F373733

General Info

Members Datasets Scaffolds Average Seq Length
265 192 207 764

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8056037122|8056038953
Length 861
Sequence EAGGDALPDETPDELESAAVEVDRLTTRILELRDQYYEQNASTVSDQEYDALVRQLDELEHEHPELRSQDSPTQTVGGRAVTTMFTPVTHAERMLSLDNVFSEEELDEWATKVQRDAGRGVVRFLSELKIDGLAINLRYENGVLVTAATRGDGVVGEDVTENVLQIDSIPARLKGSGHPSLVEVRGEIFFPVASFDELNAAQEAAGERVFANPRNAAAGSLRQKSEGKNERQLALVAARLHRLRMLVHGIGAWPDPPVAAQSEVYGLLAEWGLPTSTHYRVFDTVGEVAEFIRSYGINRSSVEHQIDGIVVKVDDLALHDELGATSRAPRWATAYKYPPEEVNTKLLDIVVSVGRTGRATPFAVMEKVEVAGSEVRQATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEVLGPVVELRDGSEYAFVMPENCPECGTRLAPAKEGDIDLRCPNARSCPAQVRGRVEHVGSRGALDIEGLGEVSAAALTQPSEPAEPPLDTEAGLFSLEMRDLFPIRVIVRDNETGLEKLNDDGTPKLVTPFRRKRRVSGRDADPAHDPEATEFWGDAGSVPSSNAIELLANIEKAKTKPLWRILVSLSIRHVGPVAARALADYFGSLDAIRAATRDELAAVDGVGGIIADALIAWFEVDWHVEILDRWAAAGVQFATPGHPGPGANVGAGGVLEGITVVATGSLEGFTREGAQEAIIAAGGKAASSVSKKTDFVAAGPGAGSKLPKAEALGLRIIDAAQFALLVTEGPAALGPPPGADPGDADPAGSIPPTAGDDAAPAGSIPPAASNDAVPASAEAGATPTKPRAKRAPRAKKPTTPAPSPDDEAAIGEAATGEASVDEAVVDLAAADGNER

Samples

Sample ID Description Type Environment
1 2585428094 Herbiconiux sp. YR403 Isolate Rhizosphere
2 2585428157 Microbacterium sp. CF335 Isolate Rhizosphere
3 2643221549 Agromyces sp. Root1464 Isolate Unclassified
4 2643221566 Microbacterium sp. Root166 Isolate Unclassified
5 2643221572 Leifsonia sp. Root60 Isolate Unclassified
6 2643221597 Microbacterium sp. Root180 Isolate Unclassified
7 2643221616 Leifsonia sp. Root227 Isolate Unclassified
8 2643221619 Agromyces sp. Root81 Isolate Unclassified
9 2643221632 Leifsonia sp. Root112D2 Isolate Unclassified
10 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
11 2751185788 Curtobacterium pusillum AA3 Isolate Unclassified
12 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
13 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
14 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
15 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
16 2808606372 Agromyces sp. 23-23 Isolate Unclassified
17 2808606447 Microbacterium sp. HAR-UPW-R2A-48 Isolate Unclassified
18 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
19 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
20 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
21 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
22 2844852863 Herbiconiux flava DSM 26474 Isolate Rhizosphere
23 2852632344 Microbacterium sp. AK009 Isolate Rhizosphere
24 2852643534 Leifsonia sp. AK011 Isolate Rhizosphere
25 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
26 2857733635 Salinibacterium sp. R-73062 Isolate Unclassified
27 2857737099 Lysinimonas sp. R-73066 Isolate Unclassified
28 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
29 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
30 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
31 2884763398 Leifsonia sp. PS1209 Isolate Stem Tuber
32 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
33 2904430863 Curtobacterium oceanosedimentum 1519 Isolate Rhizosphere
34 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
35 2908674828 Curtobacterium sp. 1517 Isolate Rhizosphere
36 2909074476 Curtobacterium sp. 1310 Isolate Rhizosphere
37 2919039151 Curtobacterium sp. 260 Isolate Rhizosphere
38 2919042368 Curtobacterium sp. 320 Isolate Rhizosphere
39 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
40 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
41 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
42 2928104781 Curtobacterium sp. 1544 Isolate Rhizosphere
43 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
44 2928153084 Leifsonia sp. 563 Isolate Unclassified
45 2928500415 Curtobacterium oceanosedimentum 1257 Isolate Rhizosphere
46 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
47 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
48 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
49 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere
50 2984551494 Curtobacterium sp. SORGH_AS776 Isolate Aerial Root
51 2984592036 Aeromicrobium sp. SORGH_AS981 Isolate Aerial Root
52 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
53 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
54 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
55 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
56 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
57 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
58 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
59 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
60 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
61 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
62 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
63 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
64 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
65 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
66 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
67 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
68 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
69 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
70 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
71 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
72 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
73 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
74 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
75 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
76 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
77 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
78 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
79 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
80 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
81 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
82 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
83 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
84 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
85 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
86 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
87 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
88 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
89 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
90 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
91 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
92 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
93 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
94 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
95 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
96 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
97 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
98 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
99 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
100 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
101 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
111 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
113 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
114 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
115 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
116 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
117 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
118 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
119 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
120 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
121 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
122 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
123 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
124 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
125 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
126 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
127 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
128 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
129 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
130 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
131 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
132 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
133 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
134 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
135 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
136 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
137 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
138 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
139 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
140 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
141 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
142 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
143 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
144 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
145 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
146 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
147 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
148 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
149 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
150 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
151 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
152 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
153 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
154 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
155 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
156 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
157 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
158 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
159 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
160 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
161 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
162 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
163 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
164 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
165 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
166 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
167 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
168 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
169 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
170 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
171 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
172 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
173 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
174 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
175 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
176 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
177 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
178 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
179 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
180 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
181 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
182 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
183 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
184 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
185 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
186 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
187 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
188 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
189 8046352972 Agromyces mangrovi NBRC 112812 Isolate Rhizosphere
190 8055034563 Leucobacter allii H21R-40 Isolate Rhizosphere
191 8056037122 Herbiconiux gentiana CPCC 205716 Isolate Rhizosphere
192 8057345674 Herbiconiux aconitum CPCC 205763 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 76.23
Metatranscriptomes 1.89
Isolates 21.89

Biome Distribution

Category Percentage (%)
Aerial Root 0.75
Bulb 0
Endosphere 18.87
Nodule 0
Rhizoplane 3.02
Rhizosphere 51.7
Stem 0
Stem Tuber 0.38
Unclassified 25.28

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25164J39214_1001093 3300002772 Bacteria 7831
2 JGI25165J46597_1000002 3300003214 Bacteria 765387
3 Ga0006562J51391_1026734 3300003578 Bacteria 6080
4 Ga0055539_1000058 3300003752 Bacteria 149354
5 Ga0055533_1000001 3300003756 Bacteria 1863437
6 Ga0055525_1000180 3300003759 Bacteria 78601
7 Ga0055527_1000012 3300003760 Bacteria 348744
8 Ga0055542_1000017 3300003762 Bacteria 348744
9 Ga0055529_1000023 3300003763 Bacteria 314383
10 Ga0070658_10004973 3300005327 Bacteria 10833
11 Ga0070658_10031565 3300005327 Bacteria 4254
12 Ga0070659_100000149 3300005366 Bacteria 53509
13 Ga0070663_100029028 3300005455 Bacteria 3774
14 Ga0070681_10065050 3300005458 Bacteria 3616
15 Ga0070706_100006165 3300005467 Bacteria 11341
16 Ga0070707_100000181 3300005468 Bacteria 62074
17 Ga0070698_100004762 3300005471 Bacteria 14891
18 Ga0068855_100002405 3300005563 Bacteria 23088
19 Ga0068855_100031290 3300005563 Bacteria 6355
20 Ga0068857_100000219 3300005577 Bacteria 37769
21 Ga0068852_100005903 3300005616 Bacteria 8804
22 Ga0068864_100081619 3300005618 Bacteria 2835
23 Ga0068851_10000014 3300005834 Bacteria 151675
24 Ga0068858_100000893 3300005842 Bacteria 30963
25 Ga0081540_1002638 3300005983 Bacteria 14577
26 Ga0075365_10004965 3300006038 Bacteria 7120
27 Ga0075365_10006540 3300006038 Bacteria 6421
28 Ga0075364_10016386 3300006051 Bacteria 4610
29 Ga0105240_10013606 3300009093 Bacteria 11163
30 Ga0105245_10022823 3300009098 Bacteria 5490
31 Ga0105243_10012866 3300009148 Bacteria 6322
32 Ga0105237_10000133 3300009545 Bacteria 104324
33 Ga0105237_10047439 3300009545 Bacteria 4319
34 Ga0105238_10003000 3300009551 Bacteria 16857
35 Ga0157371_10008265 3300013102 Bacteria 8313
36 Ga0157370_10005788 3300013104 Bacteria 13815
37 Ga0157369_10002337 3300013105 Bacteria 22828
38 Ga0171462_1003 3300013250 Bacteria 853796
39 Ga0157372_10087077 3300013307 Bacteria 3543
40 Ga0197907_11093632 3300020069 Bacteria 4211
41 Ga0206354_11247678 3300020081 Bacteria 5225
42 Ga0206353_12028661 3300020082 Bacteria 8725
43 Ga0224712_10000637 3300022467 Bacteria 7164
44 Ga0209566_100026 3300025225 Bacteria 367457
45 Ga0209674_100001 3300025226 Bacteria 4013750
46 Ga0209672_100003 3300025228 Bacteria 1560476
47 Ga0209147_100309 3300025229 Bacteria 38478
48 Ga0209563_100001 3300025230 Bacteria 4013775
49 Ga0207427_100089 3300025231 Bacteria 135504
50 Ga0209677_100001 3300025253 Bacteria 4013787
51 Ga0209677_100375 3300025253 Bacteria 27361
52 Ga0209148_1000004 3300025254 Bacteria 1844481
53 Ga0209148_1001633 3300025254 Bacteria 10288
54 Ga0209233_1000001 3300025261 Bacteria 2992747
55 Ga0209455_1000022 3300025272 Bacteria 688910
56 Ga0207656_10000002 3300025321 Bacteria 792178
57 Ga0207705_10000213 3300025909 Bacteria 58174
58 Ga0207684_10002022 3300025910 Bacteria 20887
59 Ga0207654_10000001 3300025911 Bacteria 1816198
60 Ga0207695_10002493 3300025913 Bacteria 27109
61 Ga0207695_10011501 3300025913 Bacteria 10714
62 Ga0207671_10000002 3300025914 Bacteria 1144816
63 Ga0207646_10003234 3300025922 Bacteria 18581
64 Ga0207694_10000115 3300025924 Bacteria 84427
65 Ga0207687_10003754 3300025927 Bacteria 10208
66 Ga0207690_10001356 3300025932 Bacteria 15362
67 Ga0207667_10000272 3300025949 Bacteria 71730
68 Ga0207667_10006016 3300025949 Bacteria 14767
69 Ga0207667_10057517 3300025949 Bacteria 4081
70 Ga0207667_10070303 3300025949 Bacteria 3643
71 Ga0207703_10000141 3300026035 Bacteria 86068
72 Ga0207639_10035795 3300026041 Bacteria 3675
73 Ga0207676_10052785 3300026095 Bacteria 3180
74 Ga0207674_10001774 3300026116 Bacteria 27546
75 Ga0207674_10068965 3300026116 Bacteria 3557
76 Ga0207698_10000162 3300026142 Bacteria 42850
77 Ga0265340_10003118 3300031247 Bacteria 9400
78 Ga0307513_10001059 3300031456 Bacteria 40013
79 Ga0307514_10002541 3300031649 Bacteria 18815
80 Ga0307514_10006062 3300031649 Bacteria 10625
81 Ga0316576_10001014 3300031727 Bacteria 14500
82 Ga0316576_10005672 3300031727 Bacteria 7674
83 Ga0316578_10009758 3300031728 Bacteria 4951
84 Ga0316584_0001474 3300036712 Bacteria 14137
85 Ga0395899_0015808 3300037312 Bacteria 5754
86 Ga0395900_0078749 3300037418 Bacteria 3386
87 Ga0466965_0000009 3300044683 Bacteria 122488
88 Ga0466965_0003334 3300044683 Bacteria 7033
89 Ga0466966_0032771 3300044684 Bacteria 3364
90 Ga0466961_0027282 3300044693 Bacteria 3672
91 Ga0466968_0006733 3300044735 Bacteria 4343
92 Ga0466970_0018106 3300044765 Bacteria 3644
93 Ga0466970_0035799 3300044765 Bacteria 2629
94 Ga0466960_0024260 3300044901 Bacteria 2734
95 Ga0466959_0003915 3300045049 Bacteria 9883
96 Ga0495650_0001013 3300046471 Bacteria 31698
97 Ga0496102_0076977 3300048905 Bacteria 3070
98 Ga0496103_0013184 3300048906 Bacteria 4900
99 Ga0496105_0047014 3300048908 Bacteria 3561
100 Ga0496107_0032001 3300048910 Bacteria 3757
101 Ga0496109_0068849 3300048912 Bacteria 3244
102 Ga0496114_0008452 3300048917 Bacteria 8156
103 Ga0496115_0011477 3300048918 Bacteria 6643
104 Ga0496115_0023496 3300048918 Bacteria 4784
105 Ga0496117_0000053 3300048920 Bacteria 279396
106 Ga0496117_0001576 3300048920 Bacteria 32370
107 Ga0496117_0002371 3300048920 Bacteria 24017
108 Ga0496117_0005515 3300048920 Bacteria 13253
109 Ga0496117_0013833 3300048920 Bacteria 7002
110 Ga0496117_0028669 3300048920 Bacteria 4308
111 Ga0496118_0002454 3300048921 Bacteria 24972
112 Ga0496118_0027924 3300048921 Bacteria 4766
113 Ga0496118_0029206 3300048921 Bacteria 4628
114 Ga0496119_0000924 3300048922 Bacteria 37994
115 Ga0496119_0002264 3300048922 Bacteria 21392
116 Ga0496119_0004238 3300048922 Bacteria 14385
117 Ga0496119_0012174 3300048922 Bacteria 7019
118 Ga0496119_0019313 3300048922 Bacteria 5026
119 Ga0496119_0023872 3300048922 Bacteria 4321
120 Ga0496120_0000426 3300048923 Bacteria 66901
121 Ga0496120_0010133 3300048923 Bacteria 6604
122 Ga0496121_0000132 3300048924 Bacteria 167578
123 Ga0496122_0000194 3300048925 Bacteria 139191
124 Ga0496122_0006042 3300048925 Bacteria 14119
125 Ga0496122_0013893 3300048925 Bacteria 7833
126 Ga0496122_0014104 3300048925 Bacteria 7753
127 Ga0496122_0019167 3300048925 Bacteria 6267
128 Ga0496122_0080946 3300048925 Bacteria 2262
129 Ga0496123_0000350 3300048926 Bacteria 86569
130 Ga0496123_0000681 3300048926 Bacteria 56018
131 Ga0496123_0002958 3300048926 Bacteria 19798
132 Ga0496123_0013803 3300048926 Bacteria 6741
133 Ga0496124_0003767 3300048927 Bacteria 18240
134 Ga0496124_0004053 3300048927 Bacteria 17370
135 Ga0496124_0008052 3300048927 Bacteria 11083
136 Ga0496124_0008895 3300048927 Bacteria 10415
137 Ga0496125_0000077 3300048928 Bacteria 232629
138 Ga0496125_0017043 3300048928 Bacteria 6943
139 Ga0496125_0022371 3300048928 Bacteria 5872
140 Ga0496126_0012711 3300048929 Bacteria 8610
141 Ga0496126_0014786 3300048929 Bacteria 7873
142 Ga0496126_0044891 3300048929 Bacteria 4066
143 Ga0501031_0004368 3300049568 Bacteria 9155
144 Ga0501032_0001556 3300049569 Bacteria 18312
145 Ga0501032_0039471 3300049569 Bacteria 3211
146 Ga0501032_0058307 3300049569 Bacteria 2592
147 Ga0501033_0002659 3300049570 Bacteria 15010
148 Ga0501033_0003764 3300049570 Bacteria 12324
149 Ga0501034_0007125 3300049571 Bacteria 11927
150 Ga0501034_0014274 3300049571 Bacteria 8185
151 Ga0501034_0016561 3300049571 Bacteria 7558
152 Ga0501034_0047729 3300049571 Bacteria 4323
153 Ga0501034_0060637 3300049571 Bacteria 3800
154 Ga0501036_0008562 3300049572 Bacteria 8389
155 Ga0501037_0013021 3300049573 Bacteria 6132
156 Ga0501038_0001166 3300049574 Bacteria 23863
157 Ga0501039_0000287 3300049575 Bacteria 35995
158 Ga0501042_0006518 3300049578 Bacteria 7582
159 Ga0501043_0004673 3300049579 Bacteria 11100
160 Ga0501046_0001394 3300049580 Bacteria 23269
161 Ga0501046_0013854 3300049580 Bacteria 6810
162 Ga0501047_0011806 3300049581 Bacteria 8261
163 Ga0501047_0032158 3300049581 Bacteria 5063
164 Ga0501047_0042644 3300049581 Bacteria 4384
165 Ga0501070_0000100 3300049586 Bacteria 75001
166 Ga0501070_0002817 3300049586 Bacteria 15182
167 Ga0501070_0006307 3300049586 Bacteria 10093
168 Ga0501070_0026693 3300049586 Bacteria 4845
169 Ga0501071_0000388 3300049587 Bacteria 21660
170 Ga0501072_0022801 3300049588 Bacteria 4858
171 Ga0501073_0000223 3300049589 Bacteria 37267
172 Ga0501073_0018072 3300049589 Bacteria 5099
173 Ga0501073_0037544 3300049589 Bacteria 3439
174 Ga0501080_0000083 3300049742 Bacteria 63863
175 Ga0501083_0000031 3300049744 Bacteria 104819
176 Ga0501035_0009248 3300049822 Bacteria 9162
177 Ga0501035_0030005 3300049822 Bacteria 4959
178 Ga0501044_0005242 3300049823 Bacteria 14418
179 Ga0501044_0015200 3300049823 Bacteria 8291
180 Ga0501045_0008397 3300049824 Bacteria 7197
181 nmdc:mga0yw44_6157_c1 3300050492 Bacteria 5768
182 nmdc:mga06z11_10401_c1 3300050494 Bacteria 3963
183 Ga0500635_0000010 3300053080 Bacteria 147500
184 Ga0500635_0006013 3300053080 Bacteria 3222
185 Ga0500643_000072 3300053087 Bacteria 112810
186 Ga0500651_0000194 3300053093 Bacteria 38826
187 Ga0500556_0000001 3300053104 Bacteria 1135060
188 Ga0500556_0000086 3300053104 Bacteria 87063
189 Ga0500562_000397 3300053108 Bacteria 10573
190 Ga0500593_005225 3300053117 Bacteria 5091
191 Ga0500559_0000063 3300053136 Bacteria 87005
192 Ga0500559_0003102 3300053136 Bacteria 8275
193 Ga0500559_0004023 3300053136 Bacteria 7060
194 Ga0500568_0000006 3300053139 Bacteria 522235
195 Ga0500568_0000028 3300053139 Bacteria 161589
196 Ga0500568_0000102 3300053139 Bacteria 78197
197 Ga0500573_0000001 3300053140 Bacteria 436394
198 Ga0500573_0003476 3300053140 Bacteria 8159
199 Ga0500573_0004581 3300053140 Bacteria 7306
200 Ga0500590_007032 3300053148 Bacteria 5529
201 Ga0500616_0000078 3300053153 Bacteria 202009
202 Ga0500616_0000427 3300053153 Bacteria 56111
203 Ga0500616_0000584 3300053153 Bacteria 44375
204 Ga0500616_0000881 3300053153 Bacteria 33077
205 Ga0500616_0005846 3300053153 Bacteria 8240
206 Ga0500620_000233 3300053155 Bacteria 11018
207 Ga0500645_010417 3300053730 Bacteria 3077

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300048925 Ga0496122_0080946 Ga0496122_0080946_37_2181 659
2 3300050494 nmdc:mga06z11_10401_c1 nmdc:mga06z11_10401_c1_94_2100 661
3 3300026116 Ga0207674_10068965 Ga0207674_100689653 663
4 3300005618 Ga0068864_100081619 Ga0068864_1000816192 664
5 3300026095 Ga0207676_10052785 Ga0207676_100527852 664
6 3300005983 Ga0081540_1002638 Ga0081540_100263810 667
7 3300049571 Ga0501034_0007125 Ga0501034_0007125_5551_7650 667
8 3300031727 Ga0316576_10001014 Ga0316576_1000101411 669
9 3300031728 Ga0316578_10009758 Ga0316578_100097584 669
10 3300005467 Ga0070706_100006165 Ga0070706_1000061652 671
11 3300005468 Ga0070707_100000181 Ga0070707_10000018113 671
12 3300005471 Ga0070698_100004762 Ga0070698_1000047629 671
13 3300025910 Ga0207684_10002022 Ga0207684_100020224 671
14 3300025922 Ga0207646_10003234 Ga0207646_1000323413 671
15 3300005458 Ga0070681_10065050 Ga0070681_100650501 672
16 3300013105 Ga0157369_10002337 Ga0157369_1000233721 672
17 3300022467 Ga0224712_10000637 Ga0224712_100006375 672
18 3300049569 Ga0501032_0058307 Ga0501032_0058307_362_2581 672
19 3300031727 Ga0316576_10005672 Ga0316576_100056724 674
20 3300036712 Ga0316584_0001474 Ga0316584_0001474_5180_7399 674
21 3300048921 Ga0496118_0029206 Ga0496118_0029206_2422_4614 676
22 3300053153 Ga0500616_0000584 Ga0500616_0000584_2929_5271 677
23 3300053730 Ga0500645_010417 Ga0500645_010417_863_3034 677
24 3300031247 Ga0265340_10003118 Ga0265340_100031186 679
25 3300031456 Ga0307513_10001059 Ga0307513_100010592 679
26 3300053153 Ga0500616_0005846 Ga0500616_0005846_4977_7241 679
27 3300049571 Ga0501034_0047729 Ga0501034_0047729_1124_3178 680
28 3300049581 Ga0501047_0032158 Ga0501047_0032158_1873_4014 684
29 3300044683 Ga0466965_0003334 Ga0466965_0003334_2950_5268 687
30 3300044683 Ga0466965_0000009 Ga0466965_0000009_45428_47761 702
31 3300048920 Ga0496117_0000053 Ga0496117_0000053_144374_146779 709
32 3300048922 Ga0496119_0023872 Ga0496119_0023872_1739_4144 709
33 3300048925 Ga0496122_0019167 Ga0496122_0019167_165_2570 709
34 3300048926 Ga0496123_0000681 Ga0496123_0000681_33203_35608 709
35 3300048927 Ga0496124_0003767 Ga0496124_0003767_9293_11698 709
36 3300048928 Ga0496125_0022371 Ga0496125_0022371_146_2551 709
37 3300048929 Ga0496126_0044891 Ga0496126_0044891_323_2728 709
38 3300006038 Ga0075365_10006540 Ga0075365_100065403 710
39 3300006051 Ga0075364_10016386 Ga0075364_100163862 710
40 3300013250 Ga0171462_1003 Ga0171462_1003252 715
41 3300048922 Ga0496119_0004238 Ga0496119_0004238_6615_8948 715
42 3300044901 Ga0466960_0024260 Ga0466960_0024260_16_2298 719
43 3300048928 Ga0496125_0000077 Ga0496125_0000077_6821_9178 719
44 3300049571 Ga0501034_0060637 Ga0501034_0060637_129_2513 719
45 3300053139 Ga0500568_0000102 Ga0500568_0000102_27732_30077 719
46 3300049570 Ga0501033_0002659 Ga0501033_0002659_2211_4601 722
47 3300048906 Ga0496103_0013184 Ga0496103_0013184_33_2354 724
48 3300048908 Ga0496105_0047014 Ga0496105_0047014_653_2974 724
49 3300048910 Ga0496107_0032001 Ga0496107_0032001_525_2846 724
50 3300048912 Ga0496109_0068849 Ga0496109_0068849_389_2710 724
51 3300048925 Ga0496122_0006042 Ga0496122_0006042_1066_3576 727
52 3300053136 Ga0500559_0004023 Ga0500559_0004023_3464_5731 728
53 3300053153 Ga0500616_0000881 Ga0500616_0000881_20784_23015 728
54 iso_pu_bacteria 2585428094 2587863331 728
55 iso_pu_bacteria 2808606368 2808885766 729
56 iso_pu_bacteria 2811994872 2812323359 729
57 3300009148 Ga0105243_10012866 Ga0105243_100128661 730
58 3300049586 Ga0501070_0002817 Ga0501070_0002817_187_2436 730
59 3300049589 Ga0501073_0018072 Ga0501073_0018072_1631_3865 730
60 3300049742 Ga0501080_0000083 Ga0501080_0000083_37890_40139 730
61 iso_pu_bacteria 2643221597 2643996039 730
62 iso_pu_bacteria 2773857763 2774399345 730
63 iso_pu_bacteria 2808606306 2808631057 730
64 3300048920 Ga0496117_0013833 Ga0496117_0013833_1068_3431 731
65 3300048923 Ga0496120_0010133 Ga0496120_0010133_2383_4746 731
66 3300048925 Ga0496122_0000194 Ga0496122_0000194_81752_84115 731
67 3300048926 Ga0496123_0000350 Ga0496123_0000350_81740_84103 731
68 3300048927 Ga0496124_0008895 Ga0496124_0008895_5695_8058 731
69 3300048928 Ga0496125_0017043 Ga0496125_0017043_124_2487 731
70 3300048929 Ga0496126_0012711 Ga0496126_0012711_5289_7652 731
71 3300053153 Ga0500616_0000427 Ga0500616_0000427_3783_6020 731
72 3300048920 Ga0496117_0005515 Ga0496117_0005515_9107_11491 732
73 iso_pu_bacteria 2643221619 2644111337 732
74 iso_pu_bacteria 2757320536 2758225914 732
75 iso_pu_bacteria 8016254467 8016257401 732
76 3300049571 Ga0501034_0014274 Ga0501034_0014274_2138_4462 733
77 3300049580 Ga0501046_0013854 Ga0501046_0013854_537_2813 733
78 3300049587 Ga0501071_0000388 Ga0501071_0000388_16060_18384 733
79 iso_pu_bacteria 2585428157 2588108992 733
80 3300009093 Ga0105240_10013606 Ga0105240_100136066 734
81 3300025254 Ga0209148_1001633 Ga0209148_10016333 734
82 3300025913 Ga0207695_10002493 Ga0207695_1000249318 734
83 3300053087 Ga0500643_000072 Ga0500643_000072_32125_34437 734
84 iso_pu_bacteria 8045830549 8045831730 734
85 3300031649 Ga0307514_10002541 Ga0307514_1000254111 735
86 3300053104 Ga0500556_0000001 Ga0500556_0000001_676511_678838 735
87 3300053139 Ga0500568_0000006 Ga0500568_0000006_16083_18410 735
88 iso_pu_bacteria 2643221549 2643767944 736
89 iso_pu_bacteria 2852643534 2852645944 736
90 iso_pu_bacteria 2862993130 2862995060 736
91 iso_pu_bacteria 2870628048 2870630498 736
92 3300048922 Ga0496119_0000924 Ga0496119_0000924_30155_32557 737
93 3300053139 Ga0500568_0000028 Ga0500568_0000028_34012_36276 737
94 3300049569 Ga0501032_0039471 Ga0501032_0039471_78_2324 738
95 3300049586 Ga0501070_0006307 Ga0501070_0006307_1679_3925 738
96 3300049588 Ga0501072_0022801 Ga0501072_0022801_1910_4177 738
97 3300049589 Ga0501073_0000223 Ga0501073_0000223_32967_35213 738
98 3300053104 Ga0500556_0000086 Ga0500556_0000086_40530_42794 738
99 3300053108 Ga0500562_000397 Ga0500562_000397_659_2923 738
100 3300053117 Ga0500593_005225 Ga0500593_005225_2669_4933 738
101 3300053136 Ga0500559_0003102 Ga0500559_0003102_3619_5898 738
102 3300053140 Ga0500573_0004581 Ga0500573_0004581_1925_4144 739
103 3300013104 Ga0157370_10005788 Ga0157370_100057885 740
104 iso_pu_bacteria 2857737099 2857737830 740
105 3300049578 Ga0501042_0006518 Ga0501042_0006518_1152_3506 741
106 3300049581 Ga0501047_0042644 Ga0501047_0042644_1990_4344 741
107 3300049744 Ga0501083_0000031 Ga0501083_0000031_12556_14910 741
108 iso_pu_bacteria 2939657138 2939658675 741
109 3300053140 Ga0500573_0000001 Ga0500573_0000001_396734_399070 742
110 3300053140 Ga0500573_0003476 Ga0500573_0003476_400_2799 742
111 iso_pu_bacteria 2984592036 2984595212 742
112 iso_pu_bacteria 8046352972 8046353102 742
113 3300048920 Ga0496117_0028669 Ga0496117_0028669_370_2754 743
114 3300048921 Ga0496118_0027924 Ga0496118_0027924_1609_3993 743
115 3300048922 Ga0496119_0002264 Ga0496119_0002264_17161_19545 743
116 3300048923 Ga0496120_0000426 Ga0496120_0000426_7513_9897 743
117 iso_pu_bacteria 2833709550 2833711106 743
118 iso_pu_bacteria 2964326757 2964327171 743
119 3300005327 Ga0070658_10004973 Ga0070658_100049735 744
120 3300005455 Ga0070663_100029028 Ga0070663_1000290282 744
121 3300005563 Ga0068855_100031290 Ga0068855_1000312904 744
122 3300025909 Ga0207705_10000213 Ga0207705_1000021315 744
123 3300025949 Ga0207667_10057517 Ga0207667_100575172 744
124 3300048925 Ga0496122_0014104 Ga0496122_0014104_2610_4901 744
125 3300048926 Ga0496123_0002958 Ga0496123_0002958_17194_19485 744
126 iso_pu_bacteria 8004212874 8004213976 744
127 iso_pu_bacteria 8055034563 8055036292 744
128 iso_pu_bacteria 2857733635 2857733906 746
129 iso_pu_bacteria 2919443155 2919446456 746
130 3300025228 Ga0209672_100003 Ga0209672_10000344 747
131 3300025229 Ga0209147_100309 Ga0209147_1003099 747
132 3300025254 Ga0209148_1000004 Ga0209148_1000004339 747
133 3300025272 Ga0209455_1000022 Ga0209455_1000022645 747
134 3300037312 Ga0395899_0015808 Ga0395899_0015808_2072_4330 747
135 3300048929 Ga0496126_0014786 Ga0496126_0014786_5069_7369 747
136 3300050492 nmdc:mga0yw44_6157_c1 nmdc:mga0yw44_6157_c1_2491_4773 747
137 3300053153 Ga0500616_0000078 Ga0500616_0000078_25245_27755 747
138 3300053155 Ga0500620_000233 Ga0500620_000233_3651_6035 747
139 3300044765 Ga0466970_0035799 Ga0466970_0035799_100_2511 748
140 3300048918 Ga0496115_0011477 Ga0496115_0011477_1466_3712 748
141 3300048924 Ga0496121_0000132 Ga0496121_0000132_87797_90229 748
142 3300053080 Ga0500635_0000010 Ga0500635_0000010_65273_67519 748
143 iso_pu_bacteria 2643221566 2643848546 748
144 iso_pu_bacteria 2808606447 2809227558 748
145 iso_pu_bacteria 2821268502 2821270142 748
146 iso_pu_bacteria 2844841374 2844842151 748
147 iso_pu_bacteria 2852632344 2852634319 748
148 iso_pu_bacteria 2919055335 2919057797 748
149 iso_pu_bacteria 2919523602 2919524199 748
150 iso_pu_bacteria 2928153084 2928156192 748
151 3300006038 Ga0075365_10004965 Ga0075365_100049651 749
152 3300020081 Ga0206354_11247678 Ga0206354_112476783 749
153 3300048918 Ga0496115_0023496 Ga0496115_0023496_1271_3523 749
154 3300037418 Ga0395900_0078749 Ga0395900_0078749_217_2559 750
155 iso_pu_bacteria 2808606372 2808901814 750
156 iso_pu_bacteria 2939660829 2939662633 750
157 3300013307 Ga0157372_10087077 Ga0157372_100870772 751
158 3300048917 Ga0496114_0008452 Ga0496114_0008452_4589_6859 751
159 3300048922 Ga0496119_0019313 Ga0496119_0019313_1168_3438 751
160 3300053093 Ga0500651_0000194 Ga0500651_0000194_25326_27698 751
161 3300053148 Ga0500590_007032 Ga0500590_007032_1973_4357 751
162 3300003578 Ga0006562J51391_1026734 Ga0006562J51391_10267344 752
163 3300003760 Ga0055527_1000012 Ga0055527_1000012302 752
164 3300003762 Ga0055542_1000017 Ga0055542_1000017302 752
165 3300003763 Ga0055529_1000023 Ga0055529_1000023269 752
166 3300005327 Ga0070658_10031565 Ga0070658_100315653 752
167 3300005366 Ga0070659_100000149 Ga0070659_10000014921 752
168 3300005563 Ga0068855_100002405 Ga0068855_10000240521 752
169 3300005577 Ga0068857_100000219 Ga0068857_10000021934 752
170 3300005616 Ga0068852_100005903 Ga0068852_1000059032 752
171 3300005834 Ga0068851_10000014 Ga0068851_10000014143 752
172 3300005842 Ga0068858_100000893 Ga0068858_10000089318 752
173 3300009098 Ga0105245_10022823 Ga0105245_100228234 752
174 3300009545 Ga0105237_10000133 Ga0105237_10000133102 752
175 3300009545 Ga0105237_10047439 Ga0105237_100474392 752
176 3300009551 Ga0105238_10003000 Ga0105238_100030002 752
177 3300020069 Ga0197907_11093632 Ga0197907_110936322 752
178 3300020082 Ga0206353_12028661 Ga0206353_120286617 752
179 3300025253 Ga0209677_100375 Ga0209677_10037522 752
180 3300025321 Ga0207656_10000002 Ga0207656_10000002408 752
181 3300025911 Ga0207654_10000001 Ga0207654_100000011458 752
182 3300025913 Ga0207695_10011501 Ga0207695_100115017 752
183 3300025914 Ga0207671_10000002 Ga0207671_10000002702 752
184 3300025924 Ga0207694_10000115 Ga0207694_1000011516 752
185 3300025927 Ga0207687_10003754 Ga0207687_100037542 752
186 3300025932 Ga0207690_10001356 Ga0207690_100013568 752
187 3300025949 Ga0207667_10000272 Ga0207667_1000027226 752
188 3300025949 Ga0207667_10006016 Ga0207667_100060167 752
189 3300025949 Ga0207667_10070303 Ga0207667_100703033 752
190 3300026035 Ga0207703_10000141 Ga0207703_1000014179 752
191 3300026041 Ga0207639_10035795 Ga0207639_100357951 752
192 3300026116 Ga0207674_10001774 Ga0207674_1000177416 752
193 3300026142 Ga0207698_10000162 Ga0207698_1000016232 752
194 3300031649 Ga0307514_10006062 Ga0307514_100060624 752
195 3300044684 Ga0466966_0032771 Ga0466966_0032771_812_3070 752
196 3300044693 Ga0466961_0027282 Ga0466961_0027282_946_3204 752
197 3300044735 Ga0466968_0006733 Ga0466968_0006733_1178_3436 752
198 3300045049 Ga0466959_0003915 Ga0466959_0003915_1340_3598 752
199 3300046471 Ga0495650_0001013 Ga0495650_0001013_14406_16808 752
200 3300049568 Ga0501031_0004368 Ga0501031_0004368_5337_7598 752
201 3300049586 Ga0501070_0000100 Ga0501070_0000100_36101_38374 752
202 3300049822 Ga0501035_0030005 Ga0501035_0030005_537_2810 752
203 3300049823 Ga0501044_0015200 Ga0501044_0015200_2064_4340 752
204 3300053080 Ga0500635_0006013 Ga0500635_0006013_687_3086 752
205 iso_pu_bacteria 2643221632 2644183098 752
206 3300003752 Ga0055539_1000058 Ga0055539_100005892 753
207 3300003756 Ga0055533_1000001 Ga0055533_1000001489 753
208 3300003759 Ga0055525_1000180 Ga0055525_100018022 753
209 3300025225 Ga0209566_100026 Ga0209566_100026234 753
210 3300025226 Ga0209674_100001 Ga0209674_100001490 753
211 3300025230 Ga0209563_100001 Ga0209563_100001490 753
212 3300025253 Ga0209677_100001 Ga0209677_100001490 753
213 3300044765 Ga0466970_0018106 Ga0466970_0018106_557_2818 753
214 iso_pu_bacteria 2751185788 2753301182 753
215 iso_pu_bacteria 2904501621 2904503570 753
216 iso_pu_bacteria 2908674828 2908675217 753
217 iso_pu_bacteria 2909074476 2909075466 753
218 iso_pu_bacteria 2919039151 2919039896 753
219 iso_pu_bacteria 2928104781 2928108412 753
220 iso_pu_bacteria 2928500415 2928501238 753
221 iso_pu_bacteria 2966924647 2966925816 753
222 3300013102 Ga0157371_10008265 Ga0157371_100082652 754
223 3300048905 Ga0496102_0076977 Ga0496102_0076977_651_3002 754
224 3300048920 Ga0496117_0002371 Ga0496117_0002371_3395_5719 754
225 3300048921 Ga0496118_0002454 Ga0496118_0002454_3585_5909 754
226 3300048922 Ga0496119_0012174 Ga0496119_0012174_4070_6394 754
227 3300048925 Ga0496122_0013893 Ga0496122_0013893_2355_4679 754
228 3300048926 Ga0496123_0013803 Ga0496123_0013803_1454_3778 754
229 3300048927 Ga0496124_0004053 Ga0496124_0004053_4123_6456 754
230 3300048927 Ga0496124_0008052 Ga0496124_0008052_2930_5254 754
231 3300053136 Ga0500559_0000063 Ga0500559_0000063_82654_85044 754
232 iso_pu_bacteria 2857729791 2857730113 754
233 iso_pu_bacteria 2919042368 2919045158 754
234 iso_pu_bacteria 2984551494 2984553359 754
235 3300048920 Ga0496117_0001576 Ga0496117_0001576_13467_15890 755
236 iso_pu_bacteria 2928121344 2928123337 755
237 3300049569 Ga0501032_0001556 Ga0501032_0001556_9260_11539 758
238 3300049570 Ga0501033_0003764 Ga0501033_0003764_9158_11437 758
239 3300049571 Ga0501034_0016561 Ga0501034_0016561_279_2558 758
240 3300049572 Ga0501036_0008562 Ga0501036_0008562_1888_4167 758
241 3300049573 Ga0501037_0013021 Ga0501037_0013021_3337_5616 758
242 3300049574 Ga0501038_0001166 Ga0501038_0001166_1888_4167 758
243 3300049575 Ga0501039_0000287 Ga0501039_0000287_20996_23275 758
244 3300049579 Ga0501043_0004673 Ga0501043_0004673_5144_7423 758
245 3300049580 Ga0501046_0001394 Ga0501046_0001394_12880_15159 758
246 3300049581 Ga0501047_0011806 Ga0501047_0011806_4223_6502 758
247 3300049586 Ga0501070_0026693 Ga0501070_0026693_2384_4663 758
248 3300049589 Ga0501073_0037544 Ga0501073_0037544_575_2854 758
249 3300049822 Ga0501035_0009248 Ga0501035_0009248_4996_7275 758
250 3300049823 Ga0501044_0005242 Ga0501044_0005242_10416_12695 758
251 3300049824 Ga0501045_0008397 Ga0501045_0008397_4904_7183 758
252 iso_pu_bacteria 2643221572 2643875528 758
253 iso_pu_bacteria 2643221669 2644382583 758
254 iso_pu_bacteria 2870622029 2870624198 758
255 iso_pu_bacteria 2895660088 2895661612 760
256 iso_pu_bacteria 2904430863 2904430909 760
257 iso_pu_bacteria 8057345674 8057347865 761
258 iso_pu_bacteria 2844852863 2844854775 762
259 iso_pu_bacteria 8056037122 8056038953 762
260 3300002772 JGI25164J39214_1001093 JGI25164J39214_10010932 763
261 3300003214 JGI25165J46597_1000002 JGI25165J46597_1000002429 763
262 3300025231 Ga0207427_100089 Ga0207427_10008982 763
263 3300025261 Ga0209233_1000001 Ga0209233_10000012377 763
264 iso_pu_bacteria 2643221616 2644095778 763
265 iso_pu_bacteria 2884763398 2884765141 763

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03119

DNA_ligase_ZBD

NAD-dependent DNA ligase C4 zinc finger domain

429

457

0.98

PF03120

DNA_ligase_OB

NAD-dependent DNA ligase OB-fold domain

343

421

0.97

PF12826

HHH_2

Helix-hairpin-helix motif

590

653

0.97

PF14520

HHH_5

Helix-hairpin-helix domain

592

643

0.96

PF00533

BRCT

BRCA1 C Terminus (BRCT) domain

676

749

0.94

PF01653

DNA_ligase_aden

NAD-dependent DNA ligase adenylation domain

82

340

0.93

PF22745

Nlig-Ia

DNA ligase-like, N-terminal NAD+-binding domain

20

94

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
2k7f-assembly1.cif.gz_A haddock calculated model of the complex between the brct region of rfc p140 and dsdna 0.884 671 743
3bac-assembly1.cif.gz_A-2 structural basis for the inhibition of bacterial nad+ dependent dna ligase 0.8829 81 335
3bac-assembly1.cif.gz_A-2 structural basis for the inhibition of bacterial nad+ dependent dna ligase 0.8633 81 335
4yxm-assembly1.cif.gz_A structure of thermotoga maritima disa d75n mutant with reaction product c-di-amp 0.8604 594 642
2ebu-assembly1.cif.gz_A solution structure of the brct domain from human replication factor c large subunit 1 0.8583 669 747
ID Description Score Start End Superfamily
af_P9WNV1_524_596_1.10.150.20 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9998 578 649 1.10.150.20
af_P15042_317_390_2.40.50.140 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9755 336 406 2.40.50.140
1taeD01 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;Helix hairpin bin 0.9728 14 63 1.10.287.610
af_P9WNV1_524_596_1.10.150.20 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9728 578 649 1.10.150.20
4cc5A02 Alpha Beta;2-Layer Sandwich;Dna Ligase; domain 1; 0.9712 92 333 3.30.1490.70
ID Description Score Start End GO Terms
AF-A0A6G3PRP3-F1-model_v4 BRCT domain-containing protein 0.9649 671 742
AF-A0A529UDK6-F1-model_v4 deleted 0.9575 132 328
AF-A0A838S9B8-F1-model_v4 NAD-dependent DNA ligase LigA 0.9568 674 750 GO:0016874
AF-A0A7X4ZSR3-F1-model_v4 deleted 0.9548 674 740
AF-A0A529UDK6-F1-model_v4 deleted 0.9526 132 328

Feature Viewer

pLDDT pTM Quality
85.11 0.53 Medium
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Predicted Structure (AlphaFold2)

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