F380509

General Info

Members Datasets Scaffolds Average Seq Length
275 187 550 339

Family's Representative Sequence

Representative Sequence 3300028786|Ga0307517_10120061|Ga0307517_101200612
Length 345
Sequence MMAVPPGETPSPPARRGRRPGRGVSMADVARLAGVSSQTVSRVSTGHPSVVDSTRAQVLAAMQQLGYRPNSAARALKLGEFRTIGVILFTLATTGNSRTVEAIADHAAQEGYAITLIPVAVPTQDGVLGAFTRLGELAVDGIIVIMEVHLLDAATVTLPPGVQVVVVDSDAGARQAVQHLLDLGHRSVWHVTGPAESFASERRAKAWRDTLRAAGRRVPAVQRGDWSAESGYRAGLVLARDPECTAVFAANDQMALGLLRAFHEHGRTIPGDVSIVGFDDIPDAASYLPPLTTVHQDFAEVGRRCVQGLLRQLRHEPHGPGTALVPTRLVIRQSTAPPRRPGPAN

Samples

Sample ID Description Type Environment
1 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
5 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
6 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
7 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
8 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
9 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
10 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
11 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
12 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
13 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
14 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
15 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
16 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
17 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
18 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
19 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
20 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
21 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
22 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
24 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
25 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
26 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
27 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
28 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
29 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
30 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
31 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
32 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
33 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
34 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
35 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
36 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
37 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
38 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
39 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
40 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
41 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
42 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
43 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
44 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
45 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
46 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
47 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
48 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
49 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
50 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
51 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
52 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
53 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
54 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
55 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
56 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
57 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
58 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
59 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
60 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
61 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
62 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
63 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
64 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
65 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
66 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
67 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
68 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
69 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
70 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
71 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
72 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
73 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
74 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
75 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
76 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
77 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
78 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
79 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
80 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
81 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
82 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
83 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
84 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
85 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
86 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
87 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
88 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
89 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
90 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
91 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
92 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
93 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
94 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
95 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
96 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
97 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
98 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
99 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
100 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
101 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
102 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
103 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
104 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
105 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
106 3300049127 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_A_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
107 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
108 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
111 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
121 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
122 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
123 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
124 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
125 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
126 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
127 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
128 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
129 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
130 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
131 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
132 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
133 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
134 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
135 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
136 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
137 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
138 3300053091 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 endosphere Metagenome Endosphere
139 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
140 3300053095 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL3_72_14 endosphere Metagenome Endosphere
141 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
142 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
143 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
144 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
145 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
146 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
147 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
148 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
149 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
150 2582581314 Streptomyces mirabilis YR139 Isolate Rhizosphere
151 2643221647 Streptomyces sp. Root369 Isolate Unclassified
152 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
153 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
154 2784746768 Streptomyces griseorubiginosus SAI-142 Isolate Unclassified
155 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
156 2799112218 Motilibacter rhizosphaerae DSM 45622 Isolate Rhizosphere
157 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
158 2808606448 Streptomyces sp. 193411 Isolate Unclassified
159 2832004796 Micromonospora endophytica JCM 18317 Isolate Unclassified
160 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
161 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
162 2862705112 Streptomyces triticirhizae NEAU-YY642 Isolate Rhizosphere
163 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
164 2867507094 Micromonospora zingiberis PLAI 1-1 Isolate Unclassified
165 2868088558 Phytoactinopolyspora endophytica EGI 60009 Isolate Unclassified
166 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
167 2887478801 Catellatospora paridis NEAU-CL2 Isolate Rhizosphere
168 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
169 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
170 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
171 2919391150 Arthrobacter ipis 2973 Isolate Unclassified
172 2932431166 Cellulosimicrobium sp. 4261 Isolate Rhizosphere
173 2945956166 Arthrobacter globiformus W2I3 Isolate Rhizosphere
174 2954380949 Streptomyces ciscaucasicus W1I15 Isolate Rhizosphere
175 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
176 2954691527 Streptomyces sp. SAI-127 Isolate Rhizosphere
177 2954701450 Streptomyces sp. SAI-144 Isolate Rhizosphere
178 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
179 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
180 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
181 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
182 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
183 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
184 8001781756 Catellatospora tritici NEAU-YM18 Isolate Rhizosphere
185 8008485437 Streptomyces mimosae 3MP-10 Isolate Unclassified
186 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
187 8025524527 Streptomyces sp. 3MP-14 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 84.73
Metatranscriptomes 0.73
Isolates 14.55

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.27
Nodule 0
Rhizoplane 1.09
Rhizosphere 74.91
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307517_10120061 3300028786 Bacteria 1948
2 JGI24737J22298_10021728 3300001990 Bacteria 2043
3 Ga0070683_100026004 3300005329 Bacteria 5264
4 Ga0070668_100000291 3300005347 Bacteria 32997
5 Ga0070684_100004559 3300005535 Bacteria 10557
6 Ga0068862_100018422 3300005844 Bacteria 5815
7 Ga0070717_10230767 3300006028 Bacteria 1630
8 Ga0075365_10042352 3300006038 Bacteria 2977
9 Ga0075363_100000519 3300006048 Bacteria 12390
10 Ga0075428_100000360 3300006844 Bacteria 45214
11 Ga0105246_10217459 3300011119 Bacteria 1495
12 Ga0157369_10172503 3300013105 Bacteria 2278
13 Ga0182008_10002020 3300014497 Bacteria 13008
14 Ga0182007_10000293 3300015262 Bacteria 32494
15 Ga0224712_10034304 3300022467 Bacteria 1865
16 Ga0207647_10023250 3300025904 Bacteria 4103
17 Ga0207661_10049640 3300025944 Bacteria 3340
18 Ga0207668_10000882 3300025972 Bacteria 18103
19 Ga0207702_10155250 3300026078 Bacteria 2086
20 Ga0207674_10451790 3300026116 Bacteria 1242
21 Ga0209813_10029703 3300027866 Bacteria 1602
22 Ga0268266_10137122 3300028379 Bacteria 2193
23 Ga0268266_10291817 3300028379 Bacteria 1519
24 Ga0268265_10024090 3300028380 Bacteria 4301
25 Ga0265334_10002884 3300028573 Bacteria 7887
26 Ga0307517_10016099 3300028786 Bacteria 9862
27 Ga0307515_10000050 3300028794 Bacteria 275624
28 Ga0307515_10000167 3300028794 Bacteria 160820
29 Ga0307515_10013809 3300028794 Bacteria 15051
30 Ga0307515_10182214 3300028794 Bacteria 2045
31 Ga0307511_10001085 3300030521 Bacteria 28916
32 Ga0307511_10037024 3300030521 Bacteria 4224
33 Ga0307512_10017468 3300030522 Bacteria 6581
34 Ga0307513_10022313 3300031456 Bacteria 7444
35 Ga0307513_10049850 3300031456 Bacteria 4532
36 Ga0307513_10061761 3300031456 Bacteria 3964
37 Ga0307509_10030763 3300031507 Bacteria 5935
38 Ga0307509_10110282 3300031507 Bacteria 2757
39 Ga0307509_10201695 3300031507 Bacteria 1825
40 Ga0307508_10006502 3300031616 Bacteria 10991
41 Ga0307508_10021252 3300031616 Bacteria 5900
42 Ga0307508_10025546 3300031616 Bacteria 5354
43 Ga0307508_10025662 3300031616 Bacteria 5340
44 Ga0307508_10027940 3300031616 Bacteria 5105
45 Ga0307516_10003964 3300031730 Bacteria 18588
46 Ga0307516_10008923 3300031730 Bacteria 11249
47 Ga0307516_10018408 3300031730 Bacteria 7258
48 Ga0307516_10020860 3300031730 Bacteria 6762
49 Ga0307518_10034316 3300031838 Bacteria 3683
50 Ga0307409_100490827 3300031995 Bacteria 1194
51 Ga0307416_100009907 3300032002 Bacteria 6268
52 Ga0307415_100103849 3300032126 Bacteria 2092
53 Ga0307510_10003616 3300033180 Bacteria 18051
54 Ga0307510_10093140 3300033180 Bacteria 2846
55 Ga0373951_0000016 3300035091 Bacteria 66469
56 Ga0373935_0048201 3300035692 Bacteria 2697
57 Ga0439466_0017349 3300041411 Bacteria 2595
58 Ga0439432_007939 3300042006 Bacteria 3744
59 Ga0439449_0003570 3300042007 Bacteria 6044
60 Ga0439449_0026303 3300042007 Bacteria 2172
61 Ga0439462_0028363 3300042015 Bacteria 1480
62 Ga0466965_0038706 3300044683 Bacteria 2343
63 Ga0466961_0000214 3300044693 Bacteria 39036
64 Ga0466963_0000651 3300044694 Bacteria 16713
65 Ga0466971_0000079 3300044719 Bacteria 35332
66 Ga0466957_0000062 3300044842 Bacteria 40831
67 Ga0466959_0007431 3300045049 Bacteria 7686
68 Ga0466958_0000113 3300045836 Bacteria 25994
69 Ga0466967_0000163 3300045976 Bacteria 26987
70 Ga0466967_0027481 3300045976 Bacteria 4734
71 Ga0495627_056038 3300046453 Bacteria 1176
72 Ga0495592_0012547 3300046454 Bacteria 6439
73 Ga0495592_0039726 3300046454 Bacteria 3534
74 Ga0495592_0064467 3300046454 Bacteria 2685
75 Ga0495603_0007955 3300046455 Bacteria 6398
76 Ga0495629_0000729 3300046459 Bacteria 26703
77 Ga0495629_0016099 3300046459 Bacteria 5369
78 Ga0495629_0021514 3300046459 Bacteria 4602
79 Ga0495629_0041082 3300046459 Bacteria 3254
80 Ga0495638_0040207 3300046460 Bacteria 2964
81 Ga0495651_0007940 3300046462 Bacteria 8130
82 Ga0495582_0018935 3300046473 Bacteria 3767
83 Ga0495605_0009059 3300046474 Bacteria 5603
84 Ga0495662_0000151 3300046476 Bacteria 27248
85 Ga0495662_0114187 3300046476 Bacteria 1324
86 Ga0495664_0002212 3300046477 Bacteria 10409
87 Ga0495664_0068269 3300046477 Bacteria 2121
88 Ga0495594_0014989 3300046499 Bacteria 4069
89 Ga0495594_0026489 3300046499 Bacteria 3120
90 Ga0495594_0037253 3300046499 Bacteria 2653
91 Ga0495594_0097531 3300046499 Bacteria 1652
92 Ga0495607_0010980 3300046501 Bacteria 6055
93 Ga0495606_0004091 3300046507 Bacteria 14826
94 Ga0495610_0088930 3300046512 Bacteria 1403
95 Ga0495616_0044212 3300046513 Bacteria 2260
96 Ga0495618_0119452 3300046514 Bacteria 1688
97 Ga0495620_0010531 3300046515 Bacteria 4874
98 Ga0495631_0019823 3300046518 Bacteria 3149
99 Ga0495632_0030339 3300046519 Bacteria 2807
100 Ga0495648_0142372 3300046524 Bacteria 1260
101 Ga0495666_0042999 3300046526 Bacteria 2183
102 Ga0495652_0070108 3300046529 Bacteria 2932
103 Ga0495652_0247311 3300046529 Bacteria 1323
104 Ga0495640_0005159 3300046533 Bacteria 10386
105 Ga0495640_0005797 3300046533 Bacteria 9810
106 Ga0495587_0001854 3300046536 Bacteria 14065
107 Ga0495597_0013328 3300046542 Bacteria 3942
108 Ga0495622_0016342 3300046557 Bacteria 3455
109 Ga0495633_0008115 3300046558 Bacteria 5954
110 Ga0495668_0004244 3300046616 Bacteria 10297
111 Ga0495668_0015486 3300046616 Bacteria 4450
112 Ga0495634_0002718 3300046642 Bacteria 14551
113 Ga0495625_0000716 3300046660 Bacteria 46718
114 Ga0495625_0019637 3300046660 Bacteria 5234
115 Ga0495625_0043973 3300046660 Bacteria 3236
116 Ga0495635_0000606 3300046663 Bacteria 23102
117 Ga0495588_0014053 3300046674 Bacteria 3826
118 Ga0495657_0000364 3300046675 Bacteria 41806
119 Ga0495657_0038779 3300046675 Bacteria 3276
120 Ga0495623_0040473 3300046679 Bacteria 2976
121 Ga0495646_0009907 3300046680 Bacteria 6055
122 Ga0495613_0003438 3300046689 Bacteria 11836
123 Ga0495624_0040683 3300046690 Bacteria 2976
124 Ga0495624_0111385 3300046690 Bacteria 1683
125 Ga0495589_0004300 3300046794 Bacteria 7610
126 Ga0495589_0017668 3300046794 Bacteria 3660
127 Ga0495589_0030797 3300046794 Bacteria 2701
128 Ga0495589_0045474 3300046794 Bacteria 2180
129 Ga0495600_0020709 3300046809 Bacteria 4206
130 Ga0495600_0162760 3300046809 Bacteria 1442
131 Ga0495660_0087240 3300046810 Bacteria 1627
132 Ga0495604_0001704 3300047317 Bacteria 18070
133 Ga0495604_0033881 3300047317 Bacteria 4041
134 Ga0495604_0084633 3300047317 Bacteria 2368
135 Ga0495636_0001818 3300047318 Bacteria 8160
136 Ga0495676_0000768 3300047321 Bacteria 26771
137 Ga0495676_0002784 3300047321 Bacteria 15725
138 Ga0495676_0005303 3300047321 Bacteria 11804
139 Ga0495676_0007466 3300047321 Bacteria 10026
140 Ga0495676_0016330 3300047321 Bacteria 6593
141 Ga0495676_0028971 3300047321 Bacteria 4719
142 Ga0495676_0033128 3300047321 Bacteria 4355
143 Ga0495676_0034542 3300047321 Bacteria 4242
144 Ga0495680_0027354 3300047322 Bacteria 4688
145 Ga0495683_0005247 3300047323 Bacteria 7200
146 Ga0495683_0015981 3300047323 Bacteria 3898
147 Ga0495687_001025 3300047443 Bacteria 27840
148 Ga0495687_002596 3300047443 Bacteria 14219
149 Ga0495675_0096532 3300047444 Bacteria 1853
150 Ga0495685_001450 3300047447 Bacteria 7268
151 Ga0495685_003710 3300047447 Bacteria 4888
152 Ga0495685_014144 3300047447 Bacteria 2710
153 Ga0495685_015617 3300047447 Bacteria 2591
154 Ga0495685_027222 3300047447 Bacteria 1966
155 Ga0495593_0006148 3300047673 Bacteria 7063
156 Ga0495593_0047275 3300047673 Bacteria 2289
157 Ga0495614_0007790 3300048089 Bacteria 4760
158 Ga0495626_0000069 3300048091 Bacteria 139104
159 Ga0496103_0063967 3300048906 Bacteria 2292
160 Ga0496106_0034044 3300048909 Bacteria 3804
161 Ga0496108_0000104 3300048911 Bacteria 87781
162 Ga0496126_0167510 3300048929 Bacteria 1874
163 Ga0501306_006946 3300049127 Bacteria 1343
164 Ga0495678_034435 3300049459 Bacteria 2084
165 Ga0501031_0000972 3300049568 Bacteria 17408
166 Ga0501031_0007808 3300049568 Bacteria 6964
167 Ga0501031_0040585 3300049568 Bacteria 3038
168 Ga0501032_0012147 3300049569 Bacteria 6164
169 Ga0501032_0018067 3300049569 Bacteria 4946
170 Ga0501032_0020327 3300049569 Bacteria 4626
171 Ga0501033_0012320 3300049570 Bacteria 6527
172 Ga0501033_0020412 3300049570 Bacteria 5004
173 Ga0501033_0037434 3300049570 Bacteria 3632
174 Ga0501034_0006353 3300049571 Bacteria 12725
175 Ga0501034_0027485 3300049571 Bacteria 5788
176 Ga0501034_0074610 3300049571 Bacteria 3399
177 Ga0501036_0011179 3300049572 Bacteria 7428
178 Ga0501036_0136264 3300049572 Bacteria 2072
179 Ga0501037_0001882 3300049573 Bacteria 15254
180 Ga0501037_0012569 3300049573 Bacteria 6238
181 Ga0501038_0017119 3300049574 Bacteria 6556
182 Ga0501038_0032115 3300049574 Bacteria 4634
183 Ga0501038_0047897 3300049574 Bacteria 3701
184 Ga0501041_0008631 3300049577 Bacteria 6003
185 Ga0501042_0046761 3300049578 Bacteria 3085
186 Ga0501043_0002210 3300049579 Bacteria 16595
187 Ga0501043_0003543 3300049579 Bacteria 12828
188 Ga0501046_0005693 3300049580 Bacteria 11123
189 Ga0501046_0016713 3300049580 Bacteria 6137
190 Ga0501046_0026806 3300049580 Bacteria 4706
191 Ga0501046_0040195 3300049580 Bacteria 3739
192 Ga0501047_0000121 3300049581 Bacteria 95409
193 Ga0501047_0003988 3300049581 Bacteria 13874
194 Ga0501047_0035245 3300049581 Bacteria 4834
195 Ga0501047_0229748 3300049581 Bacteria 1709
196 Ga0501047_0297072 3300049581 Bacteria 1458
197 Ga0501047_0438605 3300049581 Bacteria 1136
198 Ga0501048_0002990 3300049582 Bacteria 12903
199 Ga0501048_0032957 3300049582 Bacteria 3743
200 Ga0501067_0011470 3300049583 Bacteria 4908
201 Ga0501068_0011476 3300049584 Bacteria 5001
202 Ga0501069_0034749 3300049585 Bacteria 2775
203 Ga0501070_0051718 3300049586 Bacteria 3409
204 Ga0501071_0040774 3300049587 Bacteria 3323
205 Ga0501072_0015578 3300049588 Bacteria 5827
206 Ga0501077_0033973 3300049593 Bacteria 3246
207 Ga0501079_0001236 3300049741 Bacteria 17901
208 Ga0501083_0012894 3300049744 Bacteria 5845
209 Ga0501083_0029136 3300049744 Bacteria 3800
210 Ga0501035_0001325 3300049822 Bacteria 25540
211 Ga0501035_0003738 3300049822 Bacteria 14513
212 Ga0501035_0005833 3300049822 Bacteria 11617
213 Ga0501035_0145350 3300049822 Bacteria 2060
214 Ga0501044_0003883 3300049823 Bacteria 16749
215 Ga0501044_0006007 3300049823 Bacteria 13413
216 Ga0501044_0069750 3300049823 Bacteria 3578
217 nmdc:mga03n38_11175_c1 3300050490 Bacteria 3336
218 nmdc:mga06z11_13574_c1 3300050494 Bacteria 3582
219 nmdc:mga04h51_20175_c1 3300050495 Bacteria 1986
220 nmdc:mga07m45_31289_c1 3300050496 Bacteria 2949
221 Ga0500644_0011398 3300053088 Bacteria 2429
222 Ga0500646_0000126 3300053090 Bacteria 21536
223 Ga0500647_0084449 3300053091 Bacteria 1523
224 Ga0500583_0010564 3300053092 Bacteria 3433
225 Ga0500640_026001 3300053095 Bacteria 2548
226 Ga0500572_013017 3300053111 Bacteria 2051
227 Ga0500594_0007409 3300053118 Bacteria 2482
228 Ga0500573_0003653 3300053140 Bacteria 7992
229 Ga0500573_0008593 3300053140 Bacteria 5629
230 Ga0500573_0049594 3300053140 Bacteria 2416
231 Ga0500573_0148616 3300053140 Bacteria 1285
232 Ga0500577_0083108 3300053142 Bacteria 1281
233 Ga0500588_0003462 3300053146 Bacteria 3335
234 Ga0501082_0015621 3300060353 Bacteria 6534
235 Ga0530510_0215533 3300061734 Bacteria 1426
236 2547405546 2547132111 Bacteria 8013147
237 2585306426 2582581313 Bacteria 10042643
238 2585320320 2582581314 Bacteria 11452267
239 2644270372 2643221647 Bacteria 10741251
240 2784585880 2784132148 Bacteria 8627943
241 2785342568 2784746763 Bacteria 9783172
242 2785366519 2784746768 Bacteria 10036182
243 2786667578 2786546132 Bacteria 10419719
244 2799183161 2799112218 Bacteria 4315149
245 2808917826 2808606375 Bacteria 9466072
246 2809229375 2808606448 Bacteria 8656184
247 2832009589 2832004796 Bacteria 6538017
248 2852637480 2852635781 Bacteria 8251373
249 2862281733 2862281513 Bacteria 9621493
250 2862709297 2862705112 Bacteria 6563286
251 2866066723 2866065130 Bacteria 6518152
252 2867507567 2867507094 Bacteria 6506033
253 2868091358 2868088558 Bacteria 7609351
254 2877684019 2877676314 Bacteria 9512378
255 2887482792 2887478801 Bacteria 8972725
256 2891399329 2891395885 Bacteria 9251614
257 2912716592 2912715099 Bacteria 9460473
258 2912764969 2912757875 Bacteria 7940295
259 2919394539 2919391150 Bacteria 4884741
260 2932434386 2932431166 Bacteria 4215299
261 2945956597 2945956166 Bacteria 5110334
262 2954389329 2954380949 Bacteria 10050426
263 2954690272 2954682443 Bacteria 9862841
264 2954700113 2954691527 Bacteria 10720516
265 2954702114 2954701450 Bacteria 10834262
266 2954718913 2954711539 Bacteria 10867210
267 2954728883 2954721474 Bacteria 10456478
268 2954732929 2954731030 Bacteria 10243860
269 2954747782 2954740390 Bacteria 10229294
270 2954751806 2954749733 Bacteria 10366972
271 3006324846 3006321560 Bacteria 8247479
272 8001787470 8001781756 Bacteria 9586736
273 8008486735 8008485437 Bacteria 7198341
274 8023627785 8023623736 Bacteria 8593882
275 8025525975 8025524527 Bacteria 7197316
276 Ga0307517_10120061
277 JGI24737J22298_10021728
278 Ga0070683_100026004
279 Ga0070668_100000291
280 Ga0070684_100004559
281 Ga0068862_100018422
282 Ga0070717_10230767
283 Ga0075365_10042352
284 Ga0075363_100000519
285 Ga0075428_100000360
286 Ga0105246_10217459
287 Ga0157369_10172503
288 Ga0182008_10002020
289 Ga0182007_10000293
290 Ga0224712_10034304
291 Ga0207647_10023250
292 Ga0207661_10049640
293 Ga0207668_10000882
294 Ga0207702_10155250
295 Ga0207674_10451790
296 Ga0209813_10029703
297 Ga0268266_10137122
298 Ga0268266_10291817
299 Ga0268265_10024090
300 Ga0265334_10002884
301 Ga0307517_10016099
302 Ga0307515_10000050
303 Ga0307515_10000167
304 Ga0307515_10013809
305 Ga0307515_10182214
306 Ga0307511_10001085
307 Ga0307511_10037024
308 Ga0307512_10017468
309 Ga0307513_10022313
310 Ga0307513_10049850
311 Ga0307513_10061761
312 Ga0307509_10030763
313 Ga0307509_10110282
314 Ga0307509_10201695
315 Ga0307508_10006502
316 Ga0307508_10021252
317 Ga0307508_10025546
318 Ga0307508_10025662
319 Ga0307508_10027940
320 Ga0307516_10003964
321 Ga0307516_10008923
322 Ga0307516_10018408
323 Ga0307516_10020860
324 Ga0307518_10034316
325 Ga0307409_100490827
326 Ga0307416_100009907
327 Ga0307415_100103849
328 Ga0307510_10003616
329 Ga0307510_10093140
330 Ga0373951_0000016
331 Ga0373935_0048201
332 Ga0439466_0017349
333 Ga0439432_007939
334 Ga0439449_0003570
335 Ga0439449_0026303
336 Ga0439462_0028363
337 Ga0466965_0038706
338 Ga0466961_0000214
339 Ga0466963_0000651
340 Ga0466971_0000079
341 Ga0466957_0000062
342 Ga0466959_0007431
343 Ga0466958_0000113
344 Ga0466967_0000163
345 Ga0466967_0027481
346 Ga0495627_056038
347 Ga0495592_0012547
348 Ga0495592_0039726
349 Ga0495592_0064467
350 Ga0495603_0007955
351 Ga0495629_0000729
352 Ga0495629_0016099
353 Ga0495629_0021514
354 Ga0495629_0041082
355 Ga0495638_0040207
356 Ga0495651_0007940
357 Ga0495582_0018935
358 Ga0495605_0009059
359 Ga0495662_0000151
360 Ga0495662_0114187
361 Ga0495664_0002212
362 Ga0495664_0068269
363 Ga0495594_0014989
364 Ga0495594_0026489
365 Ga0495594_0037253
366 Ga0495594_0097531
367 Ga0495607_0010980
368 Ga0495606_0004091
369 Ga0495610_0088930
370 Ga0495616_0044212
371 Ga0495618_0119452
372 Ga0495620_0010531
373 Ga0495631_0019823
374 Ga0495632_0030339
375 Ga0495648_0142372
376 Ga0495666_0042999
377 Ga0495652_0070108
378 Ga0495652_0247311
379 Ga0495640_0005159
380 Ga0495640_0005797
381 Ga0495587_0001854
382 Ga0495597_0013328
383 Ga0495622_0016342
384 Ga0495633_0008115
385 Ga0495668_0004244
386 Ga0495668_0015486
387 Ga0495634_0002718
388 Ga0495625_0000716
389 Ga0495625_0019637
390 Ga0495625_0043973
391 Ga0495635_0000606
392 Ga0495588_0014053
393 Ga0495657_0000364
394 Ga0495657_0038779
395 Ga0495623_0040473
396 Ga0495646_0009907
397 Ga0495613_0003438
398 Ga0495624_0040683
399 Ga0495624_0111385
400 Ga0495589_0004300
401 Ga0495589_0017668
402 Ga0495589_0030797
403 Ga0495589_0045474
404 Ga0495600_0020709
405 Ga0495600_0162760
406 Ga0495660_0087240
407 Ga0495604_0001704
408 Ga0495604_0033881
409 Ga0495604_0084633
410 Ga0495636_0001818
411 Ga0495676_0000768
412 Ga0495676_0002784
413 Ga0495676_0005303
414 Ga0495676_0007466
415 Ga0495676_0016330
416 Ga0495676_0028971
417 Ga0495676_0033128
418 Ga0495676_0034542
419 Ga0495680_0027354
420 Ga0495683_0005247
421 Ga0495683_0015981
422 Ga0495687_001025
423 Ga0495687_002596
424 Ga0495675_0096532
425 Ga0495685_001450
426 Ga0495685_003710
427 Ga0495685_014144
428 Ga0495685_015617
429 Ga0495685_027222
430 Ga0495593_0006148
431 Ga0495593_0047275
432 Ga0495614_0007790
433 Ga0495626_0000069
434 Ga0496103_0063967
435 Ga0496106_0034044
436 Ga0496108_0000104
437 Ga0496126_0167510
438 Ga0501306_006946
439 Ga0495678_034435
440 Ga0501031_0000972
441 Ga0501031_0007808
442 Ga0501031_0040585
443 Ga0501032_0012147
444 Ga0501032_0018067
445 Ga0501032_0020327
446 Ga0501033_0012320
447 Ga0501033_0020412
448 Ga0501033_0037434
449 Ga0501034_0006353
450 Ga0501034_0027485
451 Ga0501034_0074610
452 Ga0501036_0011179
453 Ga0501036_0136264
454 Ga0501037_0001882
455 Ga0501037_0012569
456 Ga0501038_0017119
457 Ga0501038_0032115
458 Ga0501038_0047897
459 Ga0501041_0008631
460 Ga0501042_0046761
461 Ga0501043_0002210
462 Ga0501043_0003543
463 Ga0501046_0005693
464 Ga0501046_0016713
465 Ga0501046_0026806
466 Ga0501046_0040195
467 Ga0501047_0000121
468 Ga0501047_0003988
469 Ga0501047_0035245
470 Ga0501047_0229748
471 Ga0501047_0297072
472 Ga0501047_0438605
473 Ga0501048_0002990
474 Ga0501048_0032957
475 Ga0501067_0011470
476 Ga0501068_0011476
477 Ga0501069_0034749
478 Ga0501070_0051718
479 Ga0501071_0040774
480 Ga0501072_0015578
481 Ga0501077_0033973
482 Ga0501079_0001236
483 Ga0501083_0012894
484 Ga0501083_0029136
485 Ga0501035_0001325
486 Ga0501035_0003738
487 Ga0501035_0005833
488 Ga0501035_0145350
489 Ga0501044_0003883
490 Ga0501044_0006007
491 Ga0501044_0069750
492 nmdc:mga03n38_11175_c1
493 nmdc:mga06z11_13574_c1
494 nmdc:mga04h51_20175_c1
495 nmdc:mga07m45_31289_c1
496 Ga0500644_0011398
497 Ga0500646_0000126
498 Ga0500647_0084449
499 Ga0500583_0010564
500 Ga0500640_026001
501 Ga0500572_013017
502 Ga0500594_0007409
503 Ga0500573_0003653
504 Ga0500573_0008593
505 Ga0500573_0049594
506 Ga0500573_0148616
507 Ga0500577_0083108
508 Ga0500588_0003462
509 Ga0501082_0015621
510 Ga0530510_0215533
511 2547405546
512 2585306426
513 2585320320
514 2644270372
515 2784585880
516 2785342568
517 2785366519
518 2786667578
519 2799183161
520 2808917826
521 2809229375
522 2832009589
523 2852637480
524 2862281733
525 2862709297
526 2866066723
527 2867507567
528 2868091358
529 2877684019
530 2887482792
531 2891399329
532 2912716592
533 2912764969
534 2919394539
535 2932434386
536 2945956597
537 2954389329
538 2954690272
539 2954700113
540 2954702114
541 2954718913
542 2954728883
543 2954732929
544 2954747782
545 2954751806
546 3006324846
547 8001787470
548 8008486735
549 8023627785
550 8025525975

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00356

LacI

Bacterial regulatory proteins, lacI family

25

70

0.98

PF13377

Peripla_BP_3

Periplasmic binding protein-like domain

177

335

0.92

PF00532

Peripla_BP_1

Periplasmic binding proteins and sugar binding domain of LacI family

82

333

0.89

PF13407

Peripla_BP_4

Periplasmic binding protein domain

92

317

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
1jye-assembly1.cif.gz_A-2 structure of a dimeric lac repressor with c-terminal deletion and k84l substitution 0.9047 77 345
1jyf-assembly1.cif.gz_A structure of the dimeric lac repressor with an 11-residue c-terminal deletion. 0.9034 77 345
3c3k-assembly1.cif.gz_B crystal structure of an uncharacterized protein from actinobacillus succinogenes 0.8974 74 342
3c3k-assembly1.cif.gz_A crystal structure of an uncharacterized protein from actinobacillus succinogenes 0.8968 74 342
1jye-assembly1.cif.gz_A-2 structure of a dimeric lac repressor with c-terminal deletion and k84l substitution 0.8952 77 345
ID Description Score Start End Superfamily
2jcgA01 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.9624 18 65 1.10.260.40
3kkeB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9536 177 299 3.40.50.2300
3c3kB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9372 177 299 3.40.50.2300
3cs3A02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9332 177 299 3.40.50.2300
3k4hB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9319 177 299 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A4V0ZJI8-F1-model_v4 Lactose operon repressor 0.9707 172 350 GO:0000976
GO:0003700
AF-A0A4V0ZJI8-F1-model_v4 Lactose operon repressor 0.9499 172 350 GO:0000976
GO:0003700
AF-A0A6C0QBV4-F1-model_v4 Putative HTH-type transcriptional repressor ExuR 0.938 173 346 GO:0000976
GO:0003700
AF-A0A660QII2-F1-model_v4 LacI family transcriptional regulator 0.9231 172 344 GO:0000976
GO:0003700
AF-A0A5H2X892-F1-model_v4 deleted 0.9203 159 350

Map