F373152

General Info

Members Datasets Scaffolds Average Seq Length
265 148 530 331

Family's Representative Sequence

Representative Sequence 3300005457|Ga0070662_100001322|Ga0070662_10000132215
Length 386
Sequence VRRLFRMFVAACLYLAFGPAGVLFAQGAPTSAQLEFAKHADRLRPGQWVWAPAIAPTGPVLVYVDLSRQLATVYRNGVRIGVSTISSGKDGHETPTGVFTILEKNKEHRSKTYDDASMPYQQRLTWMGVAMHAGNLPGFPASHGCVRLPMEFAKKLFEVTPMGGTVVIAGGHEDPVKRDAAGVLAPPMSGVTPAPATPLTAEGTFTWNPDASPSGPVSIIISTGDQQVVVLRNGVEIGRAHAVVQQQTSQPQVMTFAGGTTPQWIQVGVSDLTQEPAEIISTERVEQMHLPAAFVTGMRSVITPGTTVLVTQAAVDSGSTGSQATVLDAEDSSRRINSACAPDAGRSENPKALQGRREEAAGARAPSDTRSRNRKKDRLNRATGNP

Samples

Sample ID Description Type Environment
1 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
4 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
9 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
10 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
11 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
12 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
13 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
14 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
15 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
16 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
17 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
18 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
19 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
20 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
21 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
22 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
23 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
24 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
25 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
26 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
27 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
28 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
29 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
30 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
31 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
32 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
33 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
34 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
35 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
36 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
37 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
38 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
39 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
40 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
43 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
44 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
45 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
46 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
47 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
48 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
49 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
50 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
51 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
52 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
53 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
54 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
55 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
56 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
57 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
58 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
59 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
60 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
93 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
94 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
95 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
96 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
97 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
98 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
99 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
100 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
101 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
102 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
103 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
104 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
105 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
106 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
107 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
108 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
109 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
110 3300042142 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_072516_1610 Metagenome Rhizosphere
111 3300042144 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624F_E14_070516_89 Metagenome Rhizosphere
112 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
113 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
114 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
115 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
116 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
117 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
118 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
119 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
120 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
121 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
122 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
123 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
124 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
125 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
126 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
127 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
128 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
129 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
130 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
131 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
132 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
133 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
134 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
135 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
136 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
137 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
138 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
139 3300049656 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G3_B_0_drought Metagenome Rhizosphere
140 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
141 3300049765 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_B_4_drought Metagenome Rhizosphere
142 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
143 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
144 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
145 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere
146 2510917021 Novosphingobium sp. AP12 Isolate Rhizosphere
147 2643221598 Phenylobacterium sp. Root700 Isolate Unclassified
148 2857553236 Duganella sp. R-74557 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 97.74
Metatranscriptomes 1.13
Isolates 1.13

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.75
Nodule 0
Rhizoplane 4.15
Rhizosphere 93.21
Stem 0
Stem Tuber 0
Unclassified 2.26

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070662_100001322 3300005457 Bacteria 15228
2 JGI24740J21852_10001124 3300001979 Bacteria 12111
3 JGI24737J22298_10047827 3300001990 Bacteria 1303
4 JGI24751J29686_10014690 3300002459 Unclassified 1615
5 Ga0070658_10004572 3300005327 Bacteria 11242
6 Ga0070658_10168172 3300005327 Bacteria 1841
7 Ga0070683_100132686 3300005329 Bacteria 2357
8 Ga0070670_100007058 3300005331 Bacteria 9524
9 Ga0070670_100013884 3300005331 Bacteria 6907
10 Ga0070670_100066056 3300005331 Bacteria 3103
11 Ga0070670_100067949 3300005331 Bacteria 3058
12 Ga0070670_100077147 3300005331 Bacteria 2863
13 Ga0070670_100096695 3300005331 Bacteria 2540
14 Ga0070666_10003175 3300005335 Bacteria 9985
15 Ga0070680_100031231 3300005336 Bacteria 4282
16 Ga0070680_100107137 3300005336 Bacteria 2324
17 Ga0068868_100126258 3300005338 Bacteria 2090
18 Ga0070660_100018454 3300005339 Bacteria 5097
19 Ga0070660_100072896 3300005339 Bacteria 2684
20 Ga0070660_100080028 3300005339 Bacteria 2563
21 Ga0070660_100185833 3300005339 Bacteria 1683
22 Ga0070661_100003053 3300005344 Bacteria 11517
23 Ga0070661_100008206 3300005344 Bacteria 7202
24 Ga0070692_10072334 3300005345 Bacteria 1840
25 Ga0070675_100010249 3300005354 Bacteria 7312
26 Ga0070675_100037836 3300005354 Bacteria 3932
27 Ga0070671_100000337 3300005355 Bacteria 32248
28 Ga0070671_100002147 3300005355 Bacteria 15233
29 Ga0070671_100196644 3300005355 Bacteria 1709
30 Ga0070674_100066960 3300005356 Bacteria 2525
31 Ga0070674_100139253 3300005356 Bacteria 1819
32 Ga0070673_100000382 3300005364 Bacteria 23334
33 Ga0070659_100010373 3300005366 Bacteria 6851
34 Ga0070659_100129366 3300005366 Bacteria 2050
35 Ga0070663_100180220 3300005455 Bacteria 1638
36 Ga0070678_100028842 3300005456 Unclassified 3791
37 Ga0070678_100096025 3300005456 Bacteria 2285
38 Ga0070662_100106438 3300005457 Bacteria 2130
39 Ga0070681_10094553 3300005458 Bacteria 2937
40 Ga0070681_10150429 3300005458 Bacteria 2254
41 Ga0068867_100194484 3300005459 Bacteria 1620
42 Ga0070679_100025279 3300005530 Bacteria 5825
43 Ga0070679_100136349 3300005530 Bacteria 2435
44 Ga0070679_100438304 3300005530 Bacteria 1251
45 Ga0068853_100017597 3300005539 Bacteria 5899
46 Ga0068853_100041976 3300005539 Bacteria 3908
47 Ga0070672_100035224 3300005543 Bacteria 3804
48 Ga0070696_100006945 3300005546 Bacteria 7558
49 Ga0070665_100101685 3300005548 Bacteria 2878
50 Ga0070665_100281868 3300005548 Bacteria 1664
51 Ga0068855_100058853 3300005563 Bacteria 4498
52 Ga0070664_100003100 3300005564 Bacteria 13446
53 Ga0070664_100004457 3300005564 Bacteria 11246
54 Ga0070664_100067551 3300005564 Bacteria 3055
55 Ga0070664_100120068 3300005564 Bacteria 2301
56 Ga0068857_100003842 3300005577 Bacteria 12633
57 Ga0068854_100026873 3300005578 Bacteria 3960
58 Ga0068856_100025581 3300005614 Bacteria 5756
59 Ga0068852_100021399 3300005616 Bacteria 5163
60 Ga0068852_100054534 3300005616 Bacteria 3446
61 Ga0068852_100143154 3300005616 Bacteria 2215
62 Ga0068859_100309902 3300005617 Bacteria 1672
63 Ga0068864_100033121 3300005618 Unclassified 4392
64 Ga0068864_100069331 3300005618 Bacteria 3066
65 Ga0068863_100010395 3300005841 Bacteria 9044
66 Ga0068863_100102060 3300005841 Bacteria 2727
67 Ga0068858_100001926 3300005842 Bacteria 21164
68 Ga0068858_100011411 3300005842 Bacteria 8388
69 Ga0068860_100262654 3300005843 Bacteria 1683
70 Ga0068871_100084923 3300006358 Bacteria 2627
71 Ga0068871_100101345 3300006358 Bacteria 2413
72 Ga0068871_100136890 3300006358 Bacteria 2080
73 Ga0097620_100309909 3300006931 Bacteria 1672
74 Ga0111539_10090385 3300009094 Bacteria 3598
75 Ga0105248_10001492 3300009177 Bacteria 26034
76 Ga0105248_10074795 3300009177 Bacteria 3807
77 Ga0157373_10017807 3300013100 Bacteria 5173
78 Ga0157373_10041486 3300013100 Bacteria 3292
79 Ga0157373_10137112 3300013100 Bacteria 1721
80 Ga0157371_10008866 3300013102 Bacteria 7964
81 Ga0157371_10025364 3300013102 Bacteria 4321
82 Ga0157370_10015463 3300013104 Bacteria 7757
83 Ga0157369_10074227 3300013105 Bacteria 3648
84 Ga0157369_10104983 3300013105 Bacteria 3008
85 Ga0157369_10243539 3300013105 Bacteria 1878
86 Ga0157374_10042835 3300013296 Bacteria 4179
87 Ga0157378_10038554 3300013297 Bacteria 4235
88 Ga0163162_10003177 3300013306 Bacteria 15711
89 Ga0157372_10075440 3300013307 Bacteria 3805
90 Ga0157375_10029221 3300013308 Bacteria 5181
91 Ga0157375_10045350 3300013308 Bacteria 4278
92 Ga0163163_10031977 3300014325 Bacteria 5081
93 Ga0163163_10033648 3300014325 Bacteria 4959
94 Ga0182008_10090467 3300014497 Bacteria 1508
95 Ga0182006_1000117 3300015261 Bacteria 85963
96 Ga0182005_1000041 3300015265 Bacteria 150123
97 Ga0206356_10227731 3300020070 Bacteria 2021
98 Ga0206354_11220416 3300020081 Bacteria 2091
99 Ga0206353_10772678 3300020082 Bacteria 3068
100 Ga0213876_10022125 3300021384 Bacteria 3363
101 Ga0207688_10157845 3300025901 Unclassified 1343
102 Ga0207688_10215091 3300025901 Unclassified 1156
103 Ga0207705_10001533 3300025909 Bacteria 18332
104 Ga0207705_10004397 3300025909 Bacteria 10647
105 Ga0207707_10002708 3300025912 Bacteria 15833
106 Ga0207707_10143635 3300025912 Bacteria 2086
107 Ga0207695_10202614 3300025913 Bacteria 1898
108 Ga0207660_10001499 3300025917 Bacteria 15733
109 Ga0207660_10005644 3300025917 Bacteria 8121
110 Ga0207660_10278811 3300025917 Bacteria 1326
111 Ga0207657_10006131 3300025919 Bacteria 12493
112 Ga0207657_10025437 3300025919 Bacteria 5460
113 Ga0207657_10048137 3300025919 Bacteria 3723
114 Ga0207657_10107231 3300025919 Bacteria 2311
115 Ga0207657_10187266 3300025919 Bacteria 1671
116 Ga0207649_10014640 3300025920 Bacteria 4396
117 Ga0207652_10006152 3300025921 Bacteria 9703
118 Ga0207652_10037366 3300025921 Bacteria 4110
119 Ga0207652_10044153 3300025921 Bacteria 3796
120 Ga0207650_10013037 3300025925 Bacteria 5749
121 Ga0207650_10014302 3300025925 Bacteria 5514
122 Ga0207650_10031398 3300025925 Bacteria 3836
123 Ga0207650_10037862 3300025925 Bacteria 3518
124 Ga0207650_10041028 3300025925 Bacteria 3389
125 Ga0207650_10052639 3300025925 Bacteria 3016
126 Ga0207659_10018448 3300025926 Bacteria 4574
127 Ga0207659_10112454 3300025926 Bacteria 2072
128 Ga0207644_10002712 3300025931 Bacteria 11412
129 Ga0207644_10027511 3300025931 Bacteria 3928
130 Ga0207690_10017743 3300025932 Bacteria 4352
131 Ga0207690_10021295 3300025932 Bacteria 4019
132 Ga0207690_10027023 3300025932 Bacteria 3622
133 Ga0207690_10102441 3300025932 Bacteria 2047
134 Ga0207706_10003005 3300025933 Bacteria 16255
135 Ga0207706_10004410 3300025933 Bacteria 13224
136 Ga0207706_10273313 3300025933 Bacteria 1474
137 Ga0207669_10073931 3300025937 Bacteria 2153
138 Ga0207691_10002991 3300025940 Bacteria 16490
139 Ga0207691_10063664 3300025940 Bacteria 3344
140 Ga0207711_10007242 3300025941 Bacteria 9298
141 Ga0207711_10095649 3300025941 Bacteria 2620
142 Ga0207661_10156132 3300025944 Bacteria 1977
143 Ga0207679_10008141 3300025945 Bacteria 6670
144 Ga0207679_10017662 3300025945 Bacteria 4763
145 Ga0207679_10231406 3300025945 Bacteria 1561
146 Ga0207667_10037567 3300025949 Bacteria 5176
147 Ga0207667_10055714 3300025949 Bacteria 4156
148 Ga0207667_10101666 3300025949 Bacteria 2965
149 Ga0207651_10116675 3300025960 Bacteria 2015
150 Ga0207640_10031960 3300025981 Bacteria 3259
151 Ga0207640_10047496 3300025981 Bacteria 2769
152 Ga0207640_10126781 3300025981 Bacteria 1839
153 Ga0207677_10278710 3300026023 Bacteria 1371
154 Ga0207703_10073121 3300026035 Bacteria 2835
155 Ga0207639_10016883 3300026041 Bacteria 5172
156 Ga0207678_10001633 3300026067 Bacteria 20554
157 Ga0207678_10030686 3300026067 Bacteria 4693
158 Ga0207678_10347688 3300026067 Bacteria 1278
159 Ga0207702_10095930 3300026078 Bacteria 2607
160 Ga0207648_10113995 3300026089 Bacteria 2375
161 Ga0207676_10004215 3300026095 Bacteria 10156
162 Ga0207676_10025860 3300026095 Bacteria 4359
163 Ga0207674_10000338 3300026116 Bacteria 60092
164 Ga0207674_10007752 3300026116 Bacteria 12492
165 Ga0207674_10130322 3300026116 Bacteria 2479
166 Ga0207674_10206441 3300026116 Bacteria 1914
167 Ga0207683_10003139 3300026121 Bacteria 14435
168 Ga0207683_10007785 3300026121 Bacteria 9168
169 Ga0207698_10005130 3300026142 Bacteria 8050
170 Ga0207698_10032922 3300026142 Bacteria 3760
171 Ga0268266_10035176 3300028379 Bacteria 4261
172 Ga0268266_10247779 3300028379 Bacteria 1647
173 Ga0307408_100098080 3300031548 Bacteria 2227
174 Ga0307405_10290488 3300031731 Bacteria 1235
175 Ga0307413_10048131 3300031824 Bacteria 2547
176 Ga0307410_10008045 3300031852 Bacteria 5821
177 Ga0307410_10048058 3300031852 Bacteria 2855
178 Ga0307410_10117041 3300031852 Bacteria 1937
179 Ga0307406_10005641 3300031901 Bacteria 6842
180 Ga0307412_10244724 3300031911 Bacteria 1389
181 Ga0307409_100004548 3300031995 Bacteria 7818
182 Ga0307416_100108921 3300032002 Bacteria 2435
183 Ga0307414_10066235 3300032004 Bacteria 2581
184 Ga0307414_10085835 3300032004 Bacteria 2320
185 Ga0307414_10155858 3300032004 Bacteria 1808
186 Ga0307414_10381827 3300032004 Bacteria 1218
187 Ga0307411_10068222 3300032005 Bacteria 2396
188 Ga0307415_100001978 3300032126 Bacteria 10082
189 Ga0307415_100006648 3300032126 Bacteria 6257
190 Ga0307415_100230497 3300032126 Bacteria 1491
191 Ga0373931_0087002 3300035691 Bacteria 1735
192 Ga0395899_0000224 3300037312 Bacteria 76706
193 Ga0395899_0010519 3300037312 Bacteria 7086
194 Ga0395899_0024662 3300037312 Bacteria 4545
195 Ga0395899_0043946 3300037312 Bacteria 3329
196 Ga0395899_0068256 3300037312 Bacteria 2607
197 Ga0395899_0262438 3300037312 Bacteria 1181
198 Ga0395900_0000294 3300037418 Bacteria 75260
199 Ga0395900_0020023 3300037418 Bacteria 6822
200 Ga0395900_0085785 3300037418 Bacteria 3235
201 Ga0395900_0167512 3300037418 Bacteria 2238
202 Ga0395898_0000192 3300037466 Bacteria 156121
203 Ga0395898_0006518 3300037466 Bacteria 12472
204 Ga0395898_0057453 3300037466 Bacteria 3791
205 Ga0395898_0492135 3300037466 Unclassified 1166
206 Ga0395905_0000066 3300037471 Bacteria 183121
207 Ga0395905_0000996 3300037471 Bacteria 36252
208 Ga0395905_0003461 3300037471 Bacteria 16880
209 Ga0395905_0005061 3300037471 Bacteria 13571
210 Ga0395905_0031312 3300037471 Bacteria 5008
211 Ga0395905_0043842 3300037471 Bacteria 4197
212 Ga0395905_0058943 3300037471 Bacteria 3589
213 Ga0395905_0094535 3300037471 Bacteria 2804
214 Ga0395905_0144466 3300037471 Bacteria 2238
215 Ga0395905_0452615 3300037471 Bacteria 1182
216 Ga0395901_0002833 3300038443 Bacteria 17513
217 Ga0395901_0011798 3300038443 Bacteria 8861
218 Ga0395901_0161849 3300038443 Bacteria 2350
219 Ga0395901_0178736 3300038443 Bacteria 2225
220 Ga0395901_0595399 3300038443 Bacteria 1115
221 Ga0436365_1810694 3300039437 Bacteria 7042
222 Ga0450905_010668 3300042142 Bacteria 1275
223 Ga0450889_000052 3300042144 Bacteria 10509
224 Ga0466963_0049075 3300044694 Bacteria 2791
225 Ga0466967_0043446 3300045976 Bacteria 3891
226 Ga0466967_0084798 3300045976 Bacteria 2867
227 Ga0495627_000008 3300046453 Bacteria 572150
228 Ga0495627_000782 3300046453 Bacteria 23477
229 Ga0495650_0012921 3300046471 Bacteria 4455
230 Ga0495607_0006453 3300046501 Bacteria 8254
231 Ga0495606_0171004 3300046507 Bacteria 1260
232 Ga0495610_0028137 3300046512 Bacteria 2977
233 Ga0495637_0000851 3300046520 Bacteria 20037
234 Ga0495643_0003145 3300046522 Bacteria 12288
235 Ga0495654_0000034 3300046530 Bacteria 196519
236 Ga0495609_0001239 3300046538 Bacteria 17585
237 Ga0495633_0012615 3300046558 Bacteria 4486
238 Ga0495625_0003707 3300046660 Bacteria 14913
239 Ga0495649_0038354 3300046694 Bacteria 2629
240 Ga0495660_0000219 3300046810 Bacteria 57585
241 Ga0495681_0001817 3300047470 Bacteria 15691
242 Ga0496101_0071290 3300048904 Bacteria 2547
243 Ga0496107_0016843 3300048910 Bacteria 5138
244 Ga0496107_0049547 3300048910 Bacteria 3027
245 Ga0496108_0032434 3300048911 Bacteria 4338
246 Ga0496109_0040609 3300048912 Bacteria 4213
247 Ga0496109_0167908 3300048912 Bacteria 2058
248 Ga0496111_0001927 3300048914 Bacteria 12272
249 Ga0496112_0012325 3300048915 Bacteria 7852
250 Ga0496113_0038155 3300048916 Bacteria 3531
251 Ga0496113_0042532 3300048916 Bacteria 3358
252 Ga0496115_0022090 3300048918 Bacteria 4923
253 Ga0496124_0034222 3300048927 Bacteria 4462
254 Ga0495678_000128 3300049459 Bacteria 89099
255 Ga0501071_0353960 3300049587 Bacteria 1118
256 Ga0501209_004691 3300049656 Bacteria 2399
257 Ga0501249_017788 3300049679 Bacteria 1533
258 Ga0501268_012318 3300049765 Bacteria 1365
259 Ga0501035_0071844 3300049822 Bacteria 3063
260 nmdc:mga08y16_181513_c1 3300050511 Bacteria 2185
261 Ga0500608_000351 3300053122 Bacteria 17772
262 Ga0500586_000056 3300053145 Bacteria 20046
263 2511127507 2510917021 Bacteria 5705459
264 2644000897 2643221598 Bacteria 4578346
265 2857554322 2857553236 Bacteria 6166726
266 Ga0070662_100001322
267 JGI24740J21852_10001124
268 JGI24737J22298_10047827
269 JGI24751J29686_10014690
270 Ga0070658_10004572
271 Ga0070658_10168172
272 Ga0070683_100132686
273 Ga0070670_100007058
274 Ga0070670_100013884
275 Ga0070670_100066056
276 Ga0070670_100067949
277 Ga0070670_100077147
278 Ga0070670_100096695
279 Ga0070666_10003175
280 Ga0070680_100031231
281 Ga0070680_100107137
282 Ga0068868_100126258
283 Ga0070660_100018454
284 Ga0070660_100072896
285 Ga0070660_100080028
286 Ga0070660_100185833
287 Ga0070661_100003053
288 Ga0070661_100008206
289 Ga0070692_10072334
290 Ga0070675_100010249
291 Ga0070675_100037836
292 Ga0070671_100000337
293 Ga0070671_100002147
294 Ga0070671_100196644
295 Ga0070674_100066960
296 Ga0070674_100139253
297 Ga0070673_100000382
298 Ga0070659_100010373
299 Ga0070659_100129366
300 Ga0070663_100180220
301 Ga0070678_100028842
302 Ga0070678_100096025
303 Ga0070662_100106438
304 Ga0070681_10094553
305 Ga0070681_10150429
306 Ga0068867_100194484
307 Ga0070679_100025279
308 Ga0070679_100136349
309 Ga0070679_100438304
310 Ga0068853_100017597
311 Ga0068853_100041976
312 Ga0070672_100035224
313 Ga0070696_100006945
314 Ga0070665_100101685
315 Ga0070665_100281868
316 Ga0068855_100058853
317 Ga0070664_100003100
318 Ga0070664_100004457
319 Ga0070664_100067551
320 Ga0070664_100120068
321 Ga0068857_100003842
322 Ga0068854_100026873
323 Ga0068856_100025581
324 Ga0068852_100021399
325 Ga0068852_100054534
326 Ga0068852_100143154
327 Ga0068859_100309902
328 Ga0068864_100033121
329 Ga0068864_100069331
330 Ga0068863_100010395
331 Ga0068863_100102060
332 Ga0068858_100001926
333 Ga0068858_100011411
334 Ga0068860_100262654
335 Ga0068871_100084923
336 Ga0068871_100101345
337 Ga0068871_100136890
338 Ga0097620_100309909
339 Ga0111539_10090385
340 Ga0105248_10001492
341 Ga0105248_10074795
342 Ga0157373_10017807
343 Ga0157373_10041486
344 Ga0157373_10137112
345 Ga0157371_10008866
346 Ga0157371_10025364
347 Ga0157370_10015463
348 Ga0157369_10074227
349 Ga0157369_10104983
350 Ga0157369_10243539
351 Ga0157374_10042835
352 Ga0157378_10038554
353 Ga0163162_10003177
354 Ga0157372_10075440
355 Ga0157375_10029221
356 Ga0157375_10045350
357 Ga0163163_10031977
358 Ga0163163_10033648
359 Ga0182008_10090467
360 Ga0182006_1000117
361 Ga0182005_1000041
362 Ga0206356_10227731
363 Ga0206354_11220416
364 Ga0206353_10772678
365 Ga0213876_10022125
366 Ga0207688_10157845
367 Ga0207688_10215091
368 Ga0207705_10001533
369 Ga0207705_10004397
370 Ga0207707_10002708
371 Ga0207707_10143635
372 Ga0207695_10202614
373 Ga0207660_10001499
374 Ga0207660_10005644
375 Ga0207660_10278811
376 Ga0207657_10006131
377 Ga0207657_10025437
378 Ga0207657_10048137
379 Ga0207657_10107231
380 Ga0207657_10187266
381 Ga0207649_10014640
382 Ga0207652_10006152
383 Ga0207652_10037366
384 Ga0207652_10044153
385 Ga0207650_10013037
386 Ga0207650_10014302
387 Ga0207650_10031398
388 Ga0207650_10037862
389 Ga0207650_10041028
390 Ga0207650_10052639
391 Ga0207659_10018448
392 Ga0207659_10112454
393 Ga0207644_10002712
394 Ga0207644_10027511
395 Ga0207690_10017743
396 Ga0207690_10021295
397 Ga0207690_10027023
398 Ga0207690_10102441
399 Ga0207706_10003005
400 Ga0207706_10004410
401 Ga0207706_10273313
402 Ga0207669_10073931
403 Ga0207691_10002991
404 Ga0207691_10063664
405 Ga0207711_10007242
406 Ga0207711_10095649
407 Ga0207661_10156132
408 Ga0207679_10008141
409 Ga0207679_10017662
410 Ga0207679_10231406
411 Ga0207667_10037567
412 Ga0207667_10055714
413 Ga0207667_10101666
414 Ga0207651_10116675
415 Ga0207640_10031960
416 Ga0207640_10047496
417 Ga0207640_10126781
418 Ga0207677_10278710
419 Ga0207703_10073121
420 Ga0207639_10016883
421 Ga0207678_10001633
422 Ga0207678_10030686
423 Ga0207678_10347688
424 Ga0207702_10095930
425 Ga0207648_10113995
426 Ga0207676_10004215
427 Ga0207676_10025860
428 Ga0207674_10000338
429 Ga0207674_10007752
430 Ga0207674_10130322
431 Ga0207674_10206441
432 Ga0207683_10003139
433 Ga0207683_10007785
434 Ga0207698_10005130
435 Ga0207698_10032922
436 Ga0268266_10035176
437 Ga0268266_10247779
438 Ga0307408_100098080
439 Ga0307405_10290488
440 Ga0307413_10048131
441 Ga0307410_10008045
442 Ga0307410_10048058
443 Ga0307410_10117041
444 Ga0307406_10005641
445 Ga0307412_10244724
446 Ga0307409_100004548
447 Ga0307416_100108921
448 Ga0307414_10066235
449 Ga0307414_10085835
450 Ga0307414_10155858
451 Ga0307414_10381827
452 Ga0307411_10068222
453 Ga0307415_100001978
454 Ga0307415_100006648
455 Ga0307415_100230497
456 Ga0373931_0087002
457 Ga0395899_0000224
458 Ga0395899_0010519
459 Ga0395899_0024662
460 Ga0395899_0043946
461 Ga0395899_0068256
462 Ga0395899_0262438
463 Ga0395900_0000294
464 Ga0395900_0020023
465 Ga0395900_0085785
466 Ga0395900_0167512
467 Ga0395898_0000192
468 Ga0395898_0006518
469 Ga0395898_0057453
470 Ga0395898_0492135
471 Ga0395905_0000066
472 Ga0395905_0000996
473 Ga0395905_0003461
474 Ga0395905_0005061
475 Ga0395905_0031312
476 Ga0395905_0043842
477 Ga0395905_0058943
478 Ga0395905_0094535
479 Ga0395905_0144466
480 Ga0395905_0452615
481 Ga0395901_0002833
482 Ga0395901_0011798
483 Ga0395901_0161849
484 Ga0395901_0178736
485 Ga0395901_0595399
486 Ga0436365_1810694
487 Ga0450905_010668
488 Ga0450889_000052
489 Ga0466963_0049075
490 Ga0466967_0043446
491 Ga0466967_0084798
492 Ga0495627_000008
493 Ga0495627_000782
494 Ga0495650_0012921
495 Ga0495607_0006453
496 Ga0495606_0171004
497 Ga0495610_0028137
498 Ga0495637_0000851
499 Ga0495643_0003145
500 Ga0495654_0000034
501 Ga0495609_0001239
502 Ga0495633_0012615
503 Ga0495625_0003707
504 Ga0495649_0038354
505 Ga0495660_0000219
506 Ga0495681_0001817
507 Ga0496101_0071290
508 Ga0496107_0016843
509 Ga0496107_0049547
510 Ga0496108_0032434
511 Ga0496109_0040609
512 Ga0496109_0167908
513 Ga0496111_0001927
514 Ga0496112_0012325
515 Ga0496113_0038155
516 Ga0496113_0042532
517 Ga0496115_0022090
518 Ga0496124_0034222
519 Ga0495678_000128
520 Ga0501071_0353960
521 Ga0501209_004691
522 Ga0501249_017788
523 Ga0501268_012318
524 Ga0501035_0071844
525 nmdc:mga08y16_181513_c1
526 Ga0500608_000351
527 Ga0500586_000056
528 2511127507
529 2644000897
530 2857554322

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03734

YkuD

L,D-transpeptidase catalytic domain

59

168

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
5uwv-assembly5.cif.gz_C crystal structure of mycobacterium abscessus l,d-transpeptidase 2 0.9177 58 167
3tur-assembly2.cif.gz_B crystal structure of m. tuberculosis ld-transpeptidase type 2 complexed with a peptidoglycan fragment 0.9114 58 167
5uwv-assembly2.cif.gz_A crystal structure of mycobacterium abscessus l,d-transpeptidase 2 0.911 58 167
6d51-assembly1.cif.gz_A crystal structure of l,d-transpeptidase 3 from mycobacterium tuberculosis in complex with a faropenem-derived adduct 0.9103 59 166
5uwv-assembly1.cif.gz_B crystal structure of mycobacterium abscessus l,d-transpeptidase 2 0.9084 59 167
ID Description Score Start End Superfamily
6d51A02 Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like 0.9103 59 166 2.40.440.10
5uwvD03 Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like 0.9057 59 167 2.40.440.10
4jmxA02 Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like 0.8776 59 167 2.40.440.10
6iywC02 Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like 0.8704 59 174 2.40.440.10
6d5aA03 Mainly Beta;Beta Barrel;L,D-transpeptidase catalytic domain-like;L,D-transpeptidase catalytic domain-like 0.8592 58 168 2.40.440.10
ID Description Score Start End GO Terms
AF-A0A2V5KK90-F1-model_v4 L,D-transpeptidase 0.9555 42 165 GO:0005576
GO:0008360
GO:0016740
GO:0018104
GO:0071555
GO:0071972
AF-A0A558QY02-F1-model_v4 L,D-transpeptidase family protein 0.9542 42 169 GO:0005576
GO:0008360
GO:0016740
GO:0018104
GO:0071555
GO:0071972
AF-A0A2N8HKE4-F1-model_v4 deleted 0.9538 59 167
AF-A0A0Q8RT77-F1-model_v4 L,D-TPase catalytic domain-containing protein 0.9531 42 168 GO:0005576
GO:0008360
GO:0016740
GO:0018104
GO:0071555
GO:0071972
AF-A0A0Q4K0S9-F1-model_v4 deleted 0.9526 42 167

Map