F389188

General Info

Members Datasets Scaffolds Average Seq Length
289 185 238 417

Family's Representative Sequence

Representative Sequence 3300013102|Ga0157371_10025333|Ga0157371_100253334
Length 487
Sequence LRNNVQAVPVFAIDAHAVLEVNMNNSAKSGINAVKEKVVEAYSKKKNSFPIYLSHNLNLLLKILVFLIDMNVGRITEKLNILADAAKYDVSCASSGSNRKNKDKGLGNASNGICHSYTEDGRCVSLLKILLTNHCIFDCAYCVSRKNNDIKRAAFTVQEVVDLTINFYRRNYIEGLFLSSGIFKNADYTMERLVHVAKKLRTEHNFNGYIHLKSIPGASAELMQEAGLYADRLSVNLEMPTEAGLKLLAPDKNRQDMIDPMHFLSREIIRNTEEKKLFKNAPMFAPAGQSTQVIVGATPESDQQVLQSANYFYRNFNLKRVYYSGYVPVLADQRLPALNTAVPLVRENRLYQADWLMRFYGFHVNEIVNNQNPLLDLDIDPKLSWAIRNMQAFPIDINKADLQLILRVPGIGLLSAQKIVAARKFSGLGWEQLKKIGVAINRARYFITCKSNEFERRDLTGQNIKQFIMAQSQSKYIQNTQTQLKLF

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
3 2522125168 Dyadobacter beijingensis DSM 21582 Isolate Rhizosphere
4 2551306352 Acinetobacter sp. GG2 Isolate Rhizosphere
5 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
6 2639762793 Acinetobacter calcoaceticus GK1 Isolate Rhizosphere
7 2643221665 Acinetobacter sp. Root1280 Isolate Unclassified
8 2675903507 Acinetobacter calcoaceticus GK2 Isolate Unclassified
9 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
10 2738541283 Pedobacter sp. OK701 Isolate Unclassified
11 2739367866 Hymenobacter sp. YR204 Isolate Unclassified
12 2744054655 Acinetobacter sp. BMW17 Isolate Unclassified
13 2773857761 Acinetobacter sp. 3664 Isolate Unclassified
14 2773857770 Acinetobacter sp. 3636 Isolate Unclassified
15 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
16 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
17 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
18 2839989709 Pontibacter arcticus 2b14 Isolate Unclassified
19 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
20 2881247448 Flavobacterium beibuense RSKm HC5 Isolate Rhizosphere
21 2881359912 Flavobacterium ustbae T13 Isolate Rhizosphere
22 2881955468 Edaphocola flava HME-24 Isolate Rhizosphere
23 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
24 2890737413 Parapedobacter sp. SGR-10 Isolate Rhizosphere
25 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
26 2896344016 Sphingobacterium sp. SGL-16 Isolate Rhizosphere
27 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
28 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
29 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
30 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere
31 2914759650 Rhizosphaericola mali Isolate Rhizosphere
32 2916699645 Acinetobacter ursingii M3 Isolate Unclassified
33 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
34 2919182534 Acinetobacter calcoaceticus 2589 Isolate Rhizosphere
35 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
36 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
37 2919506607 Acinetobacter sp. 3657 Isolate Unclassified
38 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
39 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
40 2928515477 Acinetobacter bereziniae 1375 Isolate Rhizosphere
41 2929239360 Chitinophaga sp. R-73072 Hybrid assembly Isolate Unclassified
42 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
43 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
44 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
45 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
46 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
47 2965320100 Flavobacterium agri MAH-1 Isolate Rhizosphere
48 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified
49 2984568884 Acinetobacter baylyi SORGH_AS893 Isolate Aerial Root
50 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
51 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
52 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
53 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
54 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
55 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
56 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
57 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
58 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
59 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
60 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
61 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
62 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
63 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
64 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
65 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
66 3300005272 Switchgrass rhizosphere microbial communities from Buena Vista Grasslands Wildlife Area, Michigan, USA - BV2.1 v1 Metagenome Rhizosphere
67 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
68 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
69 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
70 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
71 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
72 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
73 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
74 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
75 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
76 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
77 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
78 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
79 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
80 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
81 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
82 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
83 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
84 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
85 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
86 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
87 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
88 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
89 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
90 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
91 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
92 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
93 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
94 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
95 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
96 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
97 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
98 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
99 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
100 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
101 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
102 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
103 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
104 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
105 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
106 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
107 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
108 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
109 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
110 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
111 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
112 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
113 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
114 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
115 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
116 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
117 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
118 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
119 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
120 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
121 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
122 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
123 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
124 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
125 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
126 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
127 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
128 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
129 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
130 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
131 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
132 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
133 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
134 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
135 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
136 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
137 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
138 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
139 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
140 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
141 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
142 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
143 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
144 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
145 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
146 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
147 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
148 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
149 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
150 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
151 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
152 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
153 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
154 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
155 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
156 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
157 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
158 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
159 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
160 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
161 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
162 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
163 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
164 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
165 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
166 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
167 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
168 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
169 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
170 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
171 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
172 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
173 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
174 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
175 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
176 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
177 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
178 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
179 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
180 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
181 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified
182 8033232454 Acinetobacter radioresistens SA188 Isolate Unclassified
183 8036736890 Flavobacterium dauae TCH3-2 Isolate Rhizosphere
184 8055419101 Flavobacterium tyrosinilyticum KCTC 42726 Isolate Rhizosphere
185 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 81.66
Metatranscriptomes 0
Isolates 18.34

Biome Distribution

Category Percentage (%)
Aerial Root 0.35
Bulb 0
Endosphere 9.69
Nodule 1.73
Rhizoplane 1.04
Rhizosphere 68.86
Stem 0
Stem Tuber 0
Unclassified 18.34

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2566842 2162886007 Bacteria 11626
2 JGI24740J21852_10007381 3300001979 Bacteria 4473
3 JGI24739J22299_10009267 3300001989 Bacteria 3674
4 JGI24737J22298_10000078 3300001990 Bacteria 28797
5 JGI24735J21928_10000050 3300002067 Bacteria 50872
6 JGI25162J39368_1000062 3300002737 Bacteria 135587
7 JGI25162J39368_1001454 3300002737 Bacteria 12551
8 JGI25154J39366_1000002 3300002738 Bacteria 466942
9 JGI25165J46597_1001448 3300003214 Bacteria 12542
10 JGI25153J46596_10000690 3300003215 Bacteria 20608
11 rootH1_10034166 3300003316 Bacteria 6526
12 rootH1_10041641 3300003316 Bacteria 4077
13 rootH2_10012598 3300003320 Bacteria 19373
14 rootH2_10136602 3300003320 Bacteria 2245
15 rootH2_10144992 3300003320 Bacteria 4286
16 rootL2_10013848 3300003322 Bacteria 11564
17 rootH1_10002054 3300003316 Bacteria 7111
18 rootH1_10002054 3300003323 Bacteria 118550
19 rootH1_10005851 3300003323 Bacteria 85811
20 rootH1_10014283 3300003323 Bacteria 28556
21 rootH1_10019085 3300003316 Bacteria 1620
22 rootH1_10019085 3300003323 Bacteria 7869
23 rootH1_10038548 3300003323 Bacteria 11016
24 rootH1_10236233 3300003323 Bacteria 2298
25 JGI25160J50197_1003770 3300003354 Bacteria 6670
26 Ga0055536_1023028 3300003781 Bacteria 1842
27 Ga0055531_10000076 3300003794 Bacteria 106998
28 Ga0058692_1000048 3300003856 Bacteria 110906
29 Ga0065703_1000068 3300005272 Bacteria 38505
30 Ga0065714_10003134 3300005288 Bacteria 28480
31 Ga0065714_10073591 3300005288 Bacteria 3161
32 Ga0065704_10011249 3300005289 Bacteria 1882
33 Ga0065704_10070136 3300005289 Bacteria 560402
34 Ga0065704_10070224 3300005289 Bacteria 60921
35 Ga0065704_10076868 3300005289 Bacteria 4933
36 Ga0065704_10085852 3300005289 Bacteria 3179
37 Ga0070658_10196916 3300005327 Bacteria 1699
38 Ga0070669_100005117 3300005353 Bacteria 9482
39 Ga0070663_100005416 3300005455 Bacteria 7581
40 Ga0070679_100013039 3300005530 Bacteria 7958
41 Ga0068853_100050000 3300005539 Bacteria 3595
42 Ga0068853_100195537 3300005539 Bacteria 1839
43 Ga0070665_100000003 3300005548 Bacteria 811857
44 Ga0070665_100005800 3300005548 Bacteria 12667
45 Ga0068855_100014487 3300005563 Bacteria 9496
46 Ga0068855_100328698 3300005563 Bacteria 1688
47 Ga0068856_100063033 3300005614 Bacteria 3662
48 Ga0075366_10008265 3300006195 Bacteria 5779
49 Ga0099824_1016992 3300006942 Bacteria 6445
50 Ga0079104_1000463 3300006946 Bacteria 45836
51 Ga0099826_10001172 3300006948 Bacteria 15142
52 Ga0105244_10003982 3300009036 Bacteria 10353
53 Ga0105244_10018305 3300009036 Bacteria 3932
54 Ga0105244_10021334 3300009036 Bacteria 3584
55 Ga0105244_10041278 3300009036 Bacteria 2391
56 Ga0105250_10052809 3300009092 Bacteria 1631
57 Ga0105240_10000193 3300009093 Bacteria 124087
58 Ga0105240_10004181 3300009093 Bacteria 22114
59 Ga0105240_10008369 3300009093 Bacteria 14802
60 Ga0105240_10038409 3300009093 Bacteria 6142
61 Ga0105240_10287651 3300009093 Bacteria 1886
62 Ga0105247_10000660 3300009101 Bacteria 27331
63 Ga0105243_10000745 3300009148 Bacteria 31197
64 Ga0105241_10040866 3300009174 Bacteria 3502
65 Ga0105241_10111725 3300009174 Bacteria 2188
66 Ga0105237_10000417 3300009545 Bacteria 60658
67 Ga0105237_10000825 3300009545 Bacteria 42402
68 Ga0105237_10001098 3300009545 Bacteria 36167
69 Ga0105237_10003933 3300009545 Bacteria 17402
70 Ga0105237_10081764 3300009545 Bacteria 3221
71 Ga0105238_10304712 3300009551 Bacteria 1577
72 Ga0105249_10005015 3300009553 Bacteria 11423
73 Ga0105239_10000007 3300010375 Bacteria 385297
74 Ga0105239_10000482 3300010375 Bacteria 58131
75 Ga0105239_10001016 3300010375 Bacteria 39199
76 Ga0105239_10002817 3300010375 Bacteria 21748
77 Ga0105239_10005553 3300010375 Bacteria 14759
78 Ga0157373_10000354 3300013100 Bacteria 36909
79 Ga0157371_10001139 3300013102 Bacteria 28616
80 Ga0157371_10002662 3300013102 Bacteria 16888
81 Ga0157371_10014201 3300013102 Bacteria 6019
82 Ga0157371_10025333 3300013102 Bacteria 4324
83 Ga0157371_10027185 3300013102 Bacteria 4151
84 Ga0157371_10035406 3300013102 Bacteria 3577
85 Ga0157370_10001222 3300013104 Bacteria 32155
86 Ga0157370_10001299 3300013104 Bacteria 31154
87 Ga0157370_10012828 3300013104 Bacteria 8664
88 Ga0157370_10015713 3300013104 Bacteria 7687
89 Ga0157370_10037697 3300013104 Bacteria 4684
90 Ga0157370_10072162 3300013104 Bacteria 3258
91 Ga0157370_10075433 3300013104 Bacteria 3179
92 Ga0157370_10078891 3300013104 Bacteria 3101
93 Ga0157370_10194610 3300013104 Bacteria 1882
94 Ga0157369_10000039 3300013105 Bacteria 188947
95 Ga0157369_10010355 3300013105 Bacteria 10631
96 Ga0157374_10023408 3300013296 Bacteria 5526
97 Ga0163162_10000031 3300013306 Bacteria 157666
98 Ga0163162_10007023 3300013306 Bacteria 10924
99 Ga0163162_10060792 3300013306 Bacteria 3815
100 Ga0163162_10138993 3300013306 Bacteria 2541
101 Ga0157372_10000001 3300013307 Bacteria 791349
102 Ga0157372_10000410 3300013307 Bacteria 47006
103 Ga0157372_10010085 3300013307 Bacteria 10040
104 Ga0157372_10012780 3300013307 Bacteria 8945
105 Ga0157372_10084033 3300013307 Bacteria 3607
106 Ga0157372_10161828 3300013307 Bacteria 2587
107 Ga0157372_10324854 3300013307 Bacteria 1791
108 Ga0157372_10347500 3300013307 Bacteria 1728
109 Ga0163163_10264090 3300014325 Bacteria 1772
110 Ga0182008_10000294 3300014497 Bacteria 39204
111 Ga0182006_1000349 3300015261 Bacteria 38806
112 Ga0182006_1001068 3300015261 Bacteria 17627
113 Ga0182006_1003877 3300015261 Bacteria 7501
114 Ga0182005_1001848 3300015265 Bacteria 8050
115 Ga0163161_10001437 3300017792 Bacteria 17579
116 Ga0163161_10020361 3300017792 Bacteria 4655
117 Ga0163161_10039303 3300017792 Bacteria 3396
118 Ga0207427_100025 3300025231 Bacteria 433726
119 Ga0209437_100010 3300025233 Bacteria 838447
120 Ga0209437_100177 3300025233 Bacteria 135759
121 Ga0209646_1000005 3300025246 Bacteria 717627
122 Ga0209026_1000252 3300025250 Bacteria 67873
123 Ga0209233_1000017 3300025261 Bacteria 898076
124 Ga0209233_1008900 3300025261 Bacteria 3076
125 Ga0209455_1013655 3300025272 Bacteria 1875
126 Ga0209758_1002276 3300025297 Bacteria 19893
127 Ga0207426_1000009 3300025302 Bacteria 797229
128 Ga0207426_1000150 3300025302 Bacteria 186352
129 Ga0207426_1005197 3300025302 Bacteria 6044
130 Ga0209257_1000064 3300025304 Bacteria 356803
131 Ga0207696_1003869 3300025711 Bacteria 6629
132 Ga0207696_1009027 3300025711 Bacteria 3745
133 Ga0207696_1025323 3300025711 Bacteria 1852
134 Ga0207655_1000943 3300025728 Bacteria 30161
135 Ga0207655_1001347 3300025728 Bacteria 23081
136 Ga0207655_1003155 3300025728 Bacteria 12454
137 Ga0207655_1010076 3300025728 Bacteria 5780
138 Ga0207713_1003406 3300025735 Bacteria 10870
139 Ga0207710_10000101 3300025900 Bacteria 110473
140 Ga0207695_10000013 3300025913 Bacteria 821265
141 Ga0207695_10003570 3300025913 Bacteria 21781
142 Ga0207695_10053948 3300025913 Bacteria 4201
143 Ga0207695_10088959 3300025913 Bacteria 3107
144 Ga0207695_10218479 3300025913 Bacteria 1814
145 Ga0207671_10000909 3300025914 Bacteria 37375
146 Ga0207671_10000937 3300025914 Bacteria 36380
147 Ga0207671_10005252 3300025914 Bacteria 12026
148 Ga0207671_10006190 3300025914 Bacteria 10744
149 Ga0207652_10001765 3300025921 Bacteria 18871
150 Ga0207681_10003714 3300025923 Bacteria 9487
151 Ga0207709_10000016 3300025935 Bacteria 478406
152 Ga0207639_10137048 3300026041 Bacteria 2034
153 Ga0207702_10061368 3300026078 Bacteria 3206
154 Ga0209281_1000158 3300027111 Bacteria 162280
155 Ga0209371_1000024 3300027312 Bacteria 477286
156 Ga0209489_115862 3300027361 Bacteria 4363
157 Ga0268266_10000052 3300028379 Bacteria 296230
158 Ga0307515_10002207 3300028794 Bacteria 42742
159 Ga0268256_1000026 3300030500 Bacteria 477260
160 Ga0316177_1121001 3300030731 Bacteria 9271
161 Ga0316176_1048616 3300030732 Bacteria 40116
162 Ga0307408_100007793 3300031548 Bacteria 7078
163 Ga0307412_10000018 3300031911 Bacteria 284374
164 Ga0307412_10157676 3300031911 Bacteria 1682
165 Ga0307412_10158797 3300031911 Bacteria 1677
166 Ga0307416_100000402 3300032002 Bacteria 22184
167 Ga0307414_10001761 3300032004 Bacteria 11225
168 Ga0307414_10017203 3300032004 Bacteria 4418
169 Ga0307414_10033410 3300032004 Bacteria 3400
170 Ga0307414_10109509 3300032004 Bacteria 2098
171 Ga0307414_10135168 3300032004 Bacteria 1921
172 Ga0395899_0000735 3300037312 Bacteria 32677
173 Ga0395900_0000128 3300037418 Bacteria 127446
174 Ga0436365_1102262 3300039437 Bacteria 7527
175 Ga0466972_0000021 3300044658 Bacteria 196266
176 Ga0453683_0175579 3300044673 Bacteria 1357
177 Ga0466966_0007236 3300044684 Bacteria 7357
178 Ga0453684_0008474 3300044712 Bacteria 18390
179 Ga0466968_0019437 3300044735 Bacteria 2735
180 Ga0466970_0000944 3300044765 Bacteria 14045
181 Ga0495627_005170 3300046453 Bacteria 5312
182 Ga0495651_0118468 3300046462 Bacteria 1948
183 Ga0495650_0000013 3300046471 Bacteria 611135
184 Ga0495585_0000651 3300046492 Bacteria 31896
185 Ga0495607_0019287 3300046501 Bacteria 4334
186 Ga0495606_0000002 3300046507 Bacteria 554637
187 Ga0495606_0040026 3300046507 Bacteria 3153
188 Ga0495606_0088299 3300046507 Bacteria 1912
189 Ga0495610_0004283 3300046512 Bacteria 10616
190 Ga0495616_0002516 3300046513 Bacteria 12123
191 Ga0495616_0008469 3300046513 Bacteria 6091
192 Ga0495643_0000987 3300046522 Bacteria 29153
193 Ga0495643_0011681 3300046522 Bacteria 5334
194 Ga0495648_0032670 3300046524 Bacteria 3411
195 Ga0495652_0138362 3300046529 Bacteria 1918
196 Ga0495633_0010739 3300046558 Bacteria 4981
197 Ga0495668_0000044 3300046616 Bacteria 227585
198 Ga0495668_0022465 3300046616 Bacteria 3606
199 Ga0495625_0000030 3300046660 Bacteria 241164
200 Ga0495625_0160182 3300046660 Bacteria 1508
201 Ga0495661_0000599 3300046665 Bacteria 37018
202 Ga0495661_0007531 3300046665 Bacteria 7590
203 Ga0495661_0027047 3300046665 Bacteria 3687
204 Ga0495649_0000041 3300046694 Bacteria 125049
205 Ga0495686_0000061 3300047472 Bacteria 236734
206 Ga0495686_0000693 3300047472 Bacteria 45522
207 Ga0495686_0001184 3300047472 Bacteria 30421
208 Ga0495686_0001378 3300047472 Bacteria 27070
209 Ga0496115_0004391 3300048918 Bacteria 10211
210 Ga0496115_0043142 3300048918 Bacteria 3596
211 Ga0496116_0000024 3300048919 Bacteria 471420
212 Ga0496116_0015922 3300048919 Bacteria 5913
213 Ga0496117_0005732 3300048920 Bacteria 12906
214 Ga0496118_0061723 3300048921 Bacteria 2773
215 Ga0496121_0046411 3300048924 Bacteria 3719
216 Ga0496122_0001655 3300048925 Bacteria 34602
217 Ga0496122_0105211 3300048925 Bacteria 1872
218 Ga0496123_0008277 3300048926 Bacteria 9580
219 Ga0496124_0086898 3300048927 Bacteria 2558
220 Ga0496125_0000018 3300048928 Bacteria 482390
221 Ga0496125_0000024 3300048928 Bacteria 442149
222 Ga0496125_0056033 3300048928 Bacteria 3205
223 Ga0496125_0081121 3300048928 Bacteria 2480
224 Ga0496126_0004313 3300048929 Bacteria 17077
225 Ga0496126_0035494 3300048929 Bacteria 4673
226 Ga0495682_0032488 3300049460 Bacteria 1927
227 Ga0501036_0069907 3300049572 Bacteria 2969
228 Ga0501241_000455 3300049758 Bacteria 8896
229 Ga0501035_0023622 3300049822 Bacteria 5641
230 Ga0500578_0000131 3300053086 Bacteria 89434
231 Ga0500641_0000103 3300053096 Bacteria 32996
232 Ga0500641_0018028 3300053096 Bacteria 2650
233 Ga0500618_003370 3300053125 Bacteria 5512
234 Ga0500618_023804 3300053125 Bacteria 1480
235 Ga0500559_0013622 3300053136 Bacteria 3442
236 Ga0500604_0000207 3300053151 Bacteria 16825
237 Ga0500622_0000039 3300053156 Bacteria 170859
238 Ga0500622_0046682 3300053156 Bacteria 2238

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300048919 Ga0496116_0015922 Ga0496116_0015922_70_1146 357
2 3300046513 Ga0495616_0002516 Ga0495616_0002516_4239_5333 362
3 3300044673 Ga0453683_0175579 Ga0453683_0175579_232_1335 363
4 3300014497 Ga0182008_10000294 Ga0182008_100002945 393
5 3300031548 Ga0307408_100007793 Ga0307408_1000077932 396
6 3300048924 Ga0496121_0046411 Ga0496121_0046411_221_1462 397
7 3300026078 Ga0207702_10061368 Ga0207702_100613684 398
8 3300013102 Ga0157371_10035406 Ga0157371_100354062 399
9 3300013104 Ga0157370_10194610 Ga0157370_101946102 399
10 3300048919 Ga0496116_0000024 Ga0496116_0000024_317771_319030 399
11 3300048921 Ga0496118_0061723 Ga0496118_0061723_216_1475 399
12 3300014325 Ga0163163_10264090 Ga0163163_102640902 400
13 3300013104 Ga0157370_10001222 Ga0157370_1000122219 401
14 3300030731 Ga0316177_1121001 Ga0316177_11210015 401
15 3300030732 Ga0316176_1048616 Ga0316176_104861611 401
16 3300048928 Ga0496125_0000018 Ga0496125_0000018_161363_162622 403
17 3300048929 Ga0496126_0035494 Ga0496126_0035494_284_1543 403
18 3300005614 Ga0068856_100063033 Ga0068856_1000630334 405
19 3300009036 Ga0105244_10003982 Ga0105244_100039827 405
20 3300009093 Ga0105240_10008369 Ga0105240_1000836912 405
21 3300013307 Ga0157372_10347500 Ga0157372_103475002 405
22 3300025728 Ga0207655_1003155 Ga0207655_10031556 405
23 3300025913 Ga0207695_10088959 Ga0207695_100889593 405
24 3300046660 Ga0495625_0160182 Ga0495625_0160182_187_1446 405
25 3300032004 Ga0307414_10135168 Ga0307414_101351682 406
26 3300003323 rootH1_10014283 rootH1_1001428315 410
27 iso_pu_bacteria 2881955468 2881956506 410
28 3300005327 Ga0070658_10196916 Ga0070658_101969162 411
29 3300046492 Ga0495585_0000651 Ga0495585_0000651_25514_26752 412
30 iso_pu_bacteria 2721755487 2722729639 412
31 iso_pu_bacteria 2890737413 2890740501 412
32 iso_pu_bacteria 2896317667 2896321531 412
33 iso_pu_bacteria 2896344016 2896346508 412
34 iso_pu_bacteria 2904780799 2904781242 412
35 iso_pu_bacteria 2914759650 2914760796 412
36 iso_pu_bacteria 2919177583 2919178845 412
37 iso_pu_bacteria 2929921140 2929927835 412
38 iso_pu_bacteria 8003151029 8003152736 412
39 iso_pu_bacteria 8036736890 8036737363 412
40 3300003320 rootH2_10144992 rootH2_101449923 413
41 3300003323 rootH1_10002054 rootH1_1000205445 413
42 iso_pu_bacteria 2643221665 2644361092 413
43 iso_pu_bacteria 2739367866 2740034354 413
44 iso_pu_bacteria 2744054655 2745161954 413
45 iso_pu_bacteria 2910245624 2910249461 413
46 iso_pu_bacteria 2916699645 2916702850 413
47 iso_pu_bacteria 2928515477 2928516235 413
48 iso_pu_bacteria 2929239360 2929242605 413
49 iso_pu_bacteria 2984568884 2984568998 413
50 iso_pu_bacteria 8033232454 8033233998 413
51 3300048918 Ga0496115_0004391 Ga0496115_0004391_7478_8722 414
52 3300053151 Ga0500604_0000207 Ga0500604_0000207_267_1514 414
53 3300053156 Ga0500622_0000039 Ga0500622_0000039_94255_95502 414
54 iso_pu_bacteria 2519899754 2520881191 414
55 iso_pu_bacteria 2522125168 2522550985 414
56 iso_pu_bacteria 2551306352 2552747582 414
57 iso_pu_bacteria 2639762793 2640735848 414
58 iso_pu_bacteria 2675903507 2678229110 414
59 iso_pu_bacteria 2773857761 2774390347 414
60 iso_pu_bacteria 2773857770 2774437798 414
61 iso_pu_bacteria 2816332280 2817414945 414
62 iso_pu_bacteria 2818991442 2819576232 414
63 iso_pu_bacteria 2852623160 2852623522 414
64 iso_pu_bacteria 2881247448 2881250422 414
65 iso_pu_bacteria 2881359912 2881360036 414
66 iso_pu_bacteria 2884933994 2884937577 414
67 iso_pu_bacteria 2903895155 2903896046 414
68 iso_pu_bacteria 2919182534 2919184700 414
69 iso_pu_bacteria 2919186247 2919190771 414
70 iso_pu_bacteria 2919437846 2919440990 414
71 iso_pu_bacteria 2919506607 2919507585 414
72 iso_pu_bacteria 2932082852 2932083657 414
73 iso_pu_bacteria 2939664404 2939669019 414
74 iso_pu_bacteria 2958458903 2958460205 414
75 iso_pu_bacteria 2958512119 2958516066 414
76 iso_pu_bacteria 2965320100 2965322549 414
77 iso_pu_bacteria 2977232053 2977232609 414
78 iso_pu_bacteria 8055419101 8055419239 414
79 iso_pu_bacteria 8055592153 8055592784 414
80 3300009174 Ga0105241_10040866 Ga0105241_100408664 415
81 3300048920 Ga0496117_0005732 Ga0496117_0005732_10657_11910 415
82 3300048925 Ga0496122_0105211 Ga0496122_0105211_180_1433 415
83 3300048928 Ga0496125_0056033 Ga0496125_0056033_1176_2429 415
84 3300002738 JGI25154J39366_1000002 JGI25154J39366_100000234 416
85 3300003215 JGI25153J46596_10000690 JGI25153J46596_1000069013 416
86 3300003794 Ga0055531_10000076 Ga0055531_1000007667 416
87 3300005288 Ga0065714_10073591 Ga0065714_100735913 416
88 3300005530 Ga0070679_100013039 Ga0070679_1000130396 416
89 3300005539 Ga0068853_100050000 Ga0068853_1000500001 416
90 3300013306 Ga0163162_10138993 Ga0163162_101389932 416
91 3300013307 Ga0157372_10084033 Ga0157372_100840334 416
92 3300013307 Ga0157372_10161828 Ga0157372_101618282 416
93 3300025246 Ga0209646_1000005 Ga0209646_1000005345 416
94 3300025250 Ga0209026_1000252 Ga0209026_100025210 416
95 3300025297 Ga0209758_1002276 Ga0209758_100227610 416
96 3300025302 Ga0207426_1000150 Ga0207426_100015041 416
97 3300025304 Ga0209257_1000064 Ga0209257_100006464 416
98 3300025921 Ga0207652_10001765 Ga0207652_100017653 416
99 3300031911 Ga0307412_10157676 Ga0307412_101576762 416
100 3300039437 Ga0436365_1102262 Ga0436365_1102262_5585_6838 416
101 3300044658 Ga0466972_0000021 Ga0466972_0000021_29638_30888 416
102 3300044735 Ga0466968_0019437 Ga0466968_0019437_746_1996 416
103 3300044765 Ga0466970_0000944 Ga0466970_0000944_1770_3020 416
104 3300046522 Ga0495643_0011681 Ga0495643_0011681_3432_4682 416
105 3300048929 Ga0496126_0004313 Ga0496126_0004313_15628_16884 416
106 3300049758 Ga0501241_000455 Ga0501241_000455_7135_8391 416
107 3300053156 Ga0500622_0046682 Ga0500622_0046682_216_1472 416
108 iso_pu_bacteria 2928147474 2928147522 416
109 3300001979 JGI24740J21852_10007381 JGI24740J21852_100073814 417
110 3300001989 JGI24739J22299_10009267 JGI24739J22299_100092674 417
111 3300001990 JGI24737J22298_10000078 JGI24737J22298_100000784 417
112 3300002067 JGI24735J21928_10000050 JGI24735J21928_1000005043 417
113 3300002737 JGI25162J39368_1000062 JGI25162J39368_1000062100 417
114 3300002737 JGI25162J39368_1001454 JGI25162J39368_10014542 417
115 3300003214 JGI25165J46597_1001448 JGI25165J46597_10014488 417
116 3300003316 rootH1_10034166 rootH1_100341662 417
117 3300003316 rootH1_10041641 rootH1_100416411 417
118 3300003320 rootH2_10012598 rootH2_1001259810 417
119 3300003323 rootH1_10005851 rootH1_1000585128 417
120 3300003323 rootH1_10019085 rootH1_100190855 417
121 3300003323 rootH1_10236233 rootH1_102362331 417
122 3300003354 JGI25160J50197_1003770 JGI25160J50197_10037704 417
123 3300005455 Ga0070663_100005416 Ga0070663_1000054165 417
124 3300005539 Ga0068853_100195537 Ga0068853_1001955372 417
125 3300005548 Ga0070665_100000003 Ga0070665_100000003594 417
126 3300005563 Ga0068855_100014487 Ga0068855_1000144877 417
127 3300005563 Ga0068855_100328698 Ga0068855_1003286982 417
128 3300006195 Ga0075366_10008265 Ga0075366_100082654 417
129 3300006942 Ga0099824_1016992 Ga0099824_10169925 417
130 3300006946 Ga0079104_1000463 Ga0079104_100046323 417
131 3300006948 Ga0099826_10001172 Ga0099826_100011723 417
132 3300009036 Ga0105244_10041278 Ga0105244_100412782 417
133 3300009093 Ga0105240_10000193 Ga0105240_1000019370 417
134 3300009093 Ga0105240_10004181 Ga0105240_1000418112 417
135 3300009093 Ga0105240_10038409 Ga0105240_100384092 417
136 3300009093 Ga0105240_10287651 Ga0105240_102876512 417
137 3300009174 Ga0105241_10111725 Ga0105241_101117252 417
138 3300009545 Ga0105237_10000417 Ga0105237_1000041730 417
139 3300009545 Ga0105237_10000825 Ga0105237_1000082525 417
140 3300009545 Ga0105237_10001098 Ga0105237_100010983 417
141 3300009545 Ga0105237_10081764 Ga0105237_100817642 417
142 3300009551 Ga0105238_10304712 Ga0105238_103047121 417
143 3300009553 Ga0105249_10005015 Ga0105249_100050155 417
144 3300010375 Ga0105239_10000007 Ga0105239_1000000721 417
145 3300010375 Ga0105239_10000482 Ga0105239_1000048217 417
146 3300010375 Ga0105239_10002817 Ga0105239_100028172 417
147 3300010375 Ga0105239_10005553 Ga0105239_100055536 417
148 3300013102 Ga0157371_10014201 Ga0157371_100142016 417
149 3300013102 Ga0157371_10025333 Ga0157371_100253334 417
150 3300013104 Ga0157370_10001299 Ga0157370_1000129922 417
151 3300013104 Ga0157370_10075433 Ga0157370_100754332 417
152 3300013104 Ga0157370_10078891 Ga0157370_100788911 417
153 3300013105 Ga0157369_10000039 Ga0157369_1000003925 417
154 3300013296 Ga0157374_10023408 Ga0157374_100234082 417
155 3300013306 Ga0163162_10000031 Ga0163162_100000314 417
156 3300013306 Ga0163162_10007023 Ga0163162_100070235 417
157 3300013306 Ga0163162_10060792 Ga0163162_100607923 417
158 3300013307 Ga0157372_10000001 Ga0157372_10000001337 417
159 3300013307 Ga0157372_10010085 Ga0157372_100100854 417
160 3300013307 Ga0157372_10324854 Ga0157372_103248542 417
161 3300017792 Ga0163161_10001437 Ga0163161_1000143715 417
162 3300025231 Ga0207427_100025 Ga0207427_100025177 417
163 3300025233 Ga0209437_100010 Ga0209437_100010439 417
164 3300025233 Ga0209437_100177 Ga0209437_100177100 417
165 3300025261 Ga0209233_1000017 Ga0209233_1000017452 417
166 3300025261 Ga0209233_1008900 Ga0209233_10089003 417
167 3300025272 Ga0209455_1013655 Ga0209455_10136552 417
168 3300025302 Ga0207426_1000009 Ga0207426_1000009386 417
169 3300025728 Ga0207655_1000943 Ga0207655_10009439 417
170 3300025913 Ga0207695_10000013 Ga0207695_10000013185 417
171 3300025913 Ga0207695_10003570 Ga0207695_100035707 417
172 3300025913 Ga0207695_10053948 Ga0207695_100539482 417
173 3300025913 Ga0207695_10218479 Ga0207695_102184792 417
174 3300025914 Ga0207671_10000909 Ga0207671_1000090923 417
175 3300025914 Ga0207671_10000937 Ga0207671_100009378 417
176 3300025914 Ga0207671_10006190 Ga0207671_100061907 417
177 3300026041 Ga0207639_10137048 Ga0207639_101370482 417
178 3300027111 Ga0209281_1000158 Ga0209281_1000158114 417
179 3300027361 Ga0209489_115862 Ga0209489_1158621 417
180 3300028379 Ga0268266_10000052 Ga0268266_10000052186 417
181 3300028794 Ga0307515_10002207 Ga0307515_100022074 417
182 3300032002 Ga0307416_100000402 Ga0307416_1000004023 417
183 3300032004 Ga0307414_10017203 Ga0307414_100172032 417
184 3300032004 Ga0307414_10033410 Ga0307414_100334103 417
185 3300037312 Ga0395899_0000735 Ga0395899_0000735_20114_21373 417
186 3300037418 Ga0395900_0000128 Ga0395900_0000128_74760_76016 417
187 3300044684 Ga0466966_0007236 Ga0466966_0007236_5142_6446 417
188 3300044712 Ga0453684_0008474 Ga0453684_0008474_1792_3054 417
189 3300046453 Ga0495627_005170 Ga0495627_005170_933_2192 417
190 3300046462 Ga0495651_0118468 Ga0495651_0118468_53_1309 417
191 3300046471 Ga0495650_0000013 Ga0495650_0000013_551941_553197 417
192 3300046507 Ga0495606_0000002 Ga0495606_0000002_110479_111735 417
193 3300046507 Ga0495606_0040026 Ga0495606_0040026_603_1859 417
194 3300046507 Ga0495606_0088299 Ga0495606_0088299_135_1394 417
195 3300046512 Ga0495610_0004283 Ga0495610_0004283_6321_7577 417
196 3300046513 Ga0495616_0008469 Ga0495616_0008469_2522_3778 417
197 3300046522 Ga0495643_0000987 Ga0495643_0000987_6425_7684 417
198 3300046524 Ga0495648_0032670 Ga0495648_0032670_1039_2295 417
199 3300046529 Ga0495652_0138362 Ga0495652_0138362_498_1754 417
200 3300046558 Ga0495633_0010739 Ga0495633_0010739_1582_2838 417
201 3300046616 Ga0495668_0000044 Ga0495668_0000044_166310_167566 417
202 3300046660 Ga0495625_0000030 Ga0495625_0000030_181925_183181 417
203 3300046665 Ga0495661_0000599 Ga0495661_0000599_25833_27089 417
204 3300046665 Ga0495661_0007531 Ga0495661_0007531_3341_4597 417
205 3300046665 Ga0495661_0027047 Ga0495661_0027047_617_1873 417
206 3300046694 Ga0495649_0000041 Ga0495649_0000041_58013_59269 417
207 3300047472 Ga0495686_0000061 Ga0495686_0000061_53618_54871 417
208 3300047472 Ga0495686_0000693 Ga0495686_0000693_5039_6295 417
209 3300047472 Ga0495686_0001184 Ga0495686_0001184_28422_29678 417
210 3300047472 Ga0495686_0001378 Ga0495686_0001378_6626_7882 417
211 3300049572 Ga0501036_0069907 Ga0501036_0069907_1492_2745 417
212 3300049822 Ga0501035_0023622 Ga0501035_0023622_1887_3140 417
213 3300053086 Ga0500578_0000131 Ga0500578_0000131_20630_21886 417
214 3300053096 Ga0500641_0018028 Ga0500641_0018028_338_1591 417
215 3300053125 Ga0500618_003370 Ga0500618_003370_1989_3257 417
216 3300053125 Ga0500618_023804 Ga0500618_023804_104_1360 417
217 iso_pu_bacteria 2599185184 2599478060 417
218 iso_pu_bacteria 2839989709 2839991821 417
219 iso_pu_bacteria 2928078545 2928080021 417
220 2162886007 SwRhRL2b_contig_2566842 SwRhRL2b_0623.00002830 418
221 3300003320 rootH2_10136602 rootH2_101366021 418
222 3300003322 rootL2_10013848 rootL2_100138489 418
223 3300003323 rootH1_10038548 rootH1_100385484 418
224 3300003781 Ga0055536_1023028 Ga0055536_10230282 418
225 3300003856 Ga0058692_1000048 Ga0058692_1000048103 418
226 3300005272 Ga0065703_1000068 Ga0065703_100006825 418
227 3300005288 Ga0065714_10003134 Ga0065714_100031345 418
228 3300005289 Ga0065704_10011249 Ga0065704_100112492 418
229 3300005289 Ga0065704_10070136 Ga0065704_10070136337 418
230 3300005289 Ga0065704_10070224 Ga0065704_1007022427 418
231 3300005289 Ga0065704_10076868 Ga0065704_100768683 418
232 3300005289 Ga0065704_10085852 Ga0065704_100858523 418
233 3300005353 Ga0070669_100005117 Ga0070669_1000051174 418
234 3300005548 Ga0070665_100005800 Ga0070665_10000580011 418
235 3300009036 Ga0105244_10018305 Ga0105244_100183054 418
236 3300009036 Ga0105244_10021334 Ga0105244_100213342 418
237 3300009092 Ga0105250_10052809 Ga0105250_100528092 418
238 3300009101 Ga0105247_10000660 Ga0105247_100006607 418
239 3300009148 Ga0105243_10000745 Ga0105243_1000074523 418
240 3300009545 Ga0105237_10003933 Ga0105237_100039339 418
241 3300010375 Ga0105239_10001016 Ga0105239_1000101614 418
242 3300013100 Ga0157373_10000354 Ga0157373_1000035443 418
243 3300013102 Ga0157371_10001139 Ga0157371_1000113921 418
244 3300013102 Ga0157371_10002662 Ga0157371_1000266216 418
245 3300013102 Ga0157371_10027185 Ga0157371_100271852 418
246 3300013104 Ga0157370_10012828 Ga0157370_100128287 418
247 3300013104 Ga0157370_10015713 Ga0157370_100157137 418
248 3300013104 Ga0157370_10037697 Ga0157370_100376976 418
249 3300013104 Ga0157370_10072162 Ga0157370_100721621 418
250 3300013105 Ga0157369_10010355 Ga0157369_1001035510 418
251 3300013307 Ga0157372_10000410 Ga0157372_1000041017 418
252 3300013307 Ga0157372_10012780 Ga0157372_100127804 418
253 3300015261 Ga0182006_1000349 Ga0182006_10003494 418
254 3300015261 Ga0182006_1001068 Ga0182006_10010683 418
255 3300015261 Ga0182006_1003877 Ga0182006_10038774 418
256 3300015265 Ga0182005_1001848 Ga0182005_10018483 418
257 3300017792 Ga0163161_10020361 Ga0163161_100203614 418
258 3300017792 Ga0163161_10039303 Ga0163161_100393033 418
259 3300025302 Ga0207426_1005197 Ga0207426_10051972 418
260 3300025711 Ga0207696_1003869 Ga0207696_10038697 418
261 3300025711 Ga0207696_1009027 Ga0207696_10090274 418
262 3300025711 Ga0207696_1025323 Ga0207696_10253232 418
263 3300025728 Ga0207655_1001347 Ga0207655_10013475 418
264 3300025728 Ga0207655_1010076 Ga0207655_10100765 418
265 3300025735 Ga0207713_1003406 Ga0207713_10034064 418
266 3300025900 Ga0207710_10000101 Ga0207710_10000101106 418
267 3300025914 Ga0207671_10005252 Ga0207671_100052524 418
268 3300025923 Ga0207681_10003714 Ga0207681_100037147 418
269 3300025935 Ga0207709_10000016 Ga0207709_10000016105 418
270 3300027312 Ga0209371_1000024 Ga0209371_1000024372 418
271 3300030500 Ga0268256_1000026 Ga0268256_1000026372 418
272 3300031911 Ga0307412_10000018 Ga0307412_10000018250 418
273 3300031911 Ga0307412_10158797 Ga0307412_101587972 418
274 3300032004 Ga0307414_10001761 Ga0307414_100017613 418
275 3300032004 Ga0307414_10109509 Ga0307414_101095091 418
276 3300046501 Ga0495607_0019287 Ga0495607_0019287_241_1503 418
277 3300046616 Ga0495668_0022465 Ga0495668_0022465_1457_2725 418
278 3300048918 Ga0496115_0043142 Ga0496115_0043142_850_2112 418
279 3300048925 Ga0496122_0001655 Ga0496122_0001655_15840_17096 418
280 3300048926 Ga0496123_0008277 Ga0496123_0008277_1037_2293 418
281 3300048927 Ga0496124_0086898 Ga0496124_0086898_952_2211 418
282 3300048928 Ga0496125_0000024 Ga0496125_0000024_235110_236372 418
283 3300048928 Ga0496125_0081121 Ga0496125_0081121_282_1538 418
284 3300049460 Ga0495682_0032488 Ga0495682_0032488_651_1913 418
285 3300053096 Ga0500641_0000103 Ga0500641_0000103_10877_12139 418
286 3300053136 Ga0500559_0013622 Ga0500559_0013622_1292_2557 418
287 iso_pu_bacteria 2738541283 2738759114 418
288 iso_pu_bacteria 2821136567 2821142459 418
289 iso_pu_bacteria 2904467357 2904470373 418

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04055

Radical_SAM

Radical SAM superfamily

129

312

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
7n7i-assembly3.cif.gz_C x-ray crystal structure of viperin-like enzyme from trichoderma virens 0.7678 62 254
6b4c-assembly1.cif.gz_A structure of viperin from trichoderma virens 0.7518 86 254
3t7v-assembly1.cif.gz_A crystal structure of methylornithine synthase (pylb) 0.7517 60 281
6b4c-assembly10.cif.gz_J structure of viperin from trichoderma virens 0.751 86 254
6b4c-assembly7.cif.gz_G structure of viperin from trichoderma virens 0.7476 85 254
ID Description Score Start End Superfamily
3t7vA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.7517 60 281 3.20.20.70
af_P60716_82_298_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.7469 61 269 3.20.20.70
af_P9WPQ7_39_344_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.736 69 288 3.20.20.70
af_P0CH67_115_331_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.7321 61 269 3.20.20.70
af_P0A9N4_2_246_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.7232 70 260 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A2E2EU79-F1-model_v4 Radical SAM protein 0.9892 219 408
AF-A0A855HRJ6-F1-model_v4 deleted 0.9857 219 379
AF-K1SMD7-F1-model_v4 Radical SAM domain-containing protein 0.9842 137 305
AF-A0A351EGE9-F1-model_v4 deleted 0.9823 164 344
AF-A0A5J4P9P9-F1-model_v4 Radical SAM core domain-containing protein 0.9791 122 222

Feature Viewer

pLDDT pTM Quality
76.96 0.77 High
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Predicted Structure (AlphaFold2)

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