3.30.2350.10
af_P9WHP7_7_227_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9301 10 216 3.30.2350.10
af_Q8I715_322_559_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9195 6 209 3.30.2350.10
af_B3DHG0_10_264_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9103 9 212 3.30.2350.10
af_O59721_53_381_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9095 13 204 3.30.2350.10
ID Description Score Start End GO Terms
AF-A0A7W0Z060-F1-model_v4 tRNA pseudouridine(55) synthase (EC 5.4.99.25) 0.9886 18 202 GO:0003723
GO:0006400
GO:0009982
GO:0140098
GO:1990481
AF-G9XA12-F1-model_v4 tRNA pseudouridine synthase B (EC 5.4.99.25) (tRNA pseudouridine(55) synthase) (Psi55 synthase) (tRNA pseudouridylate synthase) (tRNA-uridine isomerase) 0.9715 9 215 GO:0003723
GO:0031119
GO:0160148
GO:1990481
AF-A0A523IMB3-F1-model_v4 tRNA pseudouridine synthase B (EC 5.4.99.25) (tRNA pseudouridine(55) synthase) (Psi55 synthase) (tRNA pseudouridylate synthase) (tRNA-uridine isomerase) 0.9708 9 217 GO:0003723
GO:0031119
GO:0160148
GO:1990481
AF-A0A523JJB8-F1-model_v4 tRNA pseudouridine synthase B (EC 5.4.99.25) (tRNA pseudouridine(55) synthase) (Psi55 synthase) (tRNA pseudouridylate synthase) (tRNA-uridine isomerase) 0.9702 9 217 GO:0003723
GO:0031119
GO:0160148
GO:1990481
AF-A0A7W2BZE0-F1-model_v4 deleted 0.9688 9 206

Map