F371462

General Info

Members Datasets Scaffolds Average Seq Length
262 131 524 509

Family's Representative Sequence

Representative Sequence 3300050513|nmdc:mga0rr50_115705_c1|nmdc:mga0rr50_115705_c1_462_2060
Length 532
Sequence MAPVGDDREVTMRRPVPLRIVLLKPSKYGIDGAVERFRWGFMPNSTLPYLKSLTPAAVDGSPCEVLTVDEYVHTDLAYLDLLRRTEGKRTLLALVGVQSHQFHRALDLAALALSRGVENVIVGGPHPMTCDTSDHHGRGVSFALAEAEVIWPAILRDAVHGELQPTYGEEGRWGERLDPPALIPPSRRDLRRYAVRMLGVYPARGCPYVCNFCSVIKIAGRQVRSQPVATTIATLKAAAAAGVRLIMFTSDNFNKYPEVSELLAAMIEEKLRLPFFVQCDAQIHRQEELVAQLARAGCFQMFVGAESFSREALRGAHKLQNHPEHYARIVELCRAHGITSHFSNILGFPTDTEEGIREHAETLAALAPDVASFYVLTPIPGTEQYDDFLAESLITEDNLDRFDSTAVTWRHPRIAPDRLLELLFRCYRDFYTAGKITARLAAYARTRWDFRTAWGLQGIVAYGIQSRLAAAQRTHPMAGGTARVRRDCAADYLPLRRSRFGFDLAPLPRSLALTAADEEINRRAKLPIAATG

Samples

Sample ID Description Type Environment
1 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
2 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
9 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
10 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
11 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
12 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
13 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
14 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
15 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
16 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
17 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
18 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
19 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
20 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
21 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
22 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
23 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
24 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
25 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
26 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
27 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
28 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
29 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
30 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
31 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
32 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
33 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
34 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
35 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
36 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
37 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
38 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
39 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
40 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
41 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
42 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
43 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
44 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
45 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
46 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
47 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
48 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
49 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
50 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
51 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
52 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
53 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
54 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
55 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
56 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
57 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
58 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
59 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
60 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
61 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
62 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
63 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
64 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
65 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
66 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
67 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
68 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
69 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
70 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
71 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
72 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
95 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
99 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
100 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
101 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
102 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
103 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
104 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
105 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
106 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
107 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
108 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
109 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
110 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
111 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
112 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
113 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
114 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
115 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
116 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
117 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
118 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
119 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
120 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
121 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
122 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
123 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
125 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
126 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
127 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
128 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
129 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
130 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
131 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.62
Metatranscriptomes 0.38
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.53
Rhizosphere 95.04
Stem 0
Stem Tuber 0
Unclassified 8.4

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 nmdc:mga0rr50_115705_c1 3300050513 Bacteria 2128
2 Ga0065712_10073423 3300005290 Bacteria 4394
3 Ga0065712_10079877 3300005290 Bacteria 3163
4 Ga0070658_10013376 3300005327 Bacteria 6584
5 Ga0070690_100003001 3300005330 Bacteria 9141
6 Ga0070670_100013984 3300005331 Bacteria 6882
7 Ga0070670_100047180 3300005331 Unclassified 3706
8 Ga0070666_10002422 3300005335 Bacteria 11278
9 Ga0070666_10031197 3300005335 Unclassified 3517
10 Ga0070666_10035110 3300005335 Bacteria 3324
11 Ga0070680_100097652 3300005336 Bacteria 2436
12 Ga0068868_100001212 3300005338 Bacteria 17721
13 Ga0070689_100090134 3300005340 Bacteria 2416
14 Ga0070689_100170011 3300005340 Unclassified 1766
15 Ga0070661_100021256 3300005344 Bacteria 4632
16 Ga0070675_100000314 3300005354 Bacteria 32586
17 Ga0070675_100001938 3300005354 Bacteria 15311
18 Ga0070675_100004115 3300005354 Bacteria 11048
19 Ga0070675_100006328 3300005354 Bacteria 9090
20 Ga0070675_100013290 3300005354 Bacteria 6470
21 Ga0070675_100018105 3300005354 Bacteria 5607
22 Ga0070675_100051286 3300005354 Bacteria 3390
23 Ga0070671_100001284 3300005355 Bacteria 18853
24 Ga0070671_100012513 3300005355 Bacteria 6834
25 Ga0070671_100022499 3300005355 Bacteria 5147
26 Ga0070671_100065652 3300005355 Unclassified 3023
27 Ga0070674_100167184 3300005356 Unclassified 1674
28 Ga0070673_100003030 3300005364 Bacteria 10392
29 Ga0070673_100010708 3300005364 Bacteria 6219
30 Ga0070673_100011224 3300005364 Bacteria 6109
31 Ga0070673_100028359 3300005364 Bacteria 4163
32 Ga0070667_100001654 3300005367 Bacteria 19921
33 Ga0070667_100001891 3300005367 Bacteria 18579
34 Ga0070667_100007165 3300005367 Bacteria 9265
35 Ga0070667_100014256 3300005367 Bacteria 6565
36 Ga0070703_10010866 3300005406 Bacteria 2569
37 Ga0070709_10000014 3300005434 Bacteria 158503
38 Ga0070709_10000086 3300005434 Bacteria 69602
39 Ga0070710_10050778 3300005437 Bacteria 2326
40 Ga0070705_100000050 3300005440 Bacteria 61424
41 Ga0070685_10015298 3300005466 Unclassified 4074
42 Ga0070685_10055073 3300005466 Unclassified 2310
43 Ga0070706_100000578 3300005467 Bacteria 42573
44 Ga0070707_100004808 3300005468 Bacteria 12652
45 Ga0070707_100059237 3300005468 Bacteria 3673
46 Ga0070698_100000759 3300005471 Bacteria 34895
47 Ga0070698_100021707 3300005471 Bacteria 6722
48 Ga0070699_100125512 3300005518 Bacteria 2259
49 Ga0070684_100157865 3300005535 Unclassified 2057
50 Ga0070697_100000702 3300005536 Bacteria 25058
51 Ga0070697_100135467 3300005536 Bacteria 2068
52 Ga0070672_100003663 3300005543 Bacteria 9983
53 Ga0070672_100005502 3300005543 Bacteria 8399
54 Ga0070672_100086414 3300005543 Bacteria 2522
55 Ga0070696_100023662 3300005546 Bacteria 4175
56 Ga0070665_100048180 3300005548 Bacteria 4279
57 Ga0070665_100060606 3300005548 Bacteria 3793
58 Ga0070665_100252480 3300005548 Unclassified 1764
59 Ga0070664_100017439 3300005564 Bacteria 5896
60 Ga0070664_100117514 3300005564 Bacteria 2326
61 Ga0068856_100004263 3300005614 Bacteria 14280
62 Ga0070702_100103451 3300005615 Unclassified 1751
63 Ga0068859_100001410 3300005617 Bacteria 24397
64 Ga0068859_100005124 3300005617 Bacteria 13312
65 Ga0068859_100007697 3300005617 Bacteria 10941
66 Ga0068859_100017500 3300005617 Bacteria 7204
67 Ga0068859_100068704 3300005617 Bacteria 3578
68 Ga0068864_100023125 3300005618 Bacteria 5219
69 Ga0068864_100023613 3300005618 Bacteria 5165
70 Ga0068864_100049572 3300005618 Bacteria 3613
71 Ga0068861_100006373 3300005719 Bacteria 8036
72 Ga0068863_100009884 3300005841 Bacteria 9291
73 Ga0068863_100010131 3300005841 Bacteria 9166
74 Ga0068863_100051297 3300005841 Bacteria 3910
75 Ga0068863_100181906 3300005841 Bacteria 2018
76 Ga0068858_100005257 3300005842 Bacteria 12684
77 Ga0068858_100034873 3300005842 Unclassified 4667
78 Ga0068860_100002807 3300005843 Bacteria 18123
79 Ga0068860_100029166 3300005843 Bacteria 5308
80 Ga0068862_100000656 3300005844 Bacteria 35489
81 Ga0081455_10028854 3300005937 Bacteria 5064
82 Ga0070716_100015518 3300006173 Bacteria 3915
83 Ga0070712_100049326 3300006175 Bacteria 2923
84 Ga0097621_100073083 3300006237 Bacteria 2838
85 Ga0068871_100013728 3300006358 Bacteria 6022
86 Ga0068871_100016990 3300006358 Bacteria 5495
87 Ga0068871_100033144 3300006358 Bacteria 4087
88 Ga0068871_100089773 3300006358 Bacteria 2558
89 Ga0075428_100061906 3300006844 Bacteria 4098
90 Ga0075428_100087391 3300006844 Unclassified 3401
91 Ga0075431_100027229 3300006847 Bacteria 5864
92 Ga0075431_100104836 3300006847 Unclassified 2918
93 Ga0075433_10015496 3300006852 Bacteria 6256
94 Ga0075433_10046839 3300006852 Bacteria 3761
95 Ga0075433_10064265 3300006852 Bacteria 3216
96 Ga0075433_10149958 3300006852 Bacteria 2074
97 Ga0075434_100001787 3300006871 Bacteria 18566
98 Ga0075434_100024032 3300006871 Bacteria 5952
99 Ga0075434_100026523 3300006871 Bacteria 5678
100 Ga0075434_100047047 3300006871 Bacteria 4282
101 Ga0068865_100009009 3300006881 Bacteria 6173
102 Ga0075436_100000034 3300006914 Bacteria 86670
103 Ga0075436_100071685 3300006914 Bacteria 2396
104 Ga0097620_100001410 3300006931 Bacteria 24397
105 Ga0097620_100005124 3300006931 Bacteria 13312
106 Ga0097620_100007697 3300006931 Bacteria 10941
107 Ga0097620_100017499 3300006931 Bacteria 7204
108 Ga0097620_100068705 3300006931 Bacteria 3578
109 Ga0075435_100019252 3300007076 Bacteria 5208
110 Ga0075435_100043461 3300007076 Bacteria 3597
111 Ga0075435_100050556 3300007076 Bacteria 3346
112 Ga0075435_100118685 3300007076 Bacteria 2205
113 Ga0099794_10031705 3300007265 Unclassified 2476
114 Ga0111539_10000031 3300009094 Bacteria 165994
115 Ga0111539_10002561 3300009094 Bacteria 24068
116 Ga0105247_10021568 3300009101 Unclassified 3876
117 Ga0114129_10000595 3300009147 Bacteria 44634
118 Ga0114129_10015359 3300009147 Bacteria 10895
119 Ga0114129_10128729 3300009147 Bacteria 3479
120 Ga0114129_10162306 3300009147 Bacteria 3051
121 Ga0114129_10289771 3300009147 Bacteria 2185
122 Ga0105248_10000955 3300009177 Bacteria 32224
123 Ga0105248_10001121 3300009177 Bacteria 29820
124 Ga0105248_10001825 3300009177 Bacteria 23652
125 Ga0105248_10175048 3300009177 Bacteria 2419
126 Ga0105248_10267344 3300009177 Bacteria 1925
127 Ga0105239_10026276 3300010375 Bacteria 6408
128 Ga0157374_10019704 3300013296 Bacteria 5974
129 Ga0157374_10037838 3300013296 Bacteria 4431
130 Ga0157378_10006431 3300013297 Bacteria 10274
131 Ga0163162_10001824 3300013306 Bacteria 20033
132 Ga0163162_10002283 3300013306 Bacteria 18002
133 Ga0157375_10002383 3300013308 Bacteria 16265
134 Ga0157375_10003877 3300013308 Bacteria 12980
135 Ga0157375_10004859 3300013308 Bacteria 11677
136 Ga0157375_10005856 3300013308 Bacteria 10698
137 Ga0157375_10022929 3300013308 Bacteria 5752
138 Ga0157375_10033160 3300013308 Bacteria 4904
139 Ga0163163_10001555 3300014325 Bacteria 19358
140 Ga0163163_10015373 3300014325 Bacteria 7074
141 Ga0163163_10056085 3300014325 Bacteria 3894
142 Ga0157380_10107106 3300014326 Bacteria 2340
143 Ga0157377_10058969 3300014745 Bacteria 2186
144 Ga0157377_10072703 3300014745 Bacteria 1991
145 Ga0157379_10000924 3300014968 Bacteria 23734
146 Ga0157379_10003641 3300014968 Bacteria 13081
147 Ga0157376_10002506 3300014969 Bacteria 12440
148 Ga0157376_10030770 3300014969 Bacteria 4290
149 Ga0213873_10000717 3300021358 Bacteria 5379
150 Ga0213872_10013420 3300021361 Bacteria 3838
151 Ga0213871_10009728 3300021441 Unclassified 2161
152 Ga0224712_10033506 3300022467 Bacteria 1881
153 Ga0207692_10052436 3300025898 Bacteria 2073
154 Ga0207680_10082082 3300025903 Bacteria 2028
155 Ga0207699_10000013 3300025906 Bacteria 261480
156 Ga0207699_10000037 3300025906 Bacteria 126665
157 Ga0207705_10010927 3300025909 Bacteria 6592
158 Ga0207684_10000630 3300025910 Bacteria 42008
159 Ga0207646_10006996 3300025922 Bacteria 11554
160 Ga0207646_10044118 3300025922 Bacteria 4003
161 Ga0207659_10000063 3300025926 Bacteria 67205
162 Ga0207659_10000402 3300025926 Bacteria 26071
163 Ga0207659_10002184 3300025926 Bacteria 11624
164 Ga0207659_10005118 3300025926 Bacteria 7949
165 Ga0207659_10023852 3300025926 Bacteria 4090
166 Ga0207659_10046591 3300025926 Bacteria 3063
167 Ga0207644_10012665 3300025931 Bacteria 5605
168 Ga0207644_10014833 3300025931 Bacteria 5224
169 Ga0207704_10011537 3300025938 Bacteria 4353
170 Ga0207665_10024792 3300025939 Bacteria 3956
171 Ga0207691_10002525 3300025940 Bacteria 17897
172 Ga0207691_10010113 3300025940 Bacteria 9055
173 Ga0207691_10036147 3300025940 Bacteria 4577
174 Ga0207691_10082314 3300025940 Bacteria 2891
175 Ga0207711_10000812 3300025941 Bacteria 30626
176 Ga0207711_10001068 3300025941 Bacteria 26232
177 Ga0207711_10046396 3300025941 Bacteria 3712
178 Ga0207679_10004813 3300025945 Bacteria 8413
179 Ga0207679_10057040 3300025945 Unclassified 2887
180 Ga0207679_10067375 3300025945 Bacteria 2685
181 Ga0207651_10003861 3300025960 Bacteria 7439
182 Ga0207651_10019301 3300025960 Bacteria 4081
183 Ga0207658_10004863 3300025986 Bacteria 9281
184 Ga0207658_10008926 3300025986 Bacteria 6799
185 Ga0207658_10010337 3300025986 Bacteria 6342
186 Ga0207658_10038570 3300025986 Bacteria 3442
187 Ga0207677_10039868 3300026023 Bacteria 3091
188 Ga0207703_10004798 3300026035 Bacteria 11016
189 Ga0207703_10020057 3300026035 Bacteria 5224
190 Ga0207703_10025314 3300026035 Unclassified 4667
191 Ga0207703_10088380 3300026035 Bacteria 2601
192 Ga0207678_10066178 3300026067 Bacteria 3103
193 Ga0207702_10001901 3300026078 Bacteria 20406
194 Ga0207641_10000512 3300026088 Bacteria 43558
195 Ga0207641_10003141 3300026088 Bacteria 14832
196 Ga0207641_10051040 3300026088 Bacteria 3502
197 Ga0207676_10011408 3300026095 Bacteria 6351
198 Ga0207676_10044376 3300026095 Bacteria 3429
199 Ga0207683_10016318 3300026121 Bacteria 6321
200 Ga0207428_10000012 3300027907 Bacteria 354383
201 Ga0207428_10012823 3300027907 Bacteria 7349
202 Ga0207428_10058068 3300027907 Bacteria 3071
203 Ga0268266_10024685 3300028379 Bacteria 5114
204 Ga0268266_10094077 3300028379 Unclassified 2630
205 Ga0268265_10000198 3300028380 Bacteria 69954
206 Ga0268264_10003621 3300028381 Bacteria 13289
207 Ga0268264_10013542 3300028381 Bacteria 6716
208 Ga0268264_10134604 3300028381 Bacteria 2195
209 Ga0265331_10000848 3300031250 Bacteria 24870
210 Ga0265316_10000274 3300031344 Bacteria 58023
211 Ga0265314_10002078 3300031711 Bacteria 21124
212 Ga0265342_10005365 3300031712 Bacteria 9793
213 Ga0316574_0028222 3300035398 Bacteria 3384
214 Ga0316574_0036217 3300035398 Unclassified 3020
215 Ga0373937_0011868 3300036401 Bacteria 7649
216 Ga0373937_0055871 3300036401 Bacteria 3625
217 Ga0395900_0020973 3300037418 Bacteria 6677
218 Ga0400490_49783 3300038726 Bacteria 19581
219 Ga0400490_52628 3300038726 Bacteria 21084
220 Ga0400490_55601 3300038726 Bacteria 31889
221 Ga0400488_26434 3300038741 Bacteria 6046
222 Ga0400483_019265 3300039062 Bacteria 11744
223 Ga0400483_226286 3300039062 Bacteria 14546
224 Ga0400483_282974 3300039062 Bacteria 6665
225 Ga0400489_35708 3300039093 Bacteria 3525
226 Ga0400487_63125 3300039110 Bacteria 30492
227 Ga0436360_1207259 3300039438 Bacteria 6361
228 Ga0436361_1146307 3300039447 Bacteria 4681
229 Ga0436362_0320806 3300039453 Bacteria 5459
230 Ga0495592_0007708 3300046454 Bacteria 8059
231 Ga0495662_0032056 3300046476 Unclassified 2539
232 Ga0495657_0005291 3300046675 Bacteria 10215
233 Ga0495599_0032241 3300046678 Bacteria 3290
234 Ga0495613_0006306 3300046689 Bacteria 8870
235 Ga0495613_0089219 3300046689 Bacteria 2233
236 Ga0495674_0031452 3300047319 Bacteria 4821
237 Ga0496102_0003619 3300048905 Bacteria 13084
238 Ga0496104_0202135 3300048907 Bacteria 1899
239 Ga0496105_0179891 3300048908 Bacteria 1732
240 Ga0496107_0007776 3300048910 Bacteria 7406
241 Ga0501034_0031239 3300049571 Bacteria 5411
242 Ga0501075_0161793 3300049591 Bacteria 1708
243 nmdc:mga05p37_131930_c1 3300050507 Bacteria 3065
244 nmdc:mga05p37_33751_c1 3300050507 Bacteria 6268
245 nmdc:mga05p37_49942_c1 3300050507 Bacteria 5145
246 nmdc:mga05p37_5001_c1 3300050507 Bacteria 15538
247 nmdc:mga06r32_104095_c1 3300050510 Bacteria 2787
248 nmdc:mga06r32_87919_c1 3300050510 Bacteria 3033
249 nmdc:mga08y16_15003_c1 3300050511 Bacteria 8150
250 nmdc:mga08y16_7_c1 3300050511 Bacteria 610289
251 nmdc:mga08y16_9896_c1 3300050511 Bacteria 10008
252 nmdc:mga0n895_31872_c1 3300050512 Bacteria 5053
253 nmdc:mga0n895_39076_c1 3300050512 Bacteria 4601
254 nmdc:mga0rr50_14953_c1 3300050513 Bacteria 5110
255 nmdc:mga0rr50_35197_c1 3300050513 Unclassified 3594
256 nmdc:mga08x19_49875_c1 3300050514 Bacteria 2685
257 nmdc:mga08x19_85_c1 3300050514 Bacteria 83524
258 nmdc:mga0a205_166201_c1 3300050515 Bacteria 2102
259 nmdc:mga0a205_183510_c1 3300050515 Bacteria 1986
260 nmdc:mga0a205_27988_c1 3300050515 Bacteria 5385
261 nmdc:mga0a205_7266_c1 3300050515 Bacteria 10016
262 Ga0495619_0036491 3300053085 Bacteria 3202
263 nmdc:mga0rr50_115705_c1
264 Ga0065712_10073423
265 Ga0065712_10079877
266 Ga0070658_10013376
267 Ga0070690_100003001
268 Ga0070670_100013984
269 Ga0070670_100047180
270 Ga0070666_10002422
271 Ga0070666_10031197
272 Ga0070666_10035110
273 Ga0070680_100097652
274 Ga0068868_100001212
275 Ga0070689_100090134
276 Ga0070689_100170011
277 Ga0070661_100021256
278 Ga0070675_100000314
279 Ga0070675_100001938
280 Ga0070675_100004115
281 Ga0070675_100006328
282 Ga0070675_100013290
283 Ga0070675_100018105
284 Ga0070675_100051286
285 Ga0070671_100001284
286 Ga0070671_100012513
287 Ga0070671_100022499
288 Ga0070671_100065652
289 Ga0070674_100167184
290 Ga0070673_100003030
291 Ga0070673_100010708
292 Ga0070673_100011224
293 Ga0070673_100028359
294 Ga0070667_100001654
295 Ga0070667_100001891
296 Ga0070667_100007165
297 Ga0070667_100014256
298 Ga0070703_10010866
299 Ga0070709_10000014
300 Ga0070709_10000086
301 Ga0070710_10050778
302 Ga0070705_100000050
303 Ga0070685_10015298
304 Ga0070685_10055073
305 Ga0070706_100000578
306 Ga0070707_100004808
307 Ga0070707_100059237
308 Ga0070698_100000759
309 Ga0070698_100021707
310 Ga0070699_100125512
311 Ga0070684_100157865
312 Ga0070697_100000702
313 Ga0070697_100135467
314 Ga0070672_100003663
315 Ga0070672_100005502
316 Ga0070672_100086414
317 Ga0070696_100023662
318 Ga0070665_100048180
319 Ga0070665_100060606
320 Ga0070665_100252480
321 Ga0070664_100017439
322 Ga0070664_100117514
323 Ga0068856_100004263
324 Ga0070702_100103451
325 Ga0068859_100001410
326 Ga0068859_100005124
327 Ga0068859_100007697
328 Ga0068859_100017500
329 Ga0068859_100068704
330 Ga0068864_100023125
331 Ga0068864_100023613
332 Ga0068864_100049572
333 Ga0068861_100006373
334 Ga0068863_100009884
335 Ga0068863_100010131
336 Ga0068863_100051297
337 Ga0068863_100181906
338 Ga0068858_100005257
339 Ga0068858_100034873
340 Ga0068860_100002807
341 Ga0068860_100029166
342 Ga0068862_100000656
343 Ga0081455_10028854
344 Ga0070716_100015518
345 Ga0070712_100049326
346 Ga0097621_100073083
347 Ga0068871_100013728
348 Ga0068871_100016990
349 Ga0068871_100033144
350 Ga0068871_100089773
351 Ga0075428_100061906
352 Ga0075428_100087391
353 Ga0075431_100027229
354 Ga0075431_100104836
355 Ga0075433_10015496
356 Ga0075433_10046839
357 Ga0075433_10064265
358 Ga0075433_10149958
359 Ga0075434_100001787
360 Ga0075434_100024032
361 Ga0075434_100026523
362 Ga0075434_100047047
363 Ga0068865_100009009
364 Ga0075436_100000034
365 Ga0075436_100071685
366 Ga0097620_100001410
367 Ga0097620_100005124
368 Ga0097620_100007697
369 Ga0097620_100017499
370 Ga0097620_100068705
371 Ga0075435_100019252
372 Ga0075435_100043461
373 Ga0075435_100050556
374 Ga0075435_100118685
375 Ga0099794_10031705
376 Ga0111539_10000031
377 Ga0111539_10002561
378 Ga0105247_10021568
379 Ga0114129_10000595
380 Ga0114129_10015359
381 Ga0114129_10128729
382 Ga0114129_10162306
383 Ga0114129_10289771
384 Ga0105248_10000955
385 Ga0105248_10001121
386 Ga0105248_10001825
387 Ga0105248_10175048
388 Ga0105248_10267344
389 Ga0105239_10026276
390 Ga0157374_10019704
391 Ga0157374_10037838
392 Ga0157378_10006431
393 Ga0163162_10001824
394 Ga0163162_10002283
395 Ga0157375_10002383
396 Ga0157375_10003877
397 Ga0157375_10004859
398 Ga0157375_10005856
399 Ga0157375_10022929
400 Ga0157375_10033160
401 Ga0163163_10001555
402 Ga0163163_10015373
403 Ga0163163_10056085
404 Ga0157380_10107106
405 Ga0157377_10058969
406 Ga0157377_10072703
407 Ga0157379_10000924
408 Ga0157379_10003641
409 Ga0157376_10002506
410 Ga0157376_10030770
411 Ga0213873_10000717
412 Ga0213872_10013420
413 Ga0213871_10009728
414 Ga0224712_10033506
415 Ga0207692_10052436
416 Ga0207680_10082082
417 Ga0207699_10000013
418 Ga0207699_10000037
419 Ga0207705_10010927
420 Ga0207684_10000630
421 Ga0207646_10006996
422 Ga0207646_10044118
423 Ga0207659_10000063
424 Ga0207659_10000402
425 Ga0207659_10002184
426 Ga0207659_10005118
427 Ga0207659_10023852
428 Ga0207659_10046591
429 Ga0207644_10012665
430 Ga0207644_10014833
431 Ga0207704_10011537
432 Ga0207665_10024792
433 Ga0207691_10002525
434 Ga0207691_10010113
435 Ga0207691_10036147
436 Ga0207691_10082314
437 Ga0207711_10000812
438 Ga0207711_10001068
439 Ga0207711_10046396
440 Ga0207679_10004813
441 Ga0207679_10057040
442 Ga0207679_10067375
443 Ga0207651_10003861
444 Ga0207651_10019301
445 Ga0207658_10004863
446 Ga0207658_10008926
447 Ga0207658_10010337
448 Ga0207658_10038570
449 Ga0207677_10039868
450 Ga0207703_10004798
451 Ga0207703_10020057
452 Ga0207703_10025314
453 Ga0207703_10088380
454 Ga0207678_10066178
455 Ga0207702_10001901
456 Ga0207641_10000512
457 Ga0207641_10003141
458 Ga0207641_10051040
459 Ga0207676_10011408
460 Ga0207676_10044376
461 Ga0207683_10016318
462 Ga0207428_10000012
463 Ga0207428_10012823
464 Ga0207428_10058068
465 Ga0268266_10024685
466 Ga0268266_10094077
467 Ga0268265_10000198
468 Ga0268264_10003621
469 Ga0268264_10013542
470 Ga0268264_10134604
471 Ga0265331_10000848
472 Ga0265316_10000274
473 Ga0265314_10002078
474 Ga0265342_10005365
475 Ga0316574_0028222
476 Ga0316574_0036217
477 Ga0373937_0011868
478 Ga0373937_0055871
479 Ga0395900_0020973
480 Ga0400490_49783
481 Ga0400490_52628
482 Ga0400490_55601
483 Ga0400488_26434
484 Ga0400483_019265
485 Ga0400483_226286
486 Ga0400483_282974
487 Ga0400489_35708
488 Ga0400487_63125
489 Ga0436360_1207259
490 Ga0436361_1146307
491 Ga0436362_0320806
492 Ga0495592_0007708
493 Ga0495662_0032056
494 Ga0495657_0005291
495 Ga0495599_0032241
496 Ga0495613_0006306
497 Ga0495613_0089219
498 Ga0495674_0031452
499 Ga0496102_0003619
500 Ga0496104_0202135
501 Ga0496105_0179891
502 Ga0496107_0007776
503 Ga0501034_0031239
504 Ga0501075_0161793
505 nmdc:mga05p37_131930_c1
506 nmdc:mga05p37_33751_c1
507 nmdc:mga05p37_49942_c1
508 nmdc:mga05p37_5001_c1
509 nmdc:mga06r32_104095_c1
510 nmdc:mga06r32_87919_c1
511 nmdc:mga08y16_15003_c1
512 nmdc:mga08y16_7_c1
513 nmdc:mga08y16_9896_c1
514 nmdc:mga0n895_31872_c1
515 nmdc:mga0n895_39076_c1
516 nmdc:mga0rr50_14953_c1
517 nmdc:mga0rr50_35197_c1
518 nmdc:mga08x19_49875_c1
519 nmdc:mga08x19_85_c1
520 nmdc:mga0a205_166201_c1
521 nmdc:mga0a205_183510_c1
522 nmdc:mga0a205_27988_c1
523 nmdc:mga0a205_7266_c1
524 Ga0495619_0036491

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04055

Radical_SAM

Radical SAM superfamily

200

363

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
6b4c-assembly3.cif.gz_C structure of viperin from trichoderma virens 0.8259 184 360
6b4c-assembly10.cif.gz_J structure of viperin from trichoderma virens 0.8105 210 360
2qgq-assembly4.cif.gz_D crystal structure of tm_1862 from thermotoga maritima. northeast structural genomics consortium target vr77 0.8011 182 364
6b4c-assembly11.cif.gz_K structure of viperin from trichoderma virens 0.7958 184 360
6b4c-assembly6.cif.gz_F structure of viperin from trichoderma virens 0.7949 184 360
ID Description Score Start End Superfamily
af_Q58275_166_383_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.8859 187 376 3.80.30.20
af_Q58277_145_376_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.8653 184 371 3.80.30.20
af_Q58882_171_402_3.80.30.20 Alpha Beta;Alpha-Beta Horseshoe;pyruvate-formate lyase- activating enzyme;tm_1862 like domain 0.8591 186 373 3.80.30.20
af_A0A1D6JM25_181_293_3.30.750.200 Alpha Beta;2-Layer Sandwich;Transcription Regulator spoIIAA; 0.8582 289 375 3.30.750.200
af_Q4CUJ9_220_394_3.30.750.200 Alpha Beta;2-Layer Sandwich;Transcription Regulator spoIIAA; 0.8572 275 379 3.30.750.200
ID Description Score Start End GO Terms
AF-X1JM04-F1-model_v4 Radical SAM core domain-containing protein 0.9461 237 395 GO:0003824
GO:0005829
GO:0051536
AF-X0RJT7-F1-model_v4 Radical SAM core domain-containing protein 0.9305 293 431 GO:0005829
GO:0051536
AF-A0A3M1GB54-F1-model_v4 Radical SAM protein 0.9279 184 456 GO:0003824
GO:0005829
GO:0051539
AF-X1JM04-F1-model_v4 Radical SAM core domain-containing protein 0.9236 237 395 GO:0003824
GO:0005829
GO:0051536
AF-X1UKC1-F1-model_v4 Radical SAM core domain-containing protein 0.9127 182 425 GO:0003824
GO:0051539

Map