F384203

General Info

Members Datasets Scaffolds Average Seq Length
281 167 281 314

Family's Representative Sequence

Representative Sequence 3300006038|Ga0075365_10001090|Ga0075365_100010909
Length 315
Sequence MSKMIHTPGIVTVDDHSATSSTFAVEPLHSGYGMTLGNSLRRVLLSSIAGAAVTSFKIEGATHEFTTVPGVKEDVVDIMLNLKGIRFRVYGDEAQNLRIVKKGKGAVTAKDIQVNADVEVVNPEHVIATLDDDKSDFVMDLVVETGRGYRTIDEVTAKKASDMIAVDAIFSPVLRVRYKVENTRVGQMTDLDKLLITVETDGTITPRDAFEEASAILVNQYTALAGKTTVESGEQLVSSSPVAGAMTHDTGDEPALNTSIEDLNLSARTTNALINNDIHTIKDLFSLSDAELRDLKGFGSKALDEVKEKLAELEL

Samples

Sample ID Description Type Environment
1 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
4 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
5 3300002244 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1 Metagenome Rhizosphere
6 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
7 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
8 3300004803 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
9 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
10 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
11 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
12 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
13 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
14 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
15 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
16 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
17 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
18 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
19 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
20 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
21 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
22 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
23 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
24 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
25 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
26 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
27 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
28 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
29 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
30 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
31 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
32 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
33 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
34 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
35 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
36 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
37 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
38 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
39 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
40 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
41 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
42 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
43 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
44 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
45 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
46 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
47 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
48 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
49 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
50 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
51 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
52 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
53 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
54 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
55 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
56 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
57 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
58 3300009993 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_106 metaG Metagenome Rhizosphere
59 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
60 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
61 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
62 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
63 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
64 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
65 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
66 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
67 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
68 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
94 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
95 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
97 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
98 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
99 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
100 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
101 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
102 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
103 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
104 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
105 3300041458 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_10 MetaG Metagenome Rhizoplane
106 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
107 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
108 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
109 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
110 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
111 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
112 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
113 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
114 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
115 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
120 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
121 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
123 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
124 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
125 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
126 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
127 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
128 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
129 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
130 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
131 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
132 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
133 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
134 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
135 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
136 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
137 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
138 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
139 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
140 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
141 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
142 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
143 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
144 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
145 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
146 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
147 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
148 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
149 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
150 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
151 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
152 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
153 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
154 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
155 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
156 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
157 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
158 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
159 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
160 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
161 3300053143 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 endosphere Metagenome Endosphere
162 3300053147 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere Metagenome Endosphere
163 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
164 3300053722 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 endosphere Metagenome Endosphere
165 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
166 3300059513 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 59R_AW_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
167 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.29
Metatranscriptomes 0.71
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 26.69
Nodule 0
Rhizoplane 1.42
Rhizosphere 71.53
Stem 0
Stem Tuber 0
Unclassified 0.36

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24741J21665_1006637 3300001915 Bacteria 2306
2 JGI24740J21852_10012465 3300001979 Bacteria 3202
3 JGI24737J22298_10000627 3300001990 Bacteria 12437
4 JGI24735J21928_10000234 3300002067 Bacteria 19508
5 JGI24742J22300_10000015 3300002244 Bacteria 27133
6 rootH1_10160477 3300003316 Bacteria 2210
7 JGI25405J52794_10033003 3300003911 Unclassified 1079
8 Ga0058862_12008170 3300004803 Bacteria 2569
9 Ga0070658_10000118 3300005327 Bacteria 71171
10 Ga0070658_10001547 3300005327 Bacteria 19493
11 Ga0070658_10013124 3300005327 Bacteria 6648
12 Ga0070658_10021675 3300005327 Bacteria 5150
13 Ga0070658_10053802 3300005327 Bacteria 3268
14 Ga0070683_100000450 3300005329 Bacteria 28685
15 Ga0070683_100000530 3300005329 Bacteria 26876
16 Ga0070690_100013110 3300005330 Bacteria 4892
17 Ga0070680_100000672 3300005336 Bacteria 23772
18 Ga0070682_100003469 3300005337 Bacteria 8728
19 Ga0070660_100000176 3300005339 Bacteria 42222
20 Ga0070660_100146601 3300005339 Bacteria 1896
21 Ga0070671_100000001 3300005355 Bacteria 1228151
22 Ga0070671_100025375 3300005355 Bacteria 4863
23 Ga0070674_100004553 3300005356 Bacteria 7911
24 Ga0070688_100044629 3300005365 Bacteria 2736
25 Ga0070659_100000215 3300005366 Bacteria 44375
26 Ga0070667_100006776 3300005367 Bacteria 9512
27 Ga0070678_100077911 3300005456 Bacteria 2502
28 Ga0070681_10004770 3300005458 Bacteria 12991
29 Ga0070681_10119439 3300005458 Unclassified 2572
30 Ga0070681_10132692 3300005458 Bacteria 2422
31 Ga0070681_10347219 3300005458 Bacteria 1394
32 Ga0068867_100004725 3300005459 Bacteria 9584
33 Ga0070685_10010420 3300005466 Bacteria 4830
34 Ga0070679_100003967 3300005530 Bacteria 13627
35 Ga0070679_100033531 3300005530 Bacteria 5084
36 Ga0070679_100038861 3300005530 Bacteria 4732
37 Ga0070679_100049541 3300005530 Bacteria 4183
38 Ga0070684_100001742 3300005535 Bacteria 15835
39 Ga0070684_100003346 3300005535 Bacteria 12008
40 Ga0070686_100006928 3300005544 Bacteria 6316
41 Ga0070665_100166644 3300005548 Bacteria 2205
42 Ga0068855_100000003 3300005563 Bacteria 589862
43 Ga0068855_100000168 3300005563 Bacteria 83242
44 Ga0068855_100011906 3300005563 Bacteria 10518
45 Ga0068855_100339731 3300005563 Unclassified 1656
46 Ga0068855_100412644 3300005563 Bacteria 1478
47 Ga0070664_100240139 3300005564 Bacteria 1626
48 Ga0068857_100000124 3300005577 Bacteria 46368
49 Ga0068857_100118547 3300005577 Bacteria 2382
50 Ga0068856_100000001 3300005614 Bacteria 565602
51 Ga0068856_100001486 3300005614 Bacteria 24509
52 Ga0068856_100001797 3300005614 Bacteria 22390
53 Ga0068863_100316026 3300005841 Bacteria 1517
54 Ga0068860_100307964 3300005843 Bacteria 1553
55 Ga0081455_10000003 3300005937 Bacteria 367763
56 Ga0075365_10001090 3300006038 Bacteria 11799
57 Ga0075365_10008718 3300006038 Bacteria 5779
58 Ga0075368_10000084 3300006042 Bacteria 23187
59 Ga0075363_100000006 3300006048 Bacteria 47292
60 Ga0075364_10001750 3300006051 Bacteria 11981
61 Ga0075364_10007125 3300006051 Bacteria 6614
62 Ga0075364_10010881 3300006051 Bacteria 5512
63 Ga0075364_10118003 3300006051 Bacteria 1775
64 Ga0075362_10000049 3300006177 Bacteria 39227
65 Ga0075362_10137044 3300006177 Bacteria 1168
66 Ga0075367_10000014 3300006178 Bacteria 37444
67 Ga0075367_10000021 3300006178 Bacteria 33969
68 Ga0075369_10000003 3300006186 Bacteria 205269
69 Ga0075369_10000057 3300006186 Bacteria 28832
70 Ga0075366_10000001 3300006195 Bacteria 569172
71 Ga0075366_10000065 3300006195 Bacteria 39633
72 Ga0075366_10000317 3300006195 Bacteria 21934
73 Ga0075366_10001099 3300006195 Bacteria 13281
74 Ga0075366_10027882 3300006195 Bacteria 3314
75 Ga0097621_100001442 3300006237 Bacteria 16323
76 Ga0075370_10002783 3300006353 Bacteria 8197
77 Ga0075370_10063439 3300006353 Bacteria 2106
78 Ga0075370_10171549 3300006353 Bacteria 1275
79 Ga0068871_100000039 3300006358 Bacteria 69204
80 Ga0068871_100397191 3300006358 Bacteria 1227
81 Ga0075428_100018351 3300006844 Bacteria 7734
82 Ga0075430_100233124 3300006846 Bacteria 1526
83 Ga0105244_10075309 3300009036 Bacteria 1677
84 Ga0105240_10000003 3300009093 Bacteria 1183681
85 Ga0105240_10005815 3300009093 Bacteria 18300
86 Ga0105240_10430475 3300009093 Bacteria 1480
87 Ga0111539_10010927 3300009094 Bacteria 11427
88 Ga0105245_10000001 3300009098 Bacteria 939270
89 Ga0105245_10000002 3300009098 Bacteria 634374
90 Ga0105245_10008353 3300009098 Bacteria 9045
91 Ga0105243_10000001 3300009148 Bacteria 1156578
92 Ga0105243_10005438 3300009148 Bacteria 9938
93 Ga0105241_10000003 3300009174 Bacteria 839043
94 Ga0105241_10001993 3300009174 Bacteria 15454
95 Ga0105241_10068781 3300009174 Bacteria 2744
96 Ga0105241_10371149 3300009174 Bacteria 1248
97 Ga0105242_10000011 3300009176 Bacteria 149791
98 Ga0105242_10011274 3300009176 Bacteria 6869
99 Ga0105248_10293356 3300009177 Bacteria 1831
100 Ga0105248_10606199 3300009177 Bacteria 1235
101 Ga0105237_10163631 3300009545 Bacteria 2224
102 Ga0105238_10108186 3300009551 Bacteria 2761
103 Ga0105238_10184560 3300009551 Unclassified 2062
104 Ga0105028_100114 3300009993 Bacteria 8330
105 Ga0105239_10052752 3300010375 Bacteria 4460
106 Ga0157373_10000351 3300013100 Bacteria 37083
107 Ga0157371_10000176 3300013102 Bacteria 93047
108 Ga0157369_10003258 3300013105 Bacteria 19325
109 Ga0157369_10159985 3300013105 Unclassified 2377
110 Ga0157374_10000031 3300013296 Bacteria 204840
111 Ga0157374_10001076 3300013296 Bacteria 23646
112 Ga0157374_10012419 3300013296 Bacteria 7410
113 Ga0157374_10040598 3300013296 Bacteria 4286
114 Ga0157374_10360021 3300013296 Bacteria 1447
115 Ga0157372_10000670 3300013307 Bacteria 37704
116 Ga0157372_10002726 3300013307 Bacteria 19106
117 Ga0163163_10021143 3300014325 Bacteria 6138
118 Ga0163163_10131354 3300014325 Bacteria 2545
119 Ga0157377_10001723 3300014745 Bacteria 9535
120 Ga0157379_10113987 3300014968 Bacteria 2430
121 Ga0207645_10005988 3300025907 Bacteria 8752
122 Ga0207705_10000167 3300025909 Bacteria 71284
123 Ga0207705_10007444 3300025909 Bacteria 8051
124 Ga0207705_10010485 3300025909 Bacteria 6739
125 Ga0207705_10027913 3300025909 Bacteria 4025
126 Ga0207705_10033204 3300025909 Bacteria 3687
127 Ga0207654_10000002 3300025911 Bacteria 1460142
128 Ga0207654_10006639 3300025911 Bacteria 5820
129 Ga0207654_10046934 3300025911 Bacteria 2465
130 Ga0207707_10004217 3300025912 Bacteria 12723
131 Ga0207707_10061504 3300025912 Bacteria 3267
132 Ga0207695_10000005 3300025913 Bacteria 1196715
133 Ga0207695_10006811 3300025913 Bacteria 14729
134 Ga0207660_10000748 3300025917 Bacteria 21610
135 Ga0207657_10000804 3300025919 Bacteria 33189
136 Ga0207657_10016618 3300025919 Bacteria 7090
137 Ga0207652_10002682 3300025921 Bacteria 14930
138 Ga0207652_10008070 3300025921 Bacteria 8450
139 Ga0207652_10063704 3300025921 Bacteria 3189
140 Ga0207652_10191676 3300025921 Bacteria 1839
141 Ga0207694_10271070 3300025924 Bacteria 1392
142 Ga0207687_10000001 3300025927 Bacteria 1130810
143 Ga0207687_10000030 3300025927 Bacteria 155548
144 Ga0207687_10021727 3300025927 Bacteria 4265
145 Ga0207644_10000001 3300025931 Bacteria 1243214
146 Ga0207644_10016889 3300025931 Bacteria 4917
147 Ga0207644_10018711 3300025931 Bacteria 4689
148 Ga0207690_10000521 3300025932 Bacteria 24993
149 Ga0207686_10000001 3300025934 Bacteria 1169580
150 Ga0207686_10007276 3300025934 Bacteria 5956
151 Ga0207709_10000002 3300025935 Bacteria 1171536
152 Ga0207669_10003257 3300025937 Bacteria 7020
153 Ga0207661_10000021 3300025944 Bacteria 205381
154 Ga0207661_10003681 3300025944 Bacteria 10682
155 Ga0207679_10188652 3300025945 Bacteria 1712
156 Ga0207667_10000008 3300025949 Bacteria 625138
157 Ga0207667_10000339 3300025949 Bacteria 64087
158 Ga0207667_10078889 3300025949 Bacteria 3412
159 Ga0207712_10001459 3300025961 Bacteria 16136
160 Ga0207658_10032403 3300025986 Bacteria 3719
161 Ga0207639_10124181 3300026041 Bacteria 2126
162 Ga0207702_10000001 3300026078 Bacteria 895738
163 Ga0207702_10001268 3300026078 Bacteria 25374
164 Ga0207702_10003219 3300026078 Bacteria 15080
165 Ga0207702_10179583 3300026078 Bacteria 1948
166 Ga0207641_10261218 3300026088 Bacteria 1621
167 Ga0207648_10043597 3300026089 Unclassified 3938
168 Ga0207648_10064628 3300026089 Unclassified 3189
169 Ga0207674_10000001 3300026116 Bacteria 616581
170 Ga0207674_10548336 3300026116 Bacteria 1117
171 Ga0209813_10000009 3300027866 Bacteria 102315
172 Ga0207428_10028579 3300027907 Bacteria 4631
173 Ga0268266_10003734 3300028379 Bacteria 14969
174 Ga0265334_10000114 3300028573 Bacteria 52821
175 Ga0265338_10000217 3300028800 Bacteria 106453
176 Ga0265338_10017812 3300028800 Bacteria 7639
177 Ga0265338_10081884 3300028800 Unclassified 2704
178 Ga0265340_10000533 3300031247 Bacteria 21017
179 Ga0265327_10000017 3300031251 Bacteria 445264
180 Ga0265327_10003601 3300031251 Bacteria 14609
181 Ga0265327_10099584 3300031251 Bacteria 1404
182 Ga0395899_0003098 3300037312 Bacteria 13233
183 Ga0395899_0008649 3300037312 Bacteria 7833
184 Ga0395899_0049607 3300037312 Bacteria 3120
185 Ga0395900_0003612 3300037418 Bacteria 16623
186 Ga0395900_0005264 3300037418 Bacteria 13568
187 Ga0395900_0077806 3300037418 Bacteria 3408
188 Ga0395898_0002536 3300037466 Bacteria 21416
189 Ga0395898_0044476 3300037466 Bacteria 4370
190 Ga0395898_0108909 3300037466 Bacteria 2656
191 Ga0395905_0000238 3300037471 Bacteria 83164
192 Ga0395905_0608944 3300037471 Bacteria 994
193 Ga0395901_0053748 3300038443 Bacteria 4185
194 Ga0395901_0103506 3300038443 Bacteria 2987
195 Ga0451798_0708924 3300041458 Bacteria 1220
196 Ga0495622_0000035 3300046557 Bacteria 122963
197 Ga0495588_0000116 3300046674 Bacteria 135919
198 Ga0495658_0003200 3300046683 Bacteria 8155
199 Ga0495649_0000182 3300046694 Bacteria 54760
200 Ga0495672_0077243 3300047320 Bacteria 1867
201 Ga0495593_0156140 3300047673 Bacteria 1153
202 Ga0496100_0227346 3300048903 Bacteria 1371
203 Ga0496109_0054472 3300048912 Bacteria 3649
204 Ga0496112_0065373 3300048915 Bacteria 3589
205 Ga0501031_0002004 3300049568 Bacteria 12844
206 Ga0501032_0000394 3300049569 Bacteria 36017
207 Ga0501034_0009643 3300049571 Bacteria 10098
208 Ga0501034_0014829 3300049571 Bacteria 8018
209 Ga0501034_0040779 3300049571 Bacteria 4698
210 Ga0501036_0006297 3300049572 Bacteria 9632
211 Ga0501037_0000133 3300049573 Bacteria 69741
212 Ga0501038_0006750 3300049574 Bacteria 10603
213 Ga0501043_0001721 3300049579 Bacteria 18919
214 Ga0501046_0000038 3300049580 Bacteria 159193
215 Ga0501047_0002015 3300049581 Bacteria 19485
216 Ga0501047_0004985 3300049581 Bacteria 12460
217 Ga0501048_0000033 3300049582 Bacteria 64896
218 Ga0501069_0037707 3300049585 Unclassified 2668
219 Ga0501070_0027994 3300049586 Bacteria 4727
220 Ga0501073_0011028 3300049589 Bacteria 6612
221 Ga0501083_0114021 3300049744 Bacteria 1775
222 Ga0501035_0000033 3300049822 Bacteria 175087
223 Ga0501035_0005497 3300049822 Bacteria 11971
224 Ga0501044_0041603 3300049823 Bacteria 4784
225 Ga0501044_0111156 3300049823 Bacteria 2748
226 nmdc:mga03683_116774_c1 3300050489 Bacteria 1184
227 nmdc:mga03683_66_c2 3300050489 Bacteria 39227
228 nmdc:mga00v17_1384_c1 3300050491 Bacteria 12725
229 nmdc:mga00v17_145_c1 3300050491 Bacteria 23071
230 nmdc:mga0yw44_18435_c1 3300050492 Bacteria 3823
231 nmdc:mga0yw44_2_c1 3300050492 Bacteria 586884
232 nmdc:mga0k408_144_c1 3300050493 Bacteria 36305
233 nmdc:mga0k408_14_c3 3300050493 Bacteria 36052
234 nmdc:mga0k408_1_c1 3300050493 Bacteria 1089059
235 nmdc:mga0k408_22018_c1 3300050493 Bacteria 3586
236 nmdc:mga0k408_24856_c1 3300050493 Bacteria 3388
237 nmdc:mga0k408_24_c4 3300050493 Bacteria 20225
238 nmdc:mga06z11_14_c1 3300050494 Bacteria 96662
239 nmdc:mga06z11_53_c2 3300050494 Bacteria 47411
240 nmdc:mga04h51_10_c1 3300050495 Bacteria 102434
241 nmdc:mga07m45_89921_c1 3300050496 Bacteria 1301
242 nmdc:mga0qj67_224137_c1 3300050509 Bacteria 1526
243 nmdc:mga08y16_7379_c1 3300050511 Bacteria 11522
244 nmdc:mga0sz30_1_c1 3300050516 Bacteria 796501
245 nmdc:mga0sz30_49702_c1 3300050516 Bacteria 1777
246 nmdc:mga0sz30_8_c1 3300050516 Bacteria 107909
247 Ga0500610_0000001 3300053079 Bacteria 185468
248 Ga0500610_0118916 3300053079 Bacteria 1352
249 Ga0500643_000010 3300053087 Bacteria 408084
250 Ga0500644_0000636 3300053088 Bacteria 13080
251 Ga0500644_0000923 3300053088 Bacteria 9347
252 Ga0500644_0044767 3300053088 Bacteria 1487
253 Ga0500646_0000426 3300053090 Bacteria 12557
254 Ga0500583_0000067 3300053092 Bacteria 64775
255 Ga0500566_0000001 3300053094 Bacteria 1101031
256 Ga0500650_0000001 3300053098 Bacteria 818797
257 Ga0500555_000001 3300053103 Bacteria 1353713
258 Ga0500555_000002 3300053103 Bacteria 1314346
259 Ga0500556_0000246 3300053104 Bacteria 43933
260 Ga0500562_008592 3300053108 Bacteria 2580
261 Ga0500562_032171 3300053108 Bacteria 1384
262 Ga0500594_0000001 3300053118 Bacteria 1178472
263 Ga0500594_0000711 3300053118 Bacteria 7094
264 Ga0500614_000001 3300053123 Bacteria 1274484
265 Ga0500614_021660 3300053123 Bacteria 1493
266 Ga0500628_000006 3300053129 Bacteria 154858
267 Ga0500642_0000722 3300053130 Bacteria 9746
268 Ga0500652_000084 3300053131 Bacteria 39562
269 Ga0500655_000374 3300053133 Bacteria 9718
270 Ga0500559_0039122 3300053136 Bacteria 2062
271 Ga0500561_0000001 3300053137 Bacteria 957685
272 Ga0500568_0020917 3300053139 Bacteria 2823
273 Ga0500577_0000856 3300053142 Bacteria 7873
274 Ga0500577_0003400 3300053142 Bacteria 4132
275 Ga0500579_003450 3300053143 Bacteria 9502
276 Ga0500589_000008 3300053147 Bacteria 137145
277 Ga0500604_0007037 3300053151 Bacteria 2977
278 Ga0500649_000014 3300053722 Bacteria 56198
279 Ga0500611_001326 3300053727 Bacteria 2691
280 Ga0587094_000374 3300059513 Bacteria 3300
281 Ga0501082_0012274 3300060353 Bacteria 7363

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300009036 Ga0105244_10075309 Ga0105244_100753091 255
2 3300037312 Ga0395899_0049607 Ga0395899_0049607_257_1102 279
3 3300037418 Ga0395900_0077806 Ga0395900_0077806_1852_2697 279
4 3300047673 Ga0495593_0156140 Ga0495593_0156140_278_1126 281
5 3300053130 Ga0500642_0000722 Ga0500642_0000722_8884_9735 282
6 3300028800 Ga0265338_10017812 Ga0265338_100178128 284
7 3300005530 Ga0070679_100038861 Ga0070679_1000388617 292
8 3300005563 Ga0068855_100412644 Ga0068855_1004126442 292
9 3300025913 Ga0207695_10000005 Ga0207695_10000005872 292
10 3300025934 Ga0207686_10000001 Ga0207686_10000001713 292
11 3300025935 Ga0207709_10000002 Ga0207709_10000002831 292
12 3300026089 Ga0207648_10043597 Ga0207648_100435972 292
13 3300005459 Ga0068867_100004725 Ga0068867_10000472512 295
14 3300009093 Ga0105240_10000003 Ga0105240_10000003862 295
15 3300009148 Ga0105243_10000001 Ga0105243_10000001429 295
16 3300009176 Ga0105242_10000011 Ga0105242_1000001122 295
17 3300009545 Ga0105237_10163631 Ga0105237_101636312 295
18 3300053151 Ga0500604_0007037 Ga0500604_0007037_924_1865 301
19 3300028800 Ga0265338_10081884 Ga0265338_100818843 302
20 3300005327 Ga0070658_10000118 Ga0070658_1000011817 305
21 3300025909 Ga0207705_10000167 Ga0207705_1000016771 305
22 3300053079 Ga0500610_0118916 Ga0500610_0118916_417_1337 305
23 3300006353 Ga0075370_10171549 Ga0075370_101715492 306
24 3300050496 nmdc:mga07m45_89921_c1 nmdc:mga07m45_89921_c1_135_1088 306
25 3300053088 Ga0500644_0044767 Ga0500644_0044767_550_1473 306
26 3300005327 Ga0070658_10021675 Ga0070658_100216756 308
27 3300005843 Ga0068860_100307964 Ga0068860_1003079642 309
28 3300009094 Ga0111539_10010927 Ga0111539_100109278 309
29 3300027907 Ga0207428_10028579 Ga0207428_100285796 309
30 3300041458 Ga0451798_0708924 Ga0451798_0708924_201_1148 309
31 3300050511 nmdc:mga08y16_7379_c1 nmdc:mga08y16_7379_c1_6694_7635 309
32 3300006844 Ga0075428_100018351 Ga0075428_1000183516 310
33 3300006846 Ga0075430_100233124 Ga0075430_1002331241 310
34 3300050509 nmdc:mga0qj67_224137_c1 nmdc:mga0qj67_224137_c1_522_1457 310
35 3300002244 JGI24742J22300_10000015 JGI24742J22300_1000001527 311
36 3300005327 Ga0070658_10053802 Ga0070658_100538023 311
37 3300005330 Ga0070690_100013110 Ga0070690_1000131102 311
38 3300005530 Ga0070679_100033531 Ga0070679_1000335318 311
39 3300005544 Ga0070686_100006928 Ga0070686_1000069285 311
40 3300005563 Ga0068855_100011906 Ga0068855_1000119065 311
41 3300005614 Ga0068856_100000001 Ga0068856_100000001307 311
42 3300006178 Ga0075367_10000014 Ga0075367_1000001430 311
43 3300006195 Ga0075366_10027882 Ga0075366_100278826 311
44 3300009093 Ga0105240_10430475 Ga0105240_104304752 311
45 3300009098 Ga0105245_10008353 Ga0105245_100083537 311
46 3300009174 Ga0105241_10371149 Ga0105241_103711492 311
47 3300009551 Ga0105238_10184560 Ga0105238_101845602 311
48 3300010375 Ga0105239_10052752 Ga0105239_100527523 311
49 3300013105 Ga0157369_10159985 Ga0157369_101599852 311
50 3300013296 Ga0157374_10012419 Ga0157374_1001241910 311
51 3300013296 Ga0157374_10360021 Ga0157374_103600212 311
52 3300013307 Ga0157372_10000670 Ga0157372_1000067024 311
53 3300025907 Ga0207645_10005988 Ga0207645_1000598815 311
54 3300025909 Ga0207705_10033204 Ga0207705_100332047 311
55 3300025921 Ga0207652_10063704 Ga0207652_100637046 311
56 3300025924 Ga0207694_10271070 Ga0207694_102710702 311
57 3300025927 Ga0207687_10021727 Ga0207687_100217277 311
58 3300025949 Ga0207667_10078889 Ga0207667_100788895 311
59 3300026041 Ga0207639_10124181 Ga0207639_101241814 311
60 3300026078 Ga0207702_10000001 Ga0207702_10000001856 311
61 3300026078 Ga0207702_10179583 Ga0207702_101795833 311
62 3300050493 nmdc:mga0k408_22018_c1 nmdc:mga0k408_22018_c1_1863_2816 311
63 3300050494 nmdc:mga06z11_53_c2 nmdc:mga06z11_53_c2_10409_11362 311
64 3300005327 Ga0070658_10013124 Ga0070658_100131243 312
65 3300005339 Ga0070660_100000176 Ga0070660_10000017637 312
66 3300005356 Ga0070674_100004553 Ga0070674_1000045537 312
67 3300005365 Ga0070688_100044629 Ga0070688_1000446295 312
68 3300005366 Ga0070659_100000215 Ga0070659_10000021538 312
69 3300005458 Ga0070681_10004770 Ga0070681_100047707 312
70 3300005458 Ga0070681_10347219 Ga0070681_103472192 312
71 3300005466 Ga0070685_10010420 Ga0070685_100104207 312
72 3300005530 Ga0070679_100049541 Ga0070679_1000495411 312
73 3300005548 Ga0070665_100166644 Ga0070665_1001666443 312
74 3300005563 Ga0068855_100000168 Ga0068855_10000016868 312
75 3300005577 Ga0068857_100000124 Ga0068857_10000012419 312
76 3300005577 Ga0068857_100118547 Ga0068857_1001185472 312
77 3300009176 Ga0105242_10011274 Ga0105242_100112745 312
78 3300009177 Ga0105248_10606199 Ga0105248_106061992 312
79 3300013296 Ga0157374_10040598 Ga0157374_100405987 312
80 3300014325 Ga0163163_10021143 Ga0163163_100211437 312
81 3300014325 Ga0163163_10131354 Ga0163163_101313542 312
82 3300025909 Ga0207705_10007444 Ga0207705_1000744413 312
83 3300025909 Ga0207705_10010485 Ga0207705_1001048512 312
84 3300025912 Ga0207707_10004217 Ga0207707_1000421716 312
85 3300025919 Ga0207657_10000804 Ga0207657_1000080421 312
86 3300025921 Ga0207652_10191676 Ga0207652_101916763 312
87 3300025931 Ga0207644_10018711 Ga0207644_100187113 312
88 3300025932 Ga0207690_10000521 Ga0207690_1000052136 312
89 3300025934 Ga0207686_10007276 Ga0207686_100072766 312
90 3300025937 Ga0207669_10003257 Ga0207669_100032574 312
91 3300025949 Ga0207667_10000339 Ga0207667_1000033940 312
92 3300026089 Ga0207648_10064628 Ga0207648_100646284 312
93 3300026116 Ga0207674_10000001 Ga0207674_10000001384 312
94 3300028379 Ga0268266_10003734 Ga0268266_1000373425 312
95 3300031251 Ga0265327_10099584 Ga0265327_100995842 312
96 3300037471 Ga0395905_0000238 Ga0395905_0000238_82154_83098 312
97 3300038443 Ga0395901_0053748 Ga0395901_0053748_3224_4168 312
98 3300047320 Ga0495672_0077243 Ga0495672_0077243_916_1857 312
99 3300048903 Ga0496100_0227346 Ga0496100_0227346_365_1309 312
100 3300048912 Ga0496109_0054472 Ga0496109_0054472_1498_2442 312
101 3300048915 Ga0496112_0065373 Ga0496112_0065373_1523_2467 312
102 3300053090 Ga0500646_0000426 Ga0500646_0000426_1750_2694 312
103 3300053098 Ga0500650_0000001 Ga0500650_0000001_528699_529643 312
104 3300053108 Ga0500562_008592 Ga0500562_008592_952_1896 312
105 3300053118 Ga0500594_0000001 Ga0500594_0000001_12816_13760 312
106 3300053133 Ga0500655_000374 Ga0500655_000374_7356_8300 312
107 3300053142 Ga0500577_0000856 Ga0500577_0000856_2552_3496 312
108 3300053143 Ga0500579_003450 Ga0500579_003450_3525_4469 312
109 3300003911 JGI25405J52794_10033003 JGI25405J52794_100330031 313
110 3300005355 Ga0070671_100025375 Ga0070671_1000253752 313
111 3300005841 Ga0068863_100316026 Ga0068863_1003160262 313
112 3300005937 Ga0081455_10000003 Ga0081455_10000003270 313
113 3300009177 Ga0105248_10293356 Ga0105248_102933562 313
114 3300013296 Ga0157374_10001076 Ga0157374_1000107621 313
115 3300014745 Ga0157377_10001723 Ga0157377_100017233 313
116 3300014968 Ga0157379_10113987 Ga0157379_101139874 313
117 3300025931 Ga0207644_10016889 Ga0207644_100168892 313
118 3300026088 Ga0207641_10261218 Ga0207641_102612183 313
119 3300028573 Ga0265334_10000114 Ga0265334_1000011445 313
120 3300028800 Ga0265338_10000217 Ga0265338_1000021793 313
121 3300031247 Ga0265340_10000533 Ga0265340_1000053323 313
122 3300049568 Ga0501031_0002004 Ga0501031_0002004_6332_7282 313
123 3300049569 Ga0501032_0000394 Ga0501032_0000394_8264_9214 313
124 3300049571 Ga0501034_0009643 Ga0501034_0009643_2427_3377 313
125 3300049572 Ga0501036_0006297 Ga0501036_0006297_2408_3358 313
126 3300049573 Ga0501037_0000133 Ga0501037_0000133_42830_43780 313
127 3300049574 Ga0501038_0006750 Ga0501038_0006750_2487_3437 313
128 3300049579 Ga0501043_0001721 Ga0501043_0001721_14878_15828 313
129 3300049580 Ga0501046_0000038 Ga0501046_0000038_106409_107359 313
130 3300049581 Ga0501047_0004985 Ga0501047_0004985_10721_11671 313
131 3300049582 Ga0501048_0000033 Ga0501048_0000033_57204_58154 313
132 3300049585 Ga0501069_0037707 Ga0501069_0037707_1137_2087 313
133 3300049586 Ga0501070_0027994 Ga0501070_0027994_2170_3120 313
134 3300049589 Ga0501073_0011028 Ga0501073_0011028_1346_2296 313
135 3300049822 Ga0501035_0005497 Ga0501035_0005497_4952_5902 313
136 3300049823 Ga0501044_0041603 Ga0501044_0041603_2461_3411 313
137 3300050493 nmdc:mga0k408_24856_c1 nmdc:mga0k408_24856_c1_2370_3314 313
138 3300059513 Ga0587094_000374 Ga0587094_000374_1432_2382 313
139 3300060353 Ga0501082_0012274 Ga0501082_0012274_4868_5818 313
140 3300005355 Ga0070671_100000001 Ga0070671_100000001447 314
141 3300005614 Ga0068856_100001486 Ga0068856_10000148618 314
142 3300006038 Ga0075365_10001090 Ga0075365_100010909 314
143 3300006051 Ga0075364_10118003 Ga0075364_101180032 314
144 3300006177 Ga0075362_10000049 Ga0075362_1000004936 314
145 3300006186 Ga0075369_10000003 Ga0075369_10000003221 314
146 3300006186 Ga0075369_10000057 Ga0075369_1000005731 314
147 3300006195 Ga0075366_10000001 Ga0075366_10000001357 314
148 3300006353 Ga0075370_10063439 Ga0075370_100634392 314
149 3300025931 Ga0207644_10000001 Ga0207644_10000001990 314
150 3300026078 Ga0207702_10001268 Ga0207702_1000126819 314
151 3300026116 Ga0207674_10548336 Ga0207674_105483362 314
152 3300046557 Ga0495622_0000035 Ga0495622_0000035_39568_40515 314
153 3300046683 Ga0495658_0003200 Ga0495658_0003200_2160_3107 314
154 3300050489 nmdc:mga03683_66_c2 nmdc:mga03683_66_c2_7602_8549 314
155 3300050492 nmdc:mga0yw44_2_c1 nmdc:mga0yw44_2_c1_304242_305189 314
156 3300050493 nmdc:mga0k408_1_c1 nmdc:mga0k408_1_c1_748038_748985 314
157 3300050516 nmdc:mga0sz30_1_c1 nmdc:mga0sz30_1_c1_325038_325985 314
158 3300050516 nmdc:mga0sz30_8_c1 nmdc:mga0sz30_8_c1_100623_101570 314
159 3300053087 Ga0500643_000010 Ga0500643_000010_325735_326685 314
160 3300053088 Ga0500644_0000636 Ga0500644_0000636_10390_11337 314
161 3300053094 Ga0500566_0000001 Ga0500566_0000001_685886_686833 314
162 3300053123 Ga0500614_021660 Ga0500614_021660_507_1454 314
163 3300053136 Ga0500559_0039122 Ga0500559_0039122_581_1528 314
164 3300053139 Ga0500568_0020917 Ga0500568_0020917_1776_2726 314
165 3300053142 Ga0500577_0003400 Ga0500577_0003400_86_1033 314
166 3300053727 Ga0500611_001326 Ga0500611_001326_835_1782 314
167 3300001990 JGI24737J22298_10000627 JGI24737J22298_100006277 315
168 3300002067 JGI24735J21928_10000234 JGI24735J21928_1000023412 315
169 3300004803 Ga0058862_12008170 Ga0058862_120081702 315
170 3300005327 Ga0070658_10001547 Ga0070658_100015475 315
171 3300005329 Ga0070683_100000450 Ga0070683_10000045030 315
172 3300005336 Ga0070680_100000672 Ga0070680_10000067241 315
173 3300005337 Ga0070682_100003469 Ga0070682_1000034698 315
174 3300005339 Ga0070660_100146601 Ga0070660_1001466013 315
175 3300005458 Ga0070681_10119439 Ga0070681_101194391 315
176 3300005458 Ga0070681_10132692 Ga0070681_101326924 315
177 3300005530 Ga0070679_100003967 Ga0070679_10000396724 315
178 3300005535 Ga0070684_100003346 Ga0070684_10000334619 315
179 3300005563 Ga0068855_100000003 Ga0068855_100000003159 315
180 3300005563 Ga0068855_100339731 Ga0068855_1003397312 315
181 3300006042 Ga0075368_10000084 Ga0075368_1000008411 315
182 3300006048 Ga0075363_100000006 Ga0075363_10000000638 315
183 3300006051 Ga0075364_10001750 Ga0075364_1000175010 315
184 3300006051 Ga0075364_10007125 Ga0075364_100071253 315
185 3300006051 Ga0075364_10010881 Ga0075364_100108817 315
186 3300006177 Ga0075362_10137044 Ga0075362_101370441 315
187 3300006178 Ga0075367_10000021 Ga0075367_1000002122 315
188 3300006195 Ga0075366_10000317 Ga0075366_1000031724 315
189 3300006353 Ga0075370_10002783 Ga0075370_100027838 315
190 3300009098 Ga0105245_10000001 Ga0105245_10000001319 315
191 3300009174 Ga0105241_10000003 Ga0105241_10000003144 315
192 3300009993 Ga0105028_100114 Ga0105028_10011412 315
193 3300013105 Ga0157369_10003258 Ga0157369_1000325832 315
194 3300013307 Ga0157372_10002726 Ga0157372_1000272634 315
195 3300025909 Ga0207705_10027913 Ga0207705_100279135 315
196 3300025911 Ga0207654_10000002 Ga0207654_100000021065 315
197 3300025912 Ga0207707_10061504 Ga0207707_100615043 315
198 3300025917 Ga0207660_10000748 Ga0207660_1000074812 315
199 3300025919 Ga0207657_10016618 Ga0207657_100166183 315
200 3300025921 Ga0207652_10002682 Ga0207652_1000268212 315
201 3300025921 Ga0207652_10008070 Ga0207652_100080706 315
202 3300025927 Ga0207687_10000030 Ga0207687_10000030120 315
203 3300025944 Ga0207661_10000021 Ga0207661_10000021192 315
204 3300025949 Ga0207667_10000008 Ga0207667_10000008158 315
205 3300027866 Ga0209813_10000009 Ga0209813_1000000953 315
206 3300031251 Ga0265327_10000017 Ga0265327_10000017187 315
207 3300031251 Ga0265327_10003601 Ga0265327_100036016 315
208 3300037312 Ga0395899_0003098 Ga0395899_0003098_3595_4554 315
209 3300037312 Ga0395899_0008649 Ga0395899_0008649_4674_5630 315
210 3300037418 Ga0395900_0003612 Ga0395900_0003612_5581_6537 315
211 3300037418 Ga0395900_0005264 Ga0395900_0005264_677_1633 315
212 3300037466 Ga0395898_0002536 Ga0395898_0002536_18327_19286 315
213 3300037466 Ga0395898_0044476 Ga0395898_0044476_3308_4264 315
214 3300037466 Ga0395898_0108909 Ga0395898_0108909_994_1950 315
215 3300037471 Ga0395905_0608944 Ga0395905_0608944_21_977 315
216 3300038443 Ga0395901_0103506 Ga0395901_0103506_1925_2881 315
217 3300046674 Ga0495588_0000116 Ga0495588_0000116_15073_16023 315
218 3300046694 Ga0495649_0000182 Ga0495649_0000182_20042_20989 315
219 3300049571 Ga0501034_0040779 Ga0501034_0040779_1911_2867 315
220 3300049744 Ga0501083_0114021 Ga0501083_0114021_501_1460 315
221 3300050489 nmdc:mga03683_116774_c1 nmdc:mga03683_116774_c1_220_1170 315
222 3300050491 nmdc:mga00v17_1384_c1 nmdc:mga00v17_1384_c1_3168_4115 315
223 3300050491 nmdc:mga00v17_145_c1 nmdc:mga00v17_145_c1_12603_13553 315
224 3300050493 nmdc:mga0k408_24_c4 nmdc:mga0k408_24_c4_14186_15133 315
225 3300050494 nmdc:mga06z11_14_c1 nmdc:mga06z11_14_c1_21030_21986 315
226 3300050495 nmdc:mga04h51_10_c1 nmdc:mga04h51_10_c1_45312_46268 315
227 3300050516 nmdc:mga0sz30_49702_c1 nmdc:mga0sz30_49702_c1_773_1729 315
228 3300053092 Ga0500583_0000067 Ga0500583_0000067_15358_16308 315
229 3300053104 Ga0500556_0000246 Ga0500556_0000246_3884_4840 315
230 3300053123 Ga0500614_000001 Ga0500614_000001_217549_218499 315
231 3300053137 Ga0500561_0000001 Ga0500561_0000001_502115_503062 315
232 3300053147 Ga0500589_000008 Ga0500589_000008_41601_42551 315
233 3300053722 Ga0500649_000014 Ga0500649_000014_17933_18883 315
234 3300001915 JGI24741J21665_1006637 JGI24741J21665_10066373 316
235 3300001979 JGI24740J21852_10012465 JGI24740J21852_100124652 316
236 3300003316 rootH1_10160477 rootH1_101604772 316
237 3300005329 Ga0070683_100000530 Ga0070683_1000005302 316
238 3300005367 Ga0070667_100006776 Ga0070667_1000067762 316
239 3300005456 Ga0070678_100077911 Ga0070678_1000779114 316
240 3300005535 Ga0070684_100001742 Ga0070684_10000174217 316
241 3300005564 Ga0070664_100240139 Ga0070664_1002401391 316
242 3300005614 Ga0068856_100001797 Ga0068856_10000179716 316
243 3300006038 Ga0075365_10008718 Ga0075365_100087185 316
244 3300006195 Ga0075366_10000065 Ga0075366_1000006530 316
245 3300006195 Ga0075366_10001099 Ga0075366_1000109911 316
246 3300006237 Ga0097621_100001442 Ga0097621_10000144223 316
247 3300006358 Ga0068871_100000039 Ga0068871_10000003963 316
248 3300006358 Ga0068871_100397191 Ga0068871_1003971912 316
249 3300009093 Ga0105240_10005815 Ga0105240_1000581524 316
250 3300009098 Ga0105245_10000002 Ga0105245_10000002263 316
251 3300009148 Ga0105243_10005438 Ga0105243_1000543814 316
252 3300009174 Ga0105241_10001993 Ga0105241_100019933 316
253 3300009174 Ga0105241_10068781 Ga0105241_100687814 316
254 3300009551 Ga0105238_10108186 Ga0105238_101081862 316
255 3300013100 Ga0157373_10000351 Ga0157373_1000035142 316
256 3300013102 Ga0157371_10000176 Ga0157371_1000017636 316
257 3300013296 Ga0157374_10000031 Ga0157374_10000031108 316
258 3300025911 Ga0207654_10006639 Ga0207654_100066392 316
259 3300025911 Ga0207654_10046934 Ga0207654_100469344 316
260 3300025913 Ga0207695_10006811 Ga0207695_1000681122 316
261 3300025927 Ga0207687_10000001 Ga0207687_10000001948 316
262 3300025944 Ga0207661_10003681 Ga0207661_1000368117 316
263 3300025945 Ga0207679_10188652 Ga0207679_101886522 316
264 3300025961 Ga0207712_10001459 Ga0207712_100014596 316
265 3300025986 Ga0207658_10032403 Ga0207658_100324033 316
266 3300026078 Ga0207702_10003219 Ga0207702_100032195 316
267 3300049571 Ga0501034_0014829 Ga0501034_0014829_1496_2455 316
268 3300049581 Ga0501047_0002015 Ga0501047_0002015_12502_13461 316
269 3300049822 Ga0501035_0000033 Ga0501035_0000033_170503_171462 316
270 3300049823 Ga0501044_0111156 Ga0501044_0111156_220_1179 316
271 3300050492 nmdc:mga0yw44_18435_c1 nmdc:mga0yw44_18435_c1_772_1722 316
272 3300050493 nmdc:mga0k408_144_c1 nmdc:mga0k408_144_c1_26788_27738 316
273 3300050493 nmdc:mga0k408_14_c3 nmdc:mga0k408_14_c3_26917_27870 316
274 3300053079 Ga0500610_0000001 Ga0500610_0000001_39547_40500 316
275 3300053088 Ga0500644_0000923 Ga0500644_0000923_4667_5620 316
276 3300053103 Ga0500555_000001 Ga0500555_000001_814173_815126 316
277 3300053103 Ga0500555_000002 Ga0500555_000002_455401_456354 316
278 3300053108 Ga0500562_032171 Ga0500562_032171_93_1046 316
279 3300053118 Ga0500594_0000711 Ga0500594_0000711_4525_5478 316
280 3300053129 Ga0500628_000006 Ga0500628_000006_131213_132166 316
281 3300053131 Ga0500652_000084 Ga0500652_000084_36165_37118 316

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01193

RNA_pol_L

RNA polymerase Rpb3/Rpb11 dimerisation domain

26

221

0.99

PF01000

RNA_pol_A_bac

RNA polymerase Rpb3/RpoA insert domain

56

171

0.97

PF03118

RNA_pol_A_CTD

Bacterial RNA polymerase, alpha chain C terminal domain

247

312

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
7x76-assembly1.cif.gz_S cryo-em structure of streptomyces coelicolor rnap-promoter open complex with two zur dimers 0.9673 260 313
1z3e-assembly1.cif.gz_B crystal structure of spx in complex with the c-terminal domain of the rna polymerase alpha subunit 0.9643 253 316
3n97-assembly1.cif.gz_C rna polymerase alpha c-terminal domain (e. coli) and sigma region 4 (t. aq. mutant) bound to (up,-35 element) dna 0.9494 253 313
8hvr-assembly1.cif.gz_A cryo-em structure of afsr-dependent transcription activation complex with afss promoter 0.9466 7 226
5zx2-assembly1.cif.gz_A mycobacterium tuberculosis rna polymerase transcription initiation complex with ecf sigma factor sigma h and 7nt rna 0.9441 8 224
ID Description Score Start End Superfamily
1z3eB00 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9643 253 316 1.10.150.20
4meyB03 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9546 257 316 1.10.150.20
3n4mC00 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9504 256 316 1.10.150.20
3n97C00 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9494 253 313 1.10.150.20
4lk1H02 Mainly Beta;Beta Complex;RNA Polymerase Alpha Subunit; Chain A, domain 2;DNA-directed RNA polymerase, insert domain 0.9459 50 153 2.170.120.12
ID Description Score Start End GO Terms
AF-A6CGQ3-F1-model_v4 deleted 0.9813 17 221
AF-A0A7C5A976-F1-model_v4 DNA-directed RNA polymerase subunit alpha (EC 2.7.7.6) 0.9781 38 225 GO:0000428
GO:0001054
GO:0001055
GO:0001056
GO:0001057
GO:0001058
GO:0001066
GO:0003677
GO:0046983
AF-S5REI7-F1-model_v4 DNA-dependent RNA polymerase alpha subunit 0.9765 41 158 GO:0003899
GO:0006351
GO:0046983
AF-X1MM23-F1-model_v4 DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein 0.974 4 221 GO:0000428
GO:0003677
GO:0003899
GO:0006351
GO:0046983
AF-A1IUZ7-F1-model_v4 RNA polymerase alpha subunit 0.968 44 223 GO:0000428
GO:0003677
GO:0003899
GO:0006351
GO:0046983

Feature Viewer

pLDDT pTM Quality
81.55 0.63 Medium
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map