F391250

General Info

Members Datasets Scaffolds Average Seq Length
292 214 584 277

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8025478263|8025482244
Length 304
Sequence ARPPYHRTVSTAQIAFLKGHGTENDFVIIPDHDGRIELSPAAVARLCDRRAGIGADGVLRVVRSAAHPEARAMAGEAEWFMDYRNSDGSIAEMCGNGVRVFARYLHHAGLVEAGDLTVATRAGLRHAHIAKDGPEGAAGDVTVGMGRAVLPEGEVTVTVDGRSRPARNVNMGNPHAVTFVDDLDDAGNLFTAPGVAPAGAYPDGANVEFVVDRGPQHVAMRVHERGSGETRSCGTGACAVMVATARRDGLDPAVTGLPATYTVDVPGGRLVISEAPDGTVEMTGPAVIVAGGTFEPSWLAAALA

Samples

Sample ID Description Type Environment
1 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
5 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
6 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
7 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
8 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
9 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
10 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
11 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
12 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
13 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
14 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
15 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
16 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
17 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
18 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
19 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
20 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
21 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
22 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
23 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
24 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
25 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
26 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
27 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
28 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
29 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
30 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
31 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
32 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
33 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
34 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
35 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
36 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
37 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
38 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
39 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
40 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
41 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
42 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
43 3300042131 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0225D_E14_070716_130 Metagenome Rhizosphere
44 3300042132 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_070716_133 Metagenome Rhizosphere
45 3300042133 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB1023D_E14_070716_134 Metagenome Rhizosphere
46 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
47 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
48 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
49 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
50 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
51 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
52 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
53 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
54 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
55 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
56 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
57 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
58 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
59 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
60 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
61 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
62 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
63 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
64 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
65 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
66 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
67 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
68 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
69 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
70 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
71 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
72 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
73 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
74 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
75 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
76 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
77 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
78 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
79 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
80 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
81 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
82 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
83 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
84 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
85 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
86 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
87 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
88 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
89 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
90 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
91 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
92 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
93 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
94 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
95 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
96 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
97 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
98 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
99 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
100 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
101 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
102 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
103 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
104 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
105 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
106 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
107 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
108 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
109 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
110 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
111 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
112 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
113 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
114 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
115 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
116 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
117 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
118 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
119 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
120 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
121 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
122 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
123 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
124 3300049539 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_B_3_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
125 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
126 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
128 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
129 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
130 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
131 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
132 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
133 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
134 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
135 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
136 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
137 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
138 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
139 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
140 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
141 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
142 3300053101 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 endosphere Metagenome Endosphere
143 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
144 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
145 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
146 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
147 8025478263 Streptomyces telluris AA8 Isolate Rhizosphere
148 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
149 2582581312 Streptomyces atratus OK008 Isolate Rhizosphere
150 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
151 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
152 2616644814 Streptomyces mirabilis OK461 Isolate Rhizosphere
153 2643221548 Streptomyces sp. Root55 Isolate Unclassified
154 2643221578 Streptomyces sp. Root63 Isolate Unclassified
155 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
156 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
157 2643221647 Streptomyces sp. Root369 Isolate Unclassified
158 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
159 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
160 2643221682 Streptomyces sp. Root1319 Isolate Unclassified
161 2643221714 Streptomyces sp. Root264 Isolate Unclassified
162 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
163 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
164 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
165 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
166 2802429296 Streptomyces sampsonii KJ40 Isolate Rhizosphere
167 2808606359 Streptomyces sp. RJA2910 Isolate Unclassified
168 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
169 2808606448 Streptomyces sp. 193411 Isolate Unclassified
170 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
171 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
172 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
173 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
174 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
175 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
176 2862382967 Streptomyces scabiei NRRL B-2795 Isolate Nodule
177 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
178 2862574272 Streptomyces sp. AcE210 Isolate Nodule
179 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
180 2867346516 Streptomyces radicis AZ1-7 Isolate Unclassified
181 2867428634 Streptomyces sp. RP5T Isolate Unclassified
182 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
183 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
184 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
185 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
186 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
187 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
188 2946072368 Streptomyces achromogenes W4I19-2 Isolate Rhizosphere
189 2947224130 Streptomyces afghaniensis W1I20 Isolate Rhizosphere
190 2954002825 Streptomyces turgidiscabies W2I16 Isolate Rhizosphere
191 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
192 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
193 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
194 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
195 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
196 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
197 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
198 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
199 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
200 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
201 2966598605 Kitasatospora papulosa SLBN-177 Isolate Rhizosphere
202 2990059506 Streptomyces sp. CAP261 Isolate Unclassified
203 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified
204 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
205 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
206 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
207 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
208 8025413630 Streptomyces sp. CAI-17 Isolate Rhizosphere
209 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
210 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
211 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
212 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
213 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere
214 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 76.37
Metatranscriptomes 0.34
Isolates 23.29

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.45
Nodule 1.03
Rhizoplane 0
Rhizosphere 75.34
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24735J21928_10023231 3300002067 Bacteria 1881
2 rootL2_10024417 3300003322 Bacteria 1902
3 rootH1_10015695 3300003323 Bacteria 6936
4 JGI25160J50197_1024664 3300003354 Bacteria 1701
5 Ga0070681_10316848 3300005458 Bacteria 1469
6 Ga0075363_100001608 3300006048 Bacteria 8703
7 Ga0105245_10725250 3300009098 Bacteria 1029
8 Ga0105243_10707271 3300009148 Bacteria 983
9 Ga0105246_10103017 3300011119 Bacteria 2082
10 Ga0157372_10056793 3300013307 Bacteria 4374
11 Ga0182008_10002745 3300014497 Bacteria 10919
12 Ga0182007_10000101 3300015262 Bacteria 60723
13 Ga0183367_1019 3300015688 Bacteria 100516
14 Ga0213875_10001872 3300021388 Bacteria 13064
15 Ga0209758_1001388 3300025297 Bacteria 28805
16 Ga0207426_1009477 3300025302 Bacteria 3850
17 Ga0207426_1014103 3300025302 Bacteria 2939
18 Ga0207426_1032826 3300025302 Bacteria 1679
19 Ga0207647_10003316 3300025904 Bacteria 12090
20 Ga0207647_10188337 3300025904 Bacteria 1196
21 Ga0207709_10055942 3300025935 Bacteria 2440
22 Ga0209371_1035284 3300027312 Bacteria 1054
23 Ga0307517_10005035 3300028786 Bacteria 20096
24 Ga0307515_10001401 3300028794 Bacteria 54557
25 Ga0307515_10074750 3300028794 Bacteria 4526
26 Ga0307515_10082122 3300028794 Bacteria 4174
27 Ga0268256_1040100 3300030500 Bacteria 1054
28 Ga0307511_10000234 3300030521 Bacteria 56601
29 Ga0307512_10005935 3300030522 Bacteria 12548
30 Ga0307513_10007155 3300031456 Bacteria 14507
31 Ga0307513_10027733 3300031456 Bacteria 6493
32 Ga0307509_10029101 3300031507 Bacteria 6134
33 Ga0307509_10108061 3300031507 Bacteria 2796
34 Ga0307509_10148572 3300031507 Bacteria 2264
35 Ga0307514_10039533 3300031649 Bacteria 3725
36 Ga0307514_10045069 3300031649 Bacteria 3453
37 Ga0307514_10053878 3300031649 Bacteria 3101
38 Ga0307516_10013390 3300031730 Bacteria 8745
39 Ga0307516_10022644 3300031730 Bacteria 6450
40 Ga0307518_10076382 3300031838 Bacteria 2421
41 Ga0307410_10085875 3300031852 Bacteria 2222
42 Ga0307409_100166274 3300031995 Bacteria 1936
43 Ga0307416_100134468 3300032002 Bacteria 2234
44 Ga0307416_100333639 3300032002 Bacteria 1525
45 Ga0307507_10006939 3300033179 Bacteria 16857
46 Ga0307507_10120675 3300033179 Bacteria 2097
47 Ga0307510_10024514 3300033180 Bacteria 6968
48 Ga0307510_10135089 3300033180 Bacteria 2127
49 Ga0395898_0080932 3300037466 Bacteria 3132
50 Ga0395898_0137640 3300037466 Bacteria 2338
51 Ga0436364_0339545 3300037853 Bacteria 21622
52 Ga0439439_0035879 3300041406 Bacteria 1275
53 Ga0451837_0683615 3300041494 Bacteria 1240
54 Ga0451853_0411448 3300041512 Bacteria 4903
55 Ga0439449_0007975 3300042007 Bacteria 4022
56 Ga0439457_001027 3300042014 Bacteria 8419
57 Ga0439457_002457 3300042014 Bacteria 5286
58 Ga0439462_0005787 3300042015 Bacteria 3061
59 Ga0450894_000412 3300042131 Bacteria 7367
60 Ga0450895_004035 3300042132 Bacteria 1148
61 Ga0450896_001551 3300042133 Bacteria 2857
62 Ga0450898_005424 3300042134 Bacteria 1926
63 Ga0450906_000074 3300042145 Bacteria 16060
64 Ga0466972_0013905 3300044658 Bacteria 4037
65 Ga0466972_0070701 3300044658 Bacteria 1665
66 Ga0466965_0010830 3300044683 Bacteria 4265
67 Ga0466965_0068568 3300044683 Bacteria 1781
68 Ga0466966_0002055 3300044684 Bacteria 13068
69 Ga0466961_0002028 3300044693 Bacteria 12605
70 Ga0466963_0000796 3300044694 Bacteria 15712
71 Ga0466964_0013238 3300044706 Bacteria 3128
72 Ga0466971_0006849 3300044719 Bacteria 4958
73 Ga0466968_0099439 3300044735 Bacteria 1297
74 Ga0466970_0005948 3300044765 Bacteria 6081
75 Ga0466970_0109454 3300044765 Bacteria 1508
76 Ga0466957_0006191 3300044842 Bacteria 6753
77 Ga0466960_0010616 3300044901 Bacteria 3828
78 Ga0466960_0041457 3300044901 Bacteria 2181
79 Ga0466959_0001727 3300045049 Bacteria 13586
80 Ga0466958_0000924 3300045836 Bacteria 13221
81 Ga0466967_0002760 3300045976 Bacteria 11110
82 Ga0466967_0255497 3300045976 Bacteria 1675
83 Ga0495627_020028 3300046453 Bacteria 2235
84 Ga0495592_0016739 3300046454 Bacteria 5565
85 Ga0495603_0007064 3300046455 Bacteria 6735
86 Ga0495603_0008349 3300046455 Bacteria 6260
87 Ga0495603_0011203 3300046455 Bacteria 5434
88 Ga0495603_0018585 3300046455 Bacteria 4205
89 Ga0495629_0000981 3300046459 Bacteria 22904
90 Ga0495629_0004193 3300046459 Bacteria 10822
91 Ga0495629_0022458 3300046459 Bacteria 4498
92 Ga0495629_0030247 3300046459 Bacteria 3840
93 Ga0495629_0033380 3300046459 Bacteria 3640
94 Ga0495629_0203541 3300046459 Bacteria 1368
95 Ga0495629_0245698 3300046459 Bacteria 1232
96 Ga0495638_0019052 3300046460 Bacteria 4544
97 Ga0495638_0147739 3300046460 Bacteria 1366
98 Ga0495651_0000913 3300046462 Bacteria 22915
99 Ga0495651_0035875 3300046462 Bacteria 3860
100 Ga0495653_0048541 3300046463 Bacteria 3276
101 Ga0495582_0031702 3300046473 Bacteria 2906
102 Ga0495605_0086596 3300046474 Bacteria 1457
103 Ga0495639_0011695 3300046475 Bacteria 3787
104 Ga0495662_0000099 3300046476 Bacteria 31451
105 Ga0495662_0008139 3300046476 Bacteria 5164
106 Ga0495662_0092747 3300046476 Bacteria 1473
107 Ga0495664_0000275 3300046477 Bacteria 24568
108 Ga0495584_0058261 3300046491 Bacteria 1943
109 Ga0495594_0000242 3300046499 Bacteria 26512
110 Ga0495594_0014854 3300046499 Bacteria 4086
111 Ga0495594_0055705 3300046499 Bacteria 2180
112 Ga0495606_0040262 3300046507 Bacteria 3142
113 Ga0495610_0019785 3300046512 Bacteria 3755
114 Ga0495616_0021107 3300046513 Bacteria 3532
115 Ga0495618_0022300 3300046514 Bacteria 3910
116 Ga0495620_0020629 3300046515 Bacteria 3216
117 Ga0495628_0131901 3300046516 Bacteria 1910
118 Ga0495630_0008421 3300046517 Bacteria 7396
119 Ga0495631_0012008 3300046518 Bacteria 4245
120 Ga0495644_0116356 3300046523 Bacteria 1016
121 Ga0495666_0035958 3300046526 Bacteria 2412
122 Ga0495652_0022305 3300046529 Bacteria 5618
123 Ga0495640_0003169 3300046533 Bacteria 13248
124 Ga0495586_0049916 3300046535 Bacteria 2263
125 Ga0495587_0000507 3300046536 Bacteria 27190
126 Ga0495609_0003725 3300046538 Bacteria 8609
127 Ga0495645_0015257 3300046543 Bacteria 5464
128 Ga0495645_0042887 3300046543 Bacteria 3299
129 Ga0495645_0245525 3300046543 Bacteria 1192
130 Ga0495622_0024716 3300046557 Bacteria 2805
131 Ga0495622_0043905 3300046557 Bacteria 2077
132 Ga0495633_0079713 3300046558 Bacteria 1524
133 Ga0495667_0061142 3300046559 Bacteria 2470
134 Ga0495668_0010665 3300046616 Bacteria 5553
135 Ga0495634_0020629 3300046642 Bacteria 4670
136 Ga0495634_0245997 3300046642 Bacteria 1095
137 Ga0495611_0048375 3300046648 Bacteria 1911
138 Ga0495611_0051394 3300046648 Bacteria 1857
139 Ga0495625_0034575 3300046660 Bacteria 3729
140 Ga0495635_0046066 3300046663 Bacteria 3008
141 Ga0495635_0111221 3300046663 Bacteria 1871
142 Ga0495661_0080057 3300046665 Bacteria 1886
143 Ga0495588_0002583 3300046674 Bacteria 7746
144 Ga0495588_0004796 3300046674 Bacteria 5982
145 Ga0495588_0032933 3300046674 Bacteria 2614
146 Ga0495588_0090330 3300046674 Bacteria 1604
147 Ga0495657_0000913 3300046675 Bacteria 26040
148 Ga0495657_0002072 3300046675 Bacteria 17022
149 Ga0495657_0029832 3300046675 Bacteria 3823
150 Ga0495646_0010526 3300046680 Bacteria 5875
151 Ga0495613_0000530 3300046689 Bacteria 31918
152 Ga0495613_0003821 3300046689 Bacteria 11282
153 Ga0495613_0141736 3300046689 Bacteria 1717
154 Ga0495613_0159445 3300046689 Bacteria 1605
155 Ga0495613_0287517 3300046689 Bacteria 1140
156 Ga0495670_0058657 3300046691 Bacteria 1932
157 Ga0495671_0024280 3300046692 Bacteria 3158
158 Ga0495671_0105107 3300046692 Bacteria 1379
159 Ga0495589_0061952 3300046794 Bacteria 1835
160 Ga0495600_0048249 3300046809 Bacteria 2778
161 Ga0495581_0077032 3300047315 Bacteria 1929
162 Ga0495604_0000345 3300047317 Bacteria 41594
163 Ga0495604_0063728 3300047317 Bacteria 2810
164 Ga0495636_0016770 3300047318 Bacteria 2928
165 Ga0495636_0024160 3300047318 Bacteria 2463
166 Ga0495636_0081804 3300047318 Bacteria 1391
167 Ga0495676_0001539 3300047321 Bacteria 19963
168 Ga0495676_0003225 3300047321 Bacteria 14737
169 Ga0495676_0014588 3300047321 Bacteria 7028
170 Ga0495680_0014245 3300047322 Bacteria 6895
171 Ga0495687_001157 3300047443 Bacteria 25550
172 Ga0495687_005951 3300047443 Bacteria 7614
173 Ga0495675_0005857 3300047444 Bacteria 7511
174 Ga0495675_0009812 3300047444 Bacteria 5970
175 Ga0495685_006336 3300047447 Bacteria 3867
176 Ga0495685_007842 3300047447 Bacteria 3532
177 Ga0495685_012479 3300047447 Bacteria 2879
178 Ga0495681_0000757 3300047470 Bacteria 24894
179 Ga0495681_0068545 3300047470 Bacteria 1614
180 Ga0495684_0237365 3300047471 Bacteria 1331
181 Ga0495686_0013103 3300047472 Bacteria 5772
182 Ga0495593_0000509 3300047673 Bacteria 21985
183 Ga0495593_0063980 3300047673 Bacteria 1920
184 Ga0495593_0168641 3300047673 Bacteria 1104
185 Ga0495602_0050789 3300048088 Bacteria 3702
186 Ga0495614_0000759 3300048089 Bacteria 13679
187 Ga0495614_0004948 3300048089 Bacteria 6010
188 Ga0495614_0140016 3300048089 Bacteria 1074
189 Ga0495682_0061062 3300049460 Bacteria 1361
190 Ga0501323_007379 3300049539 Bacteria 1254
191 Ga0501031_0008199 3300049568 Bacteria 6798
192 Ga0501032_0033605 3300049569 Bacteria 3513
193 Ga0501033_0001249 3300049570 Bacteria 22773
194 Ga0501034_0140955 3300049571 Bacteria 2390
195 Ga0501036_0003641 3300049572 Bacteria 12322
196 Ga0501036_0023340 3300049572 Bacteria 5210
197 Ga0501036_0176504 3300049572 Bacteria 1799
198 Ga0501038_0002484 3300049574 Bacteria 17149
199 Ga0501038_0066716 3300049574 Bacteria 3063
200 Ga0501039_0002348 3300049575 Bacteria 14082
201 Ga0501039_0360755 3300049575 Bacteria 1142
202 Ga0501043_0034402 3300049579 Bacteria 3985
203 Ga0501046_0000508 3300049580 Bacteria 38646
204 Ga0501046_0003442 3300049580 Bacteria 14522
205 Ga0501046_0028051 3300049580 Bacteria 4588
206 Ga0501046_0354111 3300049580 Bacteria 1065
207 Ga0501047_0010427 3300049581 Bacteria 8793
208 Ga0501047_0052668 3300049581 Bacteria 3934
209 Ga0501047_0154197 3300049581 Bacteria 2171
210 Ga0501048_0010070 3300049582 Bacteria 7070
211 Ga0501070_0064749 3300049586 Bacteria 3027
212 Ga0501070_0086615 3300049586 Bacteria 2593
213 Ga0501035_0182560 3300049822 Bacteria 1807
214 Ga0501044_0005161 3300049823 Bacteria 14556
215 Ga0501044_0079719 3300049823 Bacteria 3317
216 nmdc:mga04h51_135071_c1 3300050495 Bacteria 931
217 Ga0495619_0096313 3300053085 Bacteria 2009
218 Ga0500640_001909 3300053095 Bacteria 6642
219 Ga0500553_051653 3300053101 Bacteria 1968
220 Ga0500560_013730 3300053107 Bacteria 2139
221 Ga0500572_012756 3300053111 Bacteria 2066
222 Ga0500600_0021294 3300053149 Bacteria 3888
223 Ga0500600_0176231 3300053149 Bacteria 1034
224 Ga0466962_0007989 3300061719 Bacteria 5074
225 8025482244 8025478263 Bacteria 8209203
226 2547407279 2547132111 Bacteria 8013147
227 2585297343 2582581312 Bacteria 7308206
228 2585310041 2582581313 Bacteria 10042643
229 2585318441 2582581314 Bacteria 11452267
230 2616699314 2616644814 Bacteria 11555299
231 2643761418 2643221548 Bacteria 8053412
232 2643899057 2643221578 Bacteria 9213798
233 2644016406 2643221601 Bacteria 7493239
234 2644174701 2643221631 Bacteria 8168043
235 2644267088 2643221647 Bacteria 10741251
236 2644402816 2643221673 Bacteria 9196637
237 2644442300 2643221678 Bacteria 9540101
238 2644459180 2643221682 Bacteria 6743283
239 2644626428 2643221714 Bacteria 9015452
240 2784590771 2784132148 Bacteria 8627943
241 2785340787 2784746763 Bacteria 9783172
242 2785371984 2784746768 Bacteria 10036182
243 2786673100 2786546132 Bacteria 10419719
244 2804848313 2802429296 Bacteria 7227771
245 2808844488 2808606359 Bacteria 9866990
246 2808914060 2808606375 Bacteria 9466072
247 2809234477 2808606448 Bacteria 8656184
248 2812355541 2811994879 Bacteria 9313447
249 2812478385 2811994917 Bacteria 7761064
250 2819697734 2818991463 Bacteria 7948711
251 2819740359 2818991472 Bacteria 10089953
252 2852641600 2852635781 Bacteria 8251373
253 2862284199 2862281513 Bacteria 9621493
254 2862390529 2862382967 Bacteria 10317375
255 2862510566 2862507626 Bacteria 9425308
256 2862577032 2862574272 Bacteria 10567477
257 2863409051 2863404153 Bacteria 9672205
258 2867350749 2867346516 Bacteria 7608576
259 2867433887 2867428634 Bacteria 9590268
260 2873153688 2873151551 Bacteria 8625867
261 2875397129 2875391855 Bacteria 7600475
262 2877678589 2877676314 Bacteria 9512378
263 2912763186 2912757875 Bacteria 7940295
264 2946047430 2946045630 Bacteria 8527308
265 2946070266 2946064051 Bacteria 8957905
266 2946078139 2946072368 Bacteria 8999607
267 2947226548 2947224130 Bacteria 9938529
268 2954010669 2954002825 Bacteria 9173742
269 2954383560 2954380949 Bacteria 10050426
270 2954679414 2954673503 Bacteria 9685905
271 2954684741 2954682443 Bacteria 9862841
272 2954694352 2954691527 Bacteria 10720516
273 2954709555 2954701450 Bacteria 10834262
274 2954713861 2954711539 Bacteria 10867210
275 2954738006 2954731030 Bacteria 10243860
276 2954742728 2954740390 Bacteria 10229294
277 2954756866 2954749733 Bacteria 10366972
278 2954761691 2954759201 Bacteria 9358192
279 2966600465 2966598605 Bacteria 7676064
280 2990067399 2990059506 Bacteria 9321252
281 2990089897 2990088156 Bacteria 6657676
282 3006394580 3006393351 Bacteria 6615579
283 3006494127 3006493962 Bacteria 8825450
284 8008563211 8008558824 Bacteria 10610750
285 8023627625 8023623736 Bacteria 8593882
286 8025419711 8025413630 Bacteria 7014048
287 8025533450 8025530807 Bacteria 8495698
288 8048408719 8048406513 Bacteria 8936924
289 8053946942 8053945823 Bacteria 8962862
290 8054164029 8054160619 Bacteria 7783213
291 8056669815 8056667051 Bacteria 6953971
292 8056830088 8056829672 Bacteria 9045328
293 JGI24735J21928_10023231
294 rootL2_10024417
295 rootH1_10015695
296 JGI25160J50197_1024664
297 Ga0070681_10316848
298 Ga0075363_100001608
299 Ga0105245_10725250
300 Ga0105243_10707271
301 Ga0105246_10103017
302 Ga0157372_10056793
303 Ga0182008_10002745
304 Ga0182007_10000101
305 Ga0183367_1019
306 Ga0213875_10001872
307 Ga0209758_1001388
308 Ga0207426_1009477
309 Ga0207426_1014103
310 Ga0207426_1032826
311 Ga0207647_10003316
312 Ga0207647_10188337
313 Ga0207709_10055942
314 Ga0209371_1035284
315 Ga0307517_10005035
316 Ga0307515_10001401
317 Ga0307515_10074750
318 Ga0307515_10082122
319 Ga0268256_1040100
320 Ga0307511_10000234
321 Ga0307512_10005935
322 Ga0307513_10007155
323 Ga0307513_10027733
324 Ga0307509_10029101
325 Ga0307509_10108061
326 Ga0307509_10148572
327 Ga0307514_10039533
328 Ga0307514_10045069
329 Ga0307514_10053878
330 Ga0307516_10013390
331 Ga0307516_10022644
332 Ga0307518_10076382
333 Ga0307410_10085875
334 Ga0307409_100166274
335 Ga0307416_100134468
336 Ga0307416_100333639
337 Ga0307507_10006939
338 Ga0307507_10120675
339 Ga0307510_10024514
340 Ga0307510_10135089
341 Ga0395898_0080932
342 Ga0395898_0137640
343 Ga0436364_0339545
344 Ga0439439_0035879
345 Ga0451837_0683615
346 Ga0451853_0411448
347 Ga0439449_0007975
348 Ga0439457_001027
349 Ga0439457_002457
350 Ga0439462_0005787
351 Ga0450894_000412
352 Ga0450895_004035
353 Ga0450896_001551
354 Ga0450898_005424
355 Ga0450906_000074
356 Ga0466972_0013905
357 Ga0466972_0070701
358 Ga0466965_0010830
359 Ga0466965_0068568
360 Ga0466966_0002055
361 Ga0466961_0002028
362 Ga0466963_0000796
363 Ga0466964_0013238
364 Ga0466971_0006849
365 Ga0466968_0099439
366 Ga0466970_0005948
367 Ga0466970_0109454
368 Ga0466957_0006191
369 Ga0466960_0010616
370 Ga0466960_0041457
371 Ga0466959_0001727
372 Ga0466958_0000924
373 Ga0466967_0002760
374 Ga0466967_0255497
375 Ga0495627_020028
376 Ga0495592_0016739
377 Ga0495603_0007064
378 Ga0495603_0008349
379 Ga0495603_0011203
380 Ga0495603_0018585
381 Ga0495629_0000981
382 Ga0495629_0004193
383 Ga0495629_0022458
384 Ga0495629_0030247
385 Ga0495629_0033380
386 Ga0495629_0203541
387 Ga0495629_0245698
388 Ga0495638_0019052
389 Ga0495638_0147739
390 Ga0495651_0000913
391 Ga0495651_0035875
392 Ga0495653_0048541
393 Ga0495582_0031702
394 Ga0495605_0086596
395 Ga0495639_0011695
396 Ga0495662_0000099
397 Ga0495662_0008139
398 Ga0495662_0092747
399 Ga0495664_0000275
400 Ga0495584_0058261
401 Ga0495594_0000242
402 Ga0495594_0014854
403 Ga0495594_0055705
404 Ga0495606_0040262
405 Ga0495610_0019785
406 Ga0495616_0021107
407 Ga0495618_0022300
408 Ga0495620_0020629
409 Ga0495628_0131901
410 Ga0495630_0008421
411 Ga0495631_0012008
412 Ga0495644_0116356
413 Ga0495666_0035958
414 Ga0495652_0022305
415 Ga0495640_0003169
416 Ga0495586_0049916
417 Ga0495587_0000507
418 Ga0495609_0003725
419 Ga0495645_0015257
420 Ga0495645_0042887
421 Ga0495645_0245525
422 Ga0495622_0024716
423 Ga0495622_0043905
424 Ga0495633_0079713
425 Ga0495667_0061142
426 Ga0495668_0010665
427 Ga0495634_0020629
428 Ga0495634_0245997
429 Ga0495611_0048375
430 Ga0495611_0051394
431 Ga0495625_0034575
432 Ga0495635_0046066
433 Ga0495635_0111221
434 Ga0495661_0080057
435 Ga0495588_0002583
436 Ga0495588_0004796
437 Ga0495588_0032933
438 Ga0495588_0090330
439 Ga0495657_0000913
440 Ga0495657_0002072
441 Ga0495657_0029832
442 Ga0495646_0010526
443 Ga0495613_0000530
444 Ga0495613_0003821
445 Ga0495613_0141736
446 Ga0495613_0159445
447 Ga0495613_0287517
448 Ga0495670_0058657
449 Ga0495671_0024280
450 Ga0495671_0105107
451 Ga0495589_0061952
452 Ga0495600_0048249
453 Ga0495581_0077032
454 Ga0495604_0000345
455 Ga0495604_0063728
456 Ga0495636_0016770
457 Ga0495636_0024160
458 Ga0495636_0081804
459 Ga0495676_0001539
460 Ga0495676_0003225
461 Ga0495676_0014588
462 Ga0495680_0014245
463 Ga0495687_001157
464 Ga0495687_005951
465 Ga0495675_0005857
466 Ga0495675_0009812
467 Ga0495685_006336
468 Ga0495685_007842
469 Ga0495685_012479
470 Ga0495681_0000757
471 Ga0495681_0068545
472 Ga0495684_0237365
473 Ga0495686_0013103
474 Ga0495593_0000509
475 Ga0495593_0063980
476 Ga0495593_0168641
477 Ga0495602_0050789
478 Ga0495614_0000759
479 Ga0495614_0004948
480 Ga0495614_0140016
481 Ga0495682_0061062
482 Ga0501323_007379
483 Ga0501031_0008199
484 Ga0501032_0033605
485 Ga0501033_0001249
486 Ga0501034_0140955
487 Ga0501036_0003641
488 Ga0501036_0023340
489 Ga0501036_0176504
490 Ga0501038_0002484
491 Ga0501038_0066716
492 Ga0501039_0002348
493 Ga0501039_0360755
494 Ga0501043_0034402
495 Ga0501046_0000508
496 Ga0501046_0003442
497 Ga0501046_0028051
498 Ga0501046_0354111
499 Ga0501047_0010427
500 Ga0501047_0052668
501 Ga0501047_0154197
502 Ga0501048_0010070
503 Ga0501070_0064749
504 Ga0501070_0086615
505 Ga0501035_0182560
506 Ga0501044_0005161
507 Ga0501044_0079719
508 nmdc:mga04h51_135071_c1
509 Ga0495619_0096313
510 Ga0500640_001909
511 Ga0500553_051653
512 Ga0500560_013730
513 Ga0500572_012756
514 Ga0500600_0021294
515 Ga0500600_0176231
516 Ga0466962_0007989
517 8025482244
518 2547407279
519 2585297343
520 2585310041
521 2585318441
522 2616699314
523 2643761418
524 2643899057
525 2644016406
526 2644174701
527 2644267088
528 2644402816
529 2644442300
530 2644459180
531 2644626428
532 2784590771
533 2785340787
534 2785371984
535 2786673100
536 2804848313
537 2808844488
538 2808914060
539 2809234477
540 2812355541
541 2812478385
542 2819697734
543 2819740359
544 2852641600
545 2862284199
546 2862390529
547 2862510566
548 2862577032
549 2863409051
550 2867350749
551 2867433887
552 2873153688
553 2875397129
554 2877678589
555 2912763186
556 2946047430
557 2946070266
558 2946078139
559 2947226548
560 2954010669
561 2954383560
562 2954679414
563 2954684741
564 2954694352
565 2954709555
566 2954713861
567 2954738006
568 2954742728
569 2954756866
570 2954761691
571 2966600465
572 2990067399
573 2990089897
574 3006394580
575 3006494127
576 8008563211
577 8023627625
578 8025419711
579 8025533450
580 8048408719
581 8053946942
582 8054164029
583 8056669815
584 8056830088

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01678

DAP_epimerase

Diaminopimelate epimerase

167

289

0.97

PF01678

DAP_epimerase

Diaminopimelate epimerase

16

151

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
8cuk-assembly3.cif.gz_C x-ray structure of the wd40 domain of hops subunit vps11 from yeast 0.83 233 258
8cuk-assembly2.cif.gz_B x-ray structure of the wd40 domain of hops subunit vps11 from yeast 0.8182 233 258
5h2g-assembly1.cif.gz_B crystal structure of oxidized dapf from corynebacterium glutamicum 0.8092 1 267
2otn-assembly1.cif.gz_A crystal structure of the catalytically active form of diaminopimelate epimerase from bacillus anthracis 0.8015 1 266
3fve-assembly1.cif.gz_A crystal structure of diaminopimelate epimerase mycobacterium tuberculosis dapf 0.7887 5 275
ID Description Score Start End Superfamily
5h2yB01 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.9312 3 121 3.10.310.10
af_P9WP19_1_130_3.10.310.10 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.907 7 118 3.10.310.10
af_P0A6K1_1_112_3.10.310.10 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.904 7 120 3.10.310.10
2q9jA01 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.8908 6 120 3.10.310.10
af_I1NA10_49_204_3.10.310.10 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.8774 7 143 3.10.310.10
ID Description Score Start End GO Terms
AF-A0A7J5AN82-F1-model_v4 diaminopimelate epimerase (EC 5.1.1.7) 0.9833 7 101 GO:0005829
GO:0008837
GO:0009089
AF-J3F254-F1-model_v4 Diaminopimelate epimerase 0.9503 7 118 GO:0005829
GO:0008837
GO:0009089
AF-A0A388SPT9-F1-model_v4 Diaminopimelate epimerase (DAP epimerase) (EC 5.1.1.7) (PLP-independent amino acid racemase) 0.9402 3 274 GO:0005829
GO:0008837
GO:0009089
AF-A0A3S4ZA38-F1-model_v4 deleted 0.9381 7 121
AF-A0A1U9QPT6-F1-model_v4 Diaminopimelate epimerase (DAP epimerase) (EC 5.1.1.7) (PLP-independent amino acid racemase) 0.9378 2 276 GO:0005829
GO:0008837
GO:0009089

Map