F369379

General Info

Members Datasets Scaffolds Average Seq Length
260 172 520 227

Family's Representative Sequence

Representative Sequence 3300005445|Ga0070708_100471372|Ga0070708_1004713722
Length 259
Sequence MTIMSTVHVAARHILNSAIASRSREGLTMPDVTSTVFVVDDDVSVRESLELLIKGAGWQPETFVSAQEFLSRPHPAVPCCLVLDVTLPGLSGLELQKQLAERTDMPIIFITGHGDVPVSVQAMKAGAAEFLTKPFKDDVLLNAIRGAIERSRAALRLEAEMRALRSCYESLTRREREVMALVVFGRLNKQIGGELGISEVTVKAHRGQVMRKMKADSLADLVTIATRLHLAPPRKSWKLDFIALIDAAAVFVPPSMSLS

Samples

Sample ID Description Type Environment
1 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
2 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
3 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
4 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
5 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
10 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
11 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
12 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
13 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
14 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
15 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
16 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
17 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
18 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
25 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
29 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
30 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
31 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
33 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
34 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
35 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
36 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
37 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
38 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
39 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
40 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
42 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
43 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
44 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
45 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
46 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
47 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
49 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
50 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
51 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
52 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
53 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
54 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
55 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
56 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
57 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
58 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
59 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
94 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
95 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
96 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
97 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
98 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
99 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
100 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
101 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
102 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
103 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
104 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
105 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
106 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
107 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
108 3300035410 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 Metagenome Rhizosphere
109 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
110 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
111 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
112 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
113 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
114 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
115 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
116 3300041408 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 Metagenome Rhizosphere
117 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
118 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
119 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
120 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
121 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
122 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
123 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
124 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
125 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
126 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
127 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
128 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
129 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
130 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
131 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
132 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
133 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
134 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
135 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
136 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
137 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
138 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
139 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
140 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
141 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
142 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
143 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
144 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
145 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
146 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
147 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
148 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
149 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
150 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
151 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
152 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
153 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
154 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
155 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
156 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
157 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
158 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
159 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
160 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
161 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
162 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
163 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
164 3300059505 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 24R_SD_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
165 3300059511 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 56R_CD_T2_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
166 3300059512 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 57R_AW_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
167 3300059647 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 43R_SW_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
168 2585428057 Methylibium sp. YR605 Isolate Rhizosphere
169 2643221584 Caulobacter sp. Root656 Isolate Unclassified
170 2857504554 Caulobacter sp. R-72291 Isolate Unclassified
171 2884960567 Caulobacter sp. 602-1 Isolate Rhizosphere
172 8024486573 Rhizobium tubonense CCBAU 85046 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 95.77
Metatranscriptomes 2.31
Isolates 1.92

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.54
Nodule 0.38
Rhizoplane 3.08
Rhizosphere 93.46
Stem 0
Stem Tuber 0
Unclassified 1.54

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070708_100471372 3300005445 Bacteria 1184
2 Ga0065165_1000312 3300005262 Bacteria 79663
3 Ga0065712_10010197 3300005290 Bacteria 3054
4 Ga0065715_10001270 3300005293 Bacteria 10460
5 Ga0065715_10261610 3300005293 Bacteria 1136
6 Ga0065715_10376771 3300005293 Bacteria 913
7 Ga0070676_10189800 3300005328 Bacteria 1341
8 Ga0070670_100054455 3300005331 Bacteria 3435
9 Ga0070692_10418175 3300005345 Bacteria 850
10 Ga0070668_100224994 3300005347 Bacteria 1549
11 Ga0070669_100291214 3300005353 Bacteria 1311
12 Ga0070675_100030040 3300005354 Bacteria 4385
13 Ga0070671_100065158 3300005355 Bacteria 3034
14 Ga0070667_100049410 3300005367 Bacteria 3542
15 Ga0070667_100270982 3300005367 Bacteria 1522
16 Ga0070667_100387680 3300005367 Bacteria 1270
17 Ga0070711_100226847 3300005439 Bacteria 1455
18 Ga0070705_100070398 3300005440 Bacteria 2113
19 Ga0070694_100221393 3300005444 Bacteria 1420
20 Ga0070708_100221438 3300005445 Bacteria 1775
21 Ga0070708_100421116 3300005445 Bacteria 1259
22 Ga0070678_100531239 3300005456 Bacteria 1042
23 Ga0070699_100005928 3300005518 Bacteria 10671
24 Ga0070699_100012102 3300005518 Bacteria 7447
25 Ga0070697_100248880 3300005536 Bacteria 1519
26 Ga0068853_100303936 3300005539 Bacteria 1475
27 Ga0070696_100202748 3300005546 Bacteria 1482
28 Ga0070665_100001870 3300005548 Bacteria 23891
29 Ga0070665_100119732 3300005548 Bacteria 2634
30 Ga0070665_100247634 3300005548 Bacteria 1782
31 Ga0070704_100031406 3300005549 Bacteria 3572
32 Ga0070704_100827524 3300005549 Bacteria 829
33 Ga0068855_100035499 3300005563 Bacteria 5938
34 Ga0070664_100038966 3300005564 Bacteria 4002
35 Ga0068854_100465528 3300005578 Bacteria 1059
36 Ga0068856_100083230 3300005614 Bacteria 3177
37 Ga0068856_100207881 3300005614 Bacteria 1972
38 Ga0068859_100000151 3300005617 Bacteria 66183
39 Ga0068863_100023650 3300005841 Bacteria 5865
40 Ga0068860_100581163 3300005843 Bacteria 1124
41 Ga0068860_100878545 3300005843 Bacteria 912
42 Ga0068860_100945724 3300005843 Bacteria 879
43 Ga0068862_100264273 3300005844 Bacteria 1572
44 Ga0068862_100520162 3300005844 Bacteria 1132
45 Ga0097621_100411780 3300006237 Bacteria 1212
46 Ga0068871_100109488 3300006358 Bacteria 2322
47 Ga0075428_100008737 3300006844 Bacteria 11236
48 Ga0075428_100033553 3300006844 Bacteria 5666
49 Ga0075428_100758767 3300006844 Bacteria 1032
50 Ga0075430_100001337 3300006846 Bacteria 19912
51 Ga0075430_100030270 3300006846 Bacteria 4596
52 Ga0075430_100032147 3300006846 Bacteria 4454
53 Ga0075430_100043513 3300006846 Bacteria 3795
54 Ga0075431_100005990 3300006847 Bacteria 12046
55 Ga0075431_100014527 3300006847 Bacteria 7966
56 Ga0075431_100034770 3300006847 Bacteria 5191
57 Ga0075431_100069391 3300006847 Bacteria 3636
58 Ga0075431_100492227 3300006847 Bacteria 1218
59 Ga0075431_100984739 3300006847 Bacteria 810
60 Ga0075433_10002499 3300006852 Bacteria 13989
61 Ga0075433_10089487 3300006852 Bacteria 2721
62 Ga0075433_10708302 3300006852 Bacteria 882
63 Ga0075434_100001045 3300006871 Bacteria 22585
64 Ga0075434_100128514 3300006871 Bacteria 2551
65 Ga0075434_100419534 3300006871 Bacteria 1359
66 Ga0075429_100057385 3300006880 Bacteria 3390
67 Ga0075429_100085969 3300006880 Bacteria 2741
68 Ga0075429_100846591 3300006880 Bacteria 801
69 Ga0075436_100007772 3300006914 Bacteria 7332
70 Ga0075436_100086850 3300006914 Bacteria 2173
71 Ga0097620_100000151 3300006931 Bacteria 66183
72 Ga0075435_100010017 3300007076 Bacteria 6909
73 Ga0075435_100285924 3300007076 Bacteria 1408
74 Ga0099795_10025398 3300007788 Bacteria 1987
75 Ga0105240_10231726 3300009093 Bacteria 2146
76 Ga0111539_10019346 3300009094 Bacteria 8407
77 Ga0111539_10483693 3300009094 Bacteria 1442
78 Ga0105245_10003117 3300009098 Bacteria 14826
79 Ga0105247_10334224 3300009101 Bacteria 1061
80 Ga0114129_10049879 3300009147 Bacteria 5880
81 Ga0114129_10156058 3300009147 Bacteria 3121
82 Ga0114129_10206293 3300009147 Bacteria 2659
83 Ga0114129_10268224 3300009147 Bacteria 2285
84 Ga0114129_10525421 3300009147 Bacteria 1542
85 Ga0105241_10380769 3300009174 Bacteria 1233
86 Ga0105248_10470467 3300009177 Bacteria 1417
87 Ga0105238_10004695 3300009551 Bacteria 13513
88 Ga0105238_10042381 3300009551 Bacteria 4610
89 Ga0105249_10110498 3300009553 Bacteria 2597
90 Ga0105249_10314719 3300009553 Bacteria 1575
91 Ga0157374_10749213 3300013296 Bacteria 991
92 Ga0157374_11000900 3300013296 Unclassified 855
93 Ga0157378_10284474 3300013297 Bacteria 1595
94 Ga0157378_10305514 3300013297 Bacteria 1541
95 Ga0163162_10312435 3300013306 Bacteria 1704
96 Ga0163163_10000048 3300014325 Bacteria 130746
97 Ga0163163_10025571 3300014325 Bacteria 5629
98 Ga0157379_10200550 3300014968 Bacteria 1804
99 Ga0157376_10521339 3300014969 Bacteria 1171
100 Ga0163161_10372485 3300017792 Bacteria 1139
101 Ga0207697_10122022 3300025315 Bacteria 1122
102 Ga0207680_10008759 3300025903 Bacteria 4985
103 Ga0207685_10037714 3300025905 Bacteria 1782
104 Ga0207699_10127242 3300025906 Bacteria 1656
105 Ga0207645_10105282 3300025907 Bacteria 1823
106 Ga0207695_10000004 3300025913 Bacteria 1288665
107 Ga0207671_10007341 3300025914 Bacteria 9571
108 Ga0207693_10312125 3300025915 Bacteria 1231
109 Ga0207663_10454059 3300025916 Bacteria 989
110 Ga0207681_10028145 3300025923 Bacteria 3639
111 Ga0207681_10395638 3300025923 Bacteria 1115
112 Ga0207694_10031204 3300025924 Bacteria 4069
113 Ga0207694_10069285 3300025924 Bacteria 2756
114 Ga0207650_10153880 3300025925 Bacteria 1817
115 Ga0207659_10052464 3300025926 Bacteria 2905
116 Ga0207659_10090393 3300025926 Bacteria 2285
117 Ga0207659_10535320 3300025926 Bacteria 994
118 Ga0207700_10011240 3300025928 Bacteria 5699
119 Ga0207664_11084462 3300025929 Bacteria 716
120 Ga0207644_10007748 3300025931 Bacteria 7009
121 Ga0207706_10209241 3300025933 Bacteria 1710
122 Ga0207706_10238795 3300025933 Bacteria 1589
123 Ga0207709_10150582 3300025935 Bacteria 1611
124 Ga0207670_10590645 3300025936 Bacteria 911
125 Ga0207665_10101477 3300025939 Bacteria 2009
126 Ga0207691_10138230 3300025940 Bacteria 2148
127 Ga0207667_10000202 3300025949 Bacteria 86408
128 Ga0207667_10126385 3300025949 Bacteria 2634
129 Ga0207668_10247027 3300025972 Bacteria 1447
130 Ga0207668_10325885 3300025972 Bacteria 1276
131 Ga0207658_10133164 3300025986 Bacteria 2000
132 Ga0207658_10257292 3300025986 Bacteria 1486
133 Ga0207639_10097420 3300026041 Bacteria 2369
134 Ga0207708_10313992 3300026075 Bacteria 1277
135 Ga0207702_10163247 3300026078 Bacteria 2036
136 Ga0207702_10168743 3300026078 Bacteria 2005
137 Ga0207641_10226472 3300026088 Bacteria 1736
138 Ga0207648_10462106 3300026089 Bacteria 1157
139 Ga0207676_10164254 3300026095 Bacteria 1927
140 Ga0207675_100664896 3300026118 Bacteria 1049
141 Ga0207683_10061097 3300026121 Bacteria 3315
142 Ga0207683_10340399 3300026121 Bacteria 1376
143 Ga0207683_10344909 3300026121 Bacteria 1366
144 Ga0207683_10436388 3300026121 Bacteria 1207
145 Ga0268266_10006528 3300028379 Bacteria 10674
146 Ga0268266_10008573 3300028379 Bacteria 9085
147 Ga0268266_10051718 3300028379 Bacteria 3527
148 Ga0268265_10208790 3300028380 Bacteria 1700
149 Ga0268265_10306345 3300028380 Bacteria 1432
150 Ga0265760_10004920 3300031090 Unclassified 3823
151 Ga0265760_10015147 3300031090 Bacteria 2209
152 Ga0265325_10057572 3300031241 Unclassified 1982
153 Ga0265339_10070920 3300031249 Bacteria 1857
154 Ga0265316_10054183 3300031344 Unclassified 3141
155 Ga0307405_10183118 3300031731 Bacteria 1506
156 Ga0307409_101044208 3300031995 Bacteria 837
157 Ga0307416_100116271 3300032002 Bacteria 2371
158 Ga0373923_0053015 3300035111 Bacteria 1705
159 Ga0373936_0020180 3300035113 Bacteria 2587
160 Ga0373945_0006964 3300035116 Bacteria 3655
161 Ga0373953_0007241 3300035117 Bacteria 3707
162 Ga0373954_0000283 3300035118 Bacteria 18420
163 Ga0373956_0002700 3300035119 Bacteria 7183
164 Ga0373943_0005365 3300035170 Bacteria 5767
165 Ga0373955_0041587 3300035172 Bacteria 2464
166 Ga0373924_0019339 3300035410 Bacteria 2638
167 Ga0373935_0000314 3300035692 Bacteria 24181
168 Ga0373927_0001171 3300035695 Bacteria 19856
169 Ga0373927_0003000 3300035695 Bacteria 12251
170 Ga0373947_0000685 3300035725 Bacteria 20170
171 Ga0373947_0003684 3300035725 Bacteria 9038
172 Ga0373937_0013179 3300036401 Bacteria 7279
173 Ga0373925_0002822 3300037068 Bacteria 13701
174 Ga0436365_1936189 3300039437 Bacteria 6825
175 Ga0436360_0782076 3300039438 Bacteria 800
176 Ga0439453_0053205 3300041408 Bacteria 823
177 Ga0439433_0102037 3300041999 Bacteria 713
178 Ga0451576_0120267 3300045051 Bacteria 2734
179 Ga0495651_0411900 3300046462 Bacteria 880
180 Ga0495580_0297531 3300046472 Bacteria 1099
181 Ga0495580_0300641 3300046472 Bacteria 1093
182 Ga0495582_0316809 3300046473 Bacteria 897
183 Ga0495664_0005421 3300046477 Bacteria 7008
184 Ga0495616_0000044 3300046513 Bacteria 117255
185 Ga0495620_0057070 3300046515 Bacteria 1640
186 Ga0495628_0022394 3300046516 Bacteria 5190
187 Ga0495630_0190049 3300046517 Bacteria 1567
188 Ga0495630_0328063 3300046517 Bacteria 1170
189 Ga0495648_0121786 3300046524 Bacteria 1401
190 Ga0495654_0000053 3300046530 Bacteria 145014
191 Ga0495665_0008729 3300046531 Bacteria 5503
192 Ga0495586_0085056 3300046535 Bacteria 1742
193 Ga0495667_0356203 3300046559 Bacteria 924
194 Ga0495668_0000084 3300046616 Bacteria 153179
195 Ga0495668_0084148 3300046616 Bacteria 1744
196 Ga0495625_0240745 3300046660 Bacteria 1178
197 Ga0495635_0156086 3300046663 Bacteria 1553
198 Ga0495659_0023731 3300046664 Bacteria 2086
199 Ga0495624_0028778 3300046690 Bacteria 3628
200 Ga0495600_0149202 3300046809 Bacteria 1515
201 Ga0495636_0035133 3300047318 Bacteria 2064
202 Ga0495684_0114238 3300047471 Bacteria 2036
203 Ga0495602_0040151 3300048088 Bacteria 4297
204 Ga0496102_0315888 3300048905 Bacteria 1472
205 Ga0496104_0212270 3300048907 Bacteria 1847
206 Ga0496105_0005957 3300048908 Bacteria 9306
207 Ga0496106_0034675 3300048909 Bacteria 3771
208 Ga0496107_0495969 3300048910 Bacteria 906
209 Ga0496112_0048486 3300048915 Bacteria 4164
210 Ga0496112_0332392 3300048915 Bacteria 1463
211 Ga0496112_0634096 3300048915 Bacteria 999
212 Ga0496118_0095162 3300048921 Bacteria 2034
213 Ga0501067_0030531 3300049583 Bacteria 2989
214 Ga0501072_0664661 3300049588 Bacteria 820
215 Ga0501075_0441114 3300049591 Bacteria 993
216 Ga0501080_0594566 3300049742 Bacteria 983
217 nmdc:mga05p37_110329_c1 3300050507 Bacteria 3384
218 nmdc:mga05p37_202584_c1 3300050507 Bacteria 2402
219 nmdc:mga05p37_241074_c1 3300050507 Bacteria 2174
220 nmdc:mga05p37_524723_c1 3300050507 Bacteria 1354
221 nmdc:mga09592_39728_c1 3300050508 Bacteria 3952
222 nmdc:mga09592_53320_c1 3300050508 Bacteria 3415
223 nmdc:mga09592_806403_c1 3300050508 Bacteria 794
224 nmdc:mga0qj67_13155_c1 3300050509 Bacteria 6249
225 nmdc:mga0qj67_14226_c1 3300050509 Bacteria 6014
226 nmdc:mga0qj67_274654_c1 3300050509 Bacteria 1366
227 nmdc:mga0qj67_36184_c1 3300050509 Bacteria 3862
228 nmdc:mga0qj67_417217_c1 3300050509 Bacteria 1082
229 nmdc:mga06r32_10170_c1 3300050510 Bacteria 8493
230 nmdc:mga06r32_13073_c1 3300050510 Bacteria 7513
231 nmdc:mga06r32_154567_c1 3300050510 Bacteria 2275
232 nmdc:mga06r32_24578_c1 3300050510 Bacteria 5595
233 nmdc:mga06r32_33826_c1 3300050510 Bacteria 4816
234 nmdc:mga06r32_3768_c1 3300050510 Bacteria 13559
235 nmdc:mga06r32_46806_c1 3300050510 Bacteria 4128
236 nmdc:mga08y16_102380_c1 3300050511 Bacteria 2981
237 nmdc:mga08y16_497299_c1 3300050511 Bacteria 1239
238 nmdc:mga0n895_1083_c1 3300050512 Bacteria 19897
239 nmdc:mga0n895_41758_c1 3300050512 Bacteria 4460
240 nmdc:mga0n895_800470_c1 3300050512 Bacteria 933
241 nmdc:mga0rr50_220308_c1 3300050513 Bacteria 1567
242 nmdc:mga0rr50_22079_c1 3300050513 Bacteria 4360
243 nmdc:mga0rr50_971122_c1 3300050513 Bacteria 724
244 nmdc:mga08x19_22354_c1 3300050514 Bacteria 2238
245 nmdc:mga08x19_6073_c1 3300050514 Bacteria 7134
246 nmdc:mga0a205_1931_c1 3300050515 Bacteria 17998
247 nmdc:mga0a205_243557_c1 3300050515 Bacteria 1679
248 nmdc:mga0a205_7211_c1 3300050515 Bacteria 10051
249 Ga0500644_0135139 3300053088 Bacteria 975
250 Ga0500616_0048948 3300053153 Bacteria 2239
251 Ga0500627_0003442 3300053158 Bacteria 4893
252 Ga0587083_0027021 3300059505 Bacteria 1112
253 Ga0587091_037313 3300059511 Bacteria 942
254 Ga0587092_013759 3300059512 Bacteria 1161
255 Ga0587079_018544 3300059647 Bacteria 1221
256 2587728161 2585428057 Bacteria 6737412
257 2643931177 2643221584 Bacteria 5511711
258 2857509151 2857504554 Bacteria 5369913
259 2884964227 2884960567 Bacteria 5437054
260 8024491829 8024486573 Bacteria 6540512
261 Ga0070708_100471372
262 Ga0065165_1000312
263 Ga0065712_10010197
264 Ga0065715_10001270
265 Ga0065715_10261610
266 Ga0065715_10376771
267 Ga0070676_10189800
268 Ga0070670_100054455
269 Ga0070692_10418175
270 Ga0070668_100224994
271 Ga0070669_100291214
272 Ga0070675_100030040
273 Ga0070671_100065158
274 Ga0070667_100049410
275 Ga0070667_100270982
276 Ga0070667_100387680
277 Ga0070711_100226847
278 Ga0070705_100070398
279 Ga0070694_100221393
280 Ga0070708_100221438
281 Ga0070708_100421116
282 Ga0070678_100531239
283 Ga0070699_100005928
284 Ga0070699_100012102
285 Ga0070697_100248880
286 Ga0068853_100303936
287 Ga0070696_100202748
288 Ga0070665_100001870
289 Ga0070665_100119732
290 Ga0070665_100247634
291 Ga0070704_100031406
292 Ga0070704_100827524
293 Ga0068855_100035499
294 Ga0070664_100038966
295 Ga0068854_100465528
296 Ga0068856_100083230
297 Ga0068856_100207881
298 Ga0068859_100000151
299 Ga0068863_100023650
300 Ga0068860_100581163
301 Ga0068860_100878545
302 Ga0068860_100945724
303 Ga0068862_100264273
304 Ga0068862_100520162
305 Ga0097621_100411780
306 Ga0068871_100109488
307 Ga0075428_100008737
308 Ga0075428_100033553
309 Ga0075428_100758767
310 Ga0075430_100001337
311 Ga0075430_100030270
312 Ga0075430_100032147
313 Ga0075430_100043513
314 Ga0075431_100005990
315 Ga0075431_100014527
316 Ga0075431_100034770
317 Ga0075431_100069391
318 Ga0075431_100492227
319 Ga0075431_100984739
320 Ga0075433_10002499
321 Ga0075433_10089487
322 Ga0075433_10708302
323 Ga0075434_100001045
324 Ga0075434_100128514
325 Ga0075434_100419534
326 Ga0075429_100057385
327 Ga0075429_100085969
328 Ga0075429_100846591
329 Ga0075436_100007772
330 Ga0075436_100086850
331 Ga0097620_100000151
332 Ga0075435_100010017
333 Ga0075435_100285924
334 Ga0099795_10025398
335 Ga0105240_10231726
336 Ga0111539_10019346
337 Ga0111539_10483693
338 Ga0105245_10003117
339 Ga0105247_10334224
340 Ga0114129_10049879
341 Ga0114129_10156058
342 Ga0114129_10206293
343 Ga0114129_10268224
344 Ga0114129_10525421
345 Ga0105241_10380769
346 Ga0105248_10470467
347 Ga0105238_10004695
348 Ga0105238_10042381
349 Ga0105249_10110498
350 Ga0105249_10314719
351 Ga0157374_10749213
352 Ga0157374_11000900
353 Ga0157378_10284474
354 Ga0157378_10305514
355 Ga0163162_10312435
356 Ga0163163_10000048
357 Ga0163163_10025571
358 Ga0157379_10200550
359 Ga0157376_10521339
360 Ga0163161_10372485
361 Ga0207697_10122022
362 Ga0207680_10008759
363 Ga0207685_10037714
364 Ga0207699_10127242
365 Ga0207645_10105282
366 Ga0207695_10000004
367 Ga0207671_10007341
368 Ga0207693_10312125
369 Ga0207663_10454059
370 Ga0207681_10028145
371 Ga0207681_10395638
372 Ga0207694_10031204
373 Ga0207694_10069285
374 Ga0207650_10153880
375 Ga0207659_10052464
376 Ga0207659_10090393
377 Ga0207659_10535320
378 Ga0207700_10011240
379 Ga0207664_11084462
380 Ga0207644_10007748
381 Ga0207706_10209241
382 Ga0207706_10238795
383 Ga0207709_10150582
384 Ga0207670_10590645
385 Ga0207665_10101477
386 Ga0207691_10138230
387 Ga0207667_10000202
388 Ga0207667_10126385
389 Ga0207668_10247027
390 Ga0207668_10325885
391 Ga0207658_10133164
392 Ga0207658_10257292
393 Ga0207639_10097420
394 Ga0207708_10313992
395 Ga0207702_10163247
396 Ga0207702_10168743
397 Ga0207641_10226472
398 Ga0207648_10462106
399 Ga0207676_10164254
400 Ga0207675_100664896
401 Ga0207683_10061097
402 Ga0207683_10340399
403 Ga0207683_10344909
404 Ga0207683_10436388
405 Ga0268266_10006528
406 Ga0268266_10008573
407 Ga0268266_10051718
408 Ga0268265_10208790
409 Ga0268265_10306345
410 Ga0265760_10004920
411 Ga0265760_10015147
412 Ga0265325_10057572
413 Ga0265339_10070920
414 Ga0265316_10054183
415 Ga0307405_10183118
416 Ga0307409_101044208
417 Ga0307416_100116271
418 Ga0373923_0053015
419 Ga0373936_0020180
420 Ga0373945_0006964
421 Ga0373953_0007241
422 Ga0373954_0000283
423 Ga0373956_0002700
424 Ga0373943_0005365
425 Ga0373955_0041587
426 Ga0373924_0019339
427 Ga0373935_0000314
428 Ga0373927_0001171
429 Ga0373927_0003000
430 Ga0373947_0000685
431 Ga0373947_0003684
432 Ga0373937_0013179
433 Ga0373925_0002822
434 Ga0436365_1936189
435 Ga0436360_0782076
436 Ga0439453_0053205
437 Ga0439433_0102037
438 Ga0451576_0120267
439 Ga0495651_0411900
440 Ga0495580_0297531
441 Ga0495580_0300641
442 Ga0495582_0316809
443 Ga0495664_0005421
444 Ga0495616_0000044
445 Ga0495620_0057070
446 Ga0495628_0022394
447 Ga0495630_0190049
448 Ga0495630_0328063
449 Ga0495648_0121786
450 Ga0495654_0000053
451 Ga0495665_0008729
452 Ga0495586_0085056
453 Ga0495667_0356203
454 Ga0495668_0000084
455 Ga0495668_0084148
456 Ga0495625_0240745
457 Ga0495635_0156086
458 Ga0495659_0023731
459 Ga0495624_0028778
460 Ga0495600_0149202
461 Ga0495636_0035133
462 Ga0495684_0114238
463 Ga0495602_0040151
464 Ga0496102_0315888
465 Ga0496104_0212270
466 Ga0496105_0005957
467 Ga0496106_0034675
468 Ga0496107_0495969
469 Ga0496112_0048486
470 Ga0496112_0332392
471 Ga0496112_0634096
472 Ga0496118_0095162
473 Ga0501067_0030531
474 Ga0501072_0664661
475 Ga0501075_0441114
476 Ga0501080_0594566
477 nmdc:mga05p37_110329_c1
478 nmdc:mga05p37_202584_c1
479 nmdc:mga05p37_241074_c1
480 nmdc:mga05p37_524723_c1
481 nmdc:mga09592_39728_c1
482 nmdc:mga09592_53320_c1
483 nmdc:mga09592_806403_c1
484 nmdc:mga0qj67_13155_c1
485 nmdc:mga0qj67_14226_c1
486 nmdc:mga0qj67_274654_c1
487 nmdc:mga0qj67_36184_c1
488 nmdc:mga0qj67_417217_c1
489 nmdc:mga06r32_10170_c1
490 nmdc:mga06r32_13073_c1
491 nmdc:mga06r32_154567_c1
492 nmdc:mga06r32_24578_c1
493 nmdc:mga06r32_33826_c1
494 nmdc:mga06r32_3768_c1
495 nmdc:mga06r32_46806_c1
496 nmdc:mga08y16_102380_c1
497 nmdc:mga08y16_497299_c1
498 nmdc:mga0n895_1083_c1
499 nmdc:mga0n895_41758_c1
500 nmdc:mga0n895_800470_c1
501 nmdc:mga0rr50_220308_c1
502 nmdc:mga0rr50_22079_c1
503 nmdc:mga0rr50_971122_c1
504 nmdc:mga08x19_22354_c1
505 nmdc:mga08x19_6073_c1
506 nmdc:mga0a205_1931_c1
507 nmdc:mga0a205_243557_c1
508 nmdc:mga0a205_7211_c1
509 Ga0500644_0135139
510 Ga0500616_0048948
511 Ga0500627_0003442
512 Ga0587083_0027021
513 Ga0587091_037313
514 Ga0587092_013759
515 Ga0587079_018544
516 2587728161
517 2643931177
518 2857509151
519 2884964227
520 8024491829

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00072

Response_reg

Response regulator receiver domain

36

145

0.98

PF00196

GerE

Bacterial regulatory proteins, luxR family

169

225

0.97

PF08281

Sigma70_r4_2

Sigma-70, region 4

161

213

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
4wsz-assembly1.cif.gz_B crystal structure of the dna binding domains of wild type liar from e. faecalis 0.9547 160 224
4wu4-assembly1.cif.gz_A crystal structure of e. faecalis dna binding domain liard191n complexed with 22bp dna 0.9512 160 223
4wul-assembly1.cif.gz_A crystal structure of e. faecalis dna binding domain liard191n complexed with 26bp dna 0.9507 162 224
7ve5-assembly1.cif.gz_B c-terminal domain of vrar 0.9495 160 224
4wsz-assembly1.cif.gz_A crystal structure of the dna binding domains of wild type liar from e. faecalis 0.9491 160 224
ID Description Score Start End Superfamily
1yioA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9881 163 220 1.10.10.10
1zn2A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9874 163 220 1.10.10.10
5f64B02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9569 154 220 1.10.10.10
af_Q11028_1077_1158_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9561 163 220 1.10.10.10
1yioA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9556 163 220 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A4R2F1A4-F1-model_v4 Two-component system response regulator HydG 0.9408 72 144 GO:0000160
GO:0005524
GO:0006355
GO:0016887
GO:0043565
AF-A0A2H6GKE5-F1-model_v4 DNA-binding transcriptional regulator NtrC (Nitrogen regulation protein NR(I)) (Nitrogen regulator I) 0.9398 25 144 GO:0000160
GO:0005524
GO:0006355
GO:0016887
GO:0043565
AF-A0A351A3T2-F1-model_v4 DNA-binding transcriptional regulator NtrC (Nitrogen regulation protein NR(I)) (Nitrogen regulator I) 0.9326 26 144 GO:0000160
GO:0005524
GO:0006355
AF-A0A7V9A7Q3-F1-model_v4 Transcriptional activator protein CopR 0.9293 26 143 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993
AF-A0A2G6KCW7-F1-model_v4 Two-component system response regulator 0.9282 25 142 GO:0000160

Map