F392717

General Info

Members Datasets Scaffolds Average Seq Length
295 183 590 350

Family's Representative Sequence

Representative Sequence 3300031251|Ga0265327_10057664|Ga0265327_100576641
Length 410
Sequence MYIFNQIRAVKMQVPVCKQVRQKQVVPFGIRLVPRRYPGGTGRGCITANSGHLGAMGYLCRMAETQLKNIRHITLAELEEYFRGIGDKKFRAKQVYEWVWQKHAQSFEDMTNLSKELRAKMAEQFSLPALRISVTQVSEDGTVKSRFKTFDNHAVEGVLIPTEERKTACVSSQIGCSLSCKFCATGYMERQRNLSYDEIYDEVALINAQSEKQYGKKLTNIVFMGMGEPLLNYNNVLKAIERISAEDGLGMSPRRITVSTAGVAKMIRKLGDDHVRFKLALSLHAANDKKRNEIMPINETNNIKELVDALNYFYKQTKSEITFEYILFKNFNDSQKDADELIKIYRQVPADLINIIEYNPIDKAKFQKPDEEVVTKFMQHLATHKVNARLRRSRGKDIDAACGQLANKGN

Samples

Sample ID Description Type Environment
1 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
5 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
6 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
7 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
8 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
9 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
10 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
11 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
12 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
13 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
14 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
15 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
16 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
17 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
18 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
19 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
20 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
21 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
22 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
23 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
24 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
25 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
26 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
27 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
28 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
29 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
30 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
31 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
32 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
33 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
34 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
35 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
36 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
37 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
38 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
39 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
40 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
41 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
42 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
43 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
44 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
45 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
46 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
47 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
48 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
49 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
50 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
51 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
52 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
53 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
54 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
55 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
56 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
57 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
58 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
59 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
60 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
61 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
62 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
63 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
64 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
65 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
66 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
67 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
68 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
69 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
70 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
71 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
72 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
73 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
74 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
75 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
77 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
78 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
79 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
80 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
108 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
109 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
110 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
111 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
112 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
113 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
114 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
115 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
116 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
117 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
118 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
119 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
120 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
121 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
122 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
123 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
124 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
125 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
126 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
127 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
128 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
129 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
130 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
131 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
132 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
133 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
134 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
135 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
136 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
137 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
138 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
139 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
140 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
141 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
142 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
143 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
144 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
145 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
146 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
147 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
148 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
149 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
150 3300055283 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere Metagenome Endosphere
151 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
152 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
153 2738541283 Pedobacter sp. OK701 Isolate Unclassified
154 2738541284 Pedobacter sp. YR016 Isolate Unclassified
155 2738541302 Pedobacter sp. CF074 Isolate Unclassified
156 2738543023 Pedobacter sp. OK628 Isolate Unclassified
157 2739367651 Pedobacter sp. OK291 Isolate Unclassified
158 2739367656 Pedobacter sp. CF523 Isolate Unclassified
159 2739367663 Pedobacter sp. YR510 Isolate Unclassified
160 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
161 2818991437 Pedobacter terrae 518 Isolate Unclassified
162 2818991444 Filimonas endophytica 3197 Isolate Unclassified
163 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
164 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
165 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
166 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
167 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
168 2887375801 Parapusillimonas sp. SGNA-6 Isolate Rhizosphere
169 2890737413 Parapedobacter sp. SGR-10 Isolate Rhizosphere
170 2896344016 Sphingobacterium sp. SGL-16 Isolate Rhizosphere
171 2898713307 Sphingobacterium sp. SGG-5 Isolate Rhizosphere
172 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
173 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
174 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
175 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
176 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
177 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
178 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
179 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
180 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
181 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified
182 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified
183 8055588893 Parapedobacter lycopersici KACC 18788 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 88.81
Metatranscriptomes 0
Isolates 11.19

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.12
Nodule 0
Rhizoplane 0.34
Rhizosphere 80.68
Stem 0
Stem Tuber 0
Unclassified 0.34

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0265327_10057664 3300031251 Bacteria 1997
2 SwRhRL2b_contig_139210 2162886007 Bacteria 7000
3 SwRhRL2b_contig_254312 2162886007 Bacteria 3901
4 JGI24739J22299_10052967 3300001989 Bacteria 1304
5 JGI25154J39366_1000021 3300002738 Bacteria 221559
6 JGI25154J39366_1000120 3300002738 Bacteria 63261
7 JGI25157J39369_1006483 3300002741 Bacteria 1776
8 JGI25152J39213_1001294 3300002773 Bacteria 11203
9 JGI25150J39212_1000025 3300002774 Bacteria 123597
10 JGI25151J46595_10000089 3300003187 Bacteria 123597
11 JGI25153J46596_10002558 3300003215 Bacteria 10429
12 JGI25153J46596_10029162 3300003215 Bacteria 1899
13 rootH2_10049945 3300003320 Bacteria 4042
14 rootL2_10123592 3300003322 Bacteria 1970
15 Ga0055536_1000010 3300003781 Bacteria 304614
16 Ga0055530_10008821 3300003791 Bacteria 3975
17 Ga0065714_10007030 3300005288 Bacteria 13354
18 Ga0065714_10008336 3300005288 Bacteria 2581
19 Ga0065714_10016952 3300005288 Bacteria 2212
20 Ga0065714_10064503 3300005288 Bacteria 46875
21 Ga0065714_10066704 3300005288 Bacteria 6437
22 Ga0065714_10101992 3300005288 Bacteria 1631
23 Ga0065704_10000425 3300005289 Bacteria 76756
24 Ga0065704_10070136 3300005289 Bacteria 560402
25 Ga0065704_10076272 3300005289 Bacteria 5178
26 Ga0065704_10157759 3300005289 Bacteria 1378
27 Ga0070658_10185157 3300005327 Bacteria 1753
28 Ga0070683_100084871 3300005329 Bacteria 2967
29 Ga0070690_100074304 3300005330 Bacteria 2214
30 Ga0070670_100081997 3300005331 Bacteria 2771
31 Ga0070666_10019261 3300005335 Bacteria 4402
32 Ga0070680_100016124 3300005336 Bacteria 5873
33 Ga0070682_100072851 3300005337 Bacteria 2202
34 Ga0070660_100026965 3300005339 Bacteria 4282
35 Ga0070661_100018251 3300005344 Bacteria 4986
36 Ga0070668_100456609 3300005347 Bacteria 1099
37 Ga0070675_100060722 3300005354 Bacteria 3121
38 Ga0070675_100090423 3300005354 Bacteria 2564
39 Ga0070673_100140840 3300005364 Bacteria 2034
40 Ga0070662_100115276 3300005457 Bacteria 2052
41 Ga0070681_10014125 3300005458 Bacteria 7949
42 Ga0070681_10304611 3300005458 Bacteria 1503
43 Ga0070698_100003528 3300005471 Bacteria 17214
44 Ga0070698_100034611 3300005471 Bacteria 5228
45 Ga0070679_100076650 3300005530 Bacteria 3332
46 Ga0070679_100180310 3300005530 Bacteria 2084
47 Ga0070684_100056253 3300005535 Bacteria 3432
48 Ga0070684_100075773 3300005535 Bacteria 2968
49 Ga0068853_100119843 3300005539 Bacteria 2346
50 Ga0068853_100194278 3300005539 Bacteria 1845
51 Ga0068855_100141890 3300005563 Bacteria 2737
52 Ga0068855_100170944 3300005563 Bacteria 2461
53 Ga0068855_100244753 3300005563 Bacteria 2002
54 Ga0070664_100140492 3300005564 Bacteria 2126
55 Ga0068857_100041388 3300005577 Bacteria 4086
56 Ga0068856_100009166 3300005614 Bacteria 9621
57 Ga0068856_100115648 3300005614 Bacteria 2682
58 Ga0068852_100015753 3300005616 Bacteria 5877
59 Ga0068852_100121715 3300005616 Bacteria 2390
60 Ga0068852_100152906 3300005616 Bacteria 2147
61 Ga0068864_100102754 3300005618 Bacteria 2537
62 Ga0068860_100013747 3300005843 Bacteria 7937
63 Ga0068862_100032833 3300005844 Bacteria 4384
64 Ga0081539_10000418 3300005985 Bacteria 90493
65 Ga0097621_100008784 3300006237 Bacteria 7300
66 Ga0097621_100228606 3300006237 Bacteria 1623
67 Ga0068871_100012857 3300006358 Bacteria 6197
68 Ga0068871_100017949 3300006358 Bacteria 5367
69 Ga0075428_100040387 3300006844 Bacteria 5133
70 Ga0075430_100050217 3300006846 Bacteria 3519
71 Ga0075431_100003375 3300006847 Bacteria 15483
72 Ga0075429_100002382 3300006880 Bacteria 15835
73 Ga0075429_100137576 3300006880 Bacteria 2138
74 Ga0105240_10139513 3300009093 Bacteria 2899
75 Ga0114129_10000608 3300009147 Bacteria 44314
76 Ga0114129_10088042 3300009147 Bacteria 4306
77 Ga0105243_10000003 3300009148 Bacteria 712931
78 Ga0105241_10023554 3300009174 Bacteria 4566
79 Ga0105241_10075137 3300009174 Bacteria 2633
80 Ga0105242_10001449 3300009176 Bacteria 18668
81 Ga0105237_10006609 3300009545 Bacteria 12817
82 Ga0105237_10008307 3300009545 Bacteria 11265
83 Ga0105237_10117040 3300009545 Bacteria 2659
84 Ga0105239_10009401 3300010375 Bacteria 11024
85 Ga0105239_10071145 3300010375 Bacteria 3822
86 Ga0105239_10384416 3300010375 Bacteria 1587
87 Ga0157373_10000916 3300013100 Bacteria 22855
88 Ga0157373_10003073 3300013100 Bacteria 12607
89 Ga0157373_10095343 3300013100 Bacteria 2094
90 Ga0157373_10103101 3300013100 Bacteria 2007
91 Ga0157373_10105838 3300013100 Bacteria 1978
92 Ga0157373_10145454 3300013100 Bacteria 1667
93 Ga0157371_10000496 3300013102 Bacteria 47702
94 Ga0157371_10003897 3300013102 Bacteria 13292
95 Ga0157371_10010202 3300013102 Bacteria 7336
96 Ga0157371_10059123 3300013102 Bacteria 2718
97 Ga0157371_10130875 3300013102 Bacteria 1785
98 Ga0157370_10000631 3300013104 Bacteria 43919
99 Ga0157370_10007042 3300013104 Bacteria 12274
100 Ga0157370_10011483 3300013104 Bacteria 9259
101 Ga0157370_10019734 3300013104 Bacteria 6748
102 Ga0157370_10029484 3300013104 Bacteria 5383
103 Ga0157370_10054897 3300013104 Bacteria 3797
104 Ga0157370_10083434 3300013104 Bacteria 3004
105 Ga0157370_10114068 3300013104 Bacteria 2525
106 Ga0157370_10241983 3300013104 Bacteria 1669
107 Ga0157370_10329369 3300013104 Bacteria 1408
108 Ga0157370_10387252 3300013104 Bacteria 1287
109 Ga0157370_10435814 3300013104 Bacteria 1205
110 Ga0157370_10444349 3300013104 Bacteria 1192
111 Ga0157369_10000414 3300013105 Bacteria 56570
112 Ga0157369_10057073 3300013105 Bacteria 4213
113 Ga0157369_10078964 3300013105 Bacteria 3525
114 Ga0157369_10204046 3300013105 Bacteria 2074
115 Ga0157369_10212367 3300013105 Bacteria 2028
116 Ga0157369_10277520 3300013105 Bacteria 1745
117 Ga0157378_10015926 3300013297 Bacteria 6584
118 Ga0157378_10112738 3300013297 Bacteria 2495
119 Ga0157378_10417551 3300013297 Bacteria 1325
120 Ga0163162_10000343 3300013306 Bacteria 42312
121 Ga0163162_10095079 3300013306 Bacteria 3066
122 Ga0163162_10111757 3300013306 Bacteria 2830
123 Ga0163162_10159214 3300013306 Bacteria 2379
124 Ga0157372_10048687 3300013307 Bacteria 4711
125 Ga0157372_10062360 3300013307 Bacteria 4177
126 Ga0157372_10074461 3300013307 Bacteria 3829
127 Ga0157375_10021181 3300013308 Bacteria 5955
128 Ga0157375_10162666 3300013308 Bacteria 2375
129 Ga0157375_10478551 3300013308 Bacteria 1410
130 Ga0157380_10455823 3300014326 Bacteria 1229
131 Ga0182008_10000022 3300014497 Bacteria 207052
132 Ga0182008_10000104 3300014497 Bacteria 65446
133 Ga0182008_10000312 3300014497 Bacteria 38208
134 Ga0182008_10006467 3300014497 Bacteria 6548
135 Ga0182008_10041214 3300014497 Bacteria 2303
136 Ga0182008_10086890 3300014497 Bacteria 1540
137 Ga0157376_10395566 3300014969 Bacteria 1335
138 Ga0182006_1000533 3300015261 Bacteria 28901
139 Ga0182006_1002806 3300015261 Bacteria 9292
140 Ga0182006_1031027 3300015261 Bacteria 2156
141 Ga0182007_10000009 3300015262 Bacteria 316298
142 Ga0182007_10004951 3300015262 Bacteria 5939
143 Ga0182007_10017726 3300015262 Bacteria 2594
144 Ga0182007_10023570 3300015262 Bacteria 2164
145 Ga0183373_1013 3300015682 Bacteria 112340
146 Ga0163161_10000450 3300017792 Bacteria 34062
147 Ga0163161_10002752 3300017792 Bacteria 12497
148 Ga0163161_10003213 3300017792 Bacteria 11494
149 Ga0163161_10020786 3300017792 Bacteria 4609
150 Ga0163161_10221527 3300017792 Bacteria 1465
151 Ga0207425_1000008 3300025245 Bacteria 618024
152 Ga0209646_1000050 3300025246 Bacteria 296599
153 Ga0209026_1000452 3300025250 Bacteria 32703
154 Ga0209129_1000042 3300025258 Bacteria 305537
155 Ga0209676_1000009 3300025292 Bacteria 981719
156 Ga0209025_1000020 3300025294 Bacteria 618024
157 Ga0209758_1000022 3300025297 Bacteria 618024
158 Ga0209758_1005106 3300025297 Bacteria 10388
159 Ga0209050_1000103 3300025298 Bacteria 229225
160 Ga0207426_1000549 3300025302 Bacteria 52206
161 Ga0207680_10099520 3300025903 Bacteria 1865
162 Ga0207705_10062025 3300025909 Bacteria 2700
163 Ga0207654_10026097 3300025911 Bacteria 3160
164 Ga0207707_10237365 3300025912 Bacteria 1586
165 Ga0207671_10000761 3300025914 Bacteria 40954
166 Ga0207671_10011438 3300025914 Bacteria 7226
167 Ga0207657_10027818 3300025919 Bacteria 5171
168 Ga0207657_10094057 3300025919 Bacteria 2496
169 Ga0207657_10147006 3300025919 Bacteria 1922
170 Ga0207649_10138802 3300025920 Bacteria 1660
171 Ga0207652_10017708 3300025921 Bacteria 5835
172 Ga0207652_10173295 3300025921 Bacteria 1936
173 Ga0207659_10022546 3300025926 Bacteria 4193
174 Ga0207706_10020086 3300025933 Bacteria 6002
175 Ga0207686_10001540 3300025934 Bacteria 12993
176 Ga0207709_10000008 3300025935 Bacteria 713099
177 Ga0207691_10190594 3300025940 Bacteria 1788
178 Ga0207691_10226758 3300025940 Bacteria 1619
179 Ga0207691_10427369 3300025940 Bacteria 1128
180 Ga0207661_10091335 3300025944 Bacteria 2537
181 Ga0207661_10287226 3300025944 Bacteria 1471
182 Ga0207679_10306391 3300025945 Bacteria 1371
183 Ga0207667_10007978 3300025949 Bacteria 12628
184 Ga0207667_10357776 3300025949 Bacteria 1489
185 Ga0207651_10346215 3300025960 Bacteria 1250
186 Ga0207640_10245300 3300025981 Bacteria 1387
187 Ga0207639_10040238 3300026041 Bacteria 3488
188 Ga0207639_10373278 3300026041 Bacteria 1279
189 Ga0207702_10103055 3300026078 Bacteria 2523
190 Ga0207641_10147487 3300026088 Bacteria 2128
191 Ga0207648_10115771 3300026089 Bacteria 2356
192 Ga0207676_10046380 3300026095 Bacteria 3363
193 Ga0207676_10076238 3300026095 Bacteria 2709
194 Ga0207674_10035524 3300026116 Bacteria 5201
195 Ga0207683_10042876 3300026121 Bacteria 3952
196 Ga0207698_10252595 3300026142 Bacteria 1614
197 Ga0268264_10110429 3300028381 Bacteria 2407
198 Ga0265328_10039243 3300031239 Bacteria 1747
199 Ga0265327_10000051 3300031251 Bacteria 257963
200 Ga0265314_10027845 3300031711 Bacteria 4223
201 Ga0307405_10000036 3300031731 Bacteria 91687
202 Ga0307407_10000006 3300031903 Bacteria 218714
203 Ga0307412_10000001 3300031911 Bacteria 822691
204 Ga0307416_100000058 3300032002 Bacteria 103674
205 Ga0307414_10001166 3300032004 Bacteria 13492
206 Ga0307414_10004885 3300032004 Bacteria 7324
207 Ga0307414_10006049 3300032004 Bacteria 6712
208 Ga0307414_10006752 3300032004 Bacteria 6419
209 Ga0307414_10036085 3300032004 Bacteria 3297
210 Ga0307414_10070419 3300032004 Bacteria 2518
211 Ga0307414_10264607 3300032004 Bacteria 1437
212 Ga0436365_0137071 3300039437 Bacteria 1232
213 Ga0436365_0752771 3300039437 Bacteria 2610
214 Ga0466969_0000382 3300044656 Bacteria 24366
215 Ga0466972_0000010 3300044658 Bacteria 256339
216 Ga0466972_0000143 3300044658 Bacteria 58694
217 Ga0466966_0000176 3300044684 Bacteria 42093
218 Ga0466961_0007766 3300044693 Bacteria 6828
219 Ga0466970_0000921 3300044765 Bacteria 14222
220 Ga0466957_0022224 3300044842 Bacteria 3740
221 Ga0466957_0154661 3300044842 Bacteria 1485
222 Ga0466959_0000016 3300045049 Bacteria 144600
223 Ga0466959_0011904 3300045049 Bacteria 6270
224 Ga0466958_0065590 3300045836 Bacteria 2216
225 Ga0495610_0000826 3300046512 Bacteria 28965
226 Ga0495610_0003289 3300046512 Bacteria 12722
227 Ga0495633_0081181 3300046558 Bacteria 1509
228 Ga0495633_0094766 3300046558 Bacteria 1387
229 Ga0495667_0031873 3300046559 Bacteria 3535
230 Ga0496115_0064277 3300048918 Bacteria 2962
231 Ga0496116_0021112 3300048919 Bacteria 4919
232 Ga0496117_0021045 3300048920 Bacteria 5297
233 Ga0496118_0099468 3300048921 Bacteria 1971
234 Ga0496122_0006031 3300048925 Bacteria 14135
235 Ga0496122_0014325 3300048925 Bacteria 7676
236 Ga0496123_0001642 3300048926 Bacteria 30044
237 Ga0496123_0007946 3300048926 Bacteria 9846
238 Ga0496124_0116524 3300048927 Bacteria 2141
239 Ga0496125_0074456 3300048928 Bacteria 2633
240 Ga0501033_0033253 3300049570 Bacteria 3872
241 Ga0501034_0022506 3300049571 Bacteria 6422
242 Ga0501034_0032149 3300049571 Bacteria 5331
243 Ga0501034_0060730 3300049571 Bacteria 3797
244 Ga0501034_0301433 3300049571 Bacteria 1539
245 Ga0501038_0113782 3300049574 Bacteria 2239
246 Ga0501043_0016908 3300049579 Bacteria 5718
247 Ga0501043_0240945 3300049579 Bacteria 1395
248 Ga0501047_0058653 3300049581 Bacteria 3718
249 Ga0501241_017396 3300049758 Bacteria 1313
250 Ga0501035_0022670 3300049822 Bacteria 5768
251 Ga0501035_0304952 3300049822 Bacteria 1341
252 Ga0501044_0115661 3300049823 Bacteria 2688
253 nmdc:mga05p37_394815_c1 3300050507 Bacteria 1617
254 nmdc:mga05p37_914_c1 3300050507 Bacteria 33336
255 nmdc:mga09592_31875_c1 3300050508 Bacteria 4393
256 nmdc:mga06r32_2553_c1 3300050510 Bacteria 16294
257 Ga0500583_0000037 3300053092 Bacteria 92466
258 Ga0500651_0000128 3300053093 Bacteria 46966
259 Ga0500641_0005047 3300053096 Bacteria 4682
260 Ga0500616_0019424 3300053153 Unclassified 3831
261 Ga0500622_0002148 3300053156 Bacteria 14636
262 Ga0500661_002685 3300055283 Bacteria 3363
263 2586210825 2585427687 Bacteria 5544917
264 2722731068 2721755487 Bacteria 6357185
265 2738758272 2738541283 Bacteria 7222293
266 2738763186 2738541284 Bacteria 5199923
267 2738854024 2738541302 Bacteria 5944758
268 2739302079 2738543023 Bacteria 6767879
269 2739587500 2739367651 Bacteria 6359826
270 2739618106 2739367656 Bacteria 5152243
271 2739648163 2739367663 Bacteria 5040914
272 2776616271 2775506987 Bacteria 5373360
273 2819545414 2818991437 Bacteria 5805520
274 2819590382 2818991444 Bacteria 6968812
275 2842724708 2842722452 Bacteria 6263924
276 2842911796 2842909656 Bacteria 6185908
277 2849285724 2849281842 Bacteria 6065644
278 2852629728 2852627209 Bacteria 5896285
279 2857631605 2857627736 Bacteria 5625397
280 2887377260 2887375801 Bacteria 5334027
281 2890739216 2890737413 Bacteria 4269751
282 2896346987 2896344016 Bacteria 3811746
283 2898714732 2898713307 Bacteria 4110805
284 2904447900 2904445276 Bacteria 5310396
285 2904783399 2904780799 Bacteria 5840761
286 2919181265 2919177583 Bacteria 5641607
287 2919191030 2919186247 Bacteria 6244071
288 2929158444 2929154850 Bacteria 6753285
289 2929922370 2929921140 Bacteria 8649150
290 2939669310 2939664404 Bacteria 6364494
291 2945998424 2945997725 Bacteria 6404843
292 2954020900 2954016120 Bacteria 6446024
293 3003234408 3003233435 Bacteria 4458031
294 8003156788 8003151029 Bacteria 8187759
295 8055591437 8055588893 Bacteria 3619545
296 Ga0265327_10057664
297 SwRhRL2b_contig_139210
298 SwRhRL2b_contig_254312
299 JGI24739J22299_10052967
300 JGI25154J39366_1000021
301 JGI25154J39366_1000120
302 JGI25157J39369_1006483
303 JGI25152J39213_1001294
304 JGI25150J39212_1000025
305 JGI25151J46595_10000089
306 JGI25153J46596_10002558
307 JGI25153J46596_10029162
308 rootH2_10049945
309 rootL2_10123592
310 Ga0055536_1000010
311 Ga0055530_10008821
312 Ga0065714_10007030
313 Ga0065714_10008336
314 Ga0065714_10016952
315 Ga0065714_10064503
316 Ga0065714_10066704
317 Ga0065714_10101992
318 Ga0065704_10000425
319 Ga0065704_10070136
320 Ga0065704_10076272
321 Ga0065704_10157759
322 Ga0070658_10185157
323 Ga0070683_100084871
324 Ga0070690_100074304
325 Ga0070670_100081997
326 Ga0070666_10019261
327 Ga0070680_100016124
328 Ga0070682_100072851
329 Ga0070660_100026965
330 Ga0070661_100018251
331 Ga0070668_100456609
332 Ga0070675_100060722
333 Ga0070675_100090423
334 Ga0070673_100140840
335 Ga0070662_100115276
336 Ga0070681_10014125
337 Ga0070681_10304611
338 Ga0070698_100003528
339 Ga0070698_100034611
340 Ga0070679_100076650
341 Ga0070679_100180310
342 Ga0070684_100056253
343 Ga0070684_100075773
344 Ga0068853_100119843
345 Ga0068853_100194278
346 Ga0068855_100141890
347 Ga0068855_100170944
348 Ga0068855_100244753
349 Ga0070664_100140492
350 Ga0068857_100041388
351 Ga0068856_100009166
352 Ga0068856_100115648
353 Ga0068852_100015753
354 Ga0068852_100121715
355 Ga0068852_100152906
356 Ga0068864_100102754
357 Ga0068860_100013747
358 Ga0068862_100032833
359 Ga0081539_10000418
360 Ga0097621_100008784
361 Ga0097621_100228606
362 Ga0068871_100012857
363 Ga0068871_100017949
364 Ga0075428_100040387
365 Ga0075430_100050217
366 Ga0075431_100003375
367 Ga0075429_100002382
368 Ga0075429_100137576
369 Ga0105240_10139513
370 Ga0114129_10000608
371 Ga0114129_10088042
372 Ga0105243_10000003
373 Ga0105241_10023554
374 Ga0105241_10075137
375 Ga0105242_10001449
376 Ga0105237_10006609
377 Ga0105237_10008307
378 Ga0105237_10117040
379 Ga0105239_10009401
380 Ga0105239_10071145
381 Ga0105239_10384416
382 Ga0157373_10000916
383 Ga0157373_10003073
384 Ga0157373_10095343
385 Ga0157373_10103101
386 Ga0157373_10105838
387 Ga0157373_10145454
388 Ga0157371_10000496
389 Ga0157371_10003897
390 Ga0157371_10010202
391 Ga0157371_10059123
392 Ga0157371_10130875
393 Ga0157370_10000631
394 Ga0157370_10007042
395 Ga0157370_10011483
396 Ga0157370_10019734
397 Ga0157370_10029484
398 Ga0157370_10054897
399 Ga0157370_10083434
400 Ga0157370_10114068
401 Ga0157370_10241983
402 Ga0157370_10329369
403 Ga0157370_10387252
404 Ga0157370_10435814
405 Ga0157370_10444349
406 Ga0157369_10000414
407 Ga0157369_10057073
408 Ga0157369_10078964
409 Ga0157369_10204046
410 Ga0157369_10212367
411 Ga0157369_10277520
412 Ga0157378_10015926
413 Ga0157378_10112738
414 Ga0157378_10417551
415 Ga0163162_10000343
416 Ga0163162_10095079
417 Ga0163162_10111757
418 Ga0163162_10159214
419 Ga0157372_10048687
420 Ga0157372_10062360
421 Ga0157372_10074461
422 Ga0157375_10021181
423 Ga0157375_10162666
424 Ga0157375_10478551
425 Ga0157380_10455823
426 Ga0182008_10000022
427 Ga0182008_10000104
428 Ga0182008_10000312
429 Ga0182008_10006467
430 Ga0182008_10041214
431 Ga0182008_10086890
432 Ga0157376_10395566
433 Ga0182006_1000533
434 Ga0182006_1002806
435 Ga0182006_1031027
436 Ga0182007_10000009
437 Ga0182007_10004951
438 Ga0182007_10017726
439 Ga0182007_10023570
440 Ga0183373_1013
441 Ga0163161_10000450
442 Ga0163161_10002752
443 Ga0163161_10003213
444 Ga0163161_10020786
445 Ga0163161_10221527
446 Ga0207425_1000008
447 Ga0209646_1000050
448 Ga0209026_1000452
449 Ga0209129_1000042
450 Ga0209676_1000009
451 Ga0209025_1000020
452 Ga0209758_1000022
453 Ga0209758_1005106
454 Ga0209050_1000103
455 Ga0207426_1000549
456 Ga0207680_10099520
457 Ga0207705_10062025
458 Ga0207654_10026097
459 Ga0207707_10237365
460 Ga0207671_10000761
461 Ga0207671_10011438
462 Ga0207657_10027818
463 Ga0207657_10094057
464 Ga0207657_10147006
465 Ga0207649_10138802
466 Ga0207652_10017708
467 Ga0207652_10173295
468 Ga0207659_10022546
469 Ga0207706_10020086
470 Ga0207686_10001540
471 Ga0207709_10000008
472 Ga0207691_10190594
473 Ga0207691_10226758
474 Ga0207691_10427369
475 Ga0207661_10091335
476 Ga0207661_10287226
477 Ga0207679_10306391
478 Ga0207667_10007978
479 Ga0207667_10357776
480 Ga0207651_10346215
481 Ga0207640_10245300
482 Ga0207639_10040238
483 Ga0207639_10373278
484 Ga0207702_10103055
485 Ga0207641_10147487
486 Ga0207648_10115771
487 Ga0207676_10046380
488 Ga0207676_10076238
489 Ga0207674_10035524
490 Ga0207683_10042876
491 Ga0207698_10252595
492 Ga0268264_10110429
493 Ga0265328_10039243
494 Ga0265327_10000051
495 Ga0265314_10027845
496 Ga0307405_10000036
497 Ga0307407_10000006
498 Ga0307412_10000001
499 Ga0307416_100000058
500 Ga0307414_10001166
501 Ga0307414_10004885
502 Ga0307414_10006049
503 Ga0307414_10006752
504 Ga0307414_10036085
505 Ga0307414_10070419
506 Ga0307414_10264607
507 Ga0436365_0137071
508 Ga0436365_0752771
509 Ga0466969_0000382
510 Ga0466972_0000010
511 Ga0466972_0000143
512 Ga0466966_0000176
513 Ga0466961_0007766
514 Ga0466970_0000921
515 Ga0466957_0022224
516 Ga0466957_0154661
517 Ga0466959_0000016
518 Ga0466959_0011904
519 Ga0466958_0065590
520 Ga0495610_0000826
521 Ga0495610_0003289
522 Ga0495633_0081181
523 Ga0495633_0094766
524 Ga0495667_0031873
525 Ga0496115_0064277
526 Ga0496116_0021112
527 Ga0496117_0021045
528 Ga0496118_0099468
529 Ga0496122_0006031
530 Ga0496122_0014325
531 Ga0496123_0001642
532 Ga0496123_0007946
533 Ga0496124_0116524
534 Ga0496125_0074456
535 Ga0501033_0033253
536 Ga0501034_0022506
537 Ga0501034_0032149
538 Ga0501034_0060730
539 Ga0501034_0301433
540 Ga0501038_0113782
541 Ga0501043_0016908
542 Ga0501043_0240945
543 Ga0501047_0058653
544 Ga0501241_017396
545 Ga0501035_0022670
546 Ga0501035_0304952
547 Ga0501044_0115661
548 nmdc:mga05p37_394815_c1
549 nmdc:mga05p37_914_c1
550 nmdc:mga09592_31875_c1
551 nmdc:mga06r32_2553_c1
552 Ga0500583_0000037
553 Ga0500651_0000128
554 Ga0500641_0005047
555 Ga0500616_0019424
556 Ga0500622_0002148
557 Ga0500661_002685
558 2586210825
559 2722731068
560 2738758272
561 2738763186
562 2738854024
563 2739302079
564 2739587500
565 2739618106
566 2739648163
567 2776616271
568 2819545414
569 2819590382
570 2842724708
571 2842911796
572 2849285724
573 2852629728
574 2857631605
575 2887377260
576 2890739216
577 2896346987
578 2898714732
579 2904447900
580 2904783399
581 2919181265
582 2919191030
583 2929158444
584 2929922370
585 2939669310
586 2945998424
587 2954020900
588 3003234408
589 8003156788
590 8055591437

MSA Aligner

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF21016

RlmN_N

Ribosomal RNA large subunit methyltransferase N-terminal domain

68

127

0.95

PF04055

Radical_SAM

Radical SAM superfamily

170

342

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
6fz6-assembly2.cif.gz_B crystal structure of a radical sam methyltransferase from sphaerobacter thermophilus 0.9279 7 342
6fz6-assembly2.cif.gz_B crystal structure of a radical sam methyltransferase from sphaerobacter thermophilus 0.9124 7 342
3rf9-assembly1.cif.gz_B x-ray structure of rlmn from escherichia coli 0.9022 6 336
4pl2-assembly2.cif.gz_A x-ray crystal structure of c118a rlmn from escherichia coli 0.8895 6 337
4pl1-assembly2.cif.gz_A x-ray crystal structure of c118a rlmn from escherichia coli with s-adenosylmethionine 0.8884 6 333
ID Description Score Start End Superfamily
3rfaA01 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1; 0.9748 6 66 1.10.150.530
3rfaB01 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1; 0.9746 6 66 1.10.150.530
4pl1B01 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1; 0.9731 6 66 1.10.150.530
af_Q54J76_48_109_1.10.150.530 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1; 0.9696 6 67 1.10.150.530
af_Q54J76_48_109_1.10.150.530 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1; 0.9548 6 67 1.10.150.530
ID Description Score Start End GO Terms
AF-A0A4Q3F6V4-F1-model_v4 Radical SAM protein 0.9906 26 222 GO:0003824
GO:0030488
GO:0046872
GO:0051539
GO:0070475
AF-A0A357JHD3-F1-model_v4 23S rRNA (Adenine(2503)-C(2))-methyltransferase RlmN 0.9841 3 280 GO:0008168
GO:0030488
GO:0046872
GO:0051539
GO:0070475
AF-A0A4Q3ECV9-F1-model_v4 23S rRNA (Adenine(2503)-C(2))-methyltransferase RlmN 0.9829 52 315 GO:0005737
GO:0008173
GO:0030488
GO:0046872
GO:0051539
GO:0070475
AF-A0A357JHD3-F1-model_v4 23S rRNA (Adenine(2503)-C(2))-methyltransferase RlmN 0.9771 3 280 GO:0008168
GO:0030488
GO:0046872
GO:0051539
GO:0070475
AF-A0A4Q3F6V4-F1-model_v4 Radical SAM protein 0.9758 26 222 GO:0003824
GO:0030488
GO:0046872
GO:0051539
GO:0070475

Map