F369987

General Info

Members Datasets Scaffolds Average Seq Length
260 194 181 343

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8005484373|8005489753
Length 374
Sequence FDLNDEGAIWKDGNRITFKEEQPLTLRTAPSAVETSLPTLDLQRFYASPSERQAFVAELRTVLHDHGFFYLTGHGVDPKLIENVVATAKRFFALPLEEKLKIEMVKSPHFRGYNRAGQERTRGEQDWREQLDINTESAPFEIGPDTPAWRRLQGPNQWPEALPELKPLLLAYQAEVTRIGIGVLKAIAAALGQPENVFADIYQPQPSQLLKIIRYPGRDVAETDQGVGAHKDGGFVTVLLQDTTPGLRVRTEDGVWIDAPPVPGTFVINTGELLELATNGFVRADVHDVVAPPAGVERLSVAFFLGSRPDAAIPVIELPDELKRAERGISVDPLNPIFREVGQNQLKSRLRSHPDVARAHYADLLASEQSATTG

Samples

Sample ID Description Type Environment
1 2510461069 Rhizobium sp. PDO1-076 Isolate Rhizosphere
2 2529292951 Rhizobium sp. CCGE 510 Isolate Nodule
3 2537561587 Agrobacterium tumefaciens Cherry 2E-2-2 Isolate Rhizosphere
4 2582581306 Rhizobium sp. YR295 Isolate Rhizosphere
5 2582581316 Agrobacterium rhizogenes OK036 Isolate Rhizosphere
6 2582581865 Rhizobium sp. CF258 Isolate Rhizosphere
7 2582581866 Rhizobium sp. CF097 Isolate Rhizosphere
8 2599185352 Sinorhizobium sp. NFACC03 Isolate Rhizoplane
9 2615840698 Rhizobium multihospitium HAMBI 2975 Isolate Nodule
10 2617270742 Rhizobium miluonense HAMBI 2971 Isolate Nodule
11 2643221557 Ensifer sp. Root558 Isolate Unclassified
12 2643221610 Ensifer sp. Root74 Isolate Unclassified
13 2643221618 Ensifer sp. Root231 Isolate Unclassified
14 2643221626 Ensifer sp. Root31 Isolate Unclassified
15 2643221655 Ensifer sp. Root1252 Isolate Unclassified
16 2643221659 Ensifer sp. Root127 Isolate Unclassified
17 2643221668 Ensifer sp. Root423 Isolate Unclassified
18 2643221675 Ensifer sp. Root1298 Isolate Unclassified
19 2643221680 Ensifer sp. Root1312 Isolate Unclassified
20 2643221689 Rhizobium sp. Root483D2 Isolate Unclassified
21 2643221698 Ensifer sp. Root142 Isolate Unclassified
22 2643221712 Ensifer sp. Root258 Isolate Unclassified
23 2643221723 Ensifer sp. Root278 Isolate Unclassified
24 2643221726 Ensifer sp. Root954 Isolate Unclassified
25 2667528174 Rhizobium sp. NFR17 Isolate Rhizoplane
26 2718218233 Rhizobium phaseoli sv. phaseoli R744 Isolate Nodule
27 2738541333 Rhizobium sophoriradicis CCBAU 03470 Isolate Unclassified
28 2751185800 Brucella pituitosa AA2 Isolate Unclassified
29 2758568016 [Ochrobactrum] quorumnocens A44 Isolate Rhizosphere
30 2775507049 Rhizobium sp. ACO-34A Isolate Unclassified
31 2775507266 Rhizobium tropici PRF 81 Isolate Nodule
32 2791355266 Rhizobium sp. L43 Isolate Nodule
33 2818991448 Rhizobium miluonense 1234 Isolate Unclassified
34 2821123053 Rhizobium cellulosilyticum 1193 Isolate Unclassified
35 2838029111 Rhizobium tropici SEMIA 4079 Isolate Nodule
36 2838680041 Rhizobium leguminosarum SEMIA 415 Isolate Nodule
37 2838694306 Rhizobium leguminosarum SEMIA 421 Isolate Nodule
38 2838707686 Rhizobium leguminosarum SEMIA 430 Isolate Nodule
39 2838736955 Rhizobium cellulosilyticum SEMIA 448 Isolate Nodule
40 2840764183 Phyllobacterium sophorae CCBAU 03422 Isolate Unclassified
41 2841840854 Rhizobium cellulosilyticum SEMIA 444 Isolate Nodule
42 2841859092 Agrobacterium radiobacter SEMIA 4026 Isolate Nodule
43 2842077413 Rhizobium leguminosarum SEMIA 422 Isolate Nodule
44 2842118031 Rhizobium esperanzae SEMIA 420 Isolate Nodule
45 2842140634 Rhizobium cellulosilyticum SEMIA 452 Isolate Nodule
46 2842237096 Rhizobium leguminosarum SEMIA 482 Isolate Nodule
47 2842291075 Rhizobium leguminosarum SEMIA 491 Isolate Nodule
48 2842311132 Rhizobium phaseoli SEMIA 4002 Isolate Nodule
49 2842341865 Rhizobium leguminosarum SEMIA 4011 Isolate Nodule
50 2842370503 Rhizobium leguminosarum SEMIA 4022 Isolate Nodule
51 2842377471 Rhizobium leguminosarum SEMIA 4024 Isolate Nodule
52 2842384541 Rhizobium leguminosarum SEMIA 4025 Isolate Nodule
53 2842475841 Rhizobium tropici SEMIA 4059 Isolate Nodule
54 2842482326 Rhizobium lusitanum SEMIA 4060 Isolate Nodule
55 2842502639 Rhizobium tropici SEMIA 4063 Isolate Nodule
56 2842509118 Rhizobium paranaense SEMIA 4064 Isolate Nodule
57 2842515876 Agrobacterium radiobacter SEMIA 4072 Isolate Nodule
58 2844163670 Ensifer sp. 1H6 Isolate Unclassified
59 2850079185 Ensifer aridi JNVU TP6 Isolate Unclassified
60 2854896431 Neorhizobium alkalisoli DSM 21826 Isolate Unclassified
61 2854911287 Brucella lupini LUP21 Isolate Unclassified
62 2891373044 Shinella sp. AETb1-6 Isolate Rhizosphere
63 2909042592 Labrys sp. LIt4 Isolate Nodule
64 2915650412 Ochrobactrum sp. CM-21-5 Isolate Rhizosphere
65 2919408235 Rhizobium miluonense 3199 Isolate Unclassified
66 2919497567 Shewanella putrefaciens 3469 Isolate Unclassified
67 2920822456 Ensifer sesbaniae CCBAU 65729 Isolate Unclassified
68 2926754445 Agrobacterium radiobacter SLBN-94 Isolate Rhizosphere
69 2929138655 Agrobacterium sp. R-72433 Hybrid assembly Isolate Unclassified
70 2933011516 Rhizobium sp. SEMIA 4032 Isolate Unclassified
71 2935894831 Rhizobium leguminosarum SEMIA 419 Isolate Nodule
72 2936381700 Rhizobium chutanense C16 Isolate Unclassified
73 2960624210 Sinorhizobium meliloti USDA1415 Isolate Nodule
74 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
75 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
76 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
77 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
78 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
79 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
80 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
81 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
82 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
83 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
84 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
85 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
86 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
87 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
88 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
89 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
90 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
91 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
92 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
93 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
94 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
95 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
96 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
97 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
98 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
99 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
100 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
101 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
102 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
103 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
104 3300009765 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico pink nodule Metagenome Nodule
105 3300009766 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico white nodule Metagenome Nodule
106 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
107 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
108 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
109 3300013249 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.3_F06 Metagenome Rhizosphere
110 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
111 3300015684 Plant tissue microbial consortia from sugarcane, Campinas, Sao Paulo, Brazil - 002.2_F02 Metagenome Unclassified
112 3300015690 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_D05 Metagenome Rhizosphere
113 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
114 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
115 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
116 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
117 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
118 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
119 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
120 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
121 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
122 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
123 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
124 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
125 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
126 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
127 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
128 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
129 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
130 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
131 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
132 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
133 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
134 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
135 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
136 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
137 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
138 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
139 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
140 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
141 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
142 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
143 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
144 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
145 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
146 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
147 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
148 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
149 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
150 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
151 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
152 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
153 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
154 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
155 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
156 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
157 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
158 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
159 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
160 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
161 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
162 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
163 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
164 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
165 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
166 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
167 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
168 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
169 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
170 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
171 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
172 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
173 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
174 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
175 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
176 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
177 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
178 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
179 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
180 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
181 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
182 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
183 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
184 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
185 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
186 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
187 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
188 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
189 3300053735 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 endosphere Metagenome Endosphere
190 8005484373 Rhizobium tropici SARCC-755 Isolate Nodule
191 8005645114 Rhizobium tropici IGFRI Rhizo-19 Isolate Rhizosphere
192 8005682033 Rhizobium dioscoreae S-93 Isolate Unclassified
193 8024486573 Rhizobium tubonense CCBAU 85046 Isolate Nodule
194 8046767195 Rhizobium calliandrae CCGE524 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 69.62
Metatranscriptomes 0
Isolates 30.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 22.69
Nodule 13.46
Rhizoplane 3.85
Rhizosphere 26.92
Stem 0
Stem Tuber 0
Unclassified 33.08

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10000087 3300001979 Bacteria 31786
2 JGI25162J39368_1000165 3300002737 Bacteria 73081
3 JGI25162J39368_1001183 3300002737 Bacteria 15406
4 JGI25159J45721_1000037 3300002987 Bacteria 76090
5 JGI25165J46597_1000068 3300003214 Bacteria 196201
6 JGI25165J46597_1000263 3300003214 Bacteria 68906
7 rootH2_10012648 3300003320 Bacteria 16155
8 rootL2_10002196 3300003322 Bacteria 46229
9 rootH1_10091439 3300003323 Bacteria 19100
10 JGI25160J50197_1000113 3300003354 Bacteria 76090
11 JGI25161J50226_1000923 3300003374 Bacteria 10543
12 Ga0055526_1002024 3300003771 Bacteria 13953
13 Ga0055524_1000388 3300003775 Bacteria 37900
14 Ga0055524_1024274 3300003775 Bacteria 1928
15 Ga0055536_1007914 3300003781 Bacteria 4665
16 Ga0055528_1000044 3300003790 Bacteria 102325
17 Ga0055530_10008468 3300003791 Bacteria 4116
18 Ga0055540_1011298 3300003792 Plasmid 2890
19 Ga0055531_10018302 3300003794 Bacteria 2899
20 Ga0058692_1000436 3300003856 Bacteria 19081
21 Ga0055543_1000819 3300004625 Bacteria 15262
22 Ga0065165_1000347 3300005262 Bacteria 75788
23 Ga0065714_10066180 3300005288 Bacteria 7422
24 Ga0070668_100062785 3300005347 Bacteria 2879
25 Ga0070669_100143051 3300005353 Bacteria 1845
26 Ga0070713_100040122 3300005436 Bacteria 3805
27 Ga0070665_100003557 3300005548 Bacteria 16532
28 Ga0070665_100289368 3300005548 Bacteria 1641
29 Ga0070665_100360213 3300005548 Bacteria 1460
30 Ga0068855_100008231 3300005563 Bacteria 12605
31 Ga0068856_100003370 3300005614 Bacteria 16176
32 Ga0075369_10085785 3300006186 Bacteria 1401
33 Ga0097621_100018353 3300006237 Bacteria 5340
34 Ga0105240_10000962 3300009093 Bacteria 51334
35 Ga0105240_10010774 3300009093 Bacteria 12816
36 Ga0105240_10060965 3300009093 Bacteria 4702
37 Ga0105240_10086881 3300009093 Bacteria 3830
38 Ga0105238_10168554 3300009551 Bacteria 2166
39 Ga0123341_1000046 3300009765 Bacteria 52317
40 Ga0123342_1003399 3300009766 Bacteria 25568
41 Ga0105239_10015630 3300010375 Bacteria 8404
42 Ga0157373_10094939 3300013100 Bacteria 2099
43 Ga0157370_10498869 3300013104 Bacteria 1118
44 Ga0171463_1010 3300013249 Bacteria 269975
45 Ga0157379_10298006 3300014968 Bacteria 1469
46 Ga0183365_10134 3300015684 Bacteria 1922
47 Ga0183363_1102 3300015690 Bacteria 24221
48 Ga0209436_100598 3300025208 Bacteria 15429
49 Ga0209672_102202 3300025228 Bacteria 5089
50 Ga0209437_100067 3300025233 Bacteria 317685
51 Ga0209437_100104 3300025233 Bacteria 220736
52 Ga0209646_1013133 3300025246 Bacteria 1263
53 Ga0209129_1016355 3300025258 Bacteria 1492
54 Ga0209233_1000054 3300025261 Bacteria 439669
55 Ga0209233_1000088 3300025261 Bacteria 317980
56 Ga0209455_1014677 3300025272 Bacteria 1761
57 Ga0209673_1000013 3300025273 Bacteria 571633
58 Ga0209673_1019311 3300025273 Bacteria 2451
59 Ga0209130_1000074 3300025284 Bacteria 173309
60 Ga0209676_1002847 3300025292 Bacteria 11426
61 Ga0209025_1000086 3300025294 Bacteria 262586
62 Ga0209025_1000593 3300025294 Bacteria 65364
63 Ga0209564_1000167 3300025295 Bacteria 159653
64 Ga0209564_1000329 3300025295 Bacteria 92271
65 Ga0209758_1000195 3300025297 Bacteria 133982
66 Ga0209758_1013233 3300025297 Bacteria 4526
67 Ga0209050_1010867 3300025298 Bacteria 4415
68 Ga0209256_1000164 3300025299 Bacteria 135612
69 Ga0209256_1001227 3300025299 Bacteria 28538
70 Ga0207426_1000165 3300025302 Bacteria 170244
71 Ga0207426_1000736 3300025302 Bacteria 37388
72 Ga0209051_1000202 3300025303 Bacteria 106010
73 Ga0209051_1008835 3300025303 Bacteria 5274
74 Ga0207695_10012063 3300025913 Bacteria 10390
75 Ga0207695_10018582 3300025913 Bacteria 8031
76 Ga0207695_10030055 3300025913 Bacteria 5989
77 Ga0207695_10035658 3300025913 Bacteria 5390
78 Ga0207681_10064415 3300025923 Bacteria 2531
79 Ga0207700_10121967 3300025928 Bacteria 2115
80 Ga0207664_10142544 3300025929 Bacteria 2029
81 Ga0207667_10004102 3300025949 Bacteria 17901
82 Ga0209371_1000425 3300027312 Bacteria 43402
83 Ga0268266_10001770 3300028379 Bacteria 24518
84 Ga0268266_10156492 3300028379 Bacteria 2059
85 Ga0265334_10046328 3300028573 Unclassified 1681
86 Ga0307515_10022313 3300028794 Bacteria 11163
87 Ga0265338_10002186 3300028800 Bacteria 29972
88 Ga0268256_1001599 3300030500 Bacteria 13162
89 Ga0265340_10002806 3300031247 Bacteria 9915
90 Ga0265340_10038864 3300031247 Bacteria 2352
91 Ga0265339_10013765 3300031249 Bacteria 4896
92 Ga0307510_10155420 3300033180 Bacteria 1895
93 Ga0373956_0125579 3300035119 Unclassified 1200
94 Ga0373925_0053601 3300037068 Bacteria 3016
95 Ga0395899_0000044 3300037312 Bacteria 248735
96 Ga0395900_0000042 3300037418 Bacteria 242667
97 Ga0395898_0000080 3300037466 Bacteria 242667
98 Ga0395905_0000044 3300037471 Bacteria 242916
99 Ga0395901_0000027 3300038443 Bacteria 244204
100 Ga0466969_0068750 3300044656 Bacteria 1706
101 Ga0466969_0078096 3300044656 Bacteria 1583
102 Ga0466966_0238522 3300044684 Bacteria 1096
103 Ga0466963_0004183 3300044694 Bacteria 8357
104 Ga0466970_0000095 3300044765 Bacteria 37807
105 Ga0466959_0014902 3300045049 Bacteria 5663
106 Ga0466959_0069921 3300045049 Bacteria 2543
107 Ga0466959_0162196 3300045049 Bacteria 1571
108 Ga0495585_0027533 3300046492 Bacteria 3244
109 Ga0495606_0024430 3300046507 Bacteria 4354
110 Ga0495625_0068918 3300046660 Bacteria 2486
111 Ga0495681_0046042 3300047470 Bacteria 2083
112 Ga0496101_0142640 3300048904 Bacteria 1827
113 Ga0496104_0017086 3300048907 Bacteria 6603
114 Ga0496104_0019099 3300048907 Bacteria 6265
115 Ga0496105_0001843 3300048908 Bacteria 15198
116 Ga0496105_0021913 3300048908 Bacteria 5171
117 Ga0496106_0017075 3300048909 Bacteria 5372
118 Ga0496110_0020832 3300048913 Bacteria 5539
119 Ga0496114_0015356 3300048917 Bacteria 6158
120 Ga0496116_0017067 3300048919 Bacteria 5654
121 Ga0496116_0046124 3300048919 Bacteria 2944
122 Ga0496117_0018170 3300048920 Bacteria 5838
123 Ga0496118_0119629 3300048921 Bacteria 1721
124 Ga0496119_0004745 3300048922 Bacteria 13356
125 Ga0496119_0022288 3300048922 Bacteria 4541
126 Ga0496119_0033300 3300048922 Bacteria 3419
127 Ga0496119_0044875 3300048922 Bacteria 2777
128 Ga0496120_0058477 3300048923 Bacteria 2166
129 Ga0496121_0000003 3300048924 Bacteria 1191431
130 Ga0496121_0041603 3300048924 Bacteria 4013
131 Ga0496121_0150911 3300048924 Bacteria 1710
132 Ga0496122_0000032 3300048925 Bacteria 327099
133 Ga0496122_0000935 3300048925 Bacteria 53083
134 Ga0496122_0001137 3300048925 Bacteria 45632
135 Ga0496122_0001170 3300048925 Bacteria 44849
136 Ga0496122_0021858 3300048925 Bacteria 5707
137 Ga0496122_0023873 3300048925 Bacteria 5370
138 Ga0496122_0024659 3300048925 Bacteria 5257
139 Ga0496122_0115655 3300048925 Bacteria 1746
140 Ga0496123_0000035 3300048926 Bacteria 267288
141 Ga0496123_0000228 3300048926 Bacteria 113817
142 Ga0496123_0000337 3300048926 Bacteria 88727
143 Ga0496123_0003569 3300048926 Bacteria 17247
144 Ga0496123_0047545 3300048926 Bacteria 2897
145 Ga0496124_0001386 3300048927 Bacteria 36318
146 Ga0496124_0001676 3300048927 Bacteria 31485
147 Ga0496124_0009576 3300048927 Bacteria 9948
148 Ga0496124_0018676 3300048927 Bacteria 6486
149 Ga0496124_0023781 3300048927 Bacteria 5584
150 Ga0496124_0032366 3300048927 Bacteria 4617
151 Ga0496124_0037433 3300048927 Bacteria 4219
152 Ga0496124_0074282 3300048927 Bacteria 2811
153 Ga0496125_0000041 3300048928 Bacteria 310158
154 Ga0496125_0000170 3300048928 Bacteria 145369
155 Ga0496125_0033830 3300048928 Bacteria 4515
156 Ga0496125_0068086 3300048928 Bacteria 2802
157 Ga0496125_0119273 3300048928 Bacteria 1887
158 Ga0496125_0202680 3300048928 Bacteria 1297
159 Ga0496126_0005487 3300048929 Bacteria 14451
160 Ga0496126_0014639 3300048929 Bacteria 7918
161 Ga0496126_0036837 3300048929 Bacteria 4571
162 Ga0496126_0114509 3300048929 Bacteria 2346
163 Ga0496126_0288085 3300048929 Bacteria 1359
164 Ga0496126_0299218 3300048929 Bacteria 1328
165 Ga0496126_0310063 3300048929 Bacteria 1299
166 nmdc:mga00v17_258463_c1 3300050491 Bacteria 1130
167 nmdc:mga0sz30_28937_c1 3300050516 Bacteria 2281
168 Ga0500578_0008585 3300053086 Bacteria 6678
169 Ga0500560_006857 3300053107 Bacteria 2644
170 Ga0500569_050135 3300053109 Bacteria 1257
171 Ga0500618_000531 3300053125 Bacteria 23871
172 Ga0500618_001004 3300053125 Bacteria 14234
173 Ga0500658_0000070 3300053134 Bacteria 48197
174 Ga0500616_0006572 3300053153 Bacteria 7583
175 Ga0500624_000615 3300053157 Bacteria 9726
176 Ga0500634_0000722 3300053161 Bacteria 11373
177 Ga0500634_0041285 3300053161 Bacteria 2505
178 Ga0500636_0026222 3300053177 Bacteria 3445
179 Ga0500637_0070551 3300053178 Bacteria 2009
180 Ga0500637_0173535 3300053178 Bacteria 1238
181 Ga0500596_011515 3300053735 Bacteria 1353

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025929 Ga0207664_10142544 Ga0207664_101425442 261
2 3300028794 Ga0307515_10022313 Ga0307515_100223134 273
3 3300048929 Ga0496126_0014639 Ga0496126_0014639_5190_6197 289
4 3300005548 Ga0070665_100003557 Ga0070665_1000035573 298
5 3300028379 Ga0268266_10001770 Ga0268266_1000177012 298
6 iso_pu_bacteria 2919497567 2919499604 299
7 3300044684 Ga0466966_0238522 Ga0466966_0238522_74_1072 300
8 3300045049 Ga0466959_0069921 Ga0466959_0069921_607_1653 300
9 iso_pu_bacteria 2840764183 2840766248 301
10 3300005288 Ga0065714_10066180 Ga0065714_100661809 303
11 3300009093 Ga0105240_10010774 Ga0105240_100107742 303
12 3300009093 Ga0105240_10060965 Ga0105240_100609653 303
13 3300010375 Ga0105239_10015630 Ga0105239_100156304 303
14 3300014968 Ga0157379_10298006 Ga0157379_102980062 303
15 3300025913 Ga0207695_10030055 Ga0207695_100300552 303
16 3300044656 Ga0466969_0078096 Ga0466969_0078096_80_1084 303
17 3300045049 Ga0466959_0162196 Ga0466959_0162196_310_1314 303
18 3300053178 Ga0500637_0070551 Ga0500637_0070551_180_1187 303
19 iso_pu_bacteria 2582581306 2585268542 303
20 iso_pu_bacteria 2582581865 2585389205 303
21 iso_pu_bacteria 2582581866 2585397173 303
22 iso_pu_bacteria 2909042592 2909043454 305
23 3300037068 Ga0373925_0053601 Ga0373925_0053601_1026_2042 306
24 3300048907 Ga0496104_0019099 Ga0496104_0019099_545_1561 306
25 3300048908 Ga0496105_0001843 Ga0496105_0001843_9351_10367 306
26 iso_pu_bacteria 2838680041 2838684376 306
27 iso_pu_bacteria 2838694306 2838699867 306
28 iso_pu_bacteria 2838707686 2838711848 306
29 iso_pu_bacteria 2842077413 2842081843 306
30 iso_pu_bacteria 2842118031 2842122419 306
31 iso_pu_bacteria 2842237096 2842241260 306
32 iso_pu_bacteria 2842291075 2842295498 306
33 iso_pu_bacteria 2842370503 2842376710 306
34 iso_pu_bacteria 2842377471 2842381726 306
35 iso_pu_bacteria 2842384541 2842388967 306
36 iso_pu_bacteria 2920822456 2920826757 306
37 iso_pu_bacteria 2935894831 2935898283 306
38 3300009093 Ga0105240_10086881 Ga0105240_100868812 307
39 3300013104 Ga0157370_10498869 Ga0157370_104988691 307
40 3300025913 Ga0207695_10018582 Ga0207695_100185822 307
41 3300025913 Ga0207695_10035658 Ga0207695_100356583 307
42 3300035119 Ga0373956_0125579 Ga0373956_0125579_61_1107 307
43 3300046660 Ga0495625_0068918 Ga0495625_0068918_1049_2065 307
44 3300048927 Ga0496124_0001676 Ga0496124_0001676_13584_14600 307
45 3300053109 Ga0500569_050135 Ga0500569_050135_86_1102 307
46 iso_pu_bacteria 2599185352 2600197185 307
47 iso_pu_bacteria 2643221557 2643808985 307
48 iso_pu_bacteria 2643221610 2644069170 307
49 iso_pu_bacteria 2643221618 2644104817 307
50 iso_pu_bacteria 2643221626 2644151248 307
51 iso_pu_bacteria 2643221655 2644313236 307
52 iso_pu_bacteria 2643221659 2644336322 307
53 iso_pu_bacteria 2643221668 2644378578 307
54 iso_pu_bacteria 2643221675 2644420241 307
55 iso_pu_bacteria 2643221680 2644453648 307
56 iso_pu_bacteria 2643221698 2644547158 307
57 iso_pu_bacteria 2643221712 2644612859 307
58 iso_pu_bacteria 2643221723 2644674305 307
59 iso_pu_bacteria 2643221726 2644692347 307
60 iso_pu_bacteria 2718218233 2720617902 307
61 iso_pu_bacteria 2791355266 2793357830 307
62 iso_pu_bacteria 2840764183 2840768521 307
63 iso_pu_bacteria 2842311132 2842316531 307
64 iso_pu_bacteria 2842341865 2842342238 307
65 iso_pu_bacteria 8024486573 8024492896 307
66 3300031247 Ga0265340_10038864 Ga0265340_100388642 308
67 3300031249 Ga0265339_10013765 Ga0265339_100137654 308
68 3300053153 Ga0500616_0006572 Ga0500616_0006572_3990_5021 308
69 iso_pu_bacteria 2617270742 2617381346 308
70 iso_pu_bacteria 2738541333 2739036155 308
71 iso_pu_bacteria 2842482326 2842485427 308
72 iso_pu_bacteria 8046767195 8046772703 308
73 3300006186 Ga0075369_10085785 Ga0075369_100857851 309
74 3300048924 Ga0496121_0150911 Ga0496121_0150911_425_1459 309
75 3300048925 Ga0496122_0000935 Ga0496122_0000935_31623_32654 309
76 3300048926 Ga0496123_0000337 Ga0496123_0000337_31685_32716 309
77 3300050516 nmdc:mga0sz30_28937_c1 nmdc:mga0sz30_28937_c1_1219_2262 309
78 iso_pu_bacteria 2510461069 2510840243 309
79 iso_pu_bacteria 2529292951 2530649536 309
80 iso_pu_bacteria 2643221689 2644498060 309
81 iso_pu_bacteria 2751185800 2753358144 309
82 iso_pu_bacteria 2758568016 2758639078 309
83 iso_pu_bacteria 2775507049 2776916030 309
84 iso_pu_bacteria 2844163670 2844169630 309
85 iso_pu_bacteria 2850079185 2850083634 309
86 iso_pu_bacteria 2854911287 2854916395 309
87 iso_pu_bacteria 2891373044 2891376058 309
88 iso_pu_bacteria 2915650412 2915652715 309
89 iso_pu_bacteria 2929138655 2929141262 309
90 iso_pu_bacteria 2960624210 2960630356 309
91 3300005347 Ga0070668_100062785 Ga0070668_1000627852 310
92 3300009765 Ga0123341_1000046 Ga0123341_100004626 310
93 3300009766 Ga0123342_1003399 Ga0123342_100339915 310
94 3300013249 Ga0171463_1010 Ga0171463_101032 310
95 3300015684 Ga0183365_10134 Ga0183365_101341 310
96 3300015690 Ga0183363_1102 Ga0183363_110219 310
97 3300025258 Ga0209129_1016355 Ga0209129_10163552 310
98 3300025297 Ga0209758_1000195 Ga0209758_1000195117 310
99 3300025302 Ga0207426_1000736 Ga0207426_100073632 310
100 3300028800 Ga0265338_10002186 Ga0265338_100021869 310
101 3300031247 Ga0265340_10002806 Ga0265340_100028065 310
102 3300046507 Ga0495606_0024430 Ga0495606_0024430_1446_2483 310
103 3300048904 Ga0496101_0142640 Ga0496101_0142640_87_1124 310
104 3300048907 Ga0496104_0017086 Ga0496104_0017086_1567_2604 310
105 3300048908 Ga0496105_0021913 Ga0496105_0021913_3963_5000 310
106 3300048913 Ga0496110_0020832 Ga0496110_0020832_4022_5059 310
107 3300048917 Ga0496114_0015356 Ga0496114_0015356_146_1183 310
108 3300048919 Ga0496116_0017067 Ga0496116_0017067_2794_3831 310
109 3300048922 Ga0496119_0033300 Ga0496119_0033300_984_2021 310
110 3300048925 Ga0496122_0021858 Ga0496122_0021858_3270_4307 310
111 3300048927 Ga0496124_0023781 Ga0496124_0023781_4039_5076 310
112 3300048928 Ga0496125_0033830 Ga0496125_0033830_1600_2637 310
113 3300048929 Ga0496126_0114509 Ga0496126_0114509_1235_2272 310
114 3300053086 Ga0500578_0008585 Ga0500578_0008585_253_1278 310
115 3300053134 Ga0500658_0000070 Ga0500658_0000070_18918_19943 310
116 iso_pu_bacteria 2582581316 2585334984 310
117 iso_pu_bacteria 2936381700 2936384194 310
118 3300002987 JGI25159J45721_1000037 JGI25159J45721_100003735 311
119 3300003354 JGI25160J50197_1000113 JGI25160J50197_100011335 311
120 3300003374 JGI25161J50226_1000923 JGI25161J50226_10009238 311
121 3300003771 Ga0055526_1002024 Ga0055526_10020246 311
122 3300003775 Ga0055524_1000388 Ga0055524_100038822 311
123 3300003781 Ga0055536_1007914 Ga0055536_10079143 311
124 3300003791 Ga0055530_10008468 Ga0055530_100084683 311
125 3300003794 Ga0055531_10018302 Ga0055531_100183023 311
126 3300004625 Ga0055543_1000819 Ga0055543_100081912 311
127 3300005262 Ga0065165_1000347 Ga0065165_100034735 311
128 3300025208 Ga0209436_100598 Ga0209436_10059811 311
129 3300025284 Ga0209130_1000074 Ga0209130_100007430 311
130 3300025292 Ga0209676_1002847 Ga0209676_10028473 311
131 3300025294 Ga0209025_1000593 Ga0209025_100059324 311
132 3300025295 Ga0209564_1000329 Ga0209564_100032932 311
133 3300025297 Ga0209758_1013233 Ga0209758_10132332 311
134 3300025298 Ga0209050_1010867 Ga0209050_10108674 311
135 3300025299 Ga0209256_1000164 Ga0209256_100016490 311
136 3300025302 Ga0207426_1000165 Ga0207426_100016530 311
137 3300025303 Ga0209051_1008835 Ga0209051_10088353 311
138 3300044656 Ga0466969_0068750 Ga0466969_0068750_41_1075 311
139 3300045049 Ga0466959_0014902 Ga0466959_0014902_1756_2790 311
140 3300046492 Ga0495585_0027533 Ga0495585_0027533_1347_2387 311
141 3300048927 Ga0496124_0018676 Ga0496124_0018676_3835_4896 311
142 3300053161 Ga0500634_0000722 Ga0500634_0000722_10028_11065 311
143 iso_pu_bacteria 2775507266 2778174510 311
144 3300002737 JGI25162J39368_1001183 JGI25162J39368_10011834 312
145 3300003214 JGI25165J46597_1000263 JGI25165J46597_100026340 312
146 3300005436 Ga0070713_100040122 Ga0070713_1000401223 312
147 3300005548 Ga0070665_100360213 Ga0070665_1003602132 312
148 3300005563 Ga0068855_100008231 Ga0068855_10000823111 312
149 3300006237 Ga0097621_100018353 Ga0097621_1000183535 312
150 3300009093 Ga0105240_10000962 Ga0105240_1000096211 312
151 3300009551 Ga0105238_10168554 Ga0105238_101685543 312
152 3300025233 Ga0209437_100104 Ga0209437_10010448 312
153 3300025261 Ga0209233_1000054 Ga0209233_100005488 312
154 3300025913 Ga0207695_10012063 Ga0207695_100120633 312
155 3300025928 Ga0207700_10121967 Ga0207700_101219671 312
156 3300025949 Ga0207667_10004102 Ga0207667_1000410213 312
157 3300028573 Ga0265334_10046328 Ga0265334_100463282 312
158 3300033180 Ga0307510_10155420 Ga0307510_101554202 312
159 3300053178 Ga0500637_0173535 Ga0500637_0173535_147_1196 312
160 iso_pu_bacteria 2537561587 2537877030 312
161 iso_pu_bacteria 2841859092 2841862729 312
162 iso_pu_bacteria 2842515876 2842519753 312
163 iso_pu_bacteria 2926754445 2926755248 312
164 iso_pu_bacteria 2933011516 2933012129 312
165 3300025294 Ga0209025_1000086 Ga0209025_1000086163 313
166 3300037312 Ga0395899_0000044 Ga0395899_0000044_220349_221446 313
167 3300037418 Ga0395900_0000042 Ga0395900_0000042_214509_215606 313
168 3300037466 Ga0395898_0000080 Ga0395898_0000080_214509_215606 313
169 3300037471 Ga0395905_0000044 Ga0395905_0000044_27311_28408 313
170 3300038443 Ga0395901_0000027 Ga0395901_0000027_27277_28374 313
171 3300048919 Ga0496116_0046124 Ga0496116_0046124_1352_2392 313
172 3300048920 Ga0496117_0018170 Ga0496117_0018170_731_1789 313
173 3300048922 Ga0496119_0022288 Ga0496119_0022288_80_1138 313
174 3300048922 Ga0496119_0044875 Ga0496119_0044875_1494_2552 313
175 3300048924 Ga0496121_0000003 Ga0496121_0000003_875853_876911 313
176 3300048925 Ga0496122_0000032 Ga0496122_0000032_30214_31254 313
177 3300048925 Ga0496122_0024659 Ga0496122_0024659_2000_3040 313
178 3300048925 Ga0496122_0115655 Ga0496122_0115655_282_1340 313
179 3300048926 Ga0496123_0000228 Ga0496123_0000228_77429_78469 313
180 3300048927 Ga0496124_0001386 Ga0496124_0001386_19591_20631 313
181 3300048927 Ga0496124_0009576 Ga0496124_0009576_4181_5239 313
182 3300048927 Ga0496124_0037433 Ga0496124_0037433_2470_3528 313
183 3300048928 Ga0496125_0000041 Ga0496125_0000041_77378_78418 313
184 3300048928 Ga0496125_0000170 Ga0496125_0000170_72028_73086 313
185 3300048928 Ga0496125_0068086 Ga0496125_0068086_794_1834 313
186 3300048928 Ga0496125_0119273 Ga0496125_0119273_720_1778 313
187 3300048928 Ga0496125_0202680 Ga0496125_0202680_122_1162 313
188 3300048929 Ga0496126_0005487 Ga0496126_0005487_10916_11956 313
189 3300048929 Ga0496126_0036837 Ga0496126_0036837_2291_3331 313
190 3300048929 Ga0496126_0288085 Ga0496126_0288085_122_1180 313
191 3300048929 Ga0496126_0299218 Ga0496126_0299218_99_1139 313
192 3300050491 nmdc:mga00v17_258463_c1 nmdc:mga00v17_258463_c1_62_1120 313
193 iso_pu_bacteria 2615840698 2616552871 313
194 iso_pu_bacteria 2667528174 2671114221 313
195 iso_pu_bacteria 2818991448 2819607804 313
196 iso_pu_bacteria 2821123053 2821129035 313
197 iso_pu_bacteria 2838029111 2838030684 313
198 iso_pu_bacteria 2838736955 2838741358 313
199 iso_pu_bacteria 2841840854 2841845216 313
200 iso_pu_bacteria 2842140634 2842144919 313
201 iso_pu_bacteria 2842475841 2842477035 313
202 iso_pu_bacteria 2842502639 2842503832 313
203 iso_pu_bacteria 2842509118 2842513414 313
204 iso_pu_bacteria 2854896431 2854899689 313
205 iso_pu_bacteria 2919408235 2919412454 313
206 iso_pu_bacteria 8005645114 8005650624 313
207 iso_pu_bacteria 8005682033 8005683701 313
208 3300003320 rootH2_10012648 rootH2_100126488 314
209 3300003322 rootL2_10002196 rootL2_1000219632 314
210 3300003323 rootH1_10091439 rootH1_100914397 314
211 3300053177 Ga0500636_0026222 Ga0500636_0026222_1889_2926 314
212 3300005353 Ga0070669_100143051 Ga0070669_1001430511 315
213 3300005548 Ga0070665_100289368 Ga0070665_1002893681 315
214 3300025228 Ga0209672_102202 Ga0209672_1022025 315
215 3300025246 Ga0209646_1013133 Ga0209646_10131331 315
216 3300025273 Ga0209673_1019311 Ga0209673_10193113 315
217 3300025923 Ga0207681_10064415 Ga0207681_100644154 315
218 3300028379 Ga0268266_10156492 Ga0268266_101564922 315
219 3300048909 Ga0496106_0017075 Ga0496106_0017075_1332_2372 315
220 3300048924 Ga0496121_0041603 Ga0496121_0041603_1998_3038 315
221 3300048925 Ga0496122_0001137 Ga0496122_0001137_24618_25658 315
222 3300048926 Ga0496123_0003569 Ga0496123_0003569_8462_9502 315
223 3300048927 Ga0496124_0032366 Ga0496124_0032366_1399_2439 315
224 3300048929 Ga0496126_0310063 Ga0496126_0310063_234_1274 315
225 3300003792 Ga0055540_1011298 Ga0055540_10112982 316
226 3300003856 Ga0058692_1000436 Ga0058692_100043611 316
227 3300025303 Ga0209051_1000202 Ga0209051_1000202114 316
228 3300027312 Ga0209371_1000425 Ga0209371_100042512 316
229 3300030500 Ga0268256_1001599 Ga0268256_100159912 316
230 3300047470 Ga0495681_0046042 Ga0495681_0046042_879_1925 316
231 3300053107 Ga0500560_006857 Ga0500560_006857_1468_2514 316
232 3300053157 Ga0500624_000615 Ga0500624_000615_582_1628 316
233 3300053161 Ga0500634_0041285 Ga0500634_0041285_770_1816 316
234 3300001979 JGI24740J21852_10000087 JGI24740J21852_1000008714 317
235 3300002737 JGI25162J39368_1000165 JGI25162J39368_100016543 317
236 3300003214 JGI25165J46597_1000068 JGI25165J46597_1000068118 317
237 3300003775 Ga0055524_1024274 Ga0055524_10242742 317
238 3300003790 Ga0055528_1000044 Ga0055528_1000044102 317
239 3300005614 Ga0068856_100003370 Ga0068856_10000337014 317
240 3300013100 Ga0157373_10094939 Ga0157373_100949392 317
241 3300025233 Ga0209437_100067 Ga0209437_100067190 317
242 3300025261 Ga0209233_1000088 Ga0209233_1000088190 317
243 3300025272 Ga0209455_1014677 Ga0209455_10146773 317
244 3300025273 Ga0209673_1000013 Ga0209673_10000139 317
245 3300025295 Ga0209564_1000167 Ga0209564_100016767 317
246 3300025299 Ga0209256_1001227 Ga0209256_10012278 317
247 3300044694 Ga0466963_0004183 Ga0466963_0004183_4626_5690 317
248 3300044765 Ga0466970_0000095 Ga0466970_0000095_35071_36135 317
249 3300048921 Ga0496118_0119629 Ga0496118_0119629_437_1483 317
250 3300048922 Ga0496119_0004745 Ga0496119_0004745_4620_5684 317
251 3300048923 Ga0496120_0058477 Ga0496120_0058477_1019_2083 317
252 3300048925 Ga0496122_0001170 Ga0496122_0001170_38008_39075 317
253 3300048925 Ga0496122_0023873 Ga0496122_0023873_678_1742 317
254 3300048926 Ga0496123_0000035 Ga0496123_0000035_38008_39075 317
255 3300048926 Ga0496123_0047545 Ga0496123_0047545_978_2042 317
256 3300048927 Ga0496124_0074282 Ga0496124_0074282_1197_2261 317
257 3300053125 Ga0500618_000531 Ga0500618_000531_9097_10161 317
258 3300053125 Ga0500618_001004 Ga0500618_001004_9994_11040 317
259 3300053735 Ga0500596_011515 Ga0500596_011515_199_1263 317
260 iso_pu_bacteria 8005484373 8005489753 317

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF14226

DIOX_N

non-haem dioxygenase in morphine synthesis N-terminal

37

161

0.97

PF03171

2OG-FeII_Oxy

2OG-Fe(II) oxygenase superfamily

206

307

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
6xjj-assembly1.cif.gz_A structure of non-heme iron enzyme tropc: radical tropolone biosynthesis 0.8521 14 262
6lsv-assembly2.cif.gz_B crystal structure of jox2 in complex with 2og, fe, and ja 0.8485 13 263
5c3s-assembly4.cif.gz_D crystal structure of the full-length neurospora crassa t7h in complex with alpha-kg and 5-formyluracil (5fu) 0.8474 9 267
5c3p-assembly4.cif.gz_D crystal structure of the full-length neurospora crassa t7h in complex with alpha-kg 0.8374 9 273
5c3p-assembly3.cif.gz_C crystal structure of the full-length neurospora crassa t7h in complex with alpha-kg 0.8362 9 267
ID Description Score Start End Superfamily
af_A0A0R0F2E2_197_331_2.60.120.330 Mainly Beta;Sandwich;Jelly Rolls;B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.8946 154 267 2.60.120.330
af_Q54M55_1_270_2.60.120.330 Mainly Beta;Sandwich;Jelly Rolls;B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.8912 63 263 2.60.120.330
af_A0A0R0E568_2_215_2.60.120.330 Mainly Beta;Sandwich;Jelly Rolls;B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.8824 108 263 2.60.120.330
af_A0A0R0ICN9_1_179_2.60.120.330 Mainly Beta;Sandwich;Jelly Rolls;B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.8757 112 276 2.60.120.330
af_A0A1D8PSR6_1_325_2.60.120.330 Mainly Beta;Sandwich;Jelly Rolls;B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.8747 9 272 2.60.120.330
ID Description Score Start End GO Terms
AF-A0A6I3H8U3-F1-model_v4 Fe2OG dioxygenase domain-containing protein 0.9448 170 261 GO:0009693
GO:0017000
AF-A0A1J3FRS4-F1-model_v4 Gibberellin 2-beta-dioxygenase 1 0.9438 171 263 GO:0051213
AF-A0A7N2LQ70-F1-model_v4 Fe2OG dioxygenase domain-containing protein 0.9383 110 259
AF-A0A7J9I3I7-F1-model_v4 Fe2OG dioxygenase domain-containing protein 0.9354 116 254
AF-A0A5M8PV98-F1-model_v4 Fe2OG dioxygenase domain-containing protein 0.9326 141 272 GO:0016491
GO:0046872

Feature Viewer

pLDDT pTM Quality
80.56 0.82 High
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Predicted Structure (AlphaFold2)

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