F389101

General Info

Members Datasets Scaffolds Average Seq Length
289 209 578 328

Family's Representative Sequence

Representative Sequence 3300006173|Ga0070716_100066743|Ga0070716_1000667432
Length 380
Sequence MMGKGRNRVAHIDCHAREGGTAEPVEWRLRVFFQSAGCLRAANNPEKTRRITLLCSKPLTRRDVLKASAAALAFAPLPVSAQAVYPARPVRVVIPYPPAGGADTVGRLLFQKLGEMWGAQFVIDNRGGAGGTIAAAAVAKAERDGYTLMFDATAHSVNPSLYPNLSYDTVKDFQPIFLAALISNLLVVNKSVEARSVADVIALAKATPGGLDWASSGNGTVQHLALEMFKYRAGIKLNHIPYRGGGPALNDVIAGQVKFYFSNAAASVGHVQSGTIKCIAHTGKGRLAALPDVAAVAETLPGFEAYEWQGLFAPAGTPAPIVDKLNAGMNAVLRQPDMIERLKQLNVESRENTPAEFRAFVVAEIEKWSGVVREANIKLG

Samples

Sample ID Description Type Environment
1 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
2 3300002239 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2 Metagenome Rhizosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
5 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
6 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
10 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
11 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
12 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
13 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
14 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
15 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
16 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
17 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
18 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
19 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
20 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
21 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
22 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
23 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
24 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
25 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
26 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
27 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
28 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
29 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
30 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
31 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
32 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
33 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
34 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
35 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
36 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
37 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
38 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
39 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
40 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
41 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
42 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
43 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
44 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
45 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
46 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
47 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
48 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
49 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
50 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
51 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
52 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
53 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
54 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
55 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
56 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
57 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
58 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
59 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
60 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
61 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
62 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
63 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
64 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
65 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
66 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
67 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
68 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
69 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
70 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
71 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
72 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
73 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
74 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
75 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
76 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
77 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
78 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
79 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
80 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
81 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
82 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
83 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
84 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
110 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
113 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
114 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
115 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
116 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
117 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
118 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
119 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
120 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
121 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
122 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
123 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
124 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
125 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
126 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
127 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
128 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
129 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
130 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
131 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
132 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
133 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
134 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
135 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
136 3300041408 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 Metagenome Rhizosphere
137 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
138 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
139 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
140 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
141 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
142 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
143 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
144 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
145 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
146 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
147 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
148 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
149 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
150 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
151 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
152 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
153 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
154 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
155 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
156 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
157 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
158 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
159 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
160 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
161 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
162 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
163 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
164 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
165 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
166 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
167 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
168 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
169 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
170 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
171 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
172 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
173 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
174 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
175 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
176 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
177 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
178 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
179 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
180 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
181 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
182 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
183 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
184 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
185 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
186 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
187 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
188 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
189 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
190 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
191 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
192 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
193 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
194 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
195 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
196 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
197 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
198 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
199 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
200 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
201 2855730933 Achromobacter sp. HZ28 Isolate Nodule
202 2855767633 Achromobacter sp. HZ34 Isolate Nodule
203 2857537821 Achromobacter sp. R-71975 Isolate Unclassified
204 2857576091 Pigmentiphaga sp. R-72090 Isolate Unclassified
205 2858950400 Achromobacter sp. K91 Isolate Unclassified
206 2883577096 Roseococcus sp. SYP-B2431 Isolate Rhizosphere
207 2894772417 Roseomonas oryzicola KCTC 22478 Isolate Rhizosphere
208 2929199973 Roseomonas sp. R-73070 Hybrid assembly Isolate Unclassified
209 8055909800 Plastoroseomonas hellenica LMG 31523 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 95.85
Metatranscriptomes 0
Isolates 4.15

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 14.88
Nodule 0.69
Rhizoplane 10.03
Rhizosphere 70.93
Stem 0
Stem Tuber 0
Unclassified 0.69

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070716_100066743 3300006173 Bacteria 2099
2 JGI24034J26672_10007224 3300002239 Bacteria 1611
3 JGI25406J46586_10000562 3300003203 Bacteria 17537
4 JGI25153J46596_10008863 3300003215 Bacteria 4750
5 Ga0055540_1003894 3300003792 Bacteria 7005
6 Ga0055531_10001138 3300003794 Bacteria 20582
7 Ga0070683_100104767 3300005329 Bacteria 2666
8 Ga0070670_100056167 3300005331 Bacteria 3379
9 Ga0070670_100080893 3300005331 Bacteria 2792
10 Ga0068869_100056844 3300005334 Bacteria 2854
11 Ga0070666_10076501 3300005335 Bacteria 2283
12 Ga0070689_100023917 3300005340 Bacteria 4580
13 Ga0070668_100046407 3300005347 Bacteria 3336
14 Ga0070668_100088074 3300005347 Bacteria 2443
15 Ga0070669_100072077 3300005353 Bacteria 2557
16 Ga0070669_100092181 3300005353 Bacteria 2274
17 Ga0070675_100049017 3300005354 Bacteria 3465
18 Ga0070675_100101488 3300005354 Bacteria 2424
19 Ga0070671_100201438 3300005355 Bacteria 1688
20 Ga0070674_100019783 3300005356 Bacteria 4284
21 Ga0070674_100196696 3300005356 Bacteria 1554
22 Ga0070688_100010353 3300005365 Bacteria 5139
23 Ga0070659_100189953 3300005366 Bacteria 1688
24 Ga0070667_100029245 3300005367 Bacteria 4590
25 Ga0070709_10065916 3300005434 Bacteria 2320
26 Ga0070713_100248825 3300005436 Bacteria 1621
27 Ga0070710_10021780 3300005437 Bacteria 3346
28 Ga0070711_100058572 3300005439 Bacteria 2671
29 Ga0070711_100105801 3300005439 Bacteria 2056
30 Ga0070700_100018962 3300005441 Bacteria 3964
31 Ga0070663_100033805 3300005455 Bacteria 3535
32 Ga0070678_100193368 3300005456 Bacteria 1674
33 Ga0070662_100023421 3300005457 Bacteria 4241
34 Ga0068867_100023389 3300005459 Bacteria 4423
35 Ga0070684_100076764 3300005535 Bacteria 2949
36 Ga0070684_100278971 3300005535 Bacteria 1531
37 Ga0070672_100021128 3300005543 Bacteria 4759
38 Ga0070672_100330904 3300005543 Bacteria 1296
39 Ga0070665_100486901 3300005548 Bacteria 1244
40 Ga0070664_100116581 3300005564 Bacteria 2335
41 Ga0068857_100162966 3300005577 Bacteria 2024
42 Ga0068854_100038060 3300005578 Bacteria 3381
43 Ga0070702_100022254 3300005615 Bacteria 3347
44 Ga0068852_100097042 3300005616 Bacteria 2650
45 Ga0068859_100463136 3300005617 Bacteria 1363
46 Ga0068864_100004578 3300005618 Bacteria 11352
47 Ga0068866_10012942 3300005718 Bacteria 3646
48 Ga0068861_100030254 3300005719 Bacteria 3966
49 Ga0068851_10053280 3300005834 Bacteria 2059
50 Ga0068870_10004900 3300005840 Bacteria 5793
51 Ga0068863_100016140 3300005841 Bacteria 7164
52 Ga0068858_100029477 3300005842 Bacteria 5096
53 Ga0068862_100018457 3300005844 Bacteria 5809
54 Ga0081455_10121480 3300005937 Bacteria 2058
55 Ga0081538_10033642 3300005981 Bacteria 3407
56 Ga0081538_10067197 3300005981 Bacteria 2003
57 Ga0081540_1008029 3300005983 Bacteria 7425
58 Ga0081539_10000118 3300005985 Bacteria 184562
59 Ga0081539_10001269 3300005985 Bacteria 44534
60 Ga0081539_10003824 3300005985 Bacteria 17697
61 Ga0081539_10107675 3300005985 Bacteria 1409
62 Ga0070717_10258094 3300006028 Bacteria 1541
63 Ga0075365_10030494 3300006038 Bacteria 3454
64 Ga0075368_10018377 3300006042 Bacteria 2627
65 Ga0075368_10067390 3300006042 Bacteria 1441
66 Ga0075363_100002510 3300006048 Bacteria 7521
67 Ga0075363_100002638 3300006048 Bacteria 7394
68 Ga0075363_100097568 3300006048 Bacteria 1624
69 Ga0075364_10016103 3300006051 Bacteria 4647
70 Ga0075364_10045200 3300006051 Bacteria 2866
71 Ga0075364_10110595 3300006051 Bacteria 1833
72 Ga0070712_100037976 3300006175 Bacteria 3287
73 Ga0075362_10017333 3300006177 Bacteria 2966
74 Ga0075367_10004819 3300006178 Bacteria 6644
75 Ga0075367_10029258 3300006178 Bacteria 3150
76 Ga0075367_10176915 3300006178 Bacteria 1330
77 Ga0075366_10128437 3300006195 Bacteria 1529
78 Ga0075370_10170858 3300006353 Bacteria 1278
79 Ga0068871_100045638 3300006358 Bacteria 3527
80 Ga0075428_100001027 3300006844 Bacteria 29563
81 Ga0075428_100065854 3300006844 Bacteria 3967
82 Ga0075428_100153130 3300006844 Bacteria 2505
83 Ga0075428_100153782 3300006844 Bacteria 2499
84 Ga0075430_100003055 3300006846 Bacteria 13995
85 Ga0075430_100070816 3300006846 Bacteria 2925
86 Ga0075431_100000017 3300006847 Bacteria 84171
87 Ga0075431_100020722 3300006847 Bacteria 6718
88 Ga0075431_100049090 3300006847 Bacteria 4353
89 Ga0075431_100147522 3300006847 Bacteria 2424
90 Ga0075434_100083990 3300006871 Bacteria 3183
91 Ga0075434_100308474 3300006871 Bacteria 1603
92 Ga0075429_100174098 3300006880 Bacteria 1885
93 Ga0068865_100083990 3300006881 Bacteria 2293
94 Ga0097620_100463135 3300006931 Bacteria 1363
95 Ga0099794_10016066 3300007265 Bacteria 3313
96 Ga0105250_10040112 3300009092 Bacteria 1878
97 Ga0111539_10203339 3300009094 Bacteria 2309
98 Ga0114129_10000025 3300009147 Bacteria 116480
99 Ga0114129_10074451 3300009147 Bacteria 4730
100 Ga0114129_10793559 3300009147 Bacteria 1209
101 Ga0105243_10225318 3300009148 Bacteria 1660
102 Ga0105238_10141815 3300009551 Bacteria 2379
103 Ga0105249_10119654 3300009553 Bacteria 2501
104 Ga0105239_10438373 3300010375 Bacteria 1481
105 Ga0105246_10033750 3300011119 Bacteria 3404
106 Ga0157378_10029468 3300013297 Bacteria 4845
107 Ga0163162_10028272 3300013306 Bacteria 5547
108 Ga0157375_10131709 3300013308 Bacteria 2620
109 Ga0163161_10080999 3300017792 Bacteria 2390
110 Ga0209758_1000772 3300025297 Bacteria 45993
111 Ga0209051_1000367 3300025303 Bacteria 65677
112 Ga0209257_1000012 3300025304 Bacteria 1111138
113 Ga0207688_10001105 3300025901 Bacteria 13845
114 Ga0207643_10000387 3300025908 Bacteria 29359
115 Ga0207693_10077495 3300025915 Unclassified 2603
116 Ga0207693_10186465 3300025915 Bacteria 1633
117 Ga0207663_10038417 3300025916 Bacteria 2894
118 Ga0207662_10010233 3300025918 Bacteria 5173
119 Ga0207657_10034973 3300025919 Bacteria 4509
120 Ga0207650_10025231 3300025925 Bacteria 4234
121 Ga0207659_10019416 3300025926 Bacteria 4474
122 Ga0207659_10079199 3300025926 Bacteria 2424
123 Ga0207700_10329909 3300025928 Bacteria 1324
124 Ga0207644_10331213 3300025931 Bacteria 1233
125 Ga0207686_10129691 3300025934 Bacteria 1728
126 Ga0207709_10281900 3300025935 Bacteria 1228
127 Ga0207670_10021293 3300025936 Bacteria 3998
128 Ga0207669_10030411 3300025937 Bacteria 3000
129 Ga0207704_10051789 3300025938 Bacteria 2485
130 Ga0207665_10001717 3300025939 Bacteria 14724
131 Ga0207691_10028372 3300025940 Bacteria 5242
132 Ga0207711_10167058 3300025941 Bacteria 1995
133 Ga0207689_10002173 3300025942 Bacteria 18432
134 Ga0207712_10165119 3300025961 Bacteria 1725
135 Ga0207668_10025392 3300025972 Bacteria 3834
136 Ga0207668_10095016 3300025972 Bacteria 2199
137 Ga0207658_10069679 3300025986 Bacteria 2658
138 Ga0207658_10153327 3300025986 Bacteria 1880
139 Ga0207639_10063939 3300026041 Bacteria 2851
140 Ga0207678_10103214 3300026067 Bacteria 2434
141 Ga0207708_10001620 3300026075 Bacteria 16770
142 Ga0207708_10069925 3300026075 Bacteria 2688
143 Ga0207641_10480228 3300026088 Bacteria 1204
144 Ga0207648_10006315 3300026089 Bacteria 11787
145 Ga0207675_100038331 3300026118 Bacteria 4472
146 Ga0207683_10024882 3300026121 Bacteria 5160
147 Ga0207698_10101366 3300026142 Bacteria 2387
148 Ga0209813_10008429 3300027866 Bacteria 2604
149 Ga0209813_10060546 3300027866 Bacteria 1207
150 Ga0207428_10001198 3300027907 Bacteria 27809
151 Ga0268265_10031224 3300028380 Bacteria 3845
152 Ga0268264_10031171 3300028381 Bacteria 4371
153 Ga0265330_10007715 3300031235 Bacteria 5226
154 Ga0265340_10085886 3300031247 Bacteria 1476
155 Ga0265316_10021601 3300031344 Bacteria 5447
156 Ga0265313_10007774 3300031595 Bacteria 7247
157 Ga0265342_10008709 3300031712 Bacteria 7239
158 Ga0373944_0020559 3300035089 Bacteria 1903
159 Ga0373945_0021922 3300035116 Bacteria 2198
160 Ga0373943_0016308 3300035170 Bacteria 3386
161 Ga0373943_0046498 3300035170 Bacteria 2118
162 Ga0373946_0077998 3300035171 Bacteria 1444
163 Ga0373946_0170305 3300035171 Bacteria 1027
164 Ga0373935_0019265 3300035692 Bacteria 4162
165 Ga0373935_0103963 3300035692 Bacteria 1876
166 Ga0373947_0002493 3300035725 Bacteria 11068
167 Ga0395899_0002888 3300037312 Bacteria 13804
168 Ga0395900_0014210 3300037418 Bacteria 8127
169 Ga0395900_0118497 3300037418 Bacteria 2717
170 Ga0395898_0108367 3300037466 Bacteria 2663
171 Ga0395905_0209078 3300037471 Bacteria 1828
172 Ga0395901_0001635 3300038443 Bacteria 23170
173 Ga0436365_1440372 3300039437 Bacteria 1374
174 Ga0439436_0000097 3300041404 Bacteria 20620
175 Ga0439453_0003013 3300041408 Bacteria 2381
176 Ga0439460_0003162 3300042461 Bacteria 3977
177 Ga0453683_0013299 3300044673 Bacteria 5378
178 Ga0451576_0061064 3300045051 Bacteria 3931
179 Ga0495629_0063160 3300046459 Bacteria 2586
180 Ga0495580_0165111 3300046472 Bacteria 1532
181 Ga0495639_0010511 3300046475 Bacteria 3986
182 Ga0495607_0002534 3300046501 Bacteria 14780
183 Ga0495618_0127134 3300046514 Bacteria 1632
184 Ga0495628_0386072 3300046516 Bacteria 1025
185 Ga0495663_0076778 3300046525 Unclassified 1071
186 Ga0495598_0008033 3300046537 Bacteria 2444
187 Ga0495621_0048225 3300046539 Bacteria 1516
188 Ga0495633_0137623 3300046558 Bacteria 1129
189 Ga0495659_0066767 3300046664 Bacteria 1340
190 Ga0495661_0097190 3300046665 Bacteria 1664
191 Ga0495647_0011834 3300046681 Bacteria 2994
192 Ga0495658_0065381 3300046683 Bacteria 2098
193 Ga0495613_0161794 3300046689 Bacteria 1592
194 Ga0495671_0049501 3300046692 Bacteria 2095
195 Ga0495672_0056725 3300047320 Bacteria 2277
196 Ga0495680_0264136 3300047322 Bacteria 1217
197 Ga0495687_022101 3300047443 Bacteria 3060
198 Ga0496100_0050386 3300048903 Bacteria 2698
199 Ga0496101_0001573 3300048904 Bacteria 13684
200 Ga0496101_0111091 3300048904 Bacteria 2063
201 Ga0496102_0014548 3300048905 Bacteria 6837
202 Ga0496102_0074369 3300048905 Bacteria 3123
203 Ga0496102_0089056 3300048905 Bacteria 2854
204 Ga0496103_0029775 3300048906 Bacteria 3318
205 Ga0496104_0001393 3300048907 Bacteria 20913
206 Ga0496104_0008002 3300048907 Bacteria 9374
207 Ga0496104_0038696 3300048907 Bacteria 4463
208 Ga0496104_0102546 3300048907 Bacteria 2740
209 Ga0496106_0091696 3300048909 Bacteria 2346
210 Ga0496106_0106719 3300048909 Bacteria 2177
211 Ga0496106_0133021 3300048909 Bacteria 1951
212 Ga0496107_0004013 3300048910 Bacteria 9911
213 Ga0496108_0000626 3300048911 Bacteria 27644
214 Ga0496108_0017276 3300048911 Bacteria 5901
215 Ga0496109_0017077 3300048912 Bacteria 6350
216 Ga0496109_0070094 3300048912 Bacteria 3216
217 Ga0496110_0029883 3300048913 Bacteria 4695
218 Ga0496110_0135692 3300048913 Bacteria 2223
219 Ga0496110_0142561 3300048913 Bacteria 2166
220 Ga0496111_0009257 3300048914 Bacteria 6565
221 Ga0496111_0011245 3300048914 Bacteria 6023
222 Ga0496112_0003529 3300048915 Bacteria 12970
223 Ga0496112_0009904 3300048915 Bacteria 8618
224 Ga0496113_0017106 3300048916 Bacteria 5026
225 Ga0496115_0005841 3300048918 Bacteria 8965
226 Ga0496115_0174498 3300048918 Bacteria 1777
227 Ga0496122_0000199 3300048925 Bacteria 133898
228 Ga0496123_0000102 3300048926 Bacteria 169327
229 Ga0501072_0000405 3300049588 Bacteria 30860
230 Ga0501072_0080577 3300049588 Bacteria 2580
231 Ga0501075_0029756 3300049591 Bacteria 4040
232 Ga0501079_0356091 3300049741 Bacteria 1147
233 Ga0501083_0045039 3300049744 Bacteria 2985
234 Ga0501044_0122324 3300049823 Bacteria 2602
235 nmdc:mga03683_85301_c1 3300050489 Bacteria 1369
236 nmdc:mga03n38_16971_c1 3300050490 Bacteria 2843
237 nmdc:mga00v17_1897_c1 3300050491 Bacteria 10821
238 nmdc:mga00v17_3309_c1 3300050491 Bacteria 8307
239 nmdc:mga00v17_68019_c1 3300050491 Bacteria 2202
240 nmdc:mga0yw44_105815_c1 3300050492 Bacteria 1798
241 nmdc:mga0yw44_21655_c1 3300050492 Bacteria 3591
242 nmdc:mga0k408_18271_c1 3300050493 Bacteria 3913
243 nmdc:mga0k408_20443_c1 3300050493 Bacteria 3709
244 nmdc:mga0k408_7211_c1 3300050493 Bacteria 5941
245 nmdc:mga06z11_18118_c1 3300050494 Bacteria 3210
246 nmdc:mga06z11_25470_c1 3300050494 Bacteria 2804
247 nmdc:mga06z11_40587_c1 3300050494 Bacteria 2323
248 nmdc:mga06z11_90609_c1 3300050494 Bacteria 1659
249 nmdc:mga04h51_3739_c1 3300050495 Bacteria 3728
250 nmdc:mga04h51_72410_c1 3300050495 Bacteria 1206
251 nmdc:mga07m45_132577_c1 3300050496 Bacteria 1442
252 nmdc:mga05p37_33783_c1 3300050507 Bacteria 6265
253 nmdc:mga05p37_490345_c1 3300050507 Bacteria 1413
254 nmdc:mga05p37_5080_c1 3300050507 Bacteria 15430
255 nmdc:mga05p37_95_c1 3300050507 Bacteria 79379
256 nmdc:mga09592_1569_c1 3300050508 Bacteria 18390
257 nmdc:mga0qj67_51118_c1 3300050509 Bacteria 3267
258 nmdc:mga06r32_114_c1 3300050510 Bacteria 57934
259 nmdc:mga06r32_126684_c1 3300050510 Bacteria 2523
260 nmdc:mga06r32_52475_c1 3300050510 Bacteria 3905
261 nmdc:mga06r32_74874_c1 3300050510 Bacteria 3283
262 nmdc:mga08y16_123553_c1 3300050511 Bacteria 2693
263 nmdc:mga08y16_279590_c1 3300050511 Bacteria 1722
264 nmdc:mga08y16_303425_c1 3300050511 Bacteria 1645
265 nmdc:mga08y16_48_c1 3300050511 Bacteria 111306
266 nmdc:mga0n895_161963_c1 3300050512 Bacteria 2269
267 nmdc:mga0n895_57190_c1 3300050512 Bacteria 3844
268 nmdc:mga0sz30_30408_c1 3300050516 Bacteria 2231
269 Ga0495655_0037324 3300053083 Bacteria 1219
270 Ga0495655_0042732 3300053083 Bacteria 1165
271 Ga0500646_0018520 3300053090 Bacteria 1835
272 Ga0500618_023757 3300053125 Bacteria 1481
273 Ga0501084_0299473 3300054114 Bacteria 1358
274 Ga0501082_0102101 3300060353 Bacteria 2481
275 Ga0501082_0223952 3300060353 Bacteria 1637
276 Ga0530510_0124958 3300061734 Bacteria 1891
277 Ga0530510_0236222 3300061734 Bacteria 1360
278 2855736078 2855730933 Bacteria 7047938
279 2855773015 2855767633 Bacteria 7049357
280 2857540938 2857537821 Bacteria 5248181
281 2857579925 2857576091 Bacteria 5465855
282 2858951619 2858950400 Bacteria 6783797
283 2883577423 2883577096 Bacteria 4709178
284 2894773584 2894772417 Bacteria 5305674
285 2894775312 2894772417 Bacteria 5305674
286 2929202966 2929199973 Bacteria 7260745
287 2929204917 2929199973 Bacteria 7260745
288 8055911953 8055909800 Bacteria 7278581
289 8055914053 8055909800 Bacteria 7278581
290 Ga0070716_100066743
291 JGI24034J26672_10007224
292 JGI25406J46586_10000562
293 JGI25153J46596_10008863
294 Ga0055540_1003894
295 Ga0055531_10001138
296 Ga0070683_100104767
297 Ga0070670_100056167
298 Ga0070670_100080893
299 Ga0068869_100056844
300 Ga0070666_10076501
301 Ga0070689_100023917
302 Ga0070668_100046407
303 Ga0070668_100088074
304 Ga0070669_100072077
305 Ga0070669_100092181
306 Ga0070675_100049017
307 Ga0070675_100101488
308 Ga0070671_100201438
309 Ga0070674_100019783
310 Ga0070674_100196696
311 Ga0070688_100010353
312 Ga0070659_100189953
313 Ga0070667_100029245
314 Ga0070709_10065916
315 Ga0070713_100248825
316 Ga0070710_10021780
317 Ga0070711_100058572
318 Ga0070711_100105801
319 Ga0070700_100018962
320 Ga0070663_100033805
321 Ga0070678_100193368
322 Ga0070662_100023421
323 Ga0068867_100023389
324 Ga0070684_100076764
325 Ga0070684_100278971
326 Ga0070672_100021128
327 Ga0070672_100330904
328 Ga0070665_100486901
329 Ga0070664_100116581
330 Ga0068857_100162966
331 Ga0068854_100038060
332 Ga0070702_100022254
333 Ga0068852_100097042
334 Ga0068859_100463136
335 Ga0068864_100004578
336 Ga0068866_10012942
337 Ga0068861_100030254
338 Ga0068851_10053280
339 Ga0068870_10004900
340 Ga0068863_100016140
341 Ga0068858_100029477
342 Ga0068862_100018457
343 Ga0081455_10121480
344 Ga0081538_10033642
345 Ga0081538_10067197
346 Ga0081540_1008029
347 Ga0081539_10000118
348 Ga0081539_10001269
349 Ga0081539_10003824
350 Ga0081539_10107675
351 Ga0070717_10258094
352 Ga0075365_10030494
353 Ga0075368_10018377
354 Ga0075368_10067390
355 Ga0075363_100002510
356 Ga0075363_100002638
357 Ga0075363_100097568
358 Ga0075364_10016103
359 Ga0075364_10045200
360 Ga0075364_10110595
361 Ga0070712_100037976
362 Ga0075362_10017333
363 Ga0075367_10004819
364 Ga0075367_10029258
365 Ga0075367_10176915
366 Ga0075366_10128437
367 Ga0075370_10170858
368 Ga0068871_100045638
369 Ga0075428_100001027
370 Ga0075428_100065854
371 Ga0075428_100153130
372 Ga0075428_100153782
373 Ga0075430_100003055
374 Ga0075430_100070816
375 Ga0075431_100000017
376 Ga0075431_100020722
377 Ga0075431_100049090
378 Ga0075431_100147522
379 Ga0075434_100083990
380 Ga0075434_100308474
381 Ga0075429_100174098
382 Ga0068865_100083990
383 Ga0097620_100463135
384 Ga0099794_10016066
385 Ga0105250_10040112
386 Ga0111539_10203339
387 Ga0114129_10000025
388 Ga0114129_10074451
389 Ga0114129_10793559
390 Ga0105243_10225318
391 Ga0105238_10141815
392 Ga0105249_10119654
393 Ga0105239_10438373
394 Ga0105246_10033750
395 Ga0157378_10029468
396 Ga0163162_10028272
397 Ga0157375_10131709
398 Ga0163161_10080999
399 Ga0209758_1000772
400 Ga0209051_1000367
401 Ga0209257_1000012
402 Ga0207688_10001105
403 Ga0207643_10000387
404 Ga0207693_10077495
405 Ga0207693_10186465
406 Ga0207663_10038417
407 Ga0207662_10010233
408 Ga0207657_10034973
409 Ga0207650_10025231
410 Ga0207659_10019416
411 Ga0207659_10079199
412 Ga0207700_10329909
413 Ga0207644_10331213
414 Ga0207686_10129691
415 Ga0207709_10281900
416 Ga0207670_10021293
417 Ga0207669_10030411
418 Ga0207704_10051789
419 Ga0207665_10001717
420 Ga0207691_10028372
421 Ga0207711_10167058
422 Ga0207689_10002173
423 Ga0207712_10165119
424 Ga0207668_10025392
425 Ga0207668_10095016
426 Ga0207658_10069679
427 Ga0207658_10153327
428 Ga0207639_10063939
429 Ga0207678_10103214
430 Ga0207708_10001620
431 Ga0207708_10069925
432 Ga0207641_10480228
433 Ga0207648_10006315
434 Ga0207675_100038331
435 Ga0207683_10024882
436 Ga0207698_10101366
437 Ga0209813_10008429
438 Ga0209813_10060546
439 Ga0207428_10001198
440 Ga0268265_10031224
441 Ga0268264_10031171
442 Ga0265330_10007715
443 Ga0265340_10085886
444 Ga0265316_10021601
445 Ga0265313_10007774
446 Ga0265342_10008709
447 Ga0373944_0020559
448 Ga0373945_0021922
449 Ga0373943_0016308
450 Ga0373943_0046498
451 Ga0373946_0077998
452 Ga0373946_0170305
453 Ga0373935_0019265
454 Ga0373935_0103963
455 Ga0373947_0002493
456 Ga0395899_0002888
457 Ga0395900_0014210
458 Ga0395900_0118497
459 Ga0395898_0108367
460 Ga0395905_0209078
461 Ga0395901_0001635
462 Ga0436365_1440372
463 Ga0439436_0000097
464 Ga0439453_0003013
465 Ga0439460_0003162
466 Ga0453683_0013299
467 Ga0451576_0061064
468 Ga0495629_0063160
469 Ga0495580_0165111
470 Ga0495639_0010511
471 Ga0495607_0002534
472 Ga0495618_0127134
473 Ga0495628_0386072
474 Ga0495663_0076778
475 Ga0495598_0008033
476 Ga0495621_0048225
477 Ga0495633_0137623
478 Ga0495659_0066767
479 Ga0495661_0097190
480 Ga0495647_0011834
481 Ga0495658_0065381
482 Ga0495613_0161794
483 Ga0495671_0049501
484 Ga0495672_0056725
485 Ga0495680_0264136
486 Ga0495687_022101
487 Ga0496100_0050386
488 Ga0496101_0001573
489 Ga0496101_0111091
490 Ga0496102_0014548
491 Ga0496102_0074369
492 Ga0496102_0089056
493 Ga0496103_0029775
494 Ga0496104_0001393
495 Ga0496104_0008002
496 Ga0496104_0038696
497 Ga0496104_0102546
498 Ga0496106_0091696
499 Ga0496106_0106719
500 Ga0496106_0133021
501 Ga0496107_0004013
502 Ga0496108_0000626
503 Ga0496108_0017276
504 Ga0496109_0017077
505 Ga0496109_0070094
506 Ga0496110_0029883
507 Ga0496110_0135692
508 Ga0496110_0142561
509 Ga0496111_0009257
510 Ga0496111_0011245
511 Ga0496112_0003529
512 Ga0496112_0009904
513 Ga0496113_0017106
514 Ga0496115_0005841
515 Ga0496115_0174498
516 Ga0496122_0000199
517 Ga0496123_0000102
518 Ga0501072_0000405
519 Ga0501072_0080577
520 Ga0501075_0029756
521 Ga0501079_0356091
522 Ga0501083_0045039
523 Ga0501044_0122324
524 nmdc:mga03683_85301_c1
525 nmdc:mga03n38_16971_c1
526 nmdc:mga00v17_1897_c1
527 nmdc:mga00v17_3309_c1
528 nmdc:mga00v17_68019_c1
529 nmdc:mga0yw44_105815_c1
530 nmdc:mga0yw44_21655_c1
531 nmdc:mga0k408_18271_c1
532 nmdc:mga0k408_20443_c1
533 nmdc:mga0k408_7211_c1
534 nmdc:mga06z11_18118_c1
535 nmdc:mga06z11_25470_c1
536 nmdc:mga06z11_40587_c1
537 nmdc:mga06z11_90609_c1
538 nmdc:mga04h51_3739_c1
539 nmdc:mga04h51_72410_c1
540 nmdc:mga07m45_132577_c1
541 nmdc:mga05p37_33783_c1
542 nmdc:mga05p37_490345_c1
543 nmdc:mga05p37_5080_c1
544 nmdc:mga05p37_95_c1
545 nmdc:mga09592_1569_c1
546 nmdc:mga0qj67_51118_c1
547 nmdc:mga06r32_114_c1
548 nmdc:mga06r32_126684_c1
549 nmdc:mga06r32_52475_c1
550 nmdc:mga06r32_74874_c1
551 nmdc:mga08y16_123553_c1
552 nmdc:mga08y16_279590_c1
553 nmdc:mga08y16_303425_c1
554 nmdc:mga08y16_48_c1
555 nmdc:mga0n895_161963_c1
556 nmdc:mga0n895_57190_c1
557 nmdc:mga0sz30_30408_c1
558 Ga0495655_0037324
559 Ga0495655_0042732
560 Ga0500646_0018520
561 Ga0500618_023757
562 Ga0501084_0299473
563 Ga0501082_0102101
564 Ga0501082_0223952
565 Ga0530510_0124958
566 Ga0530510_0236222
567 2855736078
568 2855773015
569 2857540938
570 2857579925
571 2858951619
572 2883577423
573 2894773584
574 2894775312
575 2929202966
576 2929204917
577 8055911953
578 8055914053

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03401

TctC

Tripartite tricarboxylate transporter family receptor

105

377

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
2dvz-assembly1.cif.gz_A structure of a periplasmic transporter 0.9707 33 329
5oku-assembly1.cif.gz_A r. palustris rpa4515 with adipate 0.9691 34 327
2f5x-assembly3.cif.gz_C structure of periplasmic binding protein bugd 0.9655 34 327
8hkb-assembly1.cif.gz_A tpa bound-form of periplasmic terephthalate binding protein (tbp) from ideonella sakaiensis mutant k184d 0.9646 37 329
2dvz-assembly1.cif.gz_A structure of a periplasmic transporter 0.9581 33 329
ID Description Score Start End Superfamily
4x9tA02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9426 133 248 3.40.190.10
2qpqC02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9364 133 253 3.40.190.10
6hkeC02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9356 133 253 3.40.190.10
2qpqB01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Bordetella uptake gene, domain 1 0.9221 34 329 3.40.190.150
2f5xC02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.922 134 253 3.40.190.10
ID Description Score Start End GO Terms
AF-A0A520EAY2-F1-model_v4 Tripartite tricarboxylate transporter substrate binding protein 0.9745 37 329
AF-A0A5C8CF86-F1-model_v4 deleted 0.9743 44 329
AF-A0A4Q7NH98-F1-model_v4 Tripartite-type tricarboxylate transporter receptor subunit TctC 0.9726 32 329
AF-A0A7X1NZ53-F1-model_v4 Tripartite tricarboxylate transporter substrate binding protein 0.9708 34 327
AF-V8QW12-F1-model_v4 ABC transporter substrate-binding protein 0.9702 42 329

Map