F373847

General Info

Members Datasets Scaffolds Average Seq Length
266 203 532 174

Family's Representative Sequence

Representative Sequence 3300005340|Ga0070689_101097995|Ga0070689_1010979952
Length 187
Sequence VRIFGIDPGSVRTGYGCVETDGGRHRLVMCGALSVAGGRASLPDRLLAIHCGLTELIAEARPDCVVIENLFHARNVRSALTLGHARGVAVLAAIQAGLPVIEYTPAEIKVAVVGYGRAEKTQVQQMVKLLLGLDTAPSPHDAADALAVAICHAHAAGGRTARPARAPRHERSWRHVRLADLPRRQAP

Samples

Sample ID Description Type Environment
1 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
2 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
3 3300004799 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
4 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
5 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
6 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
7 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
8 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
9 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
10 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
11 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
12 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
13 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
14 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
15 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
16 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
17 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
18 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
19 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
20 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
21 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
22 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
23 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
24 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
25 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
26 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
27 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
28 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
29 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
30 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
31 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
32 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
33 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
34 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
35 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
36 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
37 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
39 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
42 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
43 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
44 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
45 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
46 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
47 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
48 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
49 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
50 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
51 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
52 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
53 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
54 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
55 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
58 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
60 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
82 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
84 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
85 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
86 3300035120 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_5 Metagenome Rhizosphere
87 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
88 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
89 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
90 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
91 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
92 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
93 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
94 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
95 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
96 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
97 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
98 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
99 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
100 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
101 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
102 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
103 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
104 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
105 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
106 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
107 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
108 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
109 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
110 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
111 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
112 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
113 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
114 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
115 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
116 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
117 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
118 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
119 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
120 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
121 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
125 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
126 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
128 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
129 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
130 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
133 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
134 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
135 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
136 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
137 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
138 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
139 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
140 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
141 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
142 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
143 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
144 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
145 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
146 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
147 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
148 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
149 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
150 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
151 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
152 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
153 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
154 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
155 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
156 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
157 2512564039 Paenibacillus mucilaginosus 3016 Isolate Rhizosphere
158 2524023129 Paenibacillus pinihumi DSM 23905 Isolate Rhizosphere
159 2571042588 Paenibacillus zanthoxyli JH29 Isolate Unclassified
160 2579778775 Paenibacillus durus P3L-5 Isolate Unclassified
161 2585428059 Paenibacillus chondroitinus OK414 Isolate Rhizosphere
162 2593339198 Paenibacillus sp. UNCCL117 Isolate Unclassified
163 2619619294 Paenibacillus durus ATCC 35681 Isolate Unclassified
164 2643221676 Paenibacillus sp. Root444D2 Isolate Unclassified
165 2671180694 Paenibacillus sp. A3 Isolate Unclassified
166 2728369359 Paenibacillus polymyxa YC0136 Isolate Rhizosphere
167 2791355222 Paenibacillus oryzae 1DrF-4 Isolate Unclassified
168 2802428803 Paenibacillus peoriae NMA1017 Isolate Rhizosphere
169 2818991459 Paenibacillus sp. 597 Isolate Unclassified
170 2831905167 Ammoniphilus oxalaticus RAOx-1 Isolate Rhizosphere
171 2857453340 Paenibacillus sp. R-74130 Isolate Unclassified
172 2864997549 Paenibacillus sp. R-72005 Isolate Unclassified
173 2865002811 Paenibacillus sp. R-74131 Isolate Unclassified
174 2881636855 Paenibacillus sp. 7197 Isolate Rhizosphere
175 2888578766 Paenibacillus lycopersici 12200R-189 Isolate Rhizosphere
176 2889049205 Paenibacillus rhizovicinus 14171R-81 Isolate Rhizosphere
177 2889276214 Paenibacillus sp. PvR133 Isolate Rhizosphere
178 2889295896 Paenibacillus sp. PvR098 Isolate Rhizosphere
179 2904113452 Paenibacillus paridis py1325 Isolate Unclassified
180 2904595352 Paenibacillus sp. 1182 Isolate Unclassified
181 2904755435 Paenibacillus aceris KACC 19194 Isolate Rhizosphere
182 2907202186 Paenibacillus sp. HJL G12 Isolate Unclassified
183 2919425241 Bacillus sp. 3255 Isolate Rhizosphere
184 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
185 2929206907 Paenibacillus sp. R-74146 Hybrid assembly Isolate Unclassified
186 2939702853 Paenibacillus sp. PvR008 Isolate Rhizosphere
187 2971410472 Paenibacillus oryzisoli 1ZS3-15 Isolate Unclassified
188 2980125574 Paenibacillus sp. tmac-D7 Isolate Unclassified
189 2980182181 Paenibacillus cymbidii R196 Isolate Unclassified
190 2981284811 Paenibacillus sp. PvR052 Isolate Rhizosphere
191 2981289755 Paenibacillus sp. PvR148 Isolate Rhizosphere
192 2981980479 Paenibacillus sp. PvR018 Isolate Rhizosphere
193 2981985349 Paenibacillus sp. PvR053 Isolate Rhizosphere
194 2996706504 Paenibacillus sp. OT2-17 Isolate Rhizosphere
195 648028048 Paenibacillus polymyxa E681 Isolate Rhizosphere
196 8002317523 Cohnella sp. GbtcB17 Isolate Unclassified
197 8046991243 Cohnella rhizosphaerae DSM 28161 Isolate Rhizosphere
198 8054795415 Paenibacillus periandrae PM10 Isolate Nodule
199 8055632911 Paenibacillus radicibacter N1-5-1-14 Isolate Unclassified
200 8056533031 Paenibacillus qinlingensis TEGT-2 Isolate Unclassified
201 8057473075 Paenibacillus endoradicis T3-5-0-4 Isolate Unclassified
202 8057733483 Paenibacillus apiarius MW-14 Isolate Rhizosphere
203 8057977335 Paenibacillus oenotherae DT7-4 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 80.45
Metatranscriptomes 1.5
Isolates 18.05

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.76
Nodule 0.38
Rhizoplane 0.75
Rhizosphere 79.7
Stem 0
Stem Tuber 0
Unclassified 4.14

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070689_101097995 3300005340 Bacteria 711
2 Ga0055541_1001328 3300003841 Bacteria 5396
3 Ga0058863_10964056 3300004799 Bacteria 548
4 Ga0065704_10125960 3300005289 Bacteria 1696
5 Ga0065712_10105275 3300005290 Bacteria 1943
6 Ga0065715_10038228 3300005293 Bacteria 1491
7 Ga0070658_10002372 3300005327 Bacteria 15809
8 Ga0070690_100513105 3300005330 Bacteria 899
9 Ga0070670_100126508 3300005331 Bacteria 2206
10 Ga0070670_101482833 3300005331 Bacteria 623
11 Ga0070677_10215453 3300005333 Bacteria 935
12 Ga0068869_100138468 3300005334 Unclassified 1877
13 Ga0070682_100000001 3300005337 Bacteria 569837
14 Ga0068868_100007123 3300005338 Bacteria 7952
15 Ga0070689_100211345 3300005340 Bacteria 1588
16 Ga0070669_100080027 3300005353 Bacteria 2431
17 Ga0070669_100546921 3300005353 Archaea 965
18 Ga0070675_100064924 3300005354 Bacteria 3018
19 Ga0070673_101181688 3300005364 Bacteria 716
20 Ga0070667_100107021 3300005367 Unclassified 2421
21 Ga0070701_10091783 3300005438 Bacteria 1665
22 Ga0070705_100381799 3300005440 Bacteria 1037
23 Ga0070708_100124798 3300005445 Bacteria 2378
24 Ga0068867_100294336 3300005459 Bacteria 1336
25 Ga0070706_100247996 3300005467 Bacteria 1663
26 Ga0070707_100100462 3300005468 Unclassified 2803
27 Ga0070672_100000024 3300005543 Bacteria 68001
28 Ga0070672_100585142 3300005543 Bacteria 971
29 Ga0070686_100101555 3300005544 Bacteria 1944
30 Ga0070686_100651739 3300005544 Bacteria 835
31 Ga0070702_100146298 3300005615 Bacteria 1511
32 Ga0068864_100000117 3300005618 Bacteria 78069
33 Ga0068861_100547778 3300005719 Bacteria 1054
34 Ga0068863_100606406 3300005841 Bacteria 1084
35 Ga0068858_100255519 3300005842 Unclassified 1665
36 Ga0068860_100120977 3300005843 Bacteria 2507
37 Ga0075434_100000097 3300006871 Bacteria 48724
38 Ga0068865_100131724 3300006881 Bacteria 1874
39 Ga0075436_100000341 3300006914 Bacteria 29776
40 Ga0075435_100000149 3300007076 Bacteria 39747
41 Ga0075435_100041034 3300007076 Bacteria 3698
42 Ga0105240_10213891 3300009093 Bacteria 2251
43 Ga0111539_10001146 3300009094 Bacteria 34999
44 Ga0111539_10133652 3300009094 Bacteria 2905
45 Ga0111539_10318995 3300009094 Bacteria 1809
46 Ga0105245_10000021 3300009098 Bacteria 181628
47 Ga0105245_10571168 3300009098 Bacteria 1155
48 Ga0105243_10323629 3300009148 Bacteria 1406
49 Ga0105248_10016732 3300009177 Bacteria 8075
50 Ga0105249_10146581 3300009553 Bacteria 2269
51 Ga0105249_10185768 3300009553 Bacteria 2025
52 Ga0105239_10028821 3300010375 Bacteria 6104
53 Ga0157371_10090601 3300013102 Bacteria 2166
54 Ga0157374_10096357 3300013296 Bacteria 2830
55 Ga0157378_10136504 3300013297 Bacteria 2274
56 Ga0157378_10644844 3300013297 Bacteria 1074
57 Ga0157375_10000001 3300013308 Bacteria 696576
58 Ga0163163_10000023 3300014325 Bacteria 185843
59 Ga0157380_10032902 3300014326 Bacteria 3990
60 Ga0157380_10127206 3300014326 Bacteria 2168
61 Ga0157377_10290885 3300014745 Bacteria 1074
62 Ga0157376_10370820 3300014969 Bacteria 1376
63 Ga0206356_10120748 3300020070 Bacteria 548
64 Ga0206350_11367651 3300020080 Bacteria 1506
65 Ga0213876_10093761 3300021384 Unclassified 1590
66 Ga0224712_10127936 3300022467 Bacteria 1106
67 Ga0209566_100049 3300025225 Bacteria 240746
68 Ga0209566_100185 3300025225 Bacteria 65592
69 Ga0209566_100420 3300025225 Bacteria 32807
70 Ga0209147_100250 3300025229 Bacteria 51192
71 Ga0209675_1002058 3300025291 Bacteria 10736
72 Ga0209676_1019368 3300025292 Bacteria 2342
73 Ga0209025_1003525 3300025294 Bacteria 14689
74 Ga0209025_1032238 3300025294 Bacteria 2455
75 Ga0207682_10227894 3300025893 Bacteria 863
76 Ga0207705_10006811 3300025909 Bacteria 8443
77 Ga0207684_10979601 3300025910 Bacteria 708
78 Ga0207654_10175848 3300025911 Bacteria 1393
79 Ga0207681_10442105 3300025923 Archaea 1057
80 Ga0207659_10198273 3300025926 Bacteria 1601
81 Ga0207687_10000002 3300025927 Bacteria 975489
82 Ga0207687_10489202 3300025927 Bacteria 1025
83 Ga0207709_10384986 3300025935 Bacteria 1068
84 Ga0207670_10187567 3300025936 Bacteria 1562
85 Ga0207670_10785323 3300025936 Bacteria 793
86 Ga0207704_10159713 3300025938 Unclassified 1602
87 Ga0207691_10001657 3300025940 Bacteria 22037
88 Ga0207711_10096517 3300025941 Bacteria 2609
89 Ga0207711_10346420 3300025941 Bacteria 1375
90 Ga0207689_10110604 3300025942 Unclassified 2258
91 Ga0207712_10105942 3300025961 Bacteria 2099
92 Ga0207712_10462915 3300025961 Bacteria 1078
93 Ga0207658_10105861 3300025986 Unclassified 2213
94 Ga0207677_10000090 3300026023 Bacteria 74352
95 Ga0207703_10235192 3300026035 Bacteria 1644
96 Ga0207703_10635341 3300026035 Bacteria 1012
97 Ga0207648_10150582 3300026089 Bacteria 2053
98 Ga0207648_10320975 3300026089 Bacteria 1392
99 Ga0207676_10000323 3300026095 Bacteria 41181
100 Ga0207674_10010465 3300026116 Bacteria 10502
101 Ga0207675_100738028 3300026118 Bacteria 995
102 Ga0207428_10020023 3300027907 Bacteria 5697
103 Ga0207428_10064360 3300027907 Bacteria 2895
104 Ga0207428_10251005 3300027907 Bacteria 1319
105 Ga0268264_10052704 3300028381 Bacteria 3393
106 Ga0373934_0000502 3300035086 Bacteria 13724
107 Ga0373953_0037068 3300035117 Bacteria 1923
108 Ga0373956_0002305 3300035119 Bacteria 7847
109 Ga0373957_0006583 3300035120 Bacteria 3669
110 Ga0373955_0001878 3300035172 Bacteria 9053
111 Ga0373937_0000304 3300036401 Bacteria 46720
112 Ga0395899_0061147 3300037312 Bacteria 2774
113 Ga0400489_19117 3300039093 Bacteria 1192
114 Ga0436365_0141100 3300039437 Bacteria 115776
115 Ga0436365_1362123 3300039437 Unclassified 3820
116 Ga0436362_1113287 3300039453 Bacteria 5616
117 Ga0439436_0004370 3300041404 Bacteria 4330
118 Ga0439439_0008247 3300041406 Bacteria 2455
119 Ga0451853_1840409 3300041512 Bacteria 1429
120 Ga0439433_0002659 3300041999 Bacteria 3797
121 Ga0439449_0014546 3300042007 Bacteria 2958
122 Ga0439457_017840 3300042014 Bacteria 1575
123 Ga0439462_0000197 3300042015 Bacteria 10426
124 Ga0439462_0006738 3300042015 Bacteria 2867
125 Ga0466969_0000558 3300044656 Bacteria 20450
126 Ga0466966_0027319 3300044684 Bacteria 3722
127 Ga0466961_0001808 3300044693 Bacteria 13261
128 Ga0453684_1594500 3300044712 Bacteria 670
129 Ga0466968_0000684 3300044735 Bacteria 11682
130 Ga0466959_0002689 3300045049 Bacteria 11420
131 Ga0451576_0013998 3300045051 Bacteria 8945
132 Ga0466967_1708418 3300045976 Bacteria 627
133 Ga0495635_0571090 3300046663 Bacteria 740
134 Ga0495661_0199333 3300046665 Bacteria 1049
135 Ga0495680_0060393 3300047322 Bacteria 2922
136 Ga0495681_0291219 3300047470 Bacteria 634
137 Ga0496104_0468177 3300048907 Bacteria 1172
138 Ga0496114_0898518 3300048917 Bacteria 767
139 Ga0496116_0004484 3300048919 Bacteria 13295
140 Ga0496116_0019651 3300048919 Bacteria 5164
141 Ga0496121_0488093 3300048924 Bacteria 785
142 Ga0496122_0023537 3300048925 Bacteria 5425
143 Ga0496122_0025043 3300048925 Bacteria 5200
144 Ga0496122_0087056 3300048925 Bacteria 2147
145 Ga0496123_0077911 3300048926 Bacteria 2033
146 Ga0496123_0307251 3300048926 Bacteria 754
147 Ga0496124_0002397 3300048927 Bacteria 24659
148 Ga0496125_0002021 3300048928 Bacteria 27481
149 Ga0496126_1001837 3300048929 Bacteria 627
150 Ga0501032_0078460 3300049569 Bacteria 2198
151 Ga0501032_0363463 3300049569 Bacteria 931
152 Ga0501033_0342191 3300049570 Bacteria 1048
153 Ga0501034_0005356 3300049571 Bacteria 14048
154 Ga0501034_0714713 3300049571 Bacteria 899
155 Ga0501036_0124740 3300049572 Bacteria 2174
156 Ga0501036_0157781 3300049572 Bacteria 1913
157 Ga0501037_0251541 3300049573 Bacteria 1236
158 Ga0501038_0110687 3300049574 Bacteria 2275
159 Ga0501038_0154045 3300049574 Bacteria 1872
160 Ga0501039_0241084 3300049575 Bacteria 1421
161 Ga0501039_0894720 3300049575 Bacteria 691
162 Ga0501042_0119765 3300049578 Bacteria 1895
163 Ga0501042_0432759 3300049578 Bacteria 954
164 Ga0501043_0235664 3300049579 Bacteria 1412
165 Ga0501043_0287365 3300049579 Bacteria 1259
166 Ga0501046_0014479 3300049580 Bacteria 6654
167 Ga0501046_0255228 3300049580 Bacteria 1289
168 Ga0501046_0381195 3300049580 Bacteria 1020
169 Ga0501047_0088501 3300049581 Bacteria 2973
170 Ga0501047_0116263 3300049581 Bacteria 2556
171 Ga0501047_0661403 3300049581 Bacteria 863
172 Ga0501048_0133975 3300049582 Bacteria 1750
173 Ga0501067_0113548 3300049583 Bacteria 1506
174 Ga0501067_0242338 3300049583 Bacteria 1003
175 Ga0501068_0040839 3300049584 Bacteria 2786
176 Ga0501069_0027751 3300049585 Bacteria 3103
177 Ga0501071_0098567 3300049587 Bacteria 2153
178 Ga0501072_0077689 3300049588 Bacteria 2628
179 Ga0501072_0470822 3300049588 Bacteria 994
180 Ga0501073_0151972 3300049589 Bacteria 1604
181 Ga0501073_0251989 3300049589 Bacteria 1218
182 Ga0501073_0301434 3300049589 Bacteria 1105
183 Ga0501073_0469951 3300049589 Bacteria 869
184 Ga0501075_0533078 3300049591 Bacteria 896
185 Ga0501076_0359502 3300049592 Bacteria 1196
186 Ga0501076_0740124 3300049592 Bacteria 811
187 Ga0501077_0266670 3300049593 Bacteria 1089
188 Ga0501077_0705620 3300049593 Bacteria 648
189 Ga0501079_0295332 3300049741 Bacteria 1267
190 Ga0501080_0452061 3300049742 Bacteria 1151
191 Ga0501080_0838079 3300049742 Bacteria 804
192 Ga0501081_0209016 3300049743 Bacteria 1417
193 Ga0501081_0240437 3300049743 Bacteria 1320
194 Ga0501083_0027632 3300049744 Bacteria 3913
195 Ga0501083_0133586 3300049744 Bacteria 1626
196 Ga0501035_0071193 3300049822 Bacteria 3079
197 Ga0501035_0248347 3300049822 Bacteria 1512
198 Ga0501044_0281513 3300049823 Bacteria 1596
199 Ga0501044_1033868 3300049823 Bacteria 692
200 Ga0501045_0236644 3300049824 Bacteria 1359
201 nmdc:mga00v17_25075_c1 3300050491 Bacteria 3463
202 nmdc:mga08y16_29258_c1 3300050511 Bacteria 5805
203 nmdc:mga08y16_56021_c1 3300050511 Bacteria 4121
204 nmdc:mga08y16_65734_c1 3300050511 Bacteria 3785
205 nmdc:mga0n895_16030_c1 3300050512 Bacteria 6864
206 nmdc:mga0rr50_113418_c1 3300050513 Bacteria 2148
207 nmdc:mga0rr50_28_c1 3300050513 Bacteria 108950
208 nmdc:mga08x19_121_c1 3300050514 Bacteria 69968
209 nmdc:mga08x19_207006_c1 3300050514 Bacteria 1346
210 Ga0501084_0046698 3300054114 Bacteria 3627
211 Ga0501084_0413292 3300054114 Bacteria 1140
212 Ga0501082_0085997 3300060353 Bacteria 2712
213 Ga0501082_0789828 3300060353 Bacteria 830
214 Ga0501082_1121817 3300060353 Bacteria 687
215 Ga0530510_0092276 3300061734 Bacteria 2210
216 Ga0530510_0133320 3300061734 Bacteria 1828
217 Ga0530510_0353309 3300061734 Unclassified 1104
218 Ga0530510_0555799 3300061734 Unclassified 872
219 2512735459 2512564039 Bacteria 8739048
220 2524186829 2524023129 Bacteria 6762600
221 2573038378 2571042588 Bacteria 5045676
222 2580931783 2579778775 Bacteria 5360914
223 2587740460 2585428059 Bacteria 8696589
224 2595320971 2593339198 Bacteria 7267884
225 2621276579 2619619294 Bacteria 5575484
226 2644426642 2643221676 Bacteria 8119172
227 2673822024 2671180694 Bacteria 7506943
228 2730136175 2728369359 Bacteria 5621728
229 2793183836 2791355222 Bacteria 5898266
230 2802438525 2802428803 Bacteria 5806948
231 2819672867 2818991459 Bacteria 8736032
232 2831906673 2831905167 Bacteria 3319172
233 2857456596 2857453340 Bacteria 8090534
234 2865002558 2864997549 Bacteria 5139696
235 2865003213 2865002811 Bacteria 6333767
236 2881641081 2881636855 Bacteria 5205297
237 2888582909 2888578766 Bacteria 6743310
238 2889054891 2889049205 Bacteria 7524325
239 2889281462 2889276214 Bacteria 5979355
240 2889300711 2889295896 Bacteria 4704906
241 2904117311 2904113452 Bacteria 7796941
242 2904599131 2904595352 Bacteria 6124848
243 2904756257 2904755435 Bacteria 7986759
244 2907206083 2907202186 Bacteria 6632024
245 2919428812 2919425241 Bacteria 8055701
246 2925330760 2925326138 Bacteria 9652120
247 2929210881 2929206907 Bacteria 5918291
248 2939708016 2939702853 Bacteria 5139229
249 2971414096 2971410472 Bacteria 8311090
250 2980130146 2980125574 Bacteria 5567337
251 2980185147 2980182181 Bacteria 9454109
252 2981287370 2981284811 Bacteria 4641497
253 2981294297 2981289755 Bacteria 4641509
254 2981983215 2981980479 Bacteria 4641628
255 2981988129 2981985349 Bacteria 4641497
256 2996707232 2996706504 Bacteria 5757485
257 648171547 648028048 Bacteria 5394884
258 8002322061 8002317523 Bacteria 8051857
259 8046999508 8046991243 Bacteria 8497463
260 8054800267 8054795415 Bacteria 9785225
261 8055637571 8055632911 Bacteria 5283357
262 8056539175 8056533031 Bacteria 8964429
263 8057473473 8057473075 Bacteria 5892720
264 8057475923 8057473075 Bacteria 5892720
265 8057737325 8057733483 Bacteria 6578323
266 8057977619 8057977335 Bacteria 5694872
267 Ga0070689_101097995
268 Ga0055541_1001328
269 Ga0058863_10964056
270 Ga0065704_10125960
271 Ga0065712_10105275
272 Ga0065715_10038228
273 Ga0070658_10002372
274 Ga0070690_100513105
275 Ga0070670_100126508
276 Ga0070670_101482833
277 Ga0070677_10215453
278 Ga0068869_100138468
279 Ga0070682_100000001
280 Ga0068868_100007123
281 Ga0070689_100211345
282 Ga0070669_100080027
283 Ga0070669_100546921
284 Ga0070675_100064924
285 Ga0070673_101181688
286 Ga0070667_100107021
287 Ga0070701_10091783
288 Ga0070705_100381799
289 Ga0070708_100124798
290 Ga0068867_100294336
291 Ga0070706_100247996
292 Ga0070707_100100462
293 Ga0070672_100000024
294 Ga0070672_100585142
295 Ga0070686_100101555
296 Ga0070686_100651739
297 Ga0070702_100146298
298 Ga0068864_100000117
299 Ga0068861_100547778
300 Ga0068863_100606406
301 Ga0068858_100255519
302 Ga0068860_100120977
303 Ga0075434_100000097
304 Ga0068865_100131724
305 Ga0075436_100000341
306 Ga0075435_100000149
307 Ga0075435_100041034
308 Ga0105240_10213891
309 Ga0111539_10001146
310 Ga0111539_10133652
311 Ga0111539_10318995
312 Ga0105245_10000021
313 Ga0105245_10571168
314 Ga0105243_10323629
315 Ga0105248_10016732
316 Ga0105249_10146581
317 Ga0105249_10185768
318 Ga0105239_10028821
319 Ga0157371_10090601
320 Ga0157374_10096357
321 Ga0157378_10136504
322 Ga0157378_10644844
323 Ga0157375_10000001
324 Ga0163163_10000023
325 Ga0157380_10032902
326 Ga0157380_10127206
327 Ga0157377_10290885
328 Ga0157376_10370820
329 Ga0206356_10120748
330 Ga0206350_11367651
331 Ga0213876_10093761
332 Ga0224712_10127936
333 Ga0209566_100049
334 Ga0209566_100185
335 Ga0209566_100420
336 Ga0209147_100250
337 Ga0209675_1002058
338 Ga0209676_1019368
339 Ga0209025_1003525
340 Ga0209025_1032238
341 Ga0207682_10227894
342 Ga0207705_10006811
343 Ga0207684_10979601
344 Ga0207654_10175848
345 Ga0207681_10442105
346 Ga0207659_10198273
347 Ga0207687_10000002
348 Ga0207687_10489202
349 Ga0207709_10384986
350 Ga0207670_10187567
351 Ga0207670_10785323
352 Ga0207704_10159713
353 Ga0207691_10001657
354 Ga0207711_10096517
355 Ga0207711_10346420
356 Ga0207689_10110604
357 Ga0207712_10105942
358 Ga0207712_10462915
359 Ga0207658_10105861
360 Ga0207677_10000090
361 Ga0207703_10235192
362 Ga0207703_10635341
363 Ga0207648_10150582
364 Ga0207648_10320975
365 Ga0207676_10000323
366 Ga0207674_10010465
367 Ga0207675_100738028
368 Ga0207428_10020023
369 Ga0207428_10064360
370 Ga0207428_10251005
371 Ga0268264_10052704
372 Ga0373934_0000502
373 Ga0373953_0037068
374 Ga0373956_0002305
375 Ga0373957_0006583
376 Ga0373955_0001878
377 Ga0373937_0000304
378 Ga0395899_0061147
379 Ga0400489_19117
380 Ga0436365_0141100
381 Ga0436365_1362123
382 Ga0436362_1113287
383 Ga0439436_0004370
384 Ga0439439_0008247
385 Ga0451853_1840409
386 Ga0439433_0002659
387 Ga0439449_0014546
388 Ga0439457_017840
389 Ga0439462_0000197
390 Ga0439462_0006738
391 Ga0466969_0000558
392 Ga0466966_0027319
393 Ga0466961_0001808
394 Ga0453684_1594500
395 Ga0466968_0000684
396 Ga0466959_0002689
397 Ga0451576_0013998
398 Ga0466967_1708418
399 Ga0495635_0571090
400 Ga0495661_0199333
401 Ga0495680_0060393
402 Ga0495681_0291219
403 Ga0496104_0468177
404 Ga0496114_0898518
405 Ga0496116_0004484
406 Ga0496116_0019651
407 Ga0496121_0488093
408 Ga0496122_0023537
409 Ga0496122_0025043
410 Ga0496122_0087056
411 Ga0496123_0077911
412 Ga0496123_0307251
413 Ga0496124_0002397
414 Ga0496125_0002021
415 Ga0496126_1001837
416 Ga0501032_0078460
417 Ga0501032_0363463
418 Ga0501033_0342191
419 Ga0501034_0005356
420 Ga0501034_0714713
421 Ga0501036_0124740
422 Ga0501036_0157781
423 Ga0501037_0251541
424 Ga0501038_0110687
425 Ga0501038_0154045
426 Ga0501039_0241084
427 Ga0501039_0894720
428 Ga0501042_0119765
429 Ga0501042_0432759
430 Ga0501043_0235664
431 Ga0501043_0287365
432 Ga0501046_0014479
433 Ga0501046_0255228
434 Ga0501046_0381195
435 Ga0501047_0088501
436 Ga0501047_0116263
437 Ga0501047_0661403
438 Ga0501048_0133975
439 Ga0501067_0113548
440 Ga0501067_0242338
441 Ga0501068_0040839
442 Ga0501069_0027751
443 Ga0501071_0098567
444 Ga0501072_0077689
445 Ga0501072_0470822
446 Ga0501073_0151972
447 Ga0501073_0251989
448 Ga0501073_0301434
449 Ga0501073_0469951
450 Ga0501075_0533078
451 Ga0501076_0359502
452 Ga0501076_0740124
453 Ga0501077_0266670
454 Ga0501077_0705620
455 Ga0501079_0295332
456 Ga0501080_0452061
457 Ga0501080_0838079
458 Ga0501081_0209016
459 Ga0501081_0240437
460 Ga0501083_0027632
461 Ga0501083_0133586
462 Ga0501035_0071193
463 Ga0501035_0248347
464 Ga0501044_0281513
465 Ga0501044_1033868
466 Ga0501045_0236644
467 nmdc:mga00v17_25075_c1
468 nmdc:mga08y16_29258_c1
469 nmdc:mga08y16_56021_c1
470 nmdc:mga08y16_65734_c1
471 nmdc:mga0n895_16030_c1
472 nmdc:mga0rr50_113418_c1
473 nmdc:mga0rr50_28_c1
474 nmdc:mga08x19_121_c1
475 nmdc:mga08x19_207006_c1
476 Ga0501084_0046698
477 Ga0501084_0413292
478 Ga0501082_0085997
479 Ga0501082_0789828
480 Ga0501082_1121817
481 Ga0530510_0092276
482 Ga0530510_0133320
483 Ga0530510_0353309
484 Ga0530510_0555799
485 2512735459
486 2524186829
487 2573038378
488 2580931783
489 2587740460
490 2595320971
491 2621276579
492 2644426642
493 2673822024
494 2730136175
495 2793183836
496 2802438525
497 2819672867
498 2831906673
499 2857456596
500 2865002558
501 2865003213
502 2881641081
503 2888582909
504 2889054891
505 2889281462
506 2889300711
507 2904117311
508 2904599131
509 2904756257
510 2907206083
511 2919428812
512 2925330760
513 2929210881
514 2939708016
515 2971414096
516 2980130146
517 2980185147
518 2981287370
519 2981294297
520 2981983215
521 2981988129
522 2996707232
523 648171547
524 8002322061
525 8046999508
526 8054800267
527 8055637571
528 8056539175
529 8057473473
530 8057475923
531 8057737325
532 8057977619

MSA Aligner

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02075

RuvC

Crossover junction endodeoxyribonuclease RuvC

3

152

0.98

Structural Annotation

Top 5 Hits

ID Description Score Start End
6lw3-assembly1.cif.gz_B crystal structure of ruvc from pseudomonas aeruginosa 0.9694 16 168
7xhj-assembly1.cif.gz_A crystal structure of ruvc from deinococcus radiodurans 0.9609 16 169
6s16-assembly1.cif.gz_A t. thermophilus ruvc in complex with holliday junction substrate 0.9518 16 173
1hjr-assembly2.cif.gz_D atomic structure of the ruvc resolvase: a holliday junction-specific endonuclease from e. coli 0.9516 17 171
6lw3-assembly1.cif.gz_B crystal structure of ruvc from pseudomonas aeruginosa 0.951 16 168
ID Description Score Start End Superfamily
af_P9WGV9_1_161_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9742 16 174 3.30.420.10
af_P9WGV9_1_161_3.30.420.10 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9565 16 174 3.30.420.10
1hjrC00 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9555 17 171 3.30.420.10
4ld0B00 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9428 16 172 3.30.420.10
1hjrC00 Alpha Beta;2-Layer Sandwich;Nucleotidyltransferase; domain 5;Ribonuclease H-like superfamily/Ribonuclease H 0.9203 17 171 3.30.420.10
ID Description Score Start End GO Terms
AF-A0A2H0P7L5-F1-model_v4 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.21.10) (Holliday junction nuclease RuvC) (Holliday junction resolvase RuvC) 0.9933 16 167 GO:0000287
GO:0003677
GO:0005737
GO:0006281
GO:0006310
GO:0008821
GO:0048476
AF-A0A316RNV5-F1-model_v4 deleted 0.9925 16 170
AF-A0A3D2GD32-F1-model_v4 deleted 0.9913 16 169
AF-A0A7V6W6Y5-F1-model_v4 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.21.10) 0.9899 16 149 GO:0003677
GO:0006281
GO:0006310
GO:0008821
GO:0046872
AF-A0A329MTC4-F1-model_v4 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.21.10) (Holliday junction nuclease RuvC) (Holliday junction resolvase RuvC) 0.9892 16 178 GO:0000287
GO:0003677
GO:0005737
GO:0006281
GO:0006310
GO:0008821
GO:0048476

Map