F368866

General Info

Members Datasets Scaffolds Average Seq Length
259 155 229 629

Family's Representative Sequence

Representative Sequence 3300025921|Ga0207652_10005231|Ga0207652_100052313
Length 674
Sequence MNTAAERSTIPSLIQYIVKNIHPDTQTFMSHKVGDTWVDISYKETIHKADAIAAWFLEIGIKKGDRLALIIENGPDYIFYDQALQQIGAVNTSIYPTLAEAEIEYILNDSEARTILVGSPFLMRKIIKIANNCPALIRIIPVFDDAEKTNEKPKRLNAGVICFKQVIKEGFSLVEKYRPALNAAREAILPSDLSCLIYTSGTTGTPKGVMLTHFNLTENARVSLIQLPIIEKTDIFLSFLPLSHVFERTATYHICLFEGSRIAFAQSLDLLAKNMTEVRPTVMNCVPRLLERIHDRAMKNGTSAGGIKSKIFLWALKIGKEVRLAREAGKKPGWLLTQEHKLAEKLVFSKIKERTGGRLKVMLSGGGALPKNIGEFFGDLGIKVLEGFGLTETSPVMAVTEDHRVIYGTVGRIIPGIEVAIQNVDTKHIYTIQTHDTFKEDFESEEGEIIVRGHCVMKGYWNKPEETASVIDAEGWFHTGDIGRFYRGNLQITDRLKNMLVNAYGKNIYPTPVENTYLKSPRIEQIFLVGDKREYITAFVVPARETLQETFDLDNAFFEKPEQFIDDKEIVDWVGQDVKRLSQELAKFERIKNFKVKRMPFSIDEGEITPTMKAKRKLIEKNMQGRSTKCTCRKRMRIDHSSYKNSSISLIPVTLLNFSLLISSSICSCAHVIW

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
3 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
4 2738541283 Pedobacter sp. OK701 Isolate Unclassified
5 2738541284 Pedobacter sp. YR016 Isolate Unclassified
6 2738541302 Pedobacter sp. CF074 Isolate Unclassified
7 2738543023 Pedobacter sp. OK628 Isolate Unclassified
8 2739367651 Pedobacter sp. OK291 Isolate Unclassified
9 2739367656 Pedobacter sp. CF523 Isolate Unclassified
10 2739367663 Pedobacter sp. YR510 Isolate Unclassified
11 2775506987 Pedobacter ginsengisoli T01R-27 Isolate Unclassified
12 2818991437 Pedobacter terrae 518 Isolate Unclassified
13 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
14 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
15 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
16 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
17 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
18 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
19 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
20 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
21 2902048731 Pedobacter ureilyticus THG-T11 Isolate Rhizosphere
22 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
23 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
24 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
25 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
26 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
27 2932082852 Mucilaginibacter sp. 3215 Isolate Rhizosphere
28 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
29 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
30 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
31 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified
32 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
33 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
34 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
35 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
36 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
37 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
38 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
39 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
40 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
41 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
42 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
43 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
44 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
45 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
46 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
47 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
48 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
49 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
50 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
51 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
52 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
53 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
54 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
55 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
56 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
57 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
58 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
59 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
60 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
61 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
62 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
63 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
64 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
65 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
66 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
67 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
68 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
69 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
70 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
71 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
72 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
73 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
74 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
75 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
76 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
77 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
78 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
79 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
80 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
81 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
82 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
83 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
84 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
85 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
86 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
87 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
88 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
89 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
90 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
91 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
92 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
93 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
94 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
95 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
112 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
113 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
114 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
115 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
116 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
117 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
118 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
119 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
120 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
121 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
122 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
123 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
124 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
125 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
126 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
127 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
128 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
129 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
130 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
131 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
132 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
133 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
134 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
135 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
136 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
137 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
138 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
139 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
140 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
141 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
142 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
143 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
144 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
145 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
146 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
147 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
148 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
149 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
150 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
151 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
152 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
153 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
154 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
155 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 88.42
Metatranscriptomes 0
Isolates 11.58

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.04
Nodule 0
Rhizoplane 0.39
Rhizosphere 76.83
Stem 0
Stem Tuber 0
Unclassified 12.74

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1587187 2162886007 Bacteria 9294
2 SwRhRL2b_contig_2842383 2162886007 Bacteria 9048
3 JGI24737J22298_10000371 3300001990 Bacteria 15252
4 JGI24735J21928_10000001 3300002067 Bacteria 650042
5 JGI25162J39368_1000011 3300002737 Bacteria 379156
6 JGI25162J39368_1000733 3300002737 Bacteria 22513
7 JGI25152J39213_1000425 3300002773 Bacteria 25324
8 JGI25150J39212_1000049 3300002774 Bacteria 73898
9 JGI25151J46595_10000003 3300003187 Bacteria 715330
10 JGI25153J46596_10000154 3300003215 Bacteria 69318
11 rootH1_10027007 3300003316 Bacteria 15971
12 rootH1_10041595 3300003316 Bacteria 5929
13 rootH2_10016199 3300003320 Bacteria 99895
14 rootH2_10022537 3300003320 Bacteria 2019
15 rootH2_10129508 3300003320 Bacteria 5291
16 rootH1_10009847 3300003323 Bacteria 10778
17 rootH1_10058128 3300003323 Bacteria 4046
18 Ga0055536_1000086 3300003781 Bacteria 80100
19 Ga0055530_10001976 3300003791 Bacteria 13939
20 Ga0065714_10002933 3300005288 Bacteria 54064
21 Ga0065714_10007059 3300005288 Bacteria 4516
22 Ga0065714_10069132 3300005288 Bacteria 4378
23 Ga0065704_10000227 3300005289 Bacteria 66518
24 Ga0065704_10090982 3300005289 Bacteria 2750
25 Ga0070658_10000091 3300005327 Bacteria 81263
26 Ga0070676_10000081 3300005328 Bacteria 32936
27 Ga0070680_100014310 3300005336 Bacteria 6197
28 Ga0068868_100029463 3300005338 Bacteria 4204
29 Ga0070660_100008467 3300005339 Bacteria 7195
30 Ga0070673_100006670 3300005364 Bacteria 7527
31 Ga0070659_100000222 3300005366 Bacteria 44161
32 Ga0070659_100031944 3300005366 Bacteria 4081
33 Ga0070678_100011199 3300005456 Bacteria 5522
34 Ga0070662_100000011 3300005457 Bacteria 133652
35 Ga0068867_100000841 3300005459 Bacteria 20653
36 Ga0070679_100005495 3300005530 Bacteria 11747
37 Ga0070679_100016365 3300005530 Bacteria 7152
38 Ga0068853_100012962 3300005539 Bacteria 6796
39 Ga0068853_100033605 3300005539 Bacteria 4352
40 Ga0070665_100000003 3300005548 Bacteria 811857
41 Ga0068855_100000122 3300005563 Bacteria 97622
42 Ga0068855_100001132 3300005563 Bacteria 33103
43 Ga0068855_100054815 3300005563 Bacteria 4686
44 Ga0068856_100000015 3300005614 Bacteria 157353
45 Ga0068856_100004231 3300005614 Bacteria 14328
46 Ga0068856_100018522 3300005614 Bacteria 6748
47 Ga0068852_100012091 3300005616 Bacteria 6535
48 Ga0075366_10001003 3300006195 Bacteria 13781
49 Ga0097621_100000150 3300006237 Bacteria 42846
50 Ga0068871_100001864 3300006358 Bacteria 14258
51 Ga0068865_100000547 3300006881 Bacteria 20866
52 Ga0105240_10000010 3300009093 Bacteria 537830
53 Ga0105240_10002918 3300009093 Bacteria 26976
54 Ga0105240_10017032 3300009093 Bacteria 9816
55 Ga0105240_10018298 3300009093 Bacteria 9417
56 Ga0105240_10212918 3300009093 Bacteria 2257
57 Ga0105241_10003304 3300009174 Bacteria 11996
58 Ga0105241_10031546 3300009174 Bacteria 3968
59 Ga0105242_10083816 3300009176 Bacteria 2670
60 Ga0105237_10000513 3300009545 Bacteria 54795
61 Ga0105237_10001190 3300009545 Bacteria 34836
62 Ga0105237_10001361 3300009545 Bacteria 32387
63 Ga0105237_10007199 3300009545 Bacteria 12215
64 Ga0105237_10013650 3300009545 Bacteria 8507
65 Ga0105239_10000002 3300010375 Bacteria 610298
66 Ga0105239_10000006 3300010375 Bacteria 442319
67 Ga0105239_10000256 3300010375 Bacteria 79404
68 Ga0105239_10003056 3300010375 Bacteria 20800
69 Ga0105239_10015160 3300010375 Bacteria 8541
70 Ga0105239_10019717 3300010375 Bacteria 7443
71 Ga0105239_10169036 3300010375 Bacteria 2445
72 Ga0157373_10000337 3300013100 Bacteria 38082
73 Ga0157373_10001486 3300013100 Bacteria 17867
74 Ga0157373_10002319 3300013100 Bacteria 14426
75 Ga0157373_10003418 3300013100 Bacteria 12013
76 Ga0157373_10043783 3300013100 Bacteria 3197
77 Ga0157371_10000141 3300013102 Bacteria 104396
78 Ga0157371_10000348 3300013102 Bacteria 59339
79 Ga0157371_10001213 3300013102 Bacteria 27466
80 Ga0157371_10003818 3300013102 Bacteria 13461
81 Ga0157371_10004860 3300013102 Bacteria 11554
82 Ga0157371_10005093 3300013102 Bacteria 11209
83 Ga0157370_10001987 3300013104 Bacteria 25145
84 Ga0157370_10008789 3300013104 Bacteria 10851
85 Ga0157370_10016423 3300013104 Bacteria 7494
86 Ga0157370_10026536 3300013104 Bacteria 5718
87 Ga0157370_10040439 3300013104 Bacteria 4502
88 Ga0157370_10064750 3300013104 Bacteria 3460
89 Ga0157370_10066362 3300013104 Bacteria 3413
90 Ga0157370_10134212 3300013104 Bacteria 2308
91 Ga0157369_10000005 3300013105 Bacteria 470816
92 Ga0157369_10000605 3300013105 Bacteria 46691
93 Ga0157369_10004491 3300013105 Bacteria 16443
94 Ga0157369_10120321 3300013105 Bacteria 2786
95 Ga0157374_10000277 3300013296 Bacteria 47639
96 Ga0157374_10002171 3300013296 Bacteria 16542
97 Ga0157374_10003665 3300013296 Bacteria 12913
98 Ga0157378_10027842 3300013297 Bacteria 4985
99 Ga0163162_10000024 3300013306 Bacteria 188515
100 Ga0163162_10000205 3300013306 Bacteria 54827
101 Ga0163162_10009636 3300013306 Bacteria 9394
102 Ga0157372_10000015 3300013307 Bacteria 225365
103 Ga0157372_10000418 3300013307 Bacteria 46635
104 Ga0157372_10002540 3300013307 Bacteria 19795
105 Ga0157372_10203043 3300013307 Bacteria 2296
106 Ga0157375_10083037 3300013308 Bacteria 3247
107 Ga0182008_10000009 3300014497 Bacteria 331416
108 Ga0182008_10000687 3300014497 Bacteria 24388
109 Ga0182008_10040387 3300014497 Unclassified 2330
110 Ga0182006_1000743 3300015261 Bacteria 22312
111 Ga0182006_1000875 3300015261 Bacteria 20227
112 Ga0182006_1005559 3300015261 Bacteria 5988
113 Ga0182006_1007797 3300015261 Bacteria 4880
114 Ga0182006_1014321 3300015261 Bacteria 3421
115 Ga0182007_10000080 3300015262 Bacteria 73401
116 Ga0182007_10009066 3300015262 Bacteria 4045
117 Ga0183373_1003 3300015682 Bacteria 558813
118 Ga0163161_10001026 3300017792 Bacteria 21295
119 Ga0163161_10001630 3300017792 Bacteria 16500
120 Ga0163161_10002155 3300017792 Bacteria 14200
121 Ga0163161_10009161 3300017792 Bacteria 6841
122 Ga0207427_100090 3300025231 Bacteria 133759
123 Ga0209437_100017 3300025233 Bacteria 694471
124 Ga0209437_100034 3300025233 Bacteria 494007
125 Ga0207425_1000004 3300025245 Bacteria 1092421
126 Ga0209026_1000969 3300025250 Bacteria 14324
127 Ga0209026_1002122 3300025250 Bacteria 7761
128 Ga0209026_1005443 3300025250 Bacteria 3429
129 Ga0209129_1000005 3300025258 Bacteria 777812
130 Ga0209233_1000038 3300025261 Bacteria 548972
131 Ga0209233_1001836 3300025261 Bacteria 8150
132 Ga0209676_1000001 3300025292 Bacteria 1852142
133 Ga0209025_1000009 3300025294 Bacteria 1092561
134 Ga0209758_1000010 3300025297 Bacteria 1092782
135 Ga0209050_1000408 3300025298 Bacteria 80140
136 Ga0207647_10000051 3300025904 Bacteria 87826
137 Ga0207645_10000156 3300025907 Bacteria 53492
138 Ga0207705_10000132 3300025909 Bacteria 81270
139 Ga0207695_10000019 3300025913 Bacteria 732137
140 Ga0207695_10007525 3300025913 Bacteria 13810
141 Ga0207695_10064279 3300025913 Bacteria 3779
142 Ga0207671_10000667 3300025914 Bacteria 44873
143 Ga0207671_10003166 3300025914 Bacteria 16626
144 Ga0207671_10008874 3300025914 Bacteria 8465
145 Ga0207671_10069385 3300025914 Bacteria 2627
146 Ga0207657_10041529 3300025919 Bacteria 4067
147 Ga0207652_10005231 3300025921 Bacteria 10545
148 Ga0207652_10011894 3300025921 Bacteria 7020
149 Ga0207690_10006845 3300025932 Bacteria 6763
150 Ga0207706_10000122 3300025933 Bacteria 83838
151 Ga0207704_10000041 3300025938 Bacteria 89976
152 Ga0207667_10000020 3300025949 Bacteria 374770
153 Ga0207667_10070411 3300025949 Bacteria 3640
154 Ga0207639_10094416 3300026041 Bacteria 2401
155 Ga0207639_10136273 3300026041 Bacteria 2039
156 Ga0207678_10061015 3300026067 Bacteria 3243
157 Ga0207702_10006649 3300026078 Bacteria 9941
158 Ga0207702_10013672 3300026078 Bacteria 6742
159 Ga0207683_10007331 3300026121 Bacteria 9452
160 Ga0207698_10011533 3300026142 Bacteria 5735
161 Ga0268266_10000137 3300028379 Bacteria 140685
162 Ga0307517_10009539 3300028786 Bacteria 13744
163 Ga0307515_10003099 3300028794 Bacteria 35207
164 Ga0307515_10004972 3300028794 Bacteria 27127
165 Ga0307515_10090355 3300028794 Bacteria 3842
166 Ga0265338_10062474 3300028800 Bacteria 3255
167 Ga0316177_1205603 3300030731 Bacteria 6418
168 Ga0316183_1098352 3300030742 Bacteria 13017
169 Ga0316181_1010673 3300030744 Bacteria 16726
170 Ga0307408_100000363 3300031548 Bacteria 42043
171 Ga0307408_100004437 3300031548 Bacteria 9526
172 Ga0307408_100026087 3300031548 Bacteria 4008
173 Ga0307405_10000030 3300031731 Bacteria 99574
174 Ga0307407_10000023 3300031903 Bacteria 118352
175 Ga0307412_10000084 3300031911 Bacteria 90908
176 Ga0307412_10007020 3300031911 Bacteria 6394
177 Ga0307409_100054421 3300031995 Bacteria 3082
178 Ga0307416_100000049 3300032002 Bacteria 118358
179 Ga0307414_10000555 3300032004 Bacteria 19494
180 Ga0307414_10002300 3300032004 Bacteria 9986
181 Ga0307507_10000064 3300033179 Bacteria 161226
182 Ga0307510_10003250 3300033180 Bacteria 18901
183 Ga0395899_0000002 3300037312 Bacteria 1324310
184 Ga0395899_0000332 3300037312 Bacteria 59463
185 Ga0395899_0000559 3300037312 Bacteria 39854
186 Ga0395900_0000014 3300037418 Bacteria 386513
187 Ga0395900_0000357 3300037418 Bacteria 66369
188 Ga0395898_0035155 3300037466 Bacteria 4987
189 Ga0395905_0000241 3300037471 Bacteria 82847
190 Ga0395905_0000278 3300037471 Bacteria 75859
191 Ga0395901_0000582 3300038443 Bacteria 42425
192 Ga0395901_0011284 3300038443 Bacteria 9051
193 Ga0451577_0063627 3300042876 Bacteria 3290
194 Ga0466961_0062559 3300044693 Bacteria 2365
195 Ga0495590_0012897 3300046457 Bacteria 3084
196 Ga0495650_0000014 3300046471 Bacteria 581606
197 Ga0495585_0000156 3300046492 Bacteria 72941
198 Ga0495585_0000158 3300046492 Bacteria 72351
199 Ga0495583_0014404 3300046506 Bacteria 4367
200 Ga0495606_0000241 3300046507 Bacteria 96663
201 Ga0495606_0011254 3300046507 Bacteria 7321
202 Ga0495606_0030085 3300046507 Bacteria 3799
203 Ga0495610_0000787 3300046512 Bacteria 29709
204 Ga0495610_0003815 3300046512 Bacteria 11493
205 Ga0495610_0006120 3300046512 Bacteria 8390
206 Ga0495648_0001660 3300046524 Bacteria 21571
207 Ga0495609_0001966 3300046538 Bacteria 13032
208 Ga0495633_0000081 3300046558 Bacteria 125903
209 Ga0495633_0003770 3300046558 Bacteria 9952
210 Ga0495668_0000012 3300046616 Bacteria 458817
211 Ga0495625_0000003 3300046660 Bacteria 686847
212 Ga0495625_0000705 3300046660 Bacteria 47240
213 Ga0495625_0006818 3300046660 Bacteria 10093
214 Ga0495661_0049244 3300046665 Bacteria 2556
215 Ga0495661_0067574 3300046665 Bacteria 2099
216 Ga0495649_0000002 3300046694 Bacteria 1093458
217 Ga0495687_000736 3300047443 Bacteria 35743
218 Ga0495687_000785 3300047443 Bacteria 34129
219 Ga0495686_0000582 3300047472 Bacteria 51799
220 Ga0495686_0001784 3300047472 Bacteria 21898
221 Ga0495614_0006848 3300048089 Bacteria 5098
222 Ga0496122_0001073 3300048925 Bacteria 47498
223 Ga0501249_003226 3300049679 Bacteria 3287
224 nmdc:mga0k408_33331_c1 3300050493 Bacteria 2946
225 nmdc:mga0k408_338_c1 3300050493 Bacteria 25507
226 nmdc:mga0k408_53797_c1 3300050493 Bacteria 2333
227 Ga0500635_0000335 3300053080 Bacteria 16001
228 Ga0500651_0001952 3300053093 Bacteria 10673
229 Ga0500618_000002 3300053125 Bacteria 370822

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005289 Ga0065704_10090982 Ga0065704_100909822 540
2 3300049679 Ga0501249_003226 Ga0501249_003226_748_2475 541
3 3300013104 Ga0157370_10008789 Ga0157370_100087892 547
4 3300013105 Ga0157369_10004491 Ga0157369_1000449111 547
5 3300046457 Ga0495590_0012897 Ga0495590_0012897_284_2044 547
6 3300042876 Ga0451577_0063627 Ga0451577_0063627_864_2717 552
7 3300009176 Ga0105242_10083816 Ga0105242_100838163 559
8 3300009545 Ga0105237_10001361 Ga0105237_1000136116 559
9 3300010375 Ga0105239_10019717 Ga0105239_100197175 559
10 3300037312 Ga0395899_0000559 Ga0395899_0000559_18160_19989 559
11 3300037418 Ga0395900_0000014 Ga0395900_0000014_298877_300706 559
12 3300037471 Ga0395905_0000241 Ga0395905_0000241_37186_39015 559
13 3300038443 Ga0395901_0000582 Ga0395901_0000582_35566_37395 559
14 3300013306 Ga0163162_10000024 Ga0163162_1000002485 570
15 3300009174 Ga0105241_10003304 Ga0105241_1000330411 575
16 3300010375 Ga0105239_10169036 Ga0105239_101690362 575
17 3300013296 Ga0157374_10003665 Ga0157374_1000366510 575
18 3300013297 Ga0157378_10027842 Ga0157378_100278424 575
19 3300047443 Ga0495687_000736 Ga0495687_000736_9800_11629 575
20 3300013100 Ga0157373_10002319 Ga0157373_100023192 577
21 3300003316 rootH1_10041595 rootH1_100415953 585
22 3300005288 Ga0065714_10069132 Ga0065714_100691321 585
23 3300013102 Ga0157371_10005093 Ga0157371_100050939 586
24 3300013104 Ga0157370_10016423 Ga0157370_100164232 586
25 3300005456 Ga0070678_100011199 Ga0070678_1000111995 587
26 3300005616 Ga0068852_100012091 Ga0068852_1000120915 587
27 3300013296 Ga0157374_10000277 Ga0157374_1000027749 587
28 3300025933 Ga0207706_10000122 Ga0207706_1000012266 587
29 3300026121 Ga0207683_10007331 Ga0207683_100073315 587
30 3300026142 Ga0207698_10011533 Ga0207698_100115332 587
31 3300046507 Ga0495606_0011254 Ga0495606_0011254_4014_5924 587
32 3300013308 Ga0157375_10083037 Ga0157375_100830372 588
33 3300014497 Ga0182008_10000009 Ga0182008_10000009119 588
34 3300005563 Ga0068855_100001132 Ga0068855_10000113233 589
35 3300005614 Ga0068856_100018522 Ga0068856_1000185224 589
36 3300026078 Ga0207702_10013672 Ga0207702_100136724 589
37 3300025914 Ga0207671_10069385 Ga0207671_100693851 590
38 3300025913 Ga0207695_10007525 Ga0207695_100075258 591
39 3300009093 Ga0105240_10017032 Ga0105240_100170326 594
40 iso_pu_bacteria 2842903701 2842909448 595
41 3300003320 rootH2_10016199 rootH2_1001619978 597
42 3300005539 Ga0068853_100033605 Ga0068853_1000336054 597
43 3300005548 Ga0070665_100000003 Ga0070665_100000003114 597
44 3300026041 Ga0207639_10136273 Ga0207639_101362731 597
45 3300028379 Ga0268266_10000137 Ga0268266_10000137111 597
46 iso_pu_bacteria 2902048731 2902051258 597
47 3300005288 Ga0065714_10007059 Ga0065714_100070593 598
48 iso_pu_bacteria 2599185184 2599477247 598
49 iso_pu_bacteria 2928078545 2928079163 598
50 iso_pu_bacteria 2928147474 2928148466 598
51 iso_pu_bacteria 2932082852 2932085763 598
52 3300025250 Ga0209026_1002122 Ga0209026_10021224 599
53 3300030731 Ga0316177_1205603 Ga0316177_12056033 599
54 3300030742 Ga0316183_1098352 Ga0316183_10983529 599
55 3300030744 Ga0316181_1010673 Ga0316181_10106735 599
56 iso_pu_bacteria 2585427687 2586208028 599
57 iso_pu_bacteria 2738541283 2738753958 599
58 iso_pu_bacteria 2738541284 2738762842 599
59 iso_pu_bacteria 2738541302 2738853399 599
60 iso_pu_bacteria 2738543023 2739304709 599
61 iso_pu_bacteria 2739367651 2739591133 599
62 iso_pu_bacteria 2739367656 2739615506 599
63 iso_pu_bacteria 2739367663 2739644733 599
64 iso_pu_bacteria 2775506987 2776614404 599
65 iso_pu_bacteria 2818991437 2819548918 599
66 iso_pu_bacteria 2842722452 2842723358 599
67 iso_pu_bacteria 2842909656 2842909851 599
68 iso_pu_bacteria 2849281842 2849285368 599
69 iso_pu_bacteria 2852623160 2852624130 599
70 iso_pu_bacteria 2852627209 2852627581 599
71 iso_pu_bacteria 2857627736 2857628732 599
72 iso_pu_bacteria 2884933994 2884936950 599
73 iso_pu_bacteria 2904445276 2904446087 599
74 iso_pu_bacteria 2919186247 2919187749 599
75 iso_pu_bacteria 2919437846 2919440807 599
76 iso_pu_bacteria 2939664404 2939664984 599
77 iso_pu_bacteria 2945997725 2946000165 599
78 iso_pu_bacteria 2954016120 2954017081 599
79 iso_pu_bacteria 2977232053 2977233030 599
80 3300017792 Ga0163161_10001026 Ga0163161_100010266 600
81 3300028794 Ga0307515_10090355 Ga0307515_100903551 601
82 3300031548 Ga0307408_100000363 Ga0307408_10000036313 601
83 3300001990 JGI24737J22298_10000371 JGI24737J22298_1000037111 602
84 3300002067 JGI24735J21928_10000001 JGI24735J21928_10000001381 602
85 3300003316 rootH1_10027007 rootH1_1002700710 602
86 3300006195 Ga0075366_10001003 Ga0075366_100010033 602
87 3300013306 Ga0163162_10009636 Ga0163162_100096363 602
88 3300013307 Ga0157372_10002540 Ga0157372_100025403 602
89 3300028794 Ga0307515_10003099 Ga0307515_100030995 602
90 3300028794 Ga0307515_10004972 Ga0307515_1000497213 602
91 3300033179 Ga0307507_10000064 Ga0307507_1000006463 602
92 3300037418 Ga0395900_0000357 Ga0395900_0000357_12389_14299 602
93 3300046471 Ga0495650_0000014 Ga0495650_0000014_47376_49286 602
94 3300046492 Ga0495585_0000156 Ga0495585_0000156_3117_5057 602
95 3300046492 Ga0495585_0000158 Ga0495585_0000158_6959_8869 602
96 3300046506 Ga0495583_0014404 Ga0495583_0014404_123_2033 602
97 3300046507 Ga0495606_0000241 Ga0495606_0000241_33212_35122 602
98 3300046507 Ga0495606_0030085 Ga0495606_0030085_1274_3184 602
99 3300046512 Ga0495610_0006120 Ga0495610_0006120_2202_4112 602
100 3300046524 Ga0495648_0001660 Ga0495648_0001660_14524_16464 602
101 3300046538 Ga0495609_0001966 Ga0495609_0001966_5113_7023 602
102 3300046558 Ga0495633_0000081 Ga0495633_0000081_27794_29704 602
103 3300046558 Ga0495633_0003770 Ga0495633_0003770_856_2766 602
104 3300046616 Ga0495668_0000012 Ga0495668_0000012_294134_296074 602
105 3300046660 Ga0495625_0000003 Ga0495625_0000003_187209_189119 602
106 3300046660 Ga0495625_0000705 Ga0495625_0000705_33809_35719 602
107 3300046660 Ga0495625_0006818 Ga0495625_0006818_3515_5425 602
108 3300046665 Ga0495661_0067574 Ga0495661_0067574_149_2059 602
109 3300046694 Ga0495649_0000002 Ga0495649_0000002_817874_819784 602
110 3300047443 Ga0495687_000785 Ga0495687_000785_3790_5700 602
111 3300048089 Ga0495614_0006848 Ga0495614_0006848_2842_4782 602
112 3300050493 nmdc:mga0k408_338_c1 nmdc:mga0k408_338_c1_13888_15801 602
113 3300050493 nmdc:mga0k408_53797_c1 nmdc:mga0k408_53797_c1_341_2251 602
114 3300053125 Ga0500618_000002 Ga0500618_000002_70559_72469 602
115 2162886007 SwRhRL2b_contig_1587187 SwRhRL2b_0907.00002390 603
116 2162886007 SwRhRL2b_contig_2842383 SwRhRL2b_0618.00006240 603
117 3300002737 JGI25162J39368_1000011 JGI25162J39368_100001196 603
118 3300002737 JGI25162J39368_1000733 JGI25162J39368_10007338 603
119 3300002773 JGI25152J39213_1000425 JGI25152J39213_10004257 603
120 3300002774 JGI25150J39212_1000049 JGI25150J39212_10000497 603
121 3300003187 JGI25151J46595_10000003 JGI25151J46595_100000037 603
122 3300003215 JGI25153J46596_10000154 JGI25153J46596_1000015461 603
123 3300003320 rootH2_10022537 rootH2_100225371 603
124 3300003320 rootH2_10129508 rootH2_101295084 603
125 3300003323 rootH1_10009847 rootH1_100098476 603
126 3300003323 rootH1_10058128 rootH1_100581283 603
127 3300003781 Ga0055536_1000086 Ga0055536_100008636 603
128 3300003791 Ga0055530_10001976 Ga0055530_100019766 603
129 3300005288 Ga0065714_10002933 Ga0065714_1000293311 603
130 3300005289 Ga0065704_10000227 Ga0065704_100002274 603
131 3300005327 Ga0070658_10000091 Ga0070658_1000009146 603
132 3300005328 Ga0070676_10000081 Ga0070676_100000815 603
133 3300005336 Ga0070680_100014310 Ga0070680_1000143105 603
134 3300005338 Ga0068868_100029463 Ga0068868_1000294632 603
135 3300005339 Ga0070660_100008467 Ga0070660_1000084678 603
136 3300005364 Ga0070673_100006670 Ga0070673_1000066705 603
137 3300005366 Ga0070659_100000222 Ga0070659_10000022231 603
138 3300005366 Ga0070659_100031944 Ga0070659_1000319442 603
139 3300005457 Ga0070662_100000011 Ga0070662_10000001173 603
140 3300005459 Ga0068867_100000841 Ga0068867_10000084112 603
141 3300005530 Ga0070679_100005495 Ga0070679_1000054953 603
142 3300005530 Ga0070679_100016365 Ga0070679_1000163658 603
143 3300005539 Ga0068853_100012962 Ga0068853_1000129623 603
144 3300005563 Ga0068855_100000122 Ga0068855_10000012210 603
145 3300005563 Ga0068855_100054815 Ga0068855_1000548154 603
146 3300005614 Ga0068856_100000015 Ga0068856_10000001581 603
147 3300005614 Ga0068856_100004231 Ga0068856_1000042317 603
148 3300006237 Ga0097621_100000150 Ga0097621_10000015036 603
149 3300006358 Ga0068871_100001864 Ga0068871_10000186417 603
150 3300006881 Ga0068865_100000547 Ga0068865_1000005479 603
151 3300009093 Ga0105240_10000010 Ga0105240_10000010308 603
152 3300009093 Ga0105240_10002918 Ga0105240_1000291810 603
153 3300009093 Ga0105240_10018298 Ga0105240_100182989 603
154 3300009093 Ga0105240_10212918 Ga0105240_102129182 603
155 3300009174 Ga0105241_10031546 Ga0105241_100315462 603
156 3300009545 Ga0105237_10000513 Ga0105237_100005138 603
157 3300009545 Ga0105237_10001190 Ga0105237_100011909 603
158 3300009545 Ga0105237_10007199 Ga0105237_100071998 603
159 3300009545 Ga0105237_10013650 Ga0105237_100136508 603
160 3300010375 Ga0105239_10000002 Ga0105239_1000000222 603
161 3300010375 Ga0105239_10000006 Ga0105239_1000000671 603
162 3300010375 Ga0105239_10000256 Ga0105239_1000025641 603
163 3300010375 Ga0105239_10003056 Ga0105239_100030567 603
164 3300010375 Ga0105239_10015160 Ga0105239_100151608 603
165 3300013100 Ga0157373_10000337 Ga0157373_100003378 603
166 3300013100 Ga0157373_10001486 Ga0157373_1000148612 603
167 3300013100 Ga0157373_10003418 Ga0157373_100034189 603
168 3300013100 Ga0157373_10043783 Ga0157373_100437832 603
169 3300013102 Ga0157371_10000141 Ga0157371_1000014164 603
170 3300013102 Ga0157371_10000348 Ga0157371_1000034851 603
171 3300013102 Ga0157371_10001213 Ga0157371_1000121324 603
172 3300013102 Ga0157371_10003818 Ga0157371_100038186 603
173 3300013102 Ga0157371_10004860 Ga0157371_100048608 603
174 3300013104 Ga0157370_10001987 Ga0157370_100019874 603
175 3300013104 Ga0157370_10026536 Ga0157370_100265361 603
176 3300013104 Ga0157370_10040439 Ga0157370_100404393 603
177 3300013104 Ga0157370_10064750 Ga0157370_100647502 603
178 3300013104 Ga0157370_10066362 Ga0157370_100663623 603
179 3300013104 Ga0157370_10134212 Ga0157370_101342121 603
180 3300013105 Ga0157369_10000005 Ga0157369_10000005355 603
181 3300013105 Ga0157369_10000605 Ga0157369_1000060539 603
182 3300013105 Ga0157369_10120321 Ga0157369_101203213 603
183 3300013296 Ga0157374_10002171 Ga0157374_1000217110 603
184 3300013306 Ga0163162_10000205 Ga0163162_1000020531 603
185 3300013307 Ga0157372_10000015 Ga0157372_10000015116 603
186 3300013307 Ga0157372_10000418 Ga0157372_1000041833 603
187 3300013307 Ga0157372_10203043 Ga0157372_102030431 603
188 3300014497 Ga0182008_10000687 Ga0182008_100006874 603
189 3300014497 Ga0182008_10040387 Ga0182008_100403872 603
190 3300015261 Ga0182006_1000743 Ga0182006_100074319 603
191 3300015261 Ga0182006_1000875 Ga0182006_10008758 603
192 3300015261 Ga0182006_1005559 Ga0182006_10055592 603
193 3300015261 Ga0182006_1007797 Ga0182006_10077972 603
194 3300015261 Ga0182006_1014321 Ga0182006_10143213 603
195 3300015262 Ga0182007_10000080 Ga0182007_1000008035 603
196 3300015262 Ga0182007_10009066 Ga0182007_100090663 603
197 3300015682 Ga0183373_1003 Ga0183373_1003204 603
198 3300017792 Ga0163161_10001630 Ga0163161_100016305 603
199 3300017792 Ga0163161_10002155 Ga0163161_100021556 603
200 3300017792 Ga0163161_10009161 Ga0163161_100091616 603
201 3300025231 Ga0207427_100090 Ga0207427_10009052 603
202 3300025233 Ga0209437_100017 Ga0209437_100017260 603
203 3300025233 Ga0209437_100034 Ga0209437_100034261 603
204 3300025245 Ga0207425_1000004 Ga0207425_1000004315 603
205 3300025250 Ga0209026_1000969 Ga0209026_10009699 603
206 3300025250 Ga0209026_1005443 Ga0209026_10054433 603
207 3300025258 Ga0209129_1000005 Ga0209129_1000005625 603
208 3300025261 Ga0209233_1000038 Ga0209233_1000038261 603
209 3300025261 Ga0209233_1001836 Ga0209233_10018365 603
210 3300025292 Ga0209676_1000001 Ga0209676_1000001301 603
211 3300025294 Ga0209025_1000009 Ga0209025_1000009315 603
212 3300025297 Ga0209758_1000010 Ga0209758_1000010316 603
213 3300025298 Ga0209050_1000408 Ga0209050_100040835 603
214 3300025904 Ga0207647_10000051 Ga0207647_1000005114 603
215 3300025907 Ga0207645_10000156 Ga0207645_1000015610 603
216 3300025909 Ga0207705_10000132 Ga0207705_1000013246 603
217 3300025913 Ga0207695_10000019 Ga0207695_10000019147 603
218 3300025913 Ga0207695_10064279 Ga0207695_100642795 603
219 3300025914 Ga0207671_10000667 Ga0207671_1000066738 603
220 3300025914 Ga0207671_10003166 Ga0207671_1000316611 603
221 3300025914 Ga0207671_10008874 Ga0207671_100088743 603
222 3300025919 Ga0207657_10041529 Ga0207657_100415292 603
223 3300025921 Ga0207652_10005231 Ga0207652_100052313 603
224 3300025921 Ga0207652_10011894 Ga0207652_100118941 603
225 3300025932 Ga0207690_10006845 Ga0207690_100068452 603
226 3300025938 Ga0207704_10000041 Ga0207704_1000004152 603
227 3300025949 Ga0207667_10000020 Ga0207667_10000020308 603
228 3300025949 Ga0207667_10070411 Ga0207667_100704112 603
229 3300026041 Ga0207639_10094416 Ga0207639_100944162 603
230 3300026067 Ga0207678_10061015 Ga0207678_100610152 603
231 3300026078 Ga0207702_10006649 Ga0207702_100066496 603
232 3300028786 Ga0307517_10009539 Ga0307517_100095399 603
233 3300028800 Ga0265338_10062474 Ga0265338_100624742 603
234 3300031548 Ga0307408_100004437 Ga0307408_1000044376 603
235 3300031548 Ga0307408_100026087 Ga0307408_1000260873 603
236 3300031731 Ga0307405_10000030 Ga0307405_1000003060 603
237 3300031903 Ga0307407_10000023 Ga0307407_1000002360 603
238 3300031911 Ga0307412_10000084 Ga0307412_1000008471 603
239 3300031911 Ga0307412_10007020 Ga0307412_100070203 603
240 3300031995 Ga0307409_100054421 Ga0307409_1000544212 603
241 3300032002 Ga0307416_100000049 Ga0307416_10000004951 603
242 3300032004 Ga0307414_10000555 Ga0307414_1000055515 603
243 3300032004 Ga0307414_10002300 Ga0307414_100023003 603
244 3300033180 Ga0307510_10003250 Ga0307510_100032502 603
245 3300037312 Ga0395899_0000002 Ga0395899_0000002_739112_741031 603
246 3300037312 Ga0395899_0000332 Ga0395899_0000332_4083_5996 603
247 3300037466 Ga0395898_0035155 Ga0395898_0035155_2846_4762 603
248 3300037471 Ga0395905_0000278 Ga0395905_0000278_58678_60594 603
249 3300038443 Ga0395901_0011284 Ga0395901_0011284_4263_6179 603
250 3300044693 Ga0466961_0062559 Ga0466961_0062559_361_2274 603
251 3300046512 Ga0495610_0000787 Ga0495610_0000787_26591_28504 603
252 3300046512 Ga0495610_0003815 Ga0495610_0003815_5383_7299 603
253 3300046665 Ga0495661_0049244 Ga0495661_0049244_329_2242 603
254 3300047472 Ga0495686_0000582 Ga0495686_0000582_5217_7130 603
255 3300047472 Ga0495686_0001784 Ga0495686_0001784_13561_15474 603
256 3300048925 Ga0496122_0001073 Ga0496122_0001073_883_2796 603
257 3300050493 nmdc:mga0k408_33331_c1 nmdc:mga0k408_33331_c1_67_1980 603
258 3300053080 Ga0500635_0000335 Ga0500635_0000335_8125_10038 603
259 3300053093 Ga0500651_0001952 Ga0500651_0001952_129_2042 603

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00501

AMP-binding

AMP-binding enzyme

19

461

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
5oe6-assembly2.cif.gz_B crystal structure of the n-terminal domain of pqsa in complex with 6-fluoroanthraniloyl-amp (crystal form 1) 0.8442 5 467
5oe3-assembly3.cif.gz_C crystal structure of the n-terminal domain of pqsa in complex with anthraniloyl-amp (crystal form 1) 0.8437 5 467
5oe6-assembly4.cif.gz_D crystal structure of the n-terminal domain of pqsa in complex with 6-fluoroanthraniloyl-amp (crystal form 1) 0.8437 7 468
5oe6-assembly2.cif.gz_B crystal structure of the n-terminal domain of pqsa in complex with 6-fluoroanthraniloyl-amp (crystal form 1) 0.8402 5 467
5oe5-assembly1.cif.gz_A crystal structure of the n-terminal domain of pqsa in complex with anthraniloyl-amp (crystal form 3) 0.84 5 467
ID Description Score Start End Superfamily
2d1qA01 Mainly Beta;Roll;Luciferase; domain 3;Luciferase; Domain 3 0.9221 380 467 2.30.38.10
5u95D03 Mainly Beta;Roll;Luciferase; domain 3;Luciferase; Domain 3 0.9126 383 467 2.30.38.10
5u95D03 Mainly Beta;Roll;Luciferase; domain 3;Luciferase; Domain 3 0.901 383 467 2.30.38.10
af_Q08EE8_545_705_3.30.300.30 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;ANL, C-terminal domain 0.9008 471 596 3.30.300.30
af_P33124_556_697_3.30.300.30 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;ANL, C-terminal domain 0.899 471 599 3.30.300.30
ID Description Score Start End GO Terms
AF-A0A519W532-F1-model_v4 Long-chain fatty acid--CoA ligase 0.9173 1 273 GO:0004467
GO:0016020
AF-A0A357EZS2-F1-model_v4 Long-chain fatty acid--CoA ligase 0.911 202 334 GO:0004467
GO:0016020
AF-A0A3M1HZS0-F1-model_v4 Long-chain fatty acid--CoA ligase 0.8958 57 455 GO:0004467
GO:0016020
AF-A0A3D0EWR9-F1-model_v4 Long-chain fatty acid--CoA ligase 0.8949 207 387 GO:0004467
GO:0005811
GO:0005886
GO:0035336
AF-A0A3M1HZS0-F1-model_v4 Long-chain fatty acid--CoA ligase 0.8912 57 455 GO:0004467
GO:0016020

Feature Viewer

pLDDT pTM Quality
83.72 0.73 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar

Map