F373731

General Info

Members Datasets Scaffolds Average Seq Length
265 176 252 153

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8055034563|8055034894
Length 144
Sequence IDAPRSSAPARKRTNWEKWGWIYMRVSGVLLLVLVFGHLASNLLLTDGGVHAINFGFVAGKLASPFWQIWDTLLLWLALIHGANGMRTIVNDYVSRPGLAKAFKIALFLSAALLILLGTFVIYTLDPCPAGADPALVASFCTAS

Samples

Sample ID Description Type Environment
1 2643221567 Phycicoccus sp. Root563 Isolate Unclassified
2 2643221624 Phycicoccus sp. Root101 Isolate Unclassified
3 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
4 2643221679 Angustibacter sp. Root456 Isolate Unclassified
5 2773857759 Microbacterium sp. 1294 Isolate Unclassified
6 2808606306 Microbacterium sp. SLBN-146 Isolate Unclassified
7 2808606365 Phycicoccus sp. SLBN-51 Isolate Unclassified
8 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
9 2835188231 Isoptericola variabilis JZ7 Isolate Unclassified
10 2919446982 Phycicoccus sp. 3266 Isolate Rhizosphere
11 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
12 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
13 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
14 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
15 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
16 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
17 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
18 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
19 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
20 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
21 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
22 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
23 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
24 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
25 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
26 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
27 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
30 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
31 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
32 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
33 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
34 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
35 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
36 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
37 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
38 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
39 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
40 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
41 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
42 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
43 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
44 3300020076 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) (version 3) Metatranscriptome Rhizosphere
45 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
46 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
47 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
48 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
66 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
67 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
68 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
69 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
70 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
71 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
72 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
73 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
74 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
75 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
76 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
77 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
78 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
79 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
80 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
81 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
82 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
83 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
84 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
85 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
86 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
87 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
88 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
89 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
90 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
91 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
92 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
93 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
94 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
95 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
96 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
97 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
98 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
99 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
100 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
101 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
102 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
103 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
104 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
105 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
106 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
107 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
108 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
109 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
110 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
111 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
115 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
117 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
119 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
120 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
121 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
123 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
124 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
125 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
126 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
127 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
128 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
129 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
130 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
131 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
132 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
133 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
134 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
135 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
136 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
137 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
138 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
139 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
140 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
141 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
142 3300059477 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 50R_CW_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
143 3300059490 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 7R_CD_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
144 3300059491 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 12R_AW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
145 3300059492 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 14R_AD_T1_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
146 3300059493 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 19R_SW_T1_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
147 3300059503 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 21R_SD_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
148 3300059504 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 23R_SD_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
149 3300059505 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 24R_SD_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
150 3300059506 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 52R_CW_T2_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
151 3300059508 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 53R_CD_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
152 3300059509 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 54R_CD_T2_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
153 3300059510 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 55R_CD_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
154 3300059511 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 56R_CD_T2_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
155 3300059512 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 57R_AW_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
156 3300059513 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 59R_AW_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
157 3300059605 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 71R_SD_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
158 3300059607 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 163R_SW_T3_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
159 3300059623 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 66R_SW_T2_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
160 3300059626 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 173R_CD_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
161 3300059628 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 160R_AD_T3_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
162 3300059630 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 165R_SD_T3_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
163 3300059631 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 168R_SD_T3_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
164 3300059639 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 3R_CW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
165 3300059641 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 9R_AW_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
166 3300059642 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 10R_AW_T1_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
167 3300059643 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 13R_AD_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
168 3300059644 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 38R_AD_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
169 3300059645 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 18R_SW_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
170 3300059647 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 43R_SW_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
171 3300059648 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 65R_SW_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
172 3300059655 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 152R_CD_T3_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
173 3300060344 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 36R_AW_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
174 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
175 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
176 8055034563 Leucobacter allii H21R-40 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 75.85
Metatranscriptomes 19.25
Isolates 4.91

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 7.55
Rhizosphere 87.55
Stem 0
Stem Tuber 0
Unclassified 4.91

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10118510 3300001989 Bacteria 791
2 JGI24739J22299_10174515 3300001989 Bacteria 633
3 JGI24737J22298_10066493 3300001990 Bacteria 1079
4 Ga0070658_10881936 3300005327 Bacteria 778
5 Ga0070658_11413682 3300005327 Bacteria 604
6 Ga0070683_100531875 3300005329 Bacteria 1123
7 Ga0070683_100794935 3300005329 Bacteria 907
8 Ga0070683_100995183 3300005329 Bacteria 805
9 Ga0070682_101176200 3300005337 Bacteria 646
10 Ga0070682_101249343 3300005337 Bacteria 629
11 Ga0070660_100476883 3300005339 Bacteria 1036
12 Ga0070660_101238935 3300005339 Bacteria 633
13 Ga0070689_100902220 3300005340 Bacteria 782
14 Ga0070661_100262436 3300005344 Bacteria 1336
15 Ga0070659_100398390 3300005366 Bacteria 1162
16 Ga0070659_100525396 3300005366 Bacteria 1011
17 Ga0070709_11117502 3300005434 Bacteria 631
18 Ga0070678_100509761 3300005456 Bacteria 1063
19 Ga0070678_101119206 3300005456 Bacteria 728
20 Ga0070681_11081584 3300005458 Bacteria 723
21 Ga0070681_11379923 3300005458 Bacteria 628
22 Ga0070679_100204963 3300005530 Bacteria 1937
23 Ga0070684_100824143 3300005535 Bacteria 868
24 Ga0070672_100816528 3300005543 Bacteria 821
25 Ga0068856_100006354 3300005614 Bacteria 11594
26 Ga0068852_100174300 3300005616 Bacteria 2018
27 Ga0068852_101133263 3300005616 Bacteria 803
28 Ga0105244_10018464 3300009036 Bacteria 3913
29 Ga0105245_10310206 3300009098 Bacteria 1551
30 Ga0105243_10095553 3300009148 Bacteria 2456
31 Ga0105243_10165298 3300009148 Bacteria 1912
32 Ga0105241_10182731 3300009174 Bacteria 1740
33 Ga0105242_10508850 3300009176 Bacteria 1147
34 Ga0105238_10454304 3300009551 Bacteria 1278
35 Ga0105238_10644696 3300009551 Bacteria 1069
36 Ga0105238_10913852 3300009551 Bacteria 896
37 Ga0105239_12127705 3300010375 Bacteria 652
38 Ga0105246_10141430 3300011119 Bacteria 1810
39 Ga0105246_10166602 3300011119 Bacteria 1683
40 Ga0157370_10860894 3300013104 Bacteria 823
41 Ga0157370_11604319 3300013104 Bacteria 584
42 Ga0157369_10045139 3300013105 Bacteria 4794
43 Ga0157369_10358871 3300013105 Bacteria 1513
44 Ga0157369_10420510 3300013105 Bacteria 1385
45 Ga0163162_10294584 3300013306 Bacteria 1754
46 Ga0163162_10644663 3300013306 Bacteria 1183
47 Ga0157372_10203103 3300013307 Bacteria 2296
48 Ga0157372_10465817 3300013307 Bacteria 1473
49 Ga0157372_10520323 3300013307 Bacteria 1387
50 Ga0157372_10941948 3300013307 Bacteria 1001
51 Ga0157375_10265513 3300013308 Bacteria 1878
52 Ga0206356_10595526 3300020070 Bacteria 603
53 Ga0206355_1312688 3300020076 Bacteria 699
54 Ga0206355_1541619 3300020076 Bacteria 800
55 Ga0206352_10707666 3300020078 Bacteria 1139
56 Ga0206353_12032663 3300020082 Bacteria 779
57 Ga0224712_10125742 3300022467 Bacteria 1115
58 Ga0224712_10142284 3300022467 Bacteria 1057
59 Ga0224712_10203173 3300022467 Bacteria 901
60 Ga0207655_1001398 3300025728 Bacteria 22553
61 Ga0207688_10103777 3300025901 Bacteria 1644
62 Ga0207647_10394914 3300025904 Bacteria 780
63 Ga0207707_10407737 3300025912 Bacteria 1166
64 Ga0207657_10212668 3300025919 Bacteria 1551
65 Ga0207649_10785593 3300025920 Bacteria 742
66 Ga0207652_10215846 3300025921 Bacteria 1728
67 Ga0207664_10317489 3300025929 Bacteria 1374
68 Ga0207690_10300348 3300025932 Bacteria 1256
69 Ga0207709_10011370 3300025935 Bacteria 4910
70 Ga0207709_10047602 3300025935 Bacteria 2608
71 Ga0207661_10323400 3300025944 Bacteria 1387
72 Ga0207661_11295013 3300025944 Bacteria 670
73 Ga0207667_10526164 3300025949 Bacteria 1198
74 Ga0207640_11066232 3300025981 Bacteria 714
75 Ga0207708_10102920 3300026075 Bacteria 2211
76 Ga0207702_10012258 3300026078 Bacteria 7135
77 Ga0207702_10192150 3300026078 Bacteria 1887
78 Ga0207683_10318795 3300026121 Bacteria 1424
79 Ga0207698_10619204 3300026142 Bacteria 1069
80 Ga0207698_11561493 3300026142 Bacteria 675
81 Ga0307405_10396436 3300031731 Bacteria 1079
82 Ga0307413_10021203 3300031824 Bacteria 3473
83 Ga0307413_10364387 3300031824 Bacteria 1120
84 Ga0307410_10002146 3300031852 Bacteria 9372
85 Ga0307410_10161628 3300031852 Bacteria 1679
86 Ga0307410_11347753 3300031852 Bacteria 625
87 Ga0307406_10000126 3300031901 Bacteria 44932
88 Ga0307406_10090781 3300031901 Bacteria 2056
89 Ga0307406_10459738 3300031901 Bacteria 1023
90 Ga0307407_10060897 3300031903 Bacteria 2204
91 Ga0307412_10084799 3300031911 Bacteria 2200
92 Ga0307409_100004789 3300031995 Bacteria 7677
93 Ga0307416_100052666 3300032002 Bacteria 3260
94 Ga0307415_100085551 3300032126 Bacteria 2266
95 Ga0373931_1083536 3300035691 Bacteria 545
96 Ga0373925_1415087 3300037068 Bacteria 570
97 Ga0395900_0205061 3300037418 Bacteria 1993
98 Ga0395898_0111628 3300037466 Bacteria 2620
99 Ga0395901_0002167 3300038443 Bacteria 20056
100 Ga0395901_0223608 3300038443 Bacteria 1967
101 Ga0395901_0304346 3300038443 Bacteria 1652
102 Ga0451797_0369639 3300041453 Bacteria 963
103 Ga0451833_0338870 3300041491 Bacteria 578
104 Ga0451843_0612281 3300041509 Bacteria 3603
105 Ga0451853_2751269 3300041512 Bacteria 2406
106 Ga0439445_0049008 3300042004 Bacteria 1137
107 Ga0466965_0007468 3300044683 Bacteria 5022
108 Ga0466964_0514355 3300044706 Bacteria 645
109 Ga0466960_0001689 3300044901 Bacteria 8093
110 Ga0466960_0040162 3300044901 Bacteria 2211
111 Ga0466959_0079685 3300045049 Bacteria 2361
112 Ga0466967_0096328 3300045976 Bacteria 2699
113 Ga0495653_0216606 3300046463 Bacteria 1290
114 Ga0495662_0099649 3300046476 Bacteria 1421
115 Ga0495608_0190750 3300046511 Bacteria 1294
116 Ga0495608_0850718 3300046511 Bacteria 536
117 Ga0495667_0101651 3300046559 Bacteria 1860
118 Ga0495635_0202734 3300046663 Bacteria 1345
119 Ga0495657_0309345 3300046675 Bacteria 941
120 Ga0495581_0103808 3300047315 Bacteria 1652
121 Ga0495676_0105170 3300047321 Bacteria 2082
122 Ga0495680_0120822 3300047322 Bacteria 1934
123 Ga0495675_0191702 3300047444 Bacteria 1247
124 Ga0495593_0112521 3300047673 Bacteria 1389
125 Ga0496101_0347959 3300048904 Bacteria 1164
126 Ga0496101_0541778 3300048904 Bacteria 920
127 Ga0496102_0002996 3300048905 Bacteria 14305
128 Ga0496102_0031750 3300048905 Bacteria 4740
129 Ga0496103_0143637 3300048906 Bacteria 1527
130 Ga0496103_0293142 3300048906 Bacteria 1046
131 Ga0496103_0581249 3300048906 Bacteria 714
132 Ga0496104_0049598 3300048907 Bacteria 3958
133 Ga0496106_0043424 3300048909 Bacteria 3373
134 Ga0496106_0878643 3300048909 Bacteria 709
135 Ga0496109_0299974 3300048912 Bacteria 1515
136 Ga0496110_0139413 3300048913 Bacteria 2192
137 Ga0496113_0318210 3300048916 Bacteria 1247
138 Ga0496114_0005951 3300048917 Bacteria 9589
139 Ga0496114_0030127 3300048917 Bacteria 4463
140 Ga0496114_0037885 3300048917 Bacteria 3989
141 Ga0496114_0226484 3300048917 Bacteria 1642
142 Ga0496115_0051759 3300048918 Bacteria 3292
143 Ga0496115_0527357 3300048918 Bacteria 946
144 Ga0496126_0262982 3300048929 Bacteria 1434
145 Ga0501032_0141952 3300049569 Bacteria 1581
146 Ga0501032_0550387 3300049569 Bacteria 736
147 Ga0501033_0014913 3300049570 Bacteria 5900
148 Ga0501033_0413711 3300049570 Bacteria 939
149 Ga0501034_0048337 3300049571 Bacteria 4294
150 Ga0501034_0051914 3300049571 Bacteria 4133
151 Ga0501034_0451904 3300049571 Bacteria 1202
152 Ga0501036_0002781 3300049572 Bacteria 13854
153 Ga0501036_0106280 3300049572 Bacteria 2374
154 Ga0501036_0126825 3300049572 Bacteria 2155
155 Ga0501036_0912103 3300049572 Bacteria 721
156 Ga0501037_0064993 3300049573 Bacteria 2658
157 Ga0501037_0105944 3300049573 Bacteria 2027
158 Ga0501038_0001484 3300049574 Bacteria 21609
159 Ga0501039_0010529 3300049575 Bacteria 7047
160 Ga0501039_0281521 3300049575 Bacteria 1307
161 Ga0501040_0268083 3300049576 Bacteria 1219
162 Ga0501041_0017836 3300049577 Bacteria 4224
163 Ga0501041_0283732 3300049577 Bacteria 1042
164 Ga0501041_0550949 3300049577 Bacteria 735
165 Ga0501042_0001441 3300049578 Bacteria 13984
166 Ga0501042_0451153 3300049578 Bacteria 933
167 Ga0501043_0014797 3300049579 Bacteria 6109
168 Ga0501043_0047807 3300049579 Bacteria 3364
169 Ga0501043_0400803 3300049579 Bacteria 1037
170 Ga0501046_0014186 3300049580 Bacteria 6731
171 Ga0501046_0266986 3300049580 Bacteria 1256
172 Ga0501047_0004404 3300049581 Bacteria 13257
173 Ga0501048_0005106 3300049582 Bacteria 10001
174 Ga0501048_0319874 3300049582 Bacteria 1105
175 Ga0501048_0437514 3300049582 Bacteria 936
176 Ga0501048_1177698 3300049582 Bacteria 551
177 Ga0501067_0163927 3300049583 Bacteria 1238
178 Ga0501068_0086524 3300049584 Bacteria 1929
179 Ga0501068_0712778 3300049584 Bacteria 656
180 Ga0501069_0212789 3300049585 Bacteria 1122
181 Ga0501069_0247358 3300049585 Bacteria 1040
182 Ga0501071_0016721 3300049587 Bacteria 5045
183 Ga0501071_0510465 3300049587 Bacteria 922
184 Ga0501071_0560162 3300049587 Bacteria 878
185 Ga0501073_0115120 3300049589 Bacteria 1864
186 Ga0501074_0028468 3300049590 Bacteria 4050
187 Ga0501074_0166694 3300049590 Bacteria 1573
188 Ga0501076_0025506 3300049592 Bacteria 4575
189 Ga0501076_0330006 3300049592 Bacteria 1251
190 Ga0501076_0681219 3300049592 Bacteria 849
191 Ga0501077_0004056 3300049593 Bacteria 8839
192 Ga0501079_0012352 3300049741 Bacteria 6517
193 Ga0501080_0073178 3300049742 Bacteria 3188
194 Ga0501081_0274456 3300049743 Bacteria 1233
195 Ga0501083_0058890 3300049744 Bacteria 2569
196 Ga0501035_0002505 3300049822 Bacteria 17950
197 Ga0501044_0055959 3300049823 Bacteria 4049
198 Ga0501045_0154604 3300049824 Bacteria 1707
199 Ga0501045_0235675 3300049824 Bacteria 1362
200 Ga0501045_0563632 3300049824 Bacteria 844
201 Ga0495619_0256906 3300053085 Bacteria 1211
202 Ga0501084_0068561 3300054114 Bacteria 2969
203 Ga0501084_0091356 3300054114 Bacteria 2556
204 Ga0501084_0556453 3300054114 Bacteria 969
205 Ga0501084_0723720 3300054114 Bacteria 839
206 Ga0587084_106305 3300059477 Bacteria 575
207 Ga0587066_116321 3300059490 Bacteria 626
208 Ga0587070_053795 3300059491 Bacteria 812
209 Ga0587073_0039687 3300059492 Bacteria 1019
210 Ga0587073_0065515 3300059492 Bacteria 864
211 Ga0587077_070748 3300059493 Bacteria 779
212 Ga0587080_041983 3300059503 Bacteria 836
213 Ga0587082_015402 3300059504 Bacteria 1180
214 Ga0587083_0055903 3300059505 Bacteria 875
215 Ga0587085_057227 3300059506 Bacteria 727
216 Ga0587085_118673 3300059506 Bacteria 578
217 Ga0587088_012851 3300059508 Bacteria 1274
218 Ga0587088_037496 3300059508 Bacteria 898
219 Ga0587089_028668 3300059509 Bacteria 810
220 Ga0587090_036564 3300059510 Bacteria 846
221 Ga0587091_016763 3300059511 Bacteria 1226
222 Ga0587092_041355 3300059512 Bacteria 803
223 Ga0587094_011983 3300059513 Bacteria 1151
224 Ga0587106_020098 3300059605 Bacteria 982
225 Ga0587125_032425 3300059607 Bacteria 673
226 Ga0587101_021260 3300059623 Bacteria 936
227 Ga0587115_090625 3300059626 Bacteria 555
228 Ga0587122_022873 3300059628 Bacteria 692
229 Ga0587128_016454 3300059630 Bacteria 1083
230 Ga0587128_018927 3300059630 Bacteria 1037
231 Ga0587130_012925 3300059631 Bacteria 839
232 Ga0587062_020190 3300059639 Bacteria 937
233 Ga0587062_036994 3300059639 Bacteria 775
234 Ga0587068_045208 3300059641 Bacteria 808
235 Ga0587068_085027 3300059641 Bacteria 644
236 Ga0587069_046604 3300059642 Bacteria 758
237 Ga0587069_054566 3300059642 Bacteria 720
238 Ga0587072_052716 3300059643 Bacteria 819
239 Ga0587075_025742 3300059644 Bacteria 906
240 Ga0587076_039678 3300059645 Bacteria 875
241 Ga0587076_075748 3300059645 Bacteria 708
242 Ga0587079_063824 3300059647 Bacteria 805
243 Ga0587079_109560 3300059647 Bacteria 670
244 Ga0587100_012163 3300059648 Bacteria 750
245 Ga0587114_016905 3300059655 Bacteria 983
246 Ga0587114_045004 3300059655 Bacteria 728
247 Ga0587071_028246 3300060344 Bacteria 1067
248 Ga0587071_067948 3300060344 Bacteria 770
249 Ga0501082_0020645 3300060353 Bacteria 5678
250 Ga0501082_0061958 3300060353 Bacteria 3219
251 Ga0501082_0157422 3300060353 Bacteria 1973
252 Ga0530510_0007465 3300061734 Bacteria 7615

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005340 Ga0070689_100902220 Ga0070689_1009022201 128
2 iso_pu_bacteria 2995726249 2995728948 134
3 iso_pu_bacteria 8055034563 8055034894 134
4 3300009148 Ga0105243_10095553 Ga0105243_100955532 136
5 3300025935 Ga0207709_10047602 Ga0207709_100476022 136
6 3300026075 Ga0207708_10102920 Ga0207708_101029203 136
7 3300049572 Ga0501036_0106280 Ga0501036_0106280_398_829 136
8 3300049575 Ga0501039_0281521 Ga0501039_0281521_330_761 136
9 3300049579 Ga0501043_0400803 Ga0501043_0400803_471_902 136
10 3300049582 Ga0501048_0437514 Ga0501048_0437514_187_618 136
11 3300049587 Ga0501071_0560162 Ga0501071_0560162_54_485 136
12 3300049592 Ga0501076_0025506 Ga0501076_0025506_3222_3653 136
13 3300049824 Ga0501045_0235675 Ga0501045_0235675_687_1118 136
14 3300054114 Ga0501084_0723720 Ga0501084_0723720_82_513 136
15 3300005339 Ga0070660_101238935 Ga0070660_1012389351 137
16 3300025944 Ga0207661_11295013 Ga0207661_112950132 137
17 iso_pu_bacteria 2833709550 2833710161 137
18 3300013306 Ga0163162_10644663 Ga0163162_106446632 138
19 3300041512 Ga0451853_2751269 Ga0451853_2751269_1751_2197 138
20 iso_pu_bacteria 2773857759 2774383574 138
21 iso_pu_bacteria 2808606306 2808631877 138
22 iso_pu_bacteria 2835188231 2835191086 138
23 iso_pu_bacteria 2977251589 2977251923 138
24 3300013104 Ga0157370_11604319 Ga0157370_116043191 139
25 3300031852 Ga0307410_10161628 Ga0307410_101616282 139
26 3300048907 Ga0496104_0049598 Ga0496104_0049598_3248_3697 139
27 3300048917 Ga0496114_0030127 Ga0496114_0030127_2242_2691 139
28 3300048918 Ga0496115_0051759 Ga0496115_0051759_2659_3108 139
29 3300059477 Ga0587084_106305 Ga0587084_106305_62_490 139
30 3300005337 Ga0070682_101176200 Ga0070682_1011762002 140
31 3300013307 Ga0157372_10941948 Ga0157372_109419482 140
32 3300044901 Ga0466960_0001689 Ga0466960_0001689_7563_8009 140
33 3300048929 Ga0496126_0262982 Ga0496126_0262982_529_990 140
34 3300049569 Ga0501032_0141952 Ga0501032_0141952_1030_1491 140
35 3300049571 Ga0501034_0048337 Ga0501034_0048337_2092_2553 140
36 3300049571 Ga0501034_0051914 Ga0501034_0051914_1706_2149 140
37 3300049571 Ga0501034_0451904 Ga0501034_0451904_394_837 140
38 3300049572 Ga0501036_0126825 Ga0501036_0126825_1251_1712 140
39 3300049572 Ga0501036_0912103 Ga0501036_0912103_126_569 140
40 3300049573 Ga0501037_0064993 Ga0501037_0064993_816_1277 140
41 3300049574 Ga0501038_0001484 Ga0501038_0001484_20878_21339 140
42 3300049579 Ga0501043_0047807 Ga0501043_0047807_91_552 140
43 3300049580 Ga0501046_0014186 Ga0501046_0014186_2798_3259 140
44 3300049581 Ga0501047_0004404 Ga0501047_0004404_830_1291 140
45 3300049582 Ga0501048_0319874 Ga0501048_0319874_463_924 140
46 3300049583 Ga0501067_0163927 Ga0501067_0163927_438_899 140
47 3300049585 Ga0501069_0212789 Ga0501069_0212789_617_1078 140
48 3300049589 Ga0501073_0115120 Ga0501073_0115120_315_776 140
49 3300049590 Ga0501074_0166694 Ga0501074_0166694_733_1194 140
50 3300049744 Ga0501083_0058890 Ga0501083_0058890_1380_1841 140
51 3300049822 Ga0501035_0002505 Ga0501035_0002505_15097_15558 140
52 3300049823 Ga0501044_0055959 Ga0501044_0055959_1615_2076 140
53 3300054114 Ga0501084_0091356 Ga0501084_0091356_921_1382 140
54 3300060353 Ga0501082_0020645 Ga0501082_0020645_277_720 140
55 3300060353 Ga0501082_0157422 Ga0501082_0157422_1030_1491 140
56 3300005543 Ga0070672_100816528 Ga0070672_1008165282 141
57 3300044683 Ga0466965_0007468 Ga0466965_0007468_2060_2506 141
58 3300045049 Ga0466959_0079685 Ga0466959_0079685_40_489 141
59 iso_pu_bacteria 2643221669 2644381604 141
60 3300010375 Ga0105239_12127705 Ga0105239_121277052 142
61 3300013105 Ga0157369_10358871 Ga0157369_103588713 142
62 3300025929 Ga0207664_10317489 Ga0207664_103174892 142
63 3300042004 Ga0439445_0049008 Ga0439445_0049008_347_781 142
64 iso_pu_bacteria 2808606365 2808875338 142
65 3300031901 Ga0307406_10000126 Ga0307406_1000012630 143
66 iso_pu_bacteria 2643221679 2644444497 143
67 3300009036 Ga0105244_10018464 Ga0105244_100184643 144
68 3300009551 Ga0105238_10454304 Ga0105238_104543042 144
69 3300025728 Ga0207655_1001398 Ga0207655_100139818 144
70 3300025935 Ga0207709_10011370 Ga0207709_100113705 144
71 3300005337 Ga0070682_101249343 Ga0070682_1012493431 146
72 3300005366 Ga0070659_100525396 Ga0070659_1005253961 146
73 3300005458 Ga0070681_11379923 Ga0070681_113799231 146
74 3300005530 Ga0070679_100204963 Ga0070679_1002049632 146
75 3300013104 Ga0157370_10860894 Ga0157370_108608942 146
76 3300013105 Ga0157369_10045139 Ga0157369_100451393 146
77 3300013307 Ga0157372_10465817 Ga0157372_104658172 146
78 3300013307 Ga0157372_10520323 Ga0157372_105203232 146
79 3300025912 Ga0207707_10407737 Ga0207707_104077372 146
80 3300025921 Ga0207652_10215846 Ga0207652_102158463 146
81 3300031731 Ga0307405_10396436 Ga0307405_103964361 146
82 3300031824 Ga0307413_10021203 Ga0307413_100212032 146
83 3300031852 Ga0307410_10002146 Ga0307410_100021468 146
84 3300031852 Ga0307410_11347753 Ga0307410_113477531 146
85 3300031901 Ga0307406_10090781 Ga0307406_100907811 146
86 3300031901 Ga0307406_10459738 Ga0307406_104597382 146
87 3300031903 Ga0307407_10060897 Ga0307407_100608973 146
88 3300031911 Ga0307412_10084799 Ga0307412_100847992 146
89 3300031995 Ga0307409_100004789 Ga0307409_1000047893 146
90 3300032002 Ga0307416_100052666 Ga0307416_1000526663 146
91 3300032126 Ga0307415_100085551 Ga0307415_1000855512 146
92 3300049569 Ga0501032_0550387 Ga0501032_0550387_72_524 146
93 3300049570 Ga0501033_0014913 Ga0501033_0014913_899_1354 146
94 3300049570 Ga0501033_0413711 Ga0501033_0413711_410_862 146
95 3300049572 Ga0501036_0002781 Ga0501036_0002781_9833_10288 146
96 3300049573 Ga0501037_0105944 Ga0501037_0105944_456_908 146
97 3300049575 Ga0501039_0010529 Ga0501039_0010529_2557_3012 146
98 3300049576 Ga0501040_0268083 Ga0501040_0268083_187_639 146
99 3300049577 Ga0501041_0017836 Ga0501041_0017836_2699_3154 146
100 3300049577 Ga0501041_0283732 Ga0501041_0283732_522_974 146
101 3300049577 Ga0501041_0550949 Ga0501041_0550949_69_521 146
102 3300049578 Ga0501042_0001441 Ga0501042_0001441_7773_8228 146
103 3300049578 Ga0501042_0451153 Ga0501042_0451153_253_705 146
104 3300049579 Ga0501043_0014797 Ga0501043_0014797_4450_4905 146
105 3300049580 Ga0501046_0266986 Ga0501046_0266986_239_691 146
106 3300049582 Ga0501048_0005106 Ga0501048_0005106_796_1251 146
107 3300049582 Ga0501048_1177698 Ga0501048_1177698_26_478 146
108 3300049584 Ga0501068_0086524 Ga0501068_0086524_897_1352 146
109 3300049585 Ga0501069_0247358 Ga0501069_0247358_64_516 146
110 3300049587 Ga0501071_0016721 Ga0501071_0016721_756_1211 146
111 3300049587 Ga0501071_0510465 Ga0501071_0510465_301_753 146
112 3300049590 Ga0501074_0028468 Ga0501074_0028468_2313_2768 146
113 3300049592 Ga0501076_0330006 Ga0501076_0330006_70_525 146
114 3300049592 Ga0501076_0681219 Ga0501076_0681219_351_803 146
115 3300049593 Ga0501077_0004056 Ga0501077_0004056_3619_4074 146
116 3300049741 Ga0501079_0012352 Ga0501079_0012352_1217_1672 146
117 3300049742 Ga0501080_0073178 Ga0501080_0073178_539_994 146
118 3300049743 Ga0501081_0274456 Ga0501081_0274456_276_731 146
119 3300049824 Ga0501045_0154604 Ga0501045_0154604_1190_1642 146
120 3300049824 Ga0501045_0563632 Ga0501045_0563632_78_530 146
121 3300054114 Ga0501084_0068561 Ga0501084_0068561_1642_2097 146
122 3300054114 Ga0501084_0556453 Ga0501084_0556453_393_845 146
123 3300060353 Ga0501082_0061958 Ga0501082_0061958_239_694 146
124 3300061734 Ga0530510_0007465 Ga0530510_0007465_6559_7014 146
125 iso_pu_bacteria 2643221567 2643852782 146
126 iso_pu_bacteria 2643221624 2644135292 146
127 3300005616 Ga0068852_101133263 Ga0068852_1011332632 147
128 3300009174 Ga0105241_10182731 Ga0105241_101827312 147
129 3300026142 Ga0207698_11561493 Ga0207698_115614932 147
130 3300038443 Ga0395901_0223608 Ga0395901_0223608_278_733 147
131 3300044901 Ga0466960_0040162 Ga0466960_0040162_672_1130 147
132 3300045976 Ga0466967_0096328 Ga0466967_0096328_2044_2511 147
133 3300049584 Ga0501068_0712778 Ga0501068_0712778_100_558 147
134 3300005329 Ga0070683_100531875 Ga0070683_1005318752 148
135 3300005366 Ga0070659_100398390 Ga0070659_1003983902 148
136 3300005535 Ga0070684_100824143 Ga0070684_1008241432 148
137 3300005614 Ga0068856_100006354 Ga0068856_1000063543 148
138 3300005616 Ga0068852_100174300 Ga0068852_1001743003 148
139 3300025981 Ga0207640_11066232 Ga0207640_110662322 148
140 3300026078 Ga0207702_10012258 Ga0207702_100122582 148
141 3300026142 Ga0207698_10619204 Ga0207698_106192042 148
142 3300035691 Ga0373931_1083536 Ga0373931_1083536_10_471 148
143 3300048909 Ga0496106_0878643 Ga0496106_0878643_46_504 148
144 3300005434 Ga0070709_11117502 Ga0070709_111175021 149
145 3300037418 Ga0395900_0205061 Ga0395900_0205061_280_741 149
146 3300037466 Ga0395898_0111628 Ga0395898_0111628_1390_1851 149
147 3300038443 Ga0395901_0002167 Ga0395901_0002167_6724_7185 149
148 3300046511 Ga0495608_0850718 Ga0495608_0850718_57_518 149
149 3300046559 Ga0495667_0101651 Ga0495667_0101651_1219_1686 149
150 3300046663 Ga0495635_0202734 Ga0495635_0202734_262_723 149
151 3300046675 Ga0495657_0309345 Ga0495657_0309345_339_800 149
152 3300047321 Ga0495676_0105170 Ga0495676_0105170_1099_1566 149
153 3300047673 Ga0495593_0112521 Ga0495593_0112521_683_1150 149
154 3300048904 Ga0496101_0347959 Ga0496101_0347959_633_1094 149
155 3300048904 Ga0496101_0541778 Ga0496101_0541778_438_905 149
156 3300048905 Ga0496102_0002996 Ga0496102_0002996_9437_9898 149
157 3300048905 Ga0496102_0031750 Ga0496102_0031750_286_753 149
158 3300048906 Ga0496103_0293142 Ga0496103_0293142_219_680 149
159 3300048906 Ga0496103_0581249 Ga0496103_0581249_86_547 149
160 3300048909 Ga0496106_0043424 Ga0496106_0043424_1952_2428 149
161 3300048917 Ga0496114_0005951 Ga0496114_0005951_6420_6881 149
162 3300048917 Ga0496114_0037885 Ga0496114_0037885_3276_3737 149
163 3300059490 Ga0587066_116321 Ga0587066_116321_66_527 149
164 3300059630 Ga0587128_018927 Ga0587128_018927_442_903 149
165 3300059645 Ga0587076_039678 Ga0587076_039678_281_742 149
166 3300059655 Ga0587114_016905 Ga0587114_016905_376_837 149
167 iso_pu_bacteria 2919446982 2919447744 149
168 3300013105 Ga0157369_10420510 Ga0157369_104205102 150
169 3300013307 Ga0157372_10203103 Ga0157372_102031032 150
170 3300020082 Ga0206353_12032663 Ga0206353_120326632 150
171 3300026078 Ga0207702_10192150 Ga0207702_101921502 150
172 3300005329 Ga0070683_100995183 Ga0070683_1009951831 151
173 3300020070 Ga0206356_10595526 Ga0206356_105955261 151
174 3300025944 Ga0207661_10323400 Ga0207661_103234002 151
175 3300037068 Ga0373925_1415087 Ga0373925_1415087_52_528 151
176 3300053085 Ga0495619_0256906 Ga0495619_0256906_696_1181 151
177 3300001989 JGI24739J22299_10174515 JGI24739J22299_101745151 152
178 3300001990 JGI24737J22298_10066493 JGI24737J22298_100664932 152
179 3300005327 Ga0070658_10881936 Ga0070658_108819362 152
180 3300005329 Ga0070683_100794935 Ga0070683_1007949352 152
181 3300005339 Ga0070660_100476883 Ga0070660_1004768831 152
182 3300005344 Ga0070661_100262436 Ga0070661_1002624362 152
183 3300005456 Ga0070678_100509761 Ga0070678_1005097611 152
184 3300005456 Ga0070678_101119206 Ga0070678_1011192061 152
185 3300005458 Ga0070681_11081584 Ga0070681_110815842 152
186 3300009098 Ga0105245_10310206 Ga0105245_103102063 152
187 3300009148 Ga0105243_10165298 Ga0105243_101652983 152
188 3300009176 Ga0105242_10508850 Ga0105242_105088501 152
189 3300009551 Ga0105238_10644696 Ga0105238_106446962 152
190 3300009551 Ga0105238_10913852 Ga0105238_109138522 152
191 3300011119 Ga0105246_10141430 Ga0105246_101414303 152
192 3300011119 Ga0105246_10166602 Ga0105246_101666022 152
193 3300013306 Ga0163162_10294584 Ga0163162_102945842 152
194 3300013308 Ga0157375_10265513 Ga0157375_102655133 152
195 3300020076 Ga0206355_1312688 Ga0206355_13126881 152
196 3300020078 Ga0206352_10707666 Ga0206352_107076662 152
197 3300022467 Ga0224712_10142284 Ga0224712_101422842 152
198 3300025901 Ga0207688_10103777 Ga0207688_101037772 152
199 3300025904 Ga0207647_10394914 Ga0207647_103949142 152
200 3300025919 Ga0207657_10212668 Ga0207657_102126682 152
201 3300025920 Ga0207649_10785593 Ga0207649_107855931 152
202 3300025932 Ga0207690_10300348 Ga0207690_103003482 152
203 3300025949 Ga0207667_10526164 Ga0207667_105261641 152
204 3300026121 Ga0207683_10318795 Ga0207683_103187952 152
205 3300041453 Ga0451797_0369639 Ga0451797_0369639_411_884 152
206 3300041491 Ga0451833_0338870 Ga0451833_0338870_95_568 152
207 3300041509 Ga0451843_0612281 Ga0451843_0612281_754_1227 152
208 3300044706 Ga0466964_0514355 Ga0466964_0514355_144_626 152
209 3300046463 Ga0495653_0216606 Ga0495653_0216606_468_947 152
210 3300046476 Ga0495662_0099649 Ga0495662_0099649_697_1176 152
211 3300046511 Ga0495608_0190750 Ga0495608_0190750_68_547 152
212 3300047315 Ga0495581_0103808 Ga0495581_0103808_461_940 152
213 3300047322 Ga0495680_0120822 Ga0495680_0120822_362_841 152
214 3300047444 Ga0495675_0191702 Ga0495675_0191702_673_1152 152
215 3300048906 Ga0496103_0143637 Ga0496103_0143637_132_611 152
216 3300048912 Ga0496109_0299974 Ga0496109_0299974_67_546 152
217 3300048913 Ga0496110_0139413 Ga0496110_0139413_808_1287 152
218 3300048916 Ga0496113_0318210 Ga0496113_0318210_356_835 152
219 3300048917 Ga0496114_0226484 Ga0496114_0226484_820_1299 152
220 3300048918 Ga0496115_0527357 Ga0496115_0527357_403_882 152
221 3300059492 Ga0587073_0039687 Ga0587073_0039687_103_576 152
222 3300059492 Ga0587073_0065515 Ga0587073_0065515_254_730 152
223 3300059493 Ga0587077_070748 Ga0587077_070748_207_680 152
224 3300059504 Ga0587082_015402 Ga0587082_015402_447_920 152
225 3300059506 Ga0587085_057227 Ga0587085_057227_43_516 152
226 3300059506 Ga0587085_118673 Ga0587085_118673_70_543 152
227 3300059508 Ga0587088_012851 Ga0587088_012851_341_817 152
228 3300059510 Ga0587090_036564 Ga0587090_036564_334_810 152
229 3300059623 Ga0587101_021260 Ga0587101_021260_319_792 152
230 3300059626 Ga0587115_090625 Ga0587115_090625_68_538 152
231 3300059628 Ga0587122_022873 Ga0587122_022873_47_517 152
232 3300059630 Ga0587128_016454 Ga0587128_016454_445_918 152
233 3300059631 Ga0587130_012925 Ga0587130_012925_43_516 152
234 3300059639 Ga0587062_036994 Ga0587062_036994_242_712 152
235 3300059641 Ga0587068_085027 Ga0587068_085027_34_507 152
236 3300059642 Ga0587069_054566 Ga0587069_054566_201_674 152
237 3300059648 Ga0587100_012163 Ga0587100_012163_22_495 152
238 3300059655 Ga0587114_045004 Ga0587114_045004_111_584 152
239 3300060344 Ga0587071_028246 Ga0587071_028246_171_644 152
240 3300060344 Ga0587071_067948 Ga0587071_067948_17_487 152
241 3300001989 JGI24739J22299_10118510 JGI24739J22299_101185102 153
242 3300005327 Ga0070658_11413682 Ga0070658_114136821 153
243 3300020076 Ga0206355_1541619 Ga0206355_15416192 153
244 3300022467 Ga0224712_10125742 Ga0224712_101257422 153
245 3300022467 Ga0224712_10203173 Ga0224712_102031732 153
246 3300031824 Ga0307413_10364387 Ga0307413_103643871 153
247 3300038443 Ga0395901_0304346 Ga0395901_0304346_335_796 153
248 3300059491 Ga0587070_053795 Ga0587070_053795_151_630 153
249 3300059503 Ga0587080_041983 Ga0587080_041983_216_695 153
250 3300059505 Ga0587083_0055903 Ga0587083_0055903_256_735 153
251 3300059508 Ga0587088_037496 Ga0587088_037496_216_695 153
252 3300059509 Ga0587089_028668 Ga0587089_028668_142_621 153
253 3300059511 Ga0587091_016763 Ga0587091_016763_384_860 153
254 3300059512 Ga0587092_041355 Ga0587092_041355_143_622 153
255 3300059513 Ga0587094_011983 Ga0587094_011983_437_916 153
256 3300059605 Ga0587106_020098 Ga0587106_020098_109_588 153
257 3300059607 Ga0587125_032425 Ga0587125_032425_45_521 153
258 3300059639 Ga0587062_020190 Ga0587062_020190_287_766 153
259 3300059641 Ga0587068_045208 Ga0587068_045208_193_672 153
260 3300059642 Ga0587069_046604 Ga0587069_046604_143_622 153
261 3300059643 Ga0587072_052716 Ga0587072_052716_208_687 153
262 3300059644 Ga0587075_025742 Ga0587075_025742_118_597 153
263 3300059645 Ga0587076_075748 Ga0587076_075748_107_586 153
264 3300059647 Ga0587079_063824 Ga0587079_063824_187_666 153
265 3300059647 Ga0587079_109560 Ga0587079_109560_26_502 153

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01127

Sdh_cyt

Succinate dehydrogenase/Fumarate reductase transmembrane subunit

2

124

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
4yxd-assembly1.cif.gz_D crystal structure of porcine heart mitochondrial complex ii bound with flutolanil 0.868 32 137
3abv-assembly1.cif.gz_D crystal structure of porcine heart mitochondrial complex ii bound with n-biphenyl-3-yl-2-trifluoromethyl-benzamide 0.8632 32 136
4ytp-assembly1.cif.gz_D crystal structure of porcine heart mitochondrial complex ii bound with n-[(4-tert-butylphenyl)methyl]-2-(trifluoromethyl)benzamide 0.8604 28 136
8gs8-assembly1.cif.gz_D cryo-em structure of the human respiratory complex ii 0.8533 26 137
6lo8-assembly1.cif.gz_D cryo-em structure of the tim22 complex from yeast 0.8502 33 134
ID Description Score Start End Superfamily
3aeaD00 Mainly Alpha;Up-down Bundle;3 helical TM bundles of succinate and fumarate reductases;Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.8835 32 136 1.20.1300.10
1zoyD00 Mainly Alpha;Up-down Bundle;3 helical TM bundles of succinate and fumarate reductases;Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.8807 29 136 1.20.1300.10
3ae7D00 Mainly Alpha;Up-down Bundle;3 helical TM bundles of succinate and fumarate reductases;Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.8799 32 136 1.20.1300.10
3aebD00 Mainly Alpha;Up-down Bundle;3 helical TM bundles of succinate and fumarate reductases;Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.8773 32 137 1.20.1300.10
3sfdD00 Mainly Alpha;Up-down Bundle;3 helical TM bundles of succinate and fumarate reductases;Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.8663 32 136 1.20.1300.10
ID Description Score Start End GO Terms
AF-A0A2D7IDV7-F1-model_v4 Succinate dehydrogenase hydrophobic membrane anchor subunit 0.9089 31 136 GO:0006099
GO:0016020
GO:0020037
GO:0046872
AF-A0A7C1XCN8-F1-model_v4 Succinate dehydrogenase hydrophobic membrane anchor subunit 0.8881 32 136 GO:0005886
GO:0006099
GO:0009055
GO:0017004
GO:0020037
GO:0046872
AF-A0A0S8A6Z4-F1-model_v4 Succinate dehydrogenase hydrophobic membrane anchor subunit 0.8808 32 137 GO:0005886
GO:0006099
GO:0009055
GO:0017004
GO:0020037
GO:0046872
AF-A0A5C7WLX9-F1-model_v4 Succinate dehydrogenase hydrophobic membrane anchor subunit 0.8744 34 139 GO:0005886
GO:0006099
GO:0009055
GO:0017004
GO:0020037
GO:0046872
AF-A0A1Z4VSB4-F1-model_v4 Succinate dehydrogenase hydrophobic membrane anchor subunit 0.8724 26 136 GO:0005886
GO:0006099
GO:0009055
GO:0017004
GO:0020037
GO:0046872

Feature Viewer

pLDDT pTM Quality
78.38 0.67 Medium
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Predicted Structure (AlphaFold2)

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