F378652

General Info

Members Datasets Scaffolds Average Seq Length
272 201 257 297

Family's Representative Sequence

Representative Sequence 3300049572|Ga0501036_0292502|Ga0501036_0292502_111_1118
Length 335
Sequence VAAQEQRPERRPIADRPSTGSTPLYEELRPGAFAIAYRMLGSASEAEDLVQEGLLRLHRALEEGERLESPKAYLSTVVTRLAIDELRSARARREVYVGEWLPEPILTAEDSDPERHAEIAESLSVGLLVVLETLSPEQRAVFLLREVFDYPYERIAGVLGKTPAAVRQLAVRARRHVGEREPRFETSREQRDRLADRFFEAFEDGNLEALEALLADDVTLRGDGGGKAPAIARALHGRVRVARTIRAFSRAAPRFGFAELRRVEVNGEAGALALDQDGRLISTIVLEIAGGQIRAVNSVVNPDKLHHLGPVADLEALLGRGRAGGPVPSSSGSVA

Samples

Sample ID Description Type Environment
1 2510917020 Caulobacter sp. AP07 Isolate Rhizosphere
2 2582581279 Caulobacter henricii OK261 Isolate Rhizosphere
3 2585428106 Caulobacter sp. OV484 Isolate Rhizosphere
4 2643221552 Caulobacter sp. Root1472 Isolate Unclassified
5 2643221583 Caulobacter sp. Root655 Isolate Unclassified
6 2643221584 Caulobacter sp. Root656 Isolate Unclassified
7 2643221640 Caulobacter sp. Root342 Isolate Unclassified
8 2643221642 Caulobacter sp. Root343 Isolate Unclassified
9 2816332119 Kribbella amoyensis DSM 24683 Isolate Rhizosphere
10 2818991458 Terrabacter sp. 3211 Isolate Rhizosphere
11 2857504554 Caulobacter sp. R-72291 Isolate Unclassified
12 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified
13 2904113452 Paenibacillus paridis py1325 Isolate Unclassified
14 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
15 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
16 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
17 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
18 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
19 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
20 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
21 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
22 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
23 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
24 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
25 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
26 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
27 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
28 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
29 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
30 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
31 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
32 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
33 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
34 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
35 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
36 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
37 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
38 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
39 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
40 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
41 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
42 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
43 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
44 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
45 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
46 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
47 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
48 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
49 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
50 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
51 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
52 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
53 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
54 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
55 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
56 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
57 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
58 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
59 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
60 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
61 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
62 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
63 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
64 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
65 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
66 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
67 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
68 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
69 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
70 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
71 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
72 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
73 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
74 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
75 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
76 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
77 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
78 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
79 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
80 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
81 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
82 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
83 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
84 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
85 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
86 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
87 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
88 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
89 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
113 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
114 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
115 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
116 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
117 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
118 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
119 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
120 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
121 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
122 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
123 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
124 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
125 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
126 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
127 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
128 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
129 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
130 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
131 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
132 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
133 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
134 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
135 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
136 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
137 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
138 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
139 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
140 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
141 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
142 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
143 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
144 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
145 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
146 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
147 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
148 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
149 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
150 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
151 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
152 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
153 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
154 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
155 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
156 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
157 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
158 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
159 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
160 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
161 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
162 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
163 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
164 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
165 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
166 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
167 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
168 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
169 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
170 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
171 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
172 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
173 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
174 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
175 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
176 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
177 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
178 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
179 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
180 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
181 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
182 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
183 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
184 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
185 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
186 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
187 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
188 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
189 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
190 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
191 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
192 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
193 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
194 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
195 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
196 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
197 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
198 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
199 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
200 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
201 8056054917 Glycomyces luteolus NEAU-A15 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.12
Metatranscriptomes 0.37
Isolates 5.51

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.13
Nodule 0
Rhizoplane 6.25
Rhizosphere 71.69
Stem 0
Stem Tuber 0
Unclassified 9.93

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25153J46596_10025479 3300003215 Bacteria 2112
2 rootH2_10217146 3300003320 Bacteria 1751
3 Ga0055526_1024292 3300003771 Bacteria 1988
4 Ga0055537_1012607 3300003773 Bacteria 1638
5 Ga0055536_1002099 3300003781 Bacteria 11345
6 Ga0055528_1011583 3300003790 Bacteria 3488
7 Ga0055530_10003957 3300003791 Bacteria 8012
8 Ga0065165_1003413 3300005262 Bacteria 11197
9 Ga0070658_10039328 3300005327 Bacteria 3815
10 Ga0070658_10288877 3300005327 Bacteria 1397
11 Ga0070683_100001598 3300005329 Bacteria 17527
12 Ga0070683_100130790 3300005329 Bacteria 2375
13 Ga0068869_100221171 3300005334 Bacteria 1501
14 Ga0068869_100284768 3300005334 Bacteria 1330
15 Ga0070680_100068552 3300005336 Bacteria 2912
16 Ga0070660_100025936 3300005339 Bacteria 4360
17 Ga0070691_10002057 3300005341 Bacteria 8880
18 Ga0070691_10104526 3300005341 Bacteria 1410
19 Ga0070692_10029975 3300005345 Bacteria 2717
20 Ga0070671_100002804 3300005355 Bacteria 13544
21 Ga0070674_100164326 3300005356 Bacteria 1687
22 Ga0070659_100400773 3300005366 Bacteria 1158
23 Ga0070667_100007268 3300005367 Bacteria 9205
24 Ga0070667_100057525 3300005367 Bacteria 3287
25 Ga0070667_100096986 3300005367 Bacteria 2543
26 Ga0070714_100001346 3300005435 Bacteria 17769
27 Ga0070713_100000338 3300005436 Bacteria 30431
28 Ga0070700_100003705 3300005441 Bacteria 7900
29 Ga0070663_100001559 3300005455 Bacteria 12623
30 Ga0068867_100018309 3300005459 Bacteria 4979
31 Ga0070707_100023225 3300005468 Bacteria 5866
32 Ga0070679_100186361 3300005530 Bacteria 2045
33 Ga0070684_100000337 3300005535 Bacteria 32508
34 Ga0070684_100297799 3300005535 Bacteria 1480
35 Ga0070672_100003075 3300005543 Bacteria 10762
36 Ga0070686_100072849 3300005544 Bacteria 2254
37 Ga0070704_100111898 3300005549 Bacteria 2079
38 Ga0070664_100027184 3300005564 Bacteria 4753
39 Ga0070664_100198271 3300005564 Bacteria 1790
40 Ga0068857_100000911 3300005577 Bacteria 22320
41 Ga0068857_100206070 3300005577 Bacteria 1794
42 Ga0068854_100004827 3300005578 Bacteria 8509
43 Ga0068856_100001688 3300005614 Bacteria 23088
44 Ga0070702_100233846 3300005615 Bacteria 1236
45 Ga0068852_100064176 3300005616 Bacteria 3201
46 Ga0068859_100150700 3300005617 Bacteria 2401
47 Ga0068864_100066202 3300005618 Bacteria 3136
48 Ga0068866_10088419 3300005718 Bacteria 1681
49 Ga0068851_10014522 3300005834 Bacteria 3740
50 Ga0068863_100174600 3300005841 Bacteria 2062
51 Ga0068858_100045248 3300005842 Bacteria 4078
52 Ga0068858_100176551 3300005842 Bacteria 2016
53 Ga0068860_100072311 3300005843 Bacteria 3277
54 Ga0081455_10031532 3300005937 Bacteria 4792
55 Ga0081455_10066216 3300005937 Bacteria 3018
56 Ga0081538_10000512 3300005981 Bacteria 43332
57 Ga0075364_10016308 3300006051 Bacteria 4620
58 Ga0075366_10011569 3300006195 Bacteria 4984
59 Ga0075366_10051243 3300006195 Bacteria 2452
60 Ga0097620_100150711 3300006931 Bacteria 2401
61 Ga0105245_10322091 3300009098 Bacteria 1523
62 Ga0114129_10465340 3300009147 Bacteria 1657
63 Ga0105243_10032546 3300009148 Bacteria 4029
64 Ga0105237_10125487 3300009545 Bacteria 2561
65 Ga0105239_10028161 3300010375 Bacteria 6182
66 Ga0105246_10205328 3300011119 Bacteria 1535
67 Ga0157373_10063732 3300013100 Bacteria 2609
68 Ga0157370_10002208 3300013104 Bacteria 23766
69 Ga0157369_10009138 3300013105 Bacteria 11341
70 Ga0157378_10604319 3300013297 Bacteria 1108
71 Ga0163162_10106415 3300013306 Bacteria 2900
72 Ga0157372_10122692 3300013307 Bacteria 2986
73 Ga0157372_10405118 3300013307 Bacteria 1589
74 Ga0163163_10170524 3300014325 Bacteria 2223
75 Ga0163163_10262685 3300014325 Bacteria 1777
76 Ga0157380_10007673 3300014326 Bacteria 7678
77 Ga0157377_10002934 3300014745 Bacteria 7622
78 Ga0157379_10112993 3300014968 Bacteria 2441
79 Ga0163161_10329404 3300017792 Bacteria 1209
80 Ga0224712_10075414 3300022467 Bacteria 1380
81 Ga0209565_1000234 3300025263 Bacteria 60830
82 Ga0209673_1001141 3300025273 Bacteria 29196
83 Ga0209673_1022009 3300025273 Bacteria 2212
84 Ga0209676_1000163 3300025292 Bacteria 157845
85 Ga0209564_1009415 3300025295 Bacteria 4654
86 Ga0209758_1001021 3300025297 Bacteria 37026
87 Ga0209050_1001123 3300025298 Bacteria 32326
88 Ga0209256_1008218 3300025299 Bacteria 4896
89 Ga0209256_1025805 3300025299 Bacteria 1705
90 Ga0209051_1001854 3300025303 Bacteria 16649
91 Ga0207642_10110290 3300025899 Bacteria 1400
92 Ga0207688_10001430 3300025901 Bacteria 12455
93 Ga0207657_10001468 3300025919 Bacteria 25214
94 Ga0207652_10397846 3300025921 Bacteria 1243
95 Ga0207646_10008355 3300025922 Bacteria 10389
96 Ga0207694_10248587 3300025924 Bacteria 1455
97 Ga0207700_10000824 3300025928 Bacteria 17927
98 Ga0207664_10010179 3300025929 Bacteria 6638
99 Ga0207690_10168191 3300025932 Bacteria 1640
100 Ga0207706_10007319 3300025933 Bacteria 10206
101 Ga0207669_10005830 3300025937 Bacteria 5572
102 Ga0207704_10026454 3300025938 Bacteria 3184
103 Ga0207691_10003031 3300025940 Bacteria 16392
104 Ga0207711_10042578 3300025941 Bacteria 3869
105 Ga0207689_10251981 3300025942 Bacteria 1460
106 Ga0207661_10000644 3300025944 Bacteria 22510
107 Ga0207679_10037980 3300025945 Bacteria 3428
108 Ga0207658_10067141 3300025986 Bacteria 2700
109 Ga0207658_10073287 3300025986 Bacteria 2599
110 Ga0207703_10008110 3300026035 Bacteria 8302
111 Ga0207678_10000683 3300026067 Bacteria 31055
112 Ga0207708_10002379 3300026075 Bacteria 13821
113 Ga0207702_10000572 3300026078 Bacteria 40906
114 Ga0207641_10136170 3300026088 Bacteria 2211
115 Ga0207648_10074130 3300026089 Bacteria 2966
116 Ga0207674_10000316 3300026116 Bacteria 61727
117 Ga0207674_10060438 3300026116 Bacteria 3831
118 Ga0207428_10210720 3300027907 Bacteria 1460
119 Ga0268266_10083830 3300028379 Bacteria 2783
120 Ga0268264_10106618 3300028381 Bacteria 2446
121 Ga0268264_10213253 3300028381 Bacteria 1773
122 Ga0307515_10004604 3300028794 Bacteria 28368
123 Ga0307515_10024708 3300028794 Bacteria 10447
124 Ga0307515_10165115 3300028794 Bacteria 2236
125 Ga0307512_10003136 3300030522 Bacteria 19661
126 Ga0307512_10004561 3300030522 Bacteria 15110
127 Ga0307512_10025171 3300030522 Bacteria 5280
128 Ga0307513_10000099 3300031456 Bacteria 125847
129 Ga0307513_10053334 3300031456 Bacteria 4347
130 Ga0307508_10007892 3300031616 Bacteria 9876
131 Ga0307516_10000979 3300031730 Bacteria 39512
132 Ga0307516_10006574 3300031730 Bacteria 13595
133 Ga0307516_10010275 3300031730 Bacteria 10310
134 Ga0307516_10066170 3300031730 Bacteria 3487
135 Ga0307516_10084163 3300031730 Bacteria 3020
136 Ga0307413_10023550 3300031824 Bacteria 3339
137 Ga0307407_10103517 3300031903 Bacteria 1772
138 Ga0307412_10105736 3300031911 Bacteria 2000
139 Ga0307409_100000711 3300031995 Bacteria 14843
140 Ga0307416_100013684 3300032002 Bacteria 5523
141 Ga0307416_100220656 3300032002 Bacteria 1818
142 Ga0307415_100019528 3300032126 Bacteria 4116
143 Ga0307510_10200679 3300033180 Bacteria 1530
144 Ga0373951_0000201 3300035091 Bacteria 21706
145 Ga0373962_0001027 3300035242 Bacteria 6461
146 Ga0395899_0066310 3300037312 Bacteria 2651
147 Ga0395899_0160651 3300037312 Bacteria 1588
148 Ga0395899_0225052 3300037312 Bacteria 1298
149 Ga0395900_0023992 3300037418 Bacteria 6242
150 Ga0395900_0119950 3300037418 Bacteria 2699
151 Ga0395898_0007297 3300037466 Bacteria 11734
152 Ga0395898_0191244 3300037466 Bacteria 1955
153 Ga0395898_0281096 3300037466 Bacteria 1588
154 Ga0395905_0146835 3300037471 Bacteria 2219
155 Ga0395901_0026292 3300038443 Bacteria 5976
156 Ga0395901_0234215 3300038443 Bacteria 1917
157 Ga0439436_0013052 3300041404 Bacteria 2516
158 Ga0439438_021323 3300041405 Bacteria 1809
159 Ga0451789_0059369 3300041443 Bacteria 1138
160 Ga0451791_1120523 3300041451 Bacteria 2123
161 Ga0439446_0003748 3300042156 Bacteria 3799
162 Ga0466972_0014606 3300044658 Bacteria 3931
163 Ga0495627_001019 3300046453 Bacteria 18790
164 Ga0495627_004594 3300046453 Bacteria 5733
165 Ga0495590_0039069 3300046457 Bacteria 1655
166 Ga0495638_0000474 3300046460 Bacteria 48314
167 Ga0495638_0023704 3300046460 Bacteria 4010
168 Ga0495638_0040246 3300046460 Bacteria 2962
169 Ga0495638_0047862 3300046460 Bacteria 2679
170 Ga0495607_0016185 3300046501 Bacteria 4816
171 Ga0495610_0000360 3300046512 Bacteria 47556
172 Ga0495610_0002593 3300046512 Bacteria 14995
173 Ga0495610_0003893 3300046512 Bacteria 11327
174 Ga0495616_0000053 3300046513 Bacteria 104389
175 Ga0495628_0060713 3300046516 Bacteria 2966
176 Ga0495631_0028911 3300046518 Bacteria 2526
177 Ga0495632_0000335 3300046519 Bacteria 44771
178 Ga0495632_0071312 3300046519 Bacteria 1669
179 Ga0495637_0024456 3300046520 Bacteria 2733
180 Ga0495637_0096686 3300046520 Bacteria 1158
181 Ga0495648_0048050 3300046524 Bacteria 2631
182 Ga0495597_0027907 3300046542 Bacteria 2586
183 Ga0495668_0000100 3300046616 Bacteria 137684
184 Ga0495668_0002197 3300046616 Bacteria 16632
185 Ga0495668_0005019 3300046616 Bacteria 9132
186 Ga0495668_0018135 3300046616 Bacteria 4070
187 Ga0495625_0000290 3300046660 Bacteria 77650
188 Ga0495625_0033130 3300046660 Bacteria 3823
189 Ga0495625_0062713 3300046660 Bacteria 2626
190 Ga0495625_0143925 3300046660 Bacteria 1607
191 Ga0495625_0194577 3300046660 Bacteria 1341
192 Ga0495671_0177439 3300046692 Bacteria 1035
193 Ga0495589_0007747 3300046794 Bacteria 5621
194 Ga0495660_0062378 3300046810 Bacteria 1998
195 Ga0495660_0104877 3300046810 Bacteria 1450
196 Ga0495674_0052686 3300047319 Bacteria 3580
197 Ga0495672_0002515 3300047320 Bacteria 16756
198 Ga0495672_0060805 3300047320 Bacteria 2180
199 Ga0495683_0079608 3300047323 Bacteria 1600
200 Ga0495673_0000025 3300047469 Bacteria 512352
201 Ga0495686_0002668 3300047472 Bacteria 16432
202 Ga0495686_0013303 3300047472 Bacteria 5715
203 Ga0495593_0072500 3300047673 Bacteria 1788
204 Ga0496102_0371485 3300048905 Bacteria 1346
205 Ga0496106_0076347 3300048909 Bacteria 2568
206 Ga0496108_0000020 3300048911 Bacteria 226992
207 Ga0496108_0017090 3300048911 Bacteria 5932
208 Ga0496109_0018466 3300048912 Bacteria 6126
209 Ga0496109_0099841 3300048912 Bacteria 2692
210 Ga0496109_0920544 3300048912 Bacteria 812
211 Ga0496110_0013750 3300048913 Bacteria 6707
212 Ga0496110_0215028 3300048913 Bacteria 1748
213 Ga0496111_0049627 3300048914 Bacteria 3026
214 Ga0496111_0102119 3300048914 Bacteria 2108
215 Ga0496111_0286224 3300048914 Bacteria 1222
216 Ga0496112_0022479 3300048915 Bacteria 6010
217 Ga0496115_0067514 3300048918 Bacteria 2892
218 Ga0496115_0105883 3300048918 Bacteria 2308
219 Ga0496126_0105332 3300048929 Bacteria 2463
220 Ga0496126_0208814 3300048929 Bacteria 1645
221 Ga0496126_0273536 3300048929 Bacteria 1401
222 Ga0501033_0065338 3300049570 Bacteria 2677
223 Ga0501036_0241371 3300049572 Bacteria 1515
224 Ga0501036_0292502 3300049572 Bacteria 1363
225 Ga0501038_0305718 3300049574 Bacteria 1247
226 Ga0501038_0410479 3300049574 Bacteria 1046
227 Ga0501039_0013323 3300049575 Bacteria 6286
228 Ga0501039_0225786 3300049575 Bacteria 1472
229 Ga0501041_0094284 3300049577 Bacteria 1849
230 Ga0501042_0035987 3300049578 Bacteria 3512
231 Ga0501042_0122249 3300049578 Bacteria 1875
232 Ga0501042_0328683 3300049578 Bacteria 1105
233 Ga0501046_0080933 3300049580 Bacteria 2509
234 Ga0501071_0026281 3300049587 Bacteria 4085
235 Ga0501071_0262690 3300049587 Bacteria 1304
236 Ga0501071_0389595 3300049587 Bacteria 1063
237 Ga0501072_0039064 3300049588 Bacteria 3727
238 Ga0501238_000932 3300049671 Bacteria 3344
239 Ga0501083_0263733 3300049744 Bacteria 1121
240 Ga0501045_0081151 3300049824 Bacteria 2391
241 nmdc:mga0k408_110210_c1 3300050493 Bacteria 1627
242 nmdc:mga0k408_7171_c1 3300050493 Bacteria 5956
243 nmdc:mga08y16_109346_c1 3300050511 Bacteria 2878
244 Ga0495612_0000553 3300053078 Bacteria 15041
245 Ga0500583_0052264 3300053092 Bacteria 1901
246 Ga0500556_0001188 3300053104 Bacteria 12360
247 Ga0500608_000027 3300053122 Bacteria 66998
248 Ga0500614_005299 3300053123 Bacteria 2707
249 Ga0500559_0005010 3300053136 Bacteria 6148
250 Ga0500568_0031322 3300053139 Bacteria 2196
251 Ga0500577_0026528 3300053142 Bacteria 1974
252 Ga0500600_0011141 3300053149 Bacteria 5463
253 Ga0500622_0004385 3300053156 Bacteria 8894
254 Ga0500622_0010054 3300053156 Bacteria 5212
255 Ga0500645_006413 3300053730 Bacteria 4201
256 Ga0501084_0163372 3300054114 Bacteria 1879
257 Ga0501082_0176995 3300060353 Bacteria 1855

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049577 Ga0501041_0094284 Ga0501041_0094284_33_872 229
2 3300048912 Ga0496109_0920544 Ga0496109_0920544_32_790 231
3 3300017792 Ga0163161_10329404 Ga0163161_103294042 250
4 3300049574 Ga0501038_0305718 Ga0501038_0305718_98_1006 253
5 3300049575 Ga0501039_0013323 Ga0501039_0013323_5317_6225 253
6 3300049578 Ga0501042_0035987 Ga0501042_0035987_1508_2416 253
7 3300049580 Ga0501046_0080933 Ga0501046_0080933_475_1383 253
8 3300049587 Ga0501071_0026281 Ga0501071_0026281_161_1069 253
9 3300049588 Ga0501072_0039064 Ga0501072_0039064_684_1592 253
10 3300054114 Ga0501084_0163372 Ga0501084_0163372_346_1254 253
11 3300005937 Ga0081455_10066216 Ga0081455_100662163 255
12 3300013100 Ga0157373_10063732 Ga0157373_100637323 257
13 3300060353 Ga0501082_0176995 Ga0501082_0176995_31_972 257
14 3300013297 Ga0157378_10604319 Ga0157378_106043191 259
15 3300038443 Ga0395901_0234215 Ga0395901_0234215_364_1227 260
16 3300049572 Ga0501036_0241371 Ga0501036_0241371_331_1272 260
17 3300049574 Ga0501038_0410479 Ga0501038_0410479_69_1010 260
18 3300049575 Ga0501039_0225786 Ga0501039_0225786_484_1425 260
19 3300049587 Ga0501071_0262690 Ga0501071_0262690_68_1009 260
20 3300049744 Ga0501083_0263733 Ga0501083_0263733_83_1024 260
21 3300049824 Ga0501045_0081151 Ga0501045_0081151_1160_2101 260
22 3300003320 rootH2_10217146 rootH2_102171462 261
23 3300013104 Ga0157370_10002208 Ga0157370_1000220821 264
24 3300050511 nmdc:mga08y16_109346_c1 nmdc:mga08y16_109346_c1_1993_2868 267
25 3300046692 Ga0495671_0177439 Ga0495671_0177439_201_1013 270
26 3300048914 Ga0496111_0102119 Ga0496111_0102119_752_1648 271
27 iso_pu_bacteria 2870782633 2870784578 271
28 3300005577 Ga0068857_100206070 Ga0068857_1002060702 275
29 3300005618 Ga0068864_100066202 Ga0068864_1000662023 275
30 3300014325 Ga0163163_10170524 Ga0163163_101705243 275
31 3300037312 Ga0395899_0066310 Ga0395899_0066310_1033_1941 275
32 3300037418 Ga0395900_0023992 Ga0395900_0023992_1644_2552 275
33 3300037466 Ga0395898_0007297 Ga0395898_0007297_4441_5349 275
34 3300038443 Ga0395901_0026292 Ga0395901_0026292_963_1871 275
35 3300048912 Ga0496109_0099841 Ga0496109_0099841_159_1061 275
36 3300048913 Ga0496110_0215028 Ga0496110_0215028_720_1622 275
37 3300048914 Ga0496111_0286224 Ga0496111_0286224_84_986 275
38 iso_pu_bacteria 2904113452 2904117781 275
39 3300046453 Ga0495627_004594 Ga0495627_004594_4225_5178 277
40 3300053139 Ga0500568_0031322 Ga0500568_0031322_391_1344 277
41 3300005334 Ga0068869_100284768 Ga0068869_1002847681 278
42 3300005367 Ga0070667_100007268 Ga0070667_1000072684 278
43 3300005617 Ga0068859_100150700 Ga0068859_1001507002 278
44 3300005841 Ga0068863_100174600 Ga0068863_1001746002 278
45 3300005842 Ga0068858_100045248 Ga0068858_1000452483 278
46 3300005843 Ga0068860_100072311 Ga0068860_1000723112 278
47 3300006931 Ga0097620_100150711 Ga0097620_1001507112 278
48 3300014968 Ga0157379_10112993 Ga0157379_101129932 278
49 3300025986 Ga0207658_10067141 Ga0207658_100671412 278
50 3300026035 Ga0207703_10008110 Ga0207703_100081103 278
51 3300026088 Ga0207641_10136170 Ga0207641_101361701 278
52 3300028381 Ga0268264_10106618 Ga0268264_101066182 278
53 3300037466 Ga0395898_0281096 Ga0395898_0281096_551_1435 278
54 3300009147 Ga0114129_10465340 Ga0114129_104653402 279
55 3300028794 Ga0307515_10004604 Ga0307515_1000460411 279
56 3300031730 Ga0307516_10066170 Ga0307516_100661702 279
57 3300035242 Ga0373962_0001027 Ga0373962_0001027_1302_2177 279
58 3300048905 Ga0496102_0371485 Ga0496102_0371485_414_1268 279
59 3300048911 Ga0496108_0000020 Ga0496108_0000020_30718_31581 279
60 iso_pu_bacteria 2816332119 2816424991 279
61 iso_pu_bacteria 2818991458 2819667556 279
62 3300005327 Ga0070658_10039328 Ga0070658_100393284 280
63 3300005329 Ga0070683_100130790 Ga0070683_1001307902 280
64 3300005334 Ga0068869_100221171 Ga0068869_1002211712 280
65 3300005336 Ga0070680_100068552 Ga0070680_1000685523 280
66 3300005339 Ga0070660_100025936 Ga0070660_1000259363 280
67 3300005345 Ga0070692_10029975 Ga0070692_100299752 280
68 3300005355 Ga0070671_100002804 Ga0070671_1000028049 280
69 3300005356 Ga0070674_100164326 Ga0070674_1001643262 280
70 3300005367 Ga0070667_100057525 Ga0070667_1000575252 280
71 3300005367 Ga0070667_100096986 Ga0070667_1000969863 280
72 3300005441 Ga0070700_100003705 Ga0070700_1000037054 280
73 3300005455 Ga0070663_100001559 Ga0070663_1000015592 280
74 3300005459 Ga0068867_100018309 Ga0068867_1000183093 280
75 3300005530 Ga0070679_100186361 Ga0070679_1001863612 280
76 3300005535 Ga0070684_100297799 Ga0070684_1002977992 280
77 3300005543 Ga0070672_100003075 Ga0070672_1000030758 280
78 3300005544 Ga0070686_100072849 Ga0070686_1000728492 280
79 3300005549 Ga0070704_100111898 Ga0070704_1001118982 280
80 3300005564 Ga0070664_100198271 Ga0070664_1001982712 280
81 3300005578 Ga0068854_100004827 Ga0068854_1000048273 280
82 3300005615 Ga0070702_100233846 Ga0070702_1002338462 280
83 3300005616 Ga0068852_100064176 Ga0068852_1000641762 280
84 3300005718 Ga0068866_10088419 Ga0068866_100884192 280
85 3300005834 Ga0068851_10014522 Ga0068851_100145224 280
86 3300005842 Ga0068858_100176551 Ga0068858_1001765512 280
87 3300005937 Ga0081455_10031532 Ga0081455_100315326 280
88 3300006051 Ga0075364_10016308 Ga0075364_100163083 280
89 3300009098 Ga0105245_10322091 Ga0105245_103220911 280
90 3300009148 Ga0105243_10032546 Ga0105243_100325464 280
91 3300010375 Ga0105239_10028161 Ga0105239_100281615 280
92 3300011119 Ga0105246_10205328 Ga0105246_102053281 280
93 3300013306 Ga0163162_10106415 Ga0163162_101064154 280
94 3300013307 Ga0157372_10405118 Ga0157372_104051182 280
95 3300014325 Ga0163163_10262685 Ga0163163_102626852 280
96 3300014326 Ga0157380_10007673 Ga0157380_100076735 280
97 3300014745 Ga0157377_10002934 Ga0157377_100029342 280
98 3300025899 Ga0207642_10110290 Ga0207642_101102902 280
99 3300025901 Ga0207688_10001430 Ga0207688_1000143010 280
100 3300025919 Ga0207657_10001468 Ga0207657_100014688 280
101 3300025921 Ga0207652_10397846 Ga0207652_103978461 280
102 3300025924 Ga0207694_10248587 Ga0207694_102485872 280
103 3300025932 Ga0207690_10168191 Ga0207690_101681912 280
104 3300025933 Ga0207706_10007319 Ga0207706_100073198 280
105 3300025937 Ga0207669_10005830 Ga0207669_100058303 280
106 3300025938 Ga0207704_10026454 Ga0207704_100264542 280
107 3300025940 Ga0207691_10003031 Ga0207691_100030317 280
108 3300025941 Ga0207711_10042578 Ga0207711_100425782 280
109 3300025942 Ga0207689_10251981 Ga0207689_102519812 280
110 3300025986 Ga0207658_10073287 Ga0207658_100732873 280
111 3300026067 Ga0207678_10000683 Ga0207678_1000068316 280
112 3300026075 Ga0207708_10002379 Ga0207708_100023795 280
113 3300026089 Ga0207648_10074130 Ga0207648_100741303 280
114 3300026116 Ga0207674_10060438 Ga0207674_100604382 280
115 3300027907 Ga0207428_10210720 Ga0207428_102107202 280
116 3300028379 Ga0268266_10083830 Ga0268266_100838302 280
117 3300028381 Ga0268264_10213253 Ga0268264_102132532 280
118 3300030522 Ga0307512_10003136 Ga0307512_100031369 280
119 3300030522 Ga0307512_10004561 Ga0307512_100045617 280
120 3300030522 Ga0307512_10025171 Ga0307512_100251713 280
121 3300031456 Ga0307513_10000099 Ga0307513_1000009957 280
122 3300031456 Ga0307513_10053334 Ga0307513_100533341 280
123 3300031616 Ga0307508_10007892 Ga0307508_100078925 280
124 3300031730 Ga0307516_10000979 Ga0307516_1000097941 280
125 3300031730 Ga0307516_10006574 Ga0307516_100065743 280
126 3300031730 Ga0307516_10010275 Ga0307516_100102756 280
127 3300031730 Ga0307516_10084163 Ga0307516_100841633 280
128 3300032002 Ga0307416_100220656 Ga0307416_1002206562 280
129 3300033180 Ga0307510_10200679 Ga0307510_102006792 280
130 3300035091 Ga0373951_0000201 Ga0373951_0000201_1736_2611 280
131 3300041404 Ga0439436_0013052 Ga0439436_0013052_974_1873 280
132 3300041405 Ga0439438_021323 Ga0439438_021323_102_1001 280
133 3300041443 Ga0451789_0059369 Ga0451789_0059369_52_945 280
134 3300041451 Ga0451791_1120523 Ga0451791_1120523_509_1381 280
135 3300044658 Ga0466972_0014606 Ga0466972_0014606_98_1006 280
136 3300046460 Ga0495638_0023704 Ga0495638_0023704_1783_2673 280
137 3300046519 Ga0495632_0071312 Ga0495632_0071312_385_1263 280
138 3300046660 Ga0495625_0143925 Ga0495625_0143925_283_1176 280
139 3300047320 Ga0495672_0060805 Ga0495672_0060805_1217_2134 280
140 3300048909 Ga0496106_0076347 Ga0496106_0076347_1129_2046 280
141 3300048911 Ga0496108_0017090 Ga0496108_0017090_405_1322 280
142 3300048912 Ga0496109_0018466 Ga0496109_0018466_46_963 280
143 3300048913 Ga0496110_0013750 Ga0496110_0013750_222_1139 280
144 3300048929 Ga0496126_0105332 Ga0496126_0105332_484_1401 280
145 3300048929 Ga0496126_0208814 Ga0496126_0208814_547_1425 280
146 3300049570 Ga0501033_0065338 Ga0501033_0065338_940_1812 280
147 3300049578 Ga0501042_0122249 Ga0501042_0122249_327_1274 280
148 3300049578 Ga0501042_0328683 Ga0501042_0328683_139_1056 280
149 3300053092 Ga0500583_0052264 Ga0500583_0052264_536_1414 280
150 3300053149 Ga0500600_0011141 Ga0500600_0011141_1361_2251 280
151 iso_pu_bacteria 2510917020 2511120458 280
152 iso_pu_bacteria 2582581279 2585149109 280
153 iso_pu_bacteria 2585428106 2587915504 280
154 iso_pu_bacteria 2643221552 2643781409 280
155 iso_pu_bacteria 2643221583 2643923096 280
156 iso_pu_bacteria 2643221584 2643929120 280
157 iso_pu_bacteria 2643221640 2644224065 280
158 iso_pu_bacteria 2643221642 2644233051 280
159 iso_pu_bacteria 2857504554 2857507919 280
160 iso_pu_bacteria 2946041624 2946042436 280
161 iso_pu_bacteria 8056054917 8056056478 280
162 3300005366 Ga0070659_100400773 Ga0070659_1004007731 281
163 3300031824 Ga0307413_10023550 Ga0307413_100235503 281
164 3300031903 Ga0307407_10103517 Ga0307407_101035172 281
165 3300031911 Ga0307412_10105736 Ga0307412_101057361 281
166 3300031995 Ga0307409_100000711 Ga0307409_1000007119 281
167 3300032002 Ga0307416_100013684 Ga0307416_1000136844 281
168 3300032126 Ga0307415_100019528 Ga0307415_1000195282 281
169 3300037312 Ga0395899_0160651 Ga0395899_0160651_438_1370 281
170 3300037418 Ga0395900_0119950 Ga0395900_0119950_880_1812 281
171 3300037466 Ga0395898_0191244 Ga0395898_0191244_49_981 281
172 3300046516 Ga0495628_0060713 Ga0495628_0060713_2011_2931 281
173 3300047673 Ga0495593_0072500 Ga0495593_0072500_242_1159 281
174 3300053078 Ga0495612_0000553 Ga0495612_0000553_11109_12029 281
175 3300005327 Ga0070658_10288877 Ga0070658_102888772 282
176 3300005329 Ga0070683_100001598 Ga0070683_1000015989 282
177 3300005341 Ga0070691_10002057 Ga0070691_100020574 282
178 3300005341 Ga0070691_10104526 Ga0070691_101045261 282
179 3300005435 Ga0070714_100001346 Ga0070714_10000134613 282
180 3300005436 Ga0070713_100000338 Ga0070713_10000033822 282
181 3300005535 Ga0070684_100000337 Ga0070684_10000033719 282
182 3300005564 Ga0070664_100027184 Ga0070664_1000271842 282
183 3300005577 Ga0068857_100000911 Ga0068857_10000091113 282
184 3300005614 Ga0068856_100001688 Ga0068856_10000168812 282
185 3300005981 Ga0081538_10000512 Ga0081538_1000051243 282
186 3300009545 Ga0105237_10125487 Ga0105237_101254872 282
187 3300013105 Ga0157369_10009138 Ga0157369_100091384 282
188 3300013307 Ga0157372_10122692 Ga0157372_101226922 282
189 3300022467 Ga0224712_10075414 Ga0224712_100754142 282
190 3300025928 Ga0207700_10000824 Ga0207700_1000082412 282
191 3300025929 Ga0207664_10010179 Ga0207664_100101794 282
192 3300025944 Ga0207661_10000644 Ga0207661_1000064411 282
193 3300025945 Ga0207679_10037980 Ga0207679_100379803 282
194 3300026078 Ga0207702_10000572 Ga0207702_1000057229 282
195 3300026116 Ga0207674_10000316 Ga0207674_1000031621 282
196 3300037312 Ga0395899_0225052 Ga0395899_0225052_220_1155 282
197 3300037471 Ga0395905_0146835 Ga0395905_0146835_879_1814 282
198 3300046660 Ga0495625_0062713 Ga0495625_0062713_962_1828 282
199 3300047319 Ga0495674_0052686 Ga0495674_0052686_2497_3453 282
200 3300048914 Ga0496111_0049627 Ga0496111_0049627_1942_2925 282
201 3300048915 Ga0496112_0022479 Ga0496112_0022479_1656_2639 282
202 3300048918 Ga0496115_0105883 Ga0496115_0105883_349_1302 282
203 3300005468 Ga0070707_100023225 Ga0070707_1000232256 283
204 3300006195 Ga0075366_10051243 Ga0075366_100512432 283
205 3300025922 Ga0207646_10008355 Ga0207646_100083556 283
206 3300046520 Ga0495637_0024456 Ga0495637_0024456_25_876 283
207 3300047472 Ga0495686_0013303 Ga0495686_0013303_1107_1961 283
208 3300049572 Ga0501036_0292502 Ga0501036_0292502_111_1118 283
209 3300049587 Ga0501071_0389595 Ga0501071_0389595_53_1033 283
210 3300050493 nmdc:mga0k408_110210_c1 nmdc:mga0k408_110210_c1_685_1551 283
211 3300053104 Ga0500556_0001188 Ga0500556_0001188_2150_3001 283
212 3300053730 Ga0500645_006413 Ga0500645_006413_896_1747 283
213 3300003215 JGI25153J46596_10025479 JGI25153J46596_100254791 284
214 3300003771 Ga0055526_1024292 Ga0055526_10242921 284
215 3300003773 Ga0055537_1012607 Ga0055537_10126071 284
216 3300003781 Ga0055536_1002099 Ga0055536_10020997 284
217 3300003790 Ga0055528_1011583 Ga0055528_10115831 284
218 3300003791 Ga0055530_10003957 Ga0055530_100039578 284
219 3300005262 Ga0065165_1003413 Ga0065165_10034132 284
220 3300006195 Ga0075366_10011569 Ga0075366_100115695 284
221 3300025263 Ga0209565_1000234 Ga0209565_100023439 284
222 3300025273 Ga0209673_1001141 Ga0209673_100114112 284
223 3300025273 Ga0209673_1022009 Ga0209673_10220092 284
224 3300025292 Ga0209676_1000163 Ga0209676_100016395 284
225 3300025295 Ga0209564_1009415 Ga0209564_10094156 284
226 3300025297 Ga0209758_1001021 Ga0209758_100102139 284
227 3300025298 Ga0209050_1001123 Ga0209050_100112315 284
228 3300025299 Ga0209256_1008218 Ga0209256_10082187 284
229 3300025299 Ga0209256_1025805 Ga0209256_10258052 284
230 3300025303 Ga0209051_1001854 Ga0209051_100185411 284
231 3300028794 Ga0307515_10024708 Ga0307515_100247081 284
232 3300028794 Ga0307515_10165115 Ga0307515_101651153 284
233 3300042156 Ga0439446_0003748 Ga0439446_0003748_517_1437 284
234 3300046453 Ga0495627_001019 Ga0495627_001019_1774_2661 284
235 3300046457 Ga0495590_0039069 Ga0495590_0039069_305_1162 284
236 3300046460 Ga0495638_0000474 Ga0495638_0000474_34387_35262 284
237 3300046460 Ga0495638_0040246 Ga0495638_0040246_1386_2240 284
238 3300046460 Ga0495638_0047862 Ga0495638_0047862_1612_2496 284
239 3300046501 Ga0495607_0016185 Ga0495607_0016185_36_890 284
240 3300046512 Ga0495610_0000360 Ga0495610_0000360_33405_34259 284
241 3300046512 Ga0495610_0002593 Ga0495610_0002593_370_1227 284
242 3300046512 Ga0495610_0003893 Ga0495610_0003893_9390_10244 284
243 3300046513 Ga0495616_0000053 Ga0495616_0000053_41459_42313 284
244 3300046518 Ga0495631_0028911 Ga0495631_0028911_84_941 284
245 3300046519 Ga0495632_0000335 Ga0495632_0000335_9392_10246 284
246 3300046520 Ga0495637_0096686 Ga0495637_0096686_109_996 284
247 3300046524 Ga0495648_0048050 Ga0495648_0048050_552_1406 284
248 3300046542 Ga0495597_0027907 Ga0495597_0027907_1090_1959 284
249 3300046616 Ga0495668_0000100 Ga0495668_0000100_15161_16018 284
250 3300046616 Ga0495668_0002197 Ga0495668_0002197_14798_15652 284
251 3300046616 Ga0495668_0005019 Ga0495668_0005019_5280_6149 284
252 3300046616 Ga0495668_0018135 Ga0495668_0018135_501_1376 284
253 3300046660 Ga0495625_0000290 Ga0495625_0000290_69626_70498 284
254 3300046660 Ga0495625_0033130 Ga0495625_0033130_2195_3049 284
255 3300046660 Ga0495625_0194577 Ga0495625_0194577_386_1255 284
256 3300046794 Ga0495589_0007747 Ga0495589_0007747_4355_5242 284
257 3300046810 Ga0495660_0062378 Ga0495660_0062378_493_1347 284
258 3300046810 Ga0495660_0104877 Ga0495660_0104877_503_1357 284
259 3300047320 Ga0495672_0002515 Ga0495672_0002515_4644_5498 284
260 3300047323 Ga0495683_0079608 Ga0495683_0079608_615_1538 284
261 3300047469 Ga0495673_0000025 Ga0495673_0000025_429557_430444 284
262 3300047472 Ga0495686_0002668 Ga0495686_0002668_14240_15097 284
263 3300048918 Ga0496115_0067514 Ga0496115_0067514_1308_2177 284
264 3300048929 Ga0496126_0273536 Ga0496126_0273536_13_867 284
265 3300049671 Ga0501238_000932 Ga0501238_000932_653_1522 284
266 3300050493 nmdc:mga0k408_7171_c1 nmdc:mga0k408_7171_c1_1348_2202 284
267 3300053122 Ga0500608_000027 Ga0500608_000027_2959_3816 284
268 3300053123 Ga0500614_005299 Ga0500614_005299_1230_2084 284
269 3300053136 Ga0500559_0005010 Ga0500559_0005010_4013_4870 284
270 3300053142 Ga0500577_0026528 Ga0500577_0026528_65_952 284
271 3300053156 Ga0500622_0004385 Ga0500622_0004385_7982_8839 284
272 3300053156 Ga0500622_0010054 Ga0500622_0010054_2084_2950 284

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04545

Sigma70_r4

Sigma-70, region 4

130

178

0.96

PF08281

Sigma70_r4_2

Sigma-70, region 4

124

177

0.95

PF04542

Sigma70_r2

Sigma-70 region 2

24

92

0.94

PF12680

SnoaL_2

SnoaL-like domain

195

300

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
2o8x-assembly1.cif.gz_A "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.9393 100 152
5fgm-assembly1.cif.gz_A streptomyces coelicolor sigr region 4 0.9368 104 154
2o8x-assembly1.cif.gz_B "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.9329 100 152
3vep-assembly4.cif.gz_H crystal structure of sigd4 in complex with its negative regulator rsda 0.9254 104 154
2h27-assembly2.cif.gz_D crystal structure of escherichia coli sigmae region 4 bound to its-35 element dna 0.9254 101 154
ID Description Score Start End Superfamily
af_P9WGH3_4_93_1.10.1740.10 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9635 1 74 1.10.1740.10
2o8xA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9393 100 152 1.10.10.10
1or7B02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9339 101 154 1.10.10.10
2o8xB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9329 100 152 1.10.10.10
1or7A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9327 101 155 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A0Q6VI18-F1-model_v4 RNA polymerase subunit sigma 0.9461 1 279 GO:0003677
GO:0006352
GO:0016987
AF-A0A3C1CJN8-F1-model_v4 RNA polymerase sigma-70 factor 0.9354 1 282 GO:0003677
GO:0006352
GO:0016987
AF-A0A7G1KFN5-F1-model_v4 RNA polymerase sigma24 factor 0.9345 1 282 GO:0003677
GO:0006352
GO:0016987
AF-A0A4P6JN76-F1-model_v4 RNA polymerase sigma-70 factor 0.9327 4 280 GO:0003677
GO:0006352
GO:0016987
AF-A0A6L3AFW0-F1-model_v4 RNA polymerase sigma-70 factor 0.9324 6 284 GO:0003677
GO:0006352
GO:0016987

Feature Viewer

pLDDT pTM Quality
86.89 0.85 High
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Predicted Structure (AlphaFold2)

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