F383142

General Info

Members Datasets Scaffolds Average Seq Length
279 151 279 240

Family's Representative Sequence

Representative Sequence 3300031247|Ga0265340_10118462|Ga0265340_101184622
Length 269
Sequence MPDDVPPGGGLAPRRPRAVLFREPVGYPPVVVRLDVLLARNAGWSRTAARAVIAEGRVQIGGTVVEDPRREIAPEALPLVVVLDDEELPLHDRVTLALNKPLGCVTALRDPRHPTAYELLQEAPLFGELRPVGRLDLDTSGLLIWSTDGTEIQRLTHPKRAVPRTYQAALAGPFGPLPAQLVLDDGHEPKISALETLPREAAHPSLDVPAETGALATITIIGGAYHEVRRIFAALGSHVLGLCRVSFGEVALPRDLAPGEYQLLPNVRR

Samples

Sample ID Description Type Environment
1 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
8 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
9 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
10 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
11 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
12 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
15 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
16 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
17 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
18 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
19 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
20 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
21 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
22 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
23 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
24 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
25 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
26 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
27 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
28 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
29 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
30 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
31 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
32 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
33 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
34 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
35 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
36 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
37 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
38 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
39 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
40 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
42 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
44 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
45 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
46 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
47 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
48 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
49 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
50 3300025271 Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
84 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
86 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
87 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
88 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
89 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
90 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
91 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
92 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
93 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
94 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
95 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
96 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
97 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
98 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
99 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
100 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
101 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
102 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
103 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
104 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
105 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
106 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
107 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
108 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
109 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
110 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
111 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
112 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
113 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
114 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
115 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
116 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
117 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
118 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
119 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
120 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
121 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
122 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
123 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
124 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
125 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
126 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
127 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
128 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
129 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
130 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
131 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
132 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
133 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
134 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
135 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
136 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
137 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
138 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
139 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
140 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
141 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
142 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
143 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
144 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
145 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
146 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
147 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
148 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
149 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
150 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
151 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.36
Nodule 0
Rhizoplane 5.73
Rhizosphere 92.47
Stem 0
Stem Tuber 0
Unclassified 1.43

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10184867 3300003320 Bacteria 1380
2 rootH1_10019037 3300003323 Bacteria 2697
3 rootH1_10107564 3300003323 Bacteria 3907
4 Ga0070676_10029254 3300005328 Bacteria 3133
5 Ga0070683_100538090 3300005329 Bacteria 1117
6 Ga0070683_100723125 3300005329 Unclassified 954
7 Ga0070690_100018544 3300005330 Bacteria 4206
8 Ga0070690_100220099 3300005330 Bacteria 1330
9 Ga0070670_100029991 3300005331 Bacteria 4683
10 Ga0070670_100404819 3300005331 Bacteria 1205
11 Ga0070666_10042533 3300005335 Bacteria 3041
12 Ga0070680_100021724 3300005336 Bacteria 5103
13 Ga0068868_100251433 3300005338 Bacteria 1488
14 Ga0070689_100000005 3300005340 Bacteria 396551
15 Ga0070689_100012638 3300005340 Bacteria 6088
16 Ga0070689_100054727 3300005340 Bacteria 3090
17 Ga0070687_100037515 3300005343 Bacteria 2423
18 Ga0070687_100082992 3300005343 Bacteria 1754
19 Ga0070687_100092991 3300005343 Bacteria 1672
20 Ga0070669_100086514 3300005353 Bacteria 2342
21 Ga0070675_100089179 3300005354 Bacteria 2582
22 Ga0070671_100268572 3300005355 Bacteria 1450
23 Ga0070674_100033578 3300005356 Bacteria 3417
24 Ga0070673_100002660 3300005364 Bacteria 10936
25 Ga0070673_100076057 3300005364 Bacteria 2710
26 Ga0070673_100615248 3300005364 Unclassified 992
27 Ga0070688_100121267 3300005365 Bacteria 1752
28 Ga0070688_100150215 3300005365 Bacteria 1592
29 Ga0070659_100048958 3300005366 Bacteria 3322
30 Ga0070659_100732112 3300005366 Bacteria 857
31 Ga0070667_100341340 3300005367 Bacteria 1354
32 Ga0070667_100414640 3300005367 Bacteria 1227
33 Ga0070713_100258412 3300005436 Bacteria 1591
34 Ga0070701_10149992 3300005438 Bacteria 1341
35 Ga0070700_100006457 3300005441 Bacteria 6276
36 Ga0070678_100106955 3300005456 Bacteria 2181
37 Ga0070662_100156732 3300005457 Bacteria 1778
38 Ga0068867_100058584 3300005459 Bacteria 2854
39 Ga0070707_100217639 3300005468 Bacteria 1861
40 Ga0070679_100015902 3300005530 Bacteria 7242
41 Ga0070679_100033934 3300005530 Bacteria 5055
42 Ga0070679_100112338 3300005530 Bacteria 2710
43 Ga0070684_100074489 3300005535 Bacteria 2993
44 Ga0070684_100296586 3300005535 Bacteria 1483
45 Ga0070684_100391155 3300005535 Unclassified 1281
46 Ga0070672_100024801 3300005543 Bacteria 4438
47 Ga0070672_100034055 3300005543 Bacteria 3863
48 Ga0070672_100421392 3300005543 Unclassified 1147
49 Ga0070686_100000905 3300005544 Bacteria 17233
50 Ga0070686_100008360 3300005544 Bacteria 5794
51 Ga0068855_100016028 3300005563 Bacteria 9015
52 Ga0068855_101062096 3300005563 Bacteria 848
53 Ga0068856_100070004 3300005614 Bacteria 3470
54 Ga0068856_100154566 3300005614 Bacteria 2304
55 Ga0068856_100278633 3300005614 Bacteria 1689
56 Ga0070702_100274203 3300005615 Bacteria 1155
57 Ga0068859_100607786 3300005617 Bacteria 1186
58 Ga0068866_10074322 3300005718 Bacteria 1807
59 Ga0068861_100053938 3300005719 Bacteria 3061
60 Ga0068860_100353026 3300005843 Bacteria 1447
61 Ga0068862_100713093 3300005844 Bacteria 973
62 Ga0068865_100098079 3300006881 Bacteria 2140
63 Ga0097620_100607873 3300006931 Bacteria 1186
64 Ga0105240_10011515 3300009093 Bacteria 12311
65 Ga0105240_10225492 3300009093 Unclassified 2181
66 Ga0111539_10001200 3300009094 Bacteria 34497
67 Ga0105241_10253649 3300009174 Bacteria 1492
68 Ga0105237_10006159 3300009545 Bacteria 13409
69 Ga0105238_10004832 3300009551 Bacteria 13332
70 Ga0105238_10192642 3300009551 Bacteria 2014
71 Ga0157374_10199035 3300013296 Unclassified 1961
72 Ga0157378_10059610 3300013297 Bacteria 3405
73 Ga0163163_10732718 3300014325 Unclassified 1052
74 Ga0157376_10607308 3300014969 Unclassified 1089
75 Ga0207666_1006044 3300025271 Bacteria 1562
76 Ga0207680_10070919 3300025903 Bacteria 2158
77 Ga0207645_10029134 3300025907 Bacteria 3559
78 Ga0207705_10030267 3300025909 Bacteria 3862
79 Ga0207654_10121459 3300025911 Bacteria 1641
80 Ga0207695_10009129 3300025913 Bacteria 12309
81 Ga0207695_10104488 3300025913 Bacteria 2821
82 Ga0207695_10640270 3300025913 Bacteria 944
83 Ga0207671_10001769 3300025914 Bacteria 24275
84 Ga0207662_10017752 3300025918 Bacteria 4028
85 Ga0207662_10028258 3300025918 Bacteria 3241
86 Ga0207652_10009294 3300025921 Bacteria 7903
87 Ga0207652_10016551 3300025921 Bacteria 6022
88 Ga0207652_10029406 3300025921 Bacteria 4594
89 Ga0207646_10274091 3300025922 Bacteria 1525
90 Ga0207681_10010797 3300025923 Bacteria 5607
91 Ga0207694_10021288 3300025924 Bacteria 4913
92 Ga0207694_10305105 3300025924 Bacteria 1311
93 Ga0207650_10161882 3300025925 Unclassified 1773
94 Ga0207644_10063858 3300025931 Bacteria 2675
95 Ga0207690_10445407 3300025932 Bacteria 1040
96 Ga0207706_10048475 3300025933 Bacteria 3757
97 Ga0207670_10000004 3300025936 Bacteria 707262
98 Ga0207670_10006759 3300025936 Bacteria 6375
99 Ga0207670_10063952 3300025936 Bacteria 2520
100 Ga0207669_10047564 3300025937 Bacteria 2542
101 Ga0207691_10054393 3300025940 Bacteria 3651
102 Ga0207691_10061379 3300025940 Bacteria 3415
103 Ga0207691_10439616 3300025940 Unclassified 1111
104 Ga0207689_10263986 3300025942 Bacteria 1425
105 Ga0207661_10021558 3300025944 Bacteria 4829
106 Ga0207661_10031389 3300025944 Bacteria 4103
107 Ga0207661_10368935 3300025944 Bacteria 1298
108 Ga0207661_10606349 3300025944 Unclassified 1005
109 Ga0207667_10205896 3300025949 Bacteria 2017
110 Ga0207667_10970157 3300025949 Bacteria 839
111 Ga0207651_10000277 3300025960 Bacteria 21979
112 Ga0207651_10018781 3300025960 Bacteria 4125
113 Ga0207658_10141886 3300025986 Bacteria 1945
114 Ga0207677_10217858 3300026023 Bacteria 1529
115 Ga0207703_10059463 3300026035 Bacteria 3121
116 Ga0207708_10016645 3300026075 Bacteria 5531
117 Ga0207702_10122919 3300026078 Bacteria 2326
118 Ga0207702_10194451 3300026078 Bacteria 1876
119 Ga0207648_10004058 3300026089 Bacteria 15193
120 Ga0207674_10052480 3300026116 Bacteria 4158
121 Ga0207675_100035487 3300026118 Bacteria 4651
122 Ga0207683_10317807 3300026121 Bacteria 1426
123 Ga0207683_10514514 3300026121 Unclassified 1106
124 Ga0207698_10305022 3300026142 Bacteria 1484
125 Ga0207428_10012379 3300027907 Bacteria 7495
126 Ga0268264_10533230 3300028381 Bacteria 1149
127 Ga0265337_1017469 3300028556 Bacteria 2300
128 Ga0265337_1044235 3300028556 Bacteria 1271
129 Ga0265319_1009219 3300028563 Bacteria 4228
130 Ga0265319_1012311 3300028563 Bacteria 3464
131 Ga0265334_10013462 3300028573 Bacteria 3423
132 Ga0265334_10043241 3300028573 Unclassified 1753
133 Ga0265318_10000074 3300028577 Bacteria 95383
134 Ga0265318_10000224 3300028577 Bacteria 48801
135 Ga0265323_10011862 3300028653 Bacteria 3505
136 Ga0265322_10051170 3300028654 Unclassified 1172
137 Ga0265338_10004742 3300028800 Bacteria 18187
138 Ga0265338_10014891 3300028800 Bacteria 8601
139 Ga0265338_10263970 3300028800 Bacteria 1264
140 Ga0265324_10000126 3300029957 Bacteria 60652
141 Ga0265324_10050485 3300029957 Unclassified 1430
142 Ga0265330_10000063 3300031235 Bacteria 93489
143 Ga0265330_10001256 3300031235 Bacteria 14851
144 Ga0265330_10002874 3300031235 Bacteria 9202
145 Ga0265330_10004727 3300031235 Bacteria 6878
146 Ga0265332_10000180 3300031238 Bacteria 52220
147 Ga0265332_10000354 3300031238 Bacteria 34321
148 Ga0265332_10121407 3300031238 Bacteria 1097
149 Ga0265328_10000328 3300031239 Bacteria 22160
150 Ga0265328_10000736 3300031239 Bacteria 15190
151 Ga0265328_10005965 3300031239 Bacteria 5186
152 Ga0265320_10000016 3300031240 Bacteria 197556
153 Ga0265320_10001625 3300031240 Bacteria 16077
154 Ga0265320_10001711 3300031240 Bacteria 15588
155 Ga0265320_10230232 3300031240 Unclassified 824
156 Ga0265325_10002070 3300031241 Bacteria 13747
157 Ga0265325_10003054 3300031241 Bacteria 11069
158 Ga0265325_10140277 3300031241 Bacteria 1150
159 Ga0265325_10154726 3300031241 Unclassified 1082
160 Ga0265329_10000070 3300031242 Bacteria 45588
161 Ga0265329_10013787 3300031242 Bacteria 2869
162 Ga0265340_10000164 3300031247 Bacteria 33628
163 Ga0265340_10118462 3300031247 Bacteria 1219
164 Ga0265339_10000001 3300031249 Bacteria 613713
165 Ga0265339_10007809 3300031249 Bacteria 6868
166 Ga0265339_10008726 3300031249 Bacteria 6426
167 Ga0265339_10012952 3300031249 Bacteria 5070
168 Ga0265339_10055663 3300031249 Bacteria 2144
169 Ga0265331_10000010 3300031250 Bacteria 312076
170 Ga0265331_10000375 3300031250 Bacteria 46599
171 Ga0265331_10008982 3300031250 Bacteria 5647
172 Ga0265316_10000698 3300031344 Bacteria 37359
173 Ga0265316_10001232 3300031344 Bacteria 27522
174 Ga0265316_10001453 3300031344 Bacteria 25436
175 Ga0265316_10002211 3300031344 Bacteria 20448
176 Ga0265316_10143639 3300031344 Bacteria 1791
177 Ga0265313_10002473 3300031595 Bacteria 15929
178 Ga0265313_10005208 3300031595 Bacteria 9641
179 Ga0265313_10013426 3300031595 Bacteria 4917
180 Ga0265313_10018349 3300031595 Bacteria 3931
181 Ga0265313_10037629 3300031595 Unclassified 2416
182 Ga0265313_10066902 3300031595 Unclassified 1664
183 Ga0265313_10075687 3300031595 Bacteria 1540
184 Ga0265313_10115734 3300031595 Bacteria 1174
185 Ga0265314_10000015 3300031711 Bacteria 397180
186 Ga0265314_10000035 3300031711 Bacteria 240629
187 Ga0265314_10003104 3300031711 Bacteria 16349
188 Ga0265314_10004177 3300031711 Bacteria 13575
189 Ga0265314_10004868 3300031711 Bacteria 12272
190 Ga0265314_10014118 3300031711 Bacteria 6412
191 Ga0265342_10000128 3300031712 Bacteria 84420
192 Ga0265342_10000301 3300031712 Bacteria 56116
193 Ga0265342_10000368 3300031712 Bacteria 49570
194 Ga0265342_10001532 3300031712 Bacteria 21380
195 Ga0265342_10002819 3300031712 Bacteria 14692
196 Ga0265342_10004842 3300031712 Bacteria 10433
197 Ga0265342_10009675 3300031712 Bacteria 6761
198 Ga0265342_10010265 3300031712 Bacteria 6520
199 Ga0373950_0000020 3300034818 Bacteria 209621
200 Ga0373950_0000120 3300034818 Bacteria 13817
201 Ga0373936_0012281 3300035113 Bacteria 3256
202 Ga0373943_0000835 3300035170 Bacteria 13580
203 Ga0373955_0172762 3300035172 Bacteria 1280
204 Ga0373927_0222091 3300035695 Unclassified 1241
205 Ga0373933_0000141 3300035724 Bacteria 46355
206 Ga0373933_0028591 3300035724 Bacteria 3218
207 Ga0373933_0052390 3300035724 Bacteria 2442
208 Ga0373937_0043596 3300036401 Bacteria 4096
209 Ga0373937_0090196 3300036401 Bacteria 2839
210 Ga0373937_0413105 3300036401 Bacteria 1280
211 Ga0373925_0101594 3300037068 Bacteria 2211
212 Ga0436365_1595348 3300039437 Bacteria 2110
213 Ga0451577_0127745 3300042876 Bacteria 2279
214 Ga0451577_0858330 3300042876 Unclassified 819
215 Ga0453684_0000116 3300044712 Bacteria 352304
216 Ga0453684_0038912 3300044712 Bacteria 6489
217 Ga0451576_0736300 3300045051 Bacteria 1036
218 Ga0495630_0253538 3300046517 Bacteria 1344
219 Ga0495586_0058446 3300046535 Bacteria 2094
220 Ga0495634_0000959 3300046642 Bacteria 27292
221 Ga0495657_0047158 3300046675 Bacteria 2915
222 Ga0495674_0004069 3300047319 Bacteria 14143
223 Ga0496100_0012060 3300048903 Bacteria 4943
224 Ga0496100_0220152 3300048903 Unclassified 1393
225 Ga0496101_0049989 3300048904 Bacteria 3008
226 Ga0496101_0483577 3300048904 Bacteria 978
227 Ga0496104_0022714 3300048907 Bacteria 5762
228 Ga0496104_0313780 3300048907 Bacteria 1481
229 Ga0496105_0082155 3300048908 Unclassified 2661
230 Ga0496105_0182495 3300048908 Bacteria 1718
231 Ga0496106_0022977 3300048909 Bacteria 4632
232 Ga0496106_0174104 3300048909 Bacteria 1707
233 Ga0496112_0555271 3300048915 Bacteria 1082
234 Ga0496114_0000271 3300048917 Bacteria 37792
235 Ga0496114_0001350 3300048917 Bacteria 18593
236 Ga0496114_0206933 3300048917 Unclassified 1720
237 Ga0496114_0343815 3300048917 Bacteria 1319
238 Ga0496115_0378204 3300048918 Bacteria 1152
239 Ga0501034_0000026 3300049571 Bacteria 261125
240 Ga0501036_0041269 3300049572 Bacteria 3904
241 Ga0501043_0002163 3300049579 Bacteria 16764
242 Ga0501046_0008175 3300049580 Bacteria 9140
243 Ga0501047_0000017 3300049581 Bacteria 276932
244 Ga0501048_0000793 3300049582 Bacteria 23177
245 Ga0501067_0000019 3300049583 Bacteria 100678
246 Ga0501067_0026920 3300049583 Bacteria 3184
247 Ga0501068_0006810 3300049584 Bacteria 6320
248 Ga0501069_0008095 3300049585 Bacteria 5522
249 Ga0501069_0034575 3300049585 Bacteria 2783
250 Ga0501070_0000082 3300049586 Bacteria 81256
251 Ga0501070_0000316 3300049586 Bacteria 43781
252 Ga0501071_0271914 3300049587 Bacteria 1281
253 Ga0501072_0000112 3300049588 Bacteria 59894
254 Ga0501072_0452092 3300049588 Bacteria 1017
255 Ga0501073_0000165 3300049589 Bacteria 43269
256 Ga0501073_0000286 3300049589 Bacteria 33311
257 Ga0501073_0038635 3300049589 Bacteria 3384
258 Ga0501073_0062278 3300049589 Bacteria 2602
259 Ga0501073_0097193 3300049589 Bacteria 2045
260 Ga0501074_0003004 3300049590 Bacteria 11869
261 Ga0501074_0041565 3300049590 Unclassified 3328
262 Ga0501074_0082352 3300049590 Bacteria 2308
263 Ga0501079_0000114 3300049741 Bacteria 41836
264 Ga0501079_0485006 3300049741 Bacteria 972
265 Ga0501080_0001429 3300049742 Bacteria 20060
266 Ga0501080_0022492 3300049742 Bacteria 5840
267 Ga0501080_0048796 3300049742 Bacteria 3939
268 Ga0501080_0155693 3300049742 Bacteria 2111
269 Ga0501080_0194035 3300049742 Bacteria 1865
270 Ga0501083_0004946 3300049744 Bacteria 9438
271 Ga0501083_0022287 3300049744 Bacteria 4395
272 Ga0501083_0161350 3300049744 Bacteria 1466
273 nmdc:mga08y16_70012_c1 3300050511 Bacteria 3657
274 Ga0500555_019306 3300053103 Bacteria 1963
275 Ga0501084_0000003 3300054114 Bacteria 267909
276 Ga0501084_0275298 3300054114 Bacteria 1421
277 Ga0501082_0001029 3300060353 Bacteria 24658
278 Ga0501082_0037203 3300060353 Bacteria 4194
279 Ga0501082_0057547 3300060353 Bacteria 3349

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300035695 Ga0373927_0222091 Ga0373927_0222091_573_1226 212
2 3300005340 Ga0070689_100000005 Ga0070689_100000005131 215
3 3300025936 Ga0207670_10000004 Ga0207670_10000004329 215
4 3300005535 Ga0070684_100391155 Ga0070684_1003911552 217
5 3300042876 Ga0451577_0127745 Ga0451577_0127745_512_1210 224
6 3300044712 Ga0453684_0000116 Ga0453684_0000116_7738_8427 224
7 3300044712 Ga0453684_0038912 Ga0453684_0038912_5200_5898 224
8 3300005617 Ga0068859_100607786 Ga0068859_1006077862 225
9 3300006931 Ga0097620_100607873 Ga0097620_1006078732 225
10 3300025944 Ga0207661_10031389 Ga0207661_100313895 225
11 3300026023 Ga0207677_10217858 Ga0207677_102178583 225
12 3300028556 Ga0265337_1044235 Ga0265337_10442352 225
13 3300029957 Ga0265324_10000126 Ga0265324_1000012628 225
14 3300029957 Ga0265324_10050485 Ga0265324_100504852 225
15 3300031241 Ga0265325_10003054 Ga0265325_100030543 225
16 3300031249 Ga0265339_10000001 Ga0265339_10000001314 225
17 3300031595 Ga0265313_10002473 Ga0265313_1000247310 225
18 3300031595 Ga0265313_10075687 Ga0265313_100756872 225
19 3300049571 Ga0501034_0000026 Ga0501034_0000026_142942_143667 225
20 3300049572 Ga0501036_0041269 Ga0501036_0041269_908_1633 225
21 3300049579 Ga0501043_0002163 Ga0501043_0002163_3088_3813 225
22 3300049580 Ga0501046_0008175 Ga0501046_0008175_4288_5013 225
23 3300049581 Ga0501047_0000017 Ga0501047_0000017_158762_159487 225
24 3300049582 Ga0501048_0000793 Ga0501048_0000793_15413_16138 225
25 3300049584 Ga0501068_0006810 Ga0501068_0006810_2027_2752 225
26 3300049586 Ga0501070_0000316 Ga0501070_0000316_15658_16383 225
27 3300049588 Ga0501072_0000112 Ga0501072_0000112_25862_26587 225
28 3300049590 Ga0501074_0003004 Ga0501074_0003004_3088_3813 225
29 3300049741 Ga0501079_0000114 Ga0501079_0000114_5959_6684 225
30 3300049742 Ga0501080_0194035 Ga0501080_0194035_200_925 225
31 3300049744 Ga0501083_0161350 Ga0501083_0161350_200_925 225
32 3300054114 Ga0501084_0000003 Ga0501084_0000003_117185_117910 225
33 3300060353 Ga0501082_0001029 Ga0501082_0001029_15961_16686 225
34 3300005329 Ga0070683_100723125 Ga0070683_1007231251 226
35 3300025944 Ga0207661_10606349 Ga0207661_106063492 226
36 3300028556 Ga0265337_1017469 Ga0265337_10174692 226
37 3300028800 Ga0265338_10004742 Ga0265338_1000474212 226
38 3300031235 Ga0265330_10004727 Ga0265330_100047272 226
39 3300031241 Ga0265325_10002070 Ga0265325_1000207010 226
40 3300031247 Ga0265340_10000164 Ga0265340_100001644 226
41 3300031250 Ga0265331_10008982 Ga0265331_100089824 226
42 3300031595 Ga0265313_10115734 Ga0265313_101157342 226
43 3300031711 Ga0265314_10000015 Ga0265314_10000015190 226
44 3300031712 Ga0265342_10004842 Ga0265342_100048424 226
45 3300028653 Ga0265323_10011862 Ga0265323_100118623 227
46 3300028654 Ga0265322_10051170 Ga0265322_100511702 227
47 3300031235 Ga0265330_10002874 Ga0265330_100028747 227
48 3300031242 Ga0265329_10000070 Ga0265329_100000709 227
49 3300031249 Ga0265339_10007809 Ga0265339_100078094 227
50 3300031344 Ga0265316_10000698 Ga0265316_1000069826 227
51 3300031712 Ga0265342_10000301 Ga0265342_1000030115 227
52 3300031712 Ga0265342_10009675 Ga0265342_100096754 227
53 3300042876 Ga0451577_0858330 Ga0451577_0858330_86_784 227
54 3300025944 Ga0207661_10021558 Ga0207661_100215583 228
55 3300005328 Ga0070676_10029254 Ga0070676_100292542 230
56 3300005330 Ga0070690_100018544 Ga0070690_1000185444 230
57 3300005331 Ga0070670_100404819 Ga0070670_1004048191 230
58 3300005335 Ga0070666_10042533 Ga0070666_100425331 230
59 3300005338 Ga0068868_100251433 Ga0068868_1002514332 230
60 3300005340 Ga0070689_100054727 Ga0070689_1000547272 230
61 3300005343 Ga0070687_100037515 Ga0070687_1000375153 230
62 3300005343 Ga0070687_100082992 Ga0070687_1000829923 230
63 3300005353 Ga0070669_100086514 Ga0070669_1000865144 230
64 3300005356 Ga0070674_100033578 Ga0070674_1000335782 230
65 3300005364 Ga0070673_100076057 Ga0070673_1000760572 230
66 3300005364 Ga0070673_100615248 Ga0070673_1006152482 230
67 3300005365 Ga0070688_100150215 Ga0070688_1001502152 230
68 3300005366 Ga0070659_100732112 Ga0070659_1007321121 230
69 3300005367 Ga0070667_100341340 Ga0070667_1003413402 230
70 3300005438 Ga0070701_10149992 Ga0070701_101499921 230
71 3300005441 Ga0070700_100006457 Ga0070700_1000064574 230
72 3300005456 Ga0070678_100106955 Ga0070678_1001069553 230
73 3300005457 Ga0070662_100156732 Ga0070662_1001567323 230
74 3300005459 Ga0068867_100058584 Ga0068867_1000585844 230
75 3300005535 Ga0070684_100074489 Ga0070684_1000744893 230
76 3300005535 Ga0070684_100296586 Ga0070684_1002965861 230
77 3300005543 Ga0070672_100034055 Ga0070672_1000340552 230
78 3300005543 Ga0070672_100421392 Ga0070672_1004213922 230
79 3300005544 Ga0070686_100000905 Ga0070686_1000009054 230
80 3300005544 Ga0070686_100008360 Ga0070686_1000083607 230
81 3300005563 Ga0068855_101062096 Ga0068855_1010620961 230
82 3300005614 Ga0068856_100278633 Ga0068856_1002786333 230
83 3300005615 Ga0070702_100274203 Ga0070702_1002742032 230
84 3300005718 Ga0068866_10074322 Ga0068866_100743223 230
85 3300005843 Ga0068860_100353026 Ga0068860_1003530262 230
86 3300005844 Ga0068862_100713093 Ga0068862_1007130931 230
87 3300006881 Ga0068865_100098079 Ga0068865_1000980793 230
88 3300009094 Ga0111539_10001200 Ga0111539_1000120017 230
89 3300013297 Ga0157378_10059610 Ga0157378_100596103 230
90 3300025271 Ga0207666_1006044 Ga0207666_10060443 230
91 3300025903 Ga0207680_10070919 Ga0207680_100709192 230
92 3300025907 Ga0207645_10029134 Ga0207645_100291342 230
93 3300025918 Ga0207662_10017752 Ga0207662_100177524 230
94 3300025918 Ga0207662_10028258 Ga0207662_100282583 230
95 3300025923 Ga0207681_10010797 Ga0207681_100107974 230
96 3300025925 Ga0207650_10161882 Ga0207650_101618823 230
97 3300025933 Ga0207706_10048475 Ga0207706_100484753 230
98 3300025936 Ga0207670_10063952 Ga0207670_100639522 230
99 3300025937 Ga0207669_10047564 Ga0207669_100475643 230
100 3300025940 Ga0207691_10061379 Ga0207691_100613795 230
101 3300025940 Ga0207691_10439616 Ga0207691_104396162 230
102 3300025944 Ga0207661_10368935 Ga0207661_103689352 230
103 3300025949 Ga0207667_10970157 Ga0207667_109701571 230
104 3300025960 Ga0207651_10018781 Ga0207651_100187813 230
105 3300026035 Ga0207703_10059463 Ga0207703_100594633 230
106 3300026075 Ga0207708_10016645 Ga0207708_100166456 230
107 3300026078 Ga0207702_10122919 Ga0207702_101229192 230
108 3300026089 Ga0207648_10004058 Ga0207648_1000405816 230
109 3300026118 Ga0207675_100035487 Ga0207675_1000354872 230
110 3300026121 Ga0207683_10317807 Ga0207683_103178072 230
111 3300027907 Ga0207428_10012379 Ga0207428_100123794 230
112 3300028381 Ga0268264_10533230 Ga0268264_105332302 230
113 3300035170 Ga0373943_0000835 Ga0373943_0000835_1085_1792 230
114 3300039437 Ga0436365_1595348 Ga0436365_1595348_558_1262 230
115 3300045051 Ga0451576_0736300 Ga0451576_0736300_53_760 230
116 3300048903 Ga0496100_0012060 Ga0496100_0012060_2719_3423 230
117 3300048904 Ga0496101_0049989 Ga0496101_0049989_149_853 230
118 3300048904 Ga0496101_0483577 Ga0496101_0483577_91_798 230
119 3300048909 Ga0496106_0022977 Ga0496106_0022977_3545_4249 230
120 3300048915 Ga0496112_0555271 Ga0496112_0555271_248_955 230
121 3300048917 Ga0496114_0000271 Ga0496114_0000271_8431_9135 230
122 3300048917 Ga0496114_0343815 Ga0496114_0343815_300_1007 230
123 3300049583 Ga0501067_0026920 Ga0501067_0026920_30_734 230
124 3300049589 Ga0501073_0062278 Ga0501073_0062278_120_824 230
125 3300050511 nmdc:mga08y16_70012_c1 nmdc:mga08y16_70012_c1_300_1007 230
126 3300054114 Ga0501084_0275298 Ga0501084_0275298_656_1363 230
127 3300005367 Ga0070667_100414640 Ga0070667_1004146402 231
128 3300025986 Ga0207658_10141886 Ga0207658_101418862 231
129 3300037068 Ga0373925_0101594 Ga0373925_0101594_813_1520 231
130 3300014969 Ga0157376_10607308 Ga0157376_106073082 232
131 3300031240 Ga0265320_10230232 Ga0265320_102302322 232
132 3300031241 Ga0265325_10140277 Ga0265325_101402772 232
133 3300031344 Ga0265316_10001453 Ga0265316_1000145312 232
134 3300031712 Ga0265342_10010265 Ga0265342_100102654 232
135 3300035113 Ga0373936_0012281 Ga0373936_0012281_2284_2997 232
136 3300046517 Ga0495630_0253538 Ga0495630_0253538_112_825 232
137 3300046535 Ga0495586_0058446 Ga0495586_0058446_1138_1851 232
138 3300046642 Ga0495634_0000959 Ga0495634_0000959_21806_22519 232
139 3300047319 Ga0495674_0004069 Ga0495674_0004069_2089_2802 232
140 3300053103 Ga0500555_019306 Ga0500555_019306_589_1311 232
141 3300005329 Ga0070683_100538090 Ga0070683_1005380901 234
142 3300005436 Ga0070713_100258412 Ga0070713_1002584122 234
143 3300009551 Ga0105238_10192642 Ga0105238_101926422 234
144 3300013296 Ga0157374_10199035 Ga0157374_101990353 234
145 3300025913 Ga0207695_10640270 Ga0207695_106402702 234
146 3300025924 Ga0207694_10305105 Ga0207694_103051051 234
147 3300028563 Ga0265319_1009219 Ga0265319_10092193 234
148 3300031241 Ga0265325_10154726 Ga0265325_101547261 234
149 3300031595 Ga0265313_10066902 Ga0265313_100669023 234
150 3300035172 Ga0373955_0172762 Ga0373955_0172762_89_808 234
151 3300035724 Ga0373933_0028591 Ga0373933_0028591_210_929 234
152 3300035724 Ga0373933_0052390 Ga0373933_0052390_1640_2359 234
153 3300048903 Ga0496100_0220152 Ga0496100_0220152_453_1172 234
154 3300048907 Ga0496104_0022714 Ga0496104_0022714_4150_4869 234
155 3300048907 Ga0496104_0313780 Ga0496104_0313780_571_1290 234
156 3300048908 Ga0496105_0082155 Ga0496105_0082155_588_1307 234
157 3300048908 Ga0496105_0182495 Ga0496105_0182495_686_1405 234
158 3300048909 Ga0496106_0174104 Ga0496106_0174104_332_1051 234
159 3300048917 Ga0496114_0001350 Ga0496114_0001350_1821_2540 234
160 3300048918 Ga0496115_0378204 Ga0496115_0378204_55_777 234
161 3300005330 Ga0070690_100220099 Ga0070690_1002200992 235
162 3300005331 Ga0070670_100029991 Ga0070670_1000299912 235
163 3300005340 Ga0070689_100012638 Ga0070689_1000126383 235
164 3300005343 Ga0070687_100092991 Ga0070687_1000929913 235
165 3300005354 Ga0070675_100089179 Ga0070675_1000891793 235
166 3300005355 Ga0070671_100268572 Ga0070671_1002685722 235
167 3300005364 Ga0070673_100002660 Ga0070673_1000026603 235
168 3300005365 Ga0070688_100121267 Ga0070688_1001212672 235
169 3300005543 Ga0070672_100024801 Ga0070672_1000248012 235
170 3300014325 Ga0163163_10732718 Ga0163163_107327182 235
171 3300025931 Ga0207644_10063858 Ga0207644_100638582 235
172 3300025936 Ga0207670_10006759 Ga0207670_100067597 235
173 3300025940 Ga0207691_10054393 Ga0207691_100543933 235
174 3300025942 Ga0207689_10263986 Ga0207689_102639863 235
175 3300025960 Ga0207651_10000277 Ga0207651_1000027718 235
176 3300026121 Ga0207683_10514514 Ga0207683_105145142 235
177 3300028800 Ga0265338_10014891 Ga0265338_100148913 235
178 3300031239 Ga0265328_10005965 Ga0265328_100059654 235
179 3300031240 Ga0265320_10001625 Ga0265320_100016257 235
180 3300031249 Ga0265339_10012952 Ga0265339_100129522 235
181 3300031249 Ga0265339_10055663 Ga0265339_100556633 235
182 3300031344 Ga0265316_10143639 Ga0265316_101436392 235
183 3300031711 Ga0265314_10003104 Ga0265314_1000310415 235
184 3300031711 Ga0265314_10014118 Ga0265314_100141186 235
185 3300031712 Ga0265342_10002819 Ga0265342_100028195 235
186 3300034818 Ga0373950_0000020 Ga0373950_0000020_40945_41670 235
187 3300034818 Ga0373950_0000120 Ga0373950_0000120_6154_6879 235
188 3300035724 Ga0373933_0000141 Ga0373933_0000141_42350_43075 235
189 3300036401 Ga0373937_0043596 Ga0373937_0043596_548_1273 235
190 3300036401 Ga0373937_0090196 Ga0373937_0090196_1677_2402 235
191 3300036401 Ga0373937_0413105 Ga0373937_0413105_436_1161 235
192 3300046675 Ga0495657_0047158 Ga0495657_0047158_612_1337 235
193 3300048917 Ga0496114_0206933 Ga0496114_0206933_508_1233 235
194 3300049583 Ga0501067_0000019 Ga0501067_0000019_61049_61774 235
195 3300049585 Ga0501069_0008095 Ga0501069_0008095_3220_3945 235
196 3300049585 Ga0501069_0034575 Ga0501069_0034575_1836_2561 235
197 3300049586 Ga0501070_0000082 Ga0501070_0000082_2214_2939 235
198 3300049587 Ga0501071_0271914 Ga0501071_0271914_142_867 235
199 3300049589 Ga0501073_0000165 Ga0501073_0000165_30902_31627 235
200 3300049589 Ga0501073_0038635 Ga0501073_0038635_259_984 235
201 3300049589 Ga0501073_0097193 Ga0501073_0097193_862_1587 235
202 3300049590 Ga0501074_0041565 Ga0501074_0041565_2108_2833 235
203 3300049590 Ga0501074_0082352 Ga0501074_0082352_967_1692 235
204 3300049741 Ga0501079_0485006 Ga0501079_0485006_32_757 235
205 3300049742 Ga0501080_0001429 Ga0501080_0001429_2358_3083 235
206 3300049742 Ga0501080_0022492 Ga0501080_0022492_1329_2054 235
207 3300049742 Ga0501080_0048796 Ga0501080_0048796_1999_2724 235
208 3300049742 Ga0501080_0155693 Ga0501080_0155693_1092_1817 235
209 3300049744 Ga0501083_0004946 Ga0501083_0004946_3827_4552 235
210 3300049744 Ga0501083_0022287 Ga0501083_0022287_2435_3160 235
211 3300060353 Ga0501082_0037203 Ga0501082_0037203_2283_3008 235
212 3300060353 Ga0501082_0057547 Ga0501082_0057547_1647_2372 235
213 3300005614 Ga0068856_100070004 Ga0068856_1000700045 236
214 3300005530 Ga0070679_100015902 Ga0070679_1000159025 237
215 3300005563 Ga0068855_100016028 Ga0068855_1000160288 237
216 3300025921 Ga0207652_10029406 Ga0207652_100294065 237
217 3300025949 Ga0207667_10205896 Ga0207667_102058961 237
218 3300026142 Ga0207698_10305022 Ga0207698_103050222 237
219 3300003323 rootH1_10107564 rootH1_101075643 238
220 3300005336 Ga0070680_100021724 Ga0070680_1000217246 238
221 3300005366 Ga0070659_100048958 Ga0070659_1000489583 238
222 3300005530 Ga0070679_100033934 Ga0070679_1000339343 238
223 3300005530 Ga0070679_100112338 Ga0070679_1001123383 238
224 3300005614 Ga0068856_100154566 Ga0068856_1001545663 238
225 3300009093 Ga0105240_10011515 Ga0105240_100115152 238
226 3300009093 Ga0105240_10225492 Ga0105240_102254922 238
227 3300009545 Ga0105237_10006159 Ga0105237_100061594 238
228 3300009551 Ga0105238_10004832 Ga0105238_1000483212 238
229 3300025909 Ga0207705_10030267 Ga0207705_100302673 238
230 3300025913 Ga0207695_10009129 Ga0207695_100091292 238
231 3300025913 Ga0207695_10104488 Ga0207695_101044882 238
232 3300025914 Ga0207671_10001769 Ga0207671_1000176914 238
233 3300025921 Ga0207652_10009294 Ga0207652_100092946 238
234 3300025921 Ga0207652_10016551 Ga0207652_100165512 238
235 3300025924 Ga0207694_10021288 Ga0207694_100212882 238
236 3300025932 Ga0207690_10445407 Ga0207690_104454072 238
237 3300026078 Ga0207702_10194451 Ga0207702_101944512 238
238 3300026116 Ga0207674_10052480 Ga0207674_100524803 238
239 3300028800 Ga0265338_10263970 Ga0265338_102639702 238
240 3300031238 Ga0265332_10121407 Ga0265332_101214072 238
241 3300031249 Ga0265339_10008726 Ga0265339_100087263 238
242 3300031595 Ga0265313_10013426 Ga0265313_100134266 238
243 3300031595 Ga0265313_10018349 Ga0265313_100183495 238
244 3300031711 Ga0265314_10004868 Ga0265314_100048687 238
245 3300031712 Ga0265342_10000128 Ga0265342_1000012816 238
246 3300049588 Ga0501072_0452092 Ga0501072_0452092_150_899 238
247 3300049589 Ga0501073_0000286 Ga0501073_0000286_31356_32099 238
248 3300005468 Ga0070707_100217639 Ga0070707_1002176392 239
249 3300005719 Ga0068861_100053938 Ga0068861_1000539382 239
250 3300009174 Ga0105241_10253649 Ga0105241_102536492 239
251 3300025911 Ga0207654_10121459 Ga0207654_101214592 239
252 3300025922 Ga0207646_10274091 Ga0207646_102740912 239
253 3300031247 Ga0265340_10118462 Ga0265340_101184622 239
254 3300028573 Ga0265334_10043241 Ga0265334_100432412 242
255 3300028577 Ga0265318_10000074 Ga0265318_1000007427 242
256 3300031235 Ga0265330_10000063 Ga0265330_1000006326 242
257 3300031238 Ga0265332_10000180 Ga0265332_1000018023 242
258 3300031239 Ga0265328_10000736 Ga0265328_100007363 242
259 3300031240 Ga0265320_10000016 Ga0265320_10000016120 242
260 3300031242 Ga0265329_10013787 Ga0265329_100137873 242
261 3300031250 Ga0265331_10000010 Ga0265331_10000010120 242
262 3300031344 Ga0265316_10001232 Ga0265316_100012328 242
263 3300031595 Ga0265313_10037629 Ga0265313_100376293 242
264 3300031711 Ga0265314_10000035 Ga0265314_10000035147 242
265 3300031712 Ga0265342_10001532 Ga0265342_100015322 242
266 3300028563 Ga0265319_1012311 Ga0265319_10123113 244
267 3300028573 Ga0265334_10013462 Ga0265334_100134623 244
268 3300028577 Ga0265318_10000224 Ga0265318_100002243 244
269 3300031235 Ga0265330_10001256 Ga0265330_1000125612 244
270 3300031238 Ga0265332_10000354 Ga0265332_1000035423 244
271 3300031239 Ga0265328_10000328 Ga0265328_100003287 244
272 3300031240 Ga0265320_10001711 Ga0265320_100017117 244
273 3300031250 Ga0265331_10000375 Ga0265331_1000037523 244
274 3300031344 Ga0265316_10002211 Ga0265316_1000221111 244
275 3300031595 Ga0265313_10005208 Ga0265313_100052086 244
276 3300031711 Ga0265314_10004177 Ga0265314_1000417711 244
277 3300031712 Ga0265342_10000368 Ga0265342_1000036825 244
278 3300003320 rootH2_10184867 rootH2_101848672 247
279 3300003323 rootH1_10019037 rootH1_100190373 247

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01479

S4

S4 domain

32

77

0.91

PF00849

PseudoU_synth_2

RNA pseudouridylate synthase

94

234

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
8d8k-assembly1.cif.gz_D yeast mitochondrial small subunit assembly intermediate (state 2) 0.8557 8 59
3jbn-assembly1.cif.gz_E cryo-electron microscopy reconstruction of the plasmodium falciparum 80s ribosome bound to p-trna 0.85 8 48
8d8l-assembly1.cif.gz_D yeast mitochondrial small subunit assembly intermediate (state 3) 0.8464 8 60
6ywy-assembly1.cif.gz_DD the structure of the mitoribosome from neurospora crassa with bound trna at the p-site 0.8407 8 59
7mq9-assembly1.cif.gz_LZ cryo-em structure of the human ssu processome, state pre-a1* 0.8393 8 48
ID Description Score Start End Superfamily
1vioB02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.9157 69 136 3.30.70.580
1kslA01 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.8957 8 64 3.10.290.10
af_Q2FY78_59_131_3.30.70.580 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Pseudouridine synthase I, catalytic domain, N-terminal subdomain 0.8866 66 136 3.30.70.580
af_P56799_3_142_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.8742 8 49 1.20.1250.20
af_A0A144A2N8_107_181_3.10.290.10 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.8737 8 49 3.10.290.10
ID Description Score Start End GO Terms
AF-A0A1I1X3W8-F1-model_v4 Ribosomal small subunit pseudouridine synthase A 0.9627 7 242 GO:0001522
GO:0003723
GO:0006396
GO:0009982
GO:0140098
AF-A0A832E1T2-F1-model_v4 deleted 0.9391 2 242
AF-A6FY13-F1-model_v4 Ribosomal large subunit pseudouridine synthase B 0.9384 10 244 GO:0001522
GO:0003723
GO:0006396
GO:0009982
GO:0140098
AF-A6FY13-F1-model_v4 Ribosomal large subunit pseudouridine synthase B 0.9231 10 244 GO:0001522
GO:0003723
GO:0006396
GO:0009982
GO:0140098
AF-A0A3M2A461-F1-model_v4 rRNA pseudouridine synthase 0.9169 1 245 GO:0001522
GO:0003723
GO:0006396
GO:0009982
GO:0140098

Feature Viewer

pLDDT pTM Quality
94.38 0.89 High
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Predicted Structure (AlphaFold2)

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