F360396

General Info

Members Datasets Scaffolds Average Seq Length
249 209 127 339

Family's Representative Sequence

Representative Sequence 3300003187|JGI25151J46595_10000290|JGI25151J46595_1000029033
Length 358
Sequence MQRGRSSGGGLEMSGLAADRCKVPQAFWIASERIGLTPAAVLRQARLPATLHLNRQGLVTTAQFFALWRALEDLTADPGLGIRLVEAADTAIHPPSSLAAFHARDYRDGLQRIARFKRLCTPERLQLVEQKGECTITVEWLYATEPAPAIATGVDFATFVELGRRGTGQHLTPLRVELTRSDLKSDAHRAYFGCPIRYKAPRNALVLSSSDLDRPFPGHNPELLEILTPALASALGELQASTSITEQVKVVLKRSLASGRPELSDVARELGMSERTLQRRITEDGATFRELLVKARQELGRQLLSDPSAEIDEVACLLGYQDTSSFYRAFRDWEGVTPNQWRELNSDGLSPGPGRVVH

Samples

Sample ID Description Type Environment
1 2501025501 Paraburkholderia silvatlantica PVA5 Isolate Unclassified
2 2501025504 Paraburkholderia silvatlantica SRMrh-20 Isolate Unclassified
3 2510917014 Paraburkholderia silvatlantica SRMrh-20 Isolate Unclassified
4 2510917015 Paraburkholderia silvatlantica PVA5 Isolate Unclassified
5 2513237088 Rhizobium mesoamericanum STM6155 Isolate Nodule
6 2513237098 Bradyrhizobium elkanii WSM2783 Isolate Nodule
7 2517093001 Bradyrhizobium japonicum USDA 124 Isolate Nodule
8 2519899620 Rhizobium sp. Pop5 Isolate Nodule
9 2524023209 Rhizobium leucaenae USDA 9039 Isolate Nodule
10 2571042588 Paenibacillus zanthoxyli JH29 Isolate Unclassified
11 2582581306 Rhizobium sp. YR295 Isolate Rhizosphere
12 2593339198 Paenibacillus sp. UNCCL117 Isolate Unclassified
13 2599185239 Burkholderia sp. NFACC38-1 Isolate Rhizoplane
14 2615840698 Rhizobium multihospitium HAMBI 2975 Isolate Nodule
15 2617270742 Rhizobium miluonense HAMBI 2971 Isolate Nodule
16 2643221599 Rhizobium sp. Root708 Isolate Unclassified
17 2738541293 Rhizobium sp. GV031 Isolate Unclassified
18 2738541333 Rhizobium sophoriradicis CCBAU 03470 Isolate Unclassified
19 2802429633 Rhizobium anhuiense J3 Isolate Nodule
20 2802429636 Rhizobium anhuiense JX3 Isolate Nodule
21 2802429637 Rhizobium anhuiense C15 Isolate Nodule
22 2818991448 Rhizobium miluonense 1234 Isolate Unclassified
23 2818991452 Burkholderia cepacia 561 Isolate Unclassified
24 2824704595 Bradyrhizobium sp. HAMBI 2150 Isolate Unclassified
25 2824753945 Bradyrhizobium sp. HAMBI 2128 Isolate Unclassified
26 2824763712 Bradyrhizobium sp. HAMBI 2129 Isolate Unclassified
27 2838736955 Rhizobium cellulosilyticum SEMIA 448 Isolate Nodule
28 2841840854 Rhizobium cellulosilyticum SEMIA 444 Isolate Nodule
29 2841859092 Agrobacterium radiobacter SEMIA 4026 Isolate Nodule
30 2841949485 Bradyrhizobium sp. ERR14 Isolate Nodule
31 2842140634 Rhizobium cellulosilyticum SEMIA 452 Isolate Nodule
32 2842298080 Rhizobium leucaenae SEMIA 492 Isolate Nodule
33 2842357229 Rhizobium leucaenae SEMIA 4015 Isolate Nodule
34 2842515876 Agrobacterium radiobacter SEMIA 4072 Isolate Nodule
35 2852387548 Rhizobium jaguaris CCGE525 Isolate Unclassified
36 2856349417 Mesorhizobium sp. M4A.F.Ca.ET.090.04.2.1 Isolate Nodule
37 2856356410 Mesorhizobium sp. M4B.F.Ca.ET.088.02.2.1 Isolate Nodule
38 2856364286 Mesorhizobium sp. M00.F.Ca.ET.151.01.1.1 Isolate Nodule
39 2857504554 Caulobacter sp. R-72291 Isolate Unclassified
40 2869285874 Mesorhizobium sp. M2D.F.Ca.ET.147.01.1.1 Isolate Nodule
41 2871429161 Mesorhizobium sp. M2D.F.Ca.ET.225.01.1.1 Isolate Nodule
42 2871488783 Mesorhizobium sp. M4B.F.Ca.ET.203.01.1.1 Isolate Nodule
43 2871495908 Mesorhizobium sp. M1C.F.Ca.ET.193.01.1.1 Isolate Nodule
44 2874146452 Mesorhizobium sp. M2D.F.Ca.ET.160.01.1.1 Isolate Nodule
45 2874155637 Mesorhizobium sp. M2D.F.Ca.ET.224.01.1.1 Isolate Nodule
46 2876392853 Mesorhizobium sp. M1D.F.Ca.ET.234.01.1.1 Isolate Nodule
47 2876413966 Mesorhizobium sp. M2D.F.Ca.ET.233.01.1.1 Isolate Nodule
48 2878745973 Mesorhizobium sp. M2D.F.Ca.ET.226.01.1.1 Isolate Nodule
49 2878753008 Mesorhizobium sp. M4B.F.Ca.ET.150.01.1.1 Isolate Nodule
50 2878760144 Mesorhizobium sp. M1C.F.Ca.ET.192.01.1.1 Isolate Nodule
51 2878767105 Mesorhizobium sp. M1C.F.Ca.ET.144.01.1.1 Isolate Nodule
52 2881155292 Mesorhizobium sp. M4B.F.Ca.ET.058.02.1.1 Isolate Nodule
53 2881161766 Mesorhizobium sp. M1D.F.Ca.ET.043.01.1.1 Isolate Nodule
54 2881845957 Mesorhizobium sp. M4B.F.Ca.ET.019.03.1.1 Isolate Nodule
55 2881853255 Mesorhizobium sp. M4A.F.Ca.ET.020.02.1.1 Isolate Nodule
56 2881861095 Mesorhizobium sp. M4B.F.Ca.ET.049.02.1.2 Isolate Nodule
57 2882912400 Mesorhizobium sp. M4B.F.Ca.ET.013.02.1.1 Isolate Nodule
58 2885318864 Mesorhizobium sp. M4B.F.Ca.ET.017.02.2.1 Isolate Nodule
59 2885342637 Mesorhizobium sp. M4A.F.Ca.ET.050.02.1.1 Isolate Nodule
60 2885350715 Mesorhizobium sp. M4A.F.Ca.ET.022.05.2.1 Isolate Nodule
61 2885366525 Bradyrhizobium sp. LVM 105 Isolate Unclassified
62 2903492973 Mesorhizobium sp. M00.F.Ca.ET.220.01.1.1 Isolate Nodule
63 2903540706 Mesorhizobium sp. M1C.F.Ca.ET.212.01.1.1 Isolate Nodule
64 2904659560 Mesorhizobium sp. M1D.F.Ca.ET.184.01.1.1 Isolate Nodule
65 2904711408 Bradyrhizobium sp. USDA 3456 Isolate Unclassified
66 2906308376 Mesorhizobium sp. M2D.F.Ca.ET.185.01.1.1 Isolate Nodule
67 2906321335 Mesorhizobium sp. M2D.F.Ca.ET.206.01.1.1 Isolate Nodule
68 2922393267 Bradyrhizobium sp. WBAH10 Isolate Nodule
69 2924784321 Mesorhizobium sp. M4B.F.Ca.ET.143.01.1.1 Isolate Nodule
70 2928531327 Caulobacter sp. 1776 Isolate Rhizosphere
71 2933011516 Rhizobium sp. SEMIA 4032 Isolate Unclassified
72 2937813078 Mesorhizobium sp. M2D.F.Ca.ET.223.01.1.1 Isolate Nodule
73 2937994558 Mesorhizobium sp. M1C.F.Ca.ET.187.01.1.1 Isolate Nodule
74 2958041894 Mesorhizobium sp. M00.F.Ca.ET.149.01.1.1 Isolate Nodule
75 2958130278 Mesorhizobium sp. M2D.F.Ca.ET.148.01.1.1 Isolate Nodule
76 2958165035 Mesorhizobium sp. M1C.F.Ca.ET.196.01.1.1 Isolate Nodule
77 2958179912 Mesorhizobium sp. M2D.F.Ca.ET.171.01.1.1 Isolate Nodule
78 2961077736 Mesorhizobium sp. M2D.F.Ca.ET.178.01.1.1 Isolate Nodule
79 2961114664 Mesorhizobium sp. M1D.F.Ca.ET.231.01.1.1 Isolate Nodule
80 2961127735 Mesorhizobium sp. M4A.F.Ca.ET.029.04.2.1 Isolate Nodule
81 2961163497 Mesorhizobium sp. M1C.F.Ca.ET.176.01.1.1 Isolate Nodule
82 2961170736 Mesorhizobium sp. M4B.F.Ca.ET.200.01.1.1 Isolate Nodule
83 2965018300 Mesorhizobium sp. M1C.F.Ca.ET.188.01.1.1 Isolate Nodule
84 2967996073 Mesorhizobium sp. M4B.F.Ca.ET.169.01.1.1 Isolate Nodule
85 2968003550 Mesorhizobium sp. M4B.F.Ca.ET.215.01.1.1 Isolate Nodule
86 2968097103 Mesorhizobium sp. M1A.F.Ca.IN.020.30.1.1 Isolate Nodule
87 2968110612 Mesorhizobium sp. M1D.F.Ca.ET.183.01.1.1 Isolate Nodule
88 2968117919 Mesorhizobium atlanticum CNPSo 3140 Isolate Unclassified
89 2968128360 Mesorhizobium sp. WSM3873 Isolate Unclassified
90 2968171901 Mesorhizobium sp. M1C.F.Ca.ET.189.01.1.1 Isolate Nodule
91 2970503327 Mesorhizobium sp. M4B.F.Ca.ET.190.01.1.1 Isolate Nodule
92 2970554993 Mesorhizobium sp. M1C.F.Ca.ET.210.01.1.1 Isolate Nodule
93 2977821940 Mesorhizobium sp. M4B.F.Ca.ET.214.01.1.1 Isolate Nodule
94 2977828996 Mesorhizobium sp. M4B.F.Ca.ET.089.01.1.1 Isolate Nodule
95 2977843712 Mesorhizobium sp. M2D.F.Ca.ET.140.01.1.1 Isolate Nodule
96 2977942078 Mesorhizobium sp. M2E.F.Ca.ET.209.01.1.1 Isolate Nodule
97 2979089926 Agrobacterium sp. SORGH_AS 745 Isolate Unclassified
98 2979095461 Agrobacterium tumefaciens SORGH_AS 749 Isolate Unclassified
99 2979779861 Mesorhizobium sp. M1A.F.Ca.IN.022.02.1.1 Isolate Nodule
100 2979808191 Mesorhizobium sp. M4B.F.Ca.ET.172.01.1.1 Isolate Nodule
101 2984509177 Agrobacterium pusense SORGH_AS260 Isolate Aerial Root
102 2984518228 Agrobacterium pusense SORGH_AS285 Isolate Aerial Root
103 2984537506 Agrobacterium sp. SORGH_AS440 Isolate Aerial Root
104 2984601300 Rhizobium pusense SORGH_AS1083 Isolate Aerial Root
105 2987659509 Mesorhizobium sp. M1C.F.Ca.ET.204.01.1.1 Isolate Nodule
106 3004188549 Mesorhizobium sp. M1C.F.Ca.ET.195.01.1.1 Isolate Nodule
107 3005452660 Rhizobium grahamii BG7 Isolate Unclassified
108 3005474847 Bradyrhizobium sp. CCBAU 53421 Isolate Nodule
109 3005718088 Bradyrhizobium sp. CCBAU 53338 Isolate Nodule
110 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
111 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
112 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
113 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
114 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
115 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
116 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
117 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
118 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
119 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
120 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
121 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
122 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
123 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
124 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
125 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
126 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
127 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
128 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
129 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
130 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
131 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
132 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
133 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
134 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
135 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
136 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
137 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
138 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
139 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
140 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
141 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
142 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
143 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
144 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
145 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
146 3300009763 Root nodule microbial communities of legume samples collected from Mexico - Siratro Mexico nodule mix Metagenome Nodule
147 3300009765 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico pink nodule Metagenome Nodule
148 3300009766 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico white nodule Metagenome Nodule
149 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
150 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
151 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
152 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
153 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
154 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
155 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
156 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
157 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
158 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
159 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
160 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
161 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
162 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
163 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
164 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
165 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
166 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
167 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
168 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
169 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
170 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
171 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
172 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
173 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
174 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
175 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
176 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
177 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
178 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
179 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
180 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
181 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
182 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
183 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
184 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
185 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
186 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
187 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
188 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
189 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
190 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
191 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
192 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
193 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
194 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
195 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
196 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
197 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
198 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
199 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
200 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
201 8001845381 Ancylobacter sonchi VKM B-3145 Isolate Unclassified
202 8004374579 Mesorhizobium sp. M4B.F.Ca.ET.211.01.1.1 Isolate Nodule
203 8004387939 Mesorhizobium sp. M2D.F.Ca.ET.232.01.1.1 Isolate Nodule
204 8004640170 Mesorhizobium sp. GbtcB19 Isolate Unclassified
205 8004714634 Mesorhizobium sp. M2D.F.Ca.ET.153.01.1.1 Isolate Nodule
206 8005570704 Rhizobium anhuiense bv. trifolii WYCCWR10015 Isolate Nodule
207 8005645114 Rhizobium tropici IGFRI Rhizo-19 Isolate Rhizosphere
208 8020945358 Burkholderia sp. BE17 Isolate Rhizosphere
209 8021120328 Burkholderia sp. LS-044 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 51
Metatranscriptomes 0
Isolates 49

Biome Distribution

Category Percentage (%)
Aerial Root 1.61
Bulb 0
Endosphere 26.91
Nodule 36.14
Rhizoplane 0.4
Rhizosphere 14.86
Stem 0
Stem Tuber 0
Unclassified 20.08

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25156J39149_1001384 3300002705 Bacteria 10377
2 JGI25152J39213_1010594 3300002773 Bacteria 2097
3 JGI25150J39212_1000241 3300002774 Bacteria 29238
4 JGI25151J46595_10000290 3300003187 Bacteria 56749
5 JGI25153J46596_10000109 3300003215 Bacteria 93661
6 JGI25153J46596_10001391 3300003215 Bacteria 14493
7 rootH1_10024220 3300003316 Bacteria 3393
8 rootH2_10015632 3300003320 Bacteria 6919
9 rootH2_10073870 3300003320 Bacteria 1919
10 rootH2_10086146 3300003320 Bacteria 5229
11 rootL2_10018932 3300003322 Bacteria 7806
12 rootL2_10082295 3300003322 Bacteria 2318
13 rootL2_10215606 3300003322 Bacteria 1967
14 rootH1_10010741 3300003323 Bacteria 7512
15 rootH1_10232594 3300003323 Bacteria 1121
16 Ga0055533_1001517 3300003756 Bacteria 6067
17 Ga0055532_1000483 3300003758 Bacteria 17767
18 Ga0055526_1001715 3300003771 Bacteria 15254
19 Ga0055526_1008263 3300003771 Bacteria 5224
20 Ga0055524_1003953 3300003775 Bacteria 7014
21 Ga0055536_1000156 3300003781 Bacteria 59021
22 Ga0055536_1000475 3300003781 Bacteria 27982
23 Ga0055528_1000092 3300003790 Bacteria 71565
24 Ga0055530_10001610 3300003791 Bacteria 16192
25 Ga0055530_10005205 3300003791 Bacteria 6312
26 Ga0055531_10000121 3300003794 Bacteria 87524
27 Ga0055531_10044146 3300003794 Bacteria 1252
28 Ga0065165_1021004 3300005262 Bacteria 2279
29 Ga0065707_10013450 3300005295 Bacteria 3035
30 Ga0070668_100115106 3300005347 Bacteria 2144
31 Ga0070669_100320139 3300005353 Bacteria 1252
32 Ga0070706_100121783 3300005467 Bacteria 2431
33 Ga0070707_100229709 3300005468 Bacteria 1806
34 Ga0070679_100000431 3300005530 Bacteria 35640
35 Ga0070697_100250715 3300005536 Bacteria 1514
36 Ga0070665_100441241 3300005548 Bacteria 1311
37 Ga0070665_100615208 3300005548 Bacteria 1099
38 Ga0068855_100069320 3300005563 Bacteria 4104
39 Ga0068852_100167986 3300005616 Bacteria 2054
40 Ga0081455_10010701 3300005937 Bacteria 9278
41 Ga0081455_10014865 3300005937 Bacteria 7590
42 Ga0075368_10044347 3300006042 Bacteria 1754
43 Ga0075364_10058555 3300006051 Bacteria 2525
44 Ga0075362_10004436 3300006177 Bacteria 5044
45 Ga0075367_10043490 3300006178 Bacteria 2631
46 Ga0075369_10086211 3300006186 Unclassified 1397
47 Ga0075366_10003413 3300006195 Bacteria 8369
48 Ga0075366_10022645 3300006195 Bacteria 3657
49 Ga0079104_1000022 3300006946 Bacteria 223522
50 Ga0123340_1040307 3300009763 Bacteria 2203
51 Ga0123341_1051732 3300009765 Bacteria 2289
52 Ga0123342_1012055 3300009766 Bacteria 9213
53 Ga0157373_10014165 3300013100 Bacteria 5847
54 Ga0163161_10054245 3300017792 Bacteria 2909
55 Ga0209566_100546 3300025225 Bacteria 25422
56 Ga0209674_100157 3300025226 Bacteria 91077
57 Ga0209674_101354 3300025226 Bacteria 6679
58 Ga0209147_100021 3300025229 Bacteria 464719
59 Ga0207425_1000073 3300025245 Bacteria 113233
60 Ga0209759_1000138 3300025256 Bacteria 125136
61 Ga0209129_1000352 3300025258 Bacteria 38789
62 Ga0209233_1004678 3300025261 Bacteria 4619
63 Ga0209673_1000169 3300025273 Bacteria 134216
64 Ga0209673_1009440 3300025273 Bacteria 4224
65 Ga0209676_1000031 3300025292 Bacteria 478976
66 Ga0209676_1000134 3300025292 Bacteria 183222
67 Ga0209676_1028250 3300025292 Bacteria 1750
68 Ga0209025_1000202 3300025294 Bacteria 145750
69 Ga0209025_1000212 3300025294 Bacteria 139086
70 Ga0209025_1001912 3300025294 Bacteria 24208
71 Ga0209564_1000286 3300025295 Bacteria 102405
72 Ga0209564_1002151 3300025295 Bacteria 16647
73 Ga0209564_1007759 3300025295 Bacteria 5457
74 Ga0209758_1000242 3300025297 Bacteria 113233
75 Ga0209758_1001403 3300025297 Bacteria 28564
76 Ga0209758_1002392 3300025297 Bacteria 19290
77 Ga0209050_1000135 3300025298 Bacteria 184020
78 Ga0209050_1000348 3300025298 Bacteria 90399
79 Ga0209256_1001353 3300025299 Bacteria 25946
80 Ga0209256_1008933 3300025299 Bacteria 4512
81 Ga0207426_1001792 3300025302 Bacteria 16042
82 Ga0207426_1002170 3300025302 Bacteria 13286
83 Ga0209051_1003477 3300025303 Bacteria 10318
84 Ga0209257_1000050 3300025304 Bacteria 439325
85 Ga0209257_1011318 3300025304 Bacteria 4316
86 Ga0207652_10000862 3300025921 Bacteria 28698
87 Ga0207646_10023958 3300025922 Bacteria 5598
88 Ga0207667_10319986 3300025949 Bacteria 1584
89 Ga0207712_10140777 3300025961 Bacteria 1851
90 Ga0207698_10379221 3300026142 Bacteria 1345
91 Ga0209281_1000036 3300027111 Bacteria 369415
92 Ga0209281_1000047 3300027111 Bacteria 326514
93 Ga0209371_1017277 3300027312 Bacteria 1873
94 Ga0268266_10291096 3300028379 Bacteria 1521
95 Ga0268266_10403728 3300028379 Bacteria 1292
96 Ga0268266_10508291 3300028379 Bacteria 1151
97 Ga0268265_10086960 3300028380 Bacteria 2486
98 Ga0268256_1019268 3300030500 Bacteria 1873
99 Ga0307511_10000676 3300030521 Bacteria 36300
100 Ga0307414_10188450 3300032004 Bacteria 1667
101 Ga0395899_0000463 3300037312 Bacteria 46014
102 Ga0436365_0854287 3300039437 Bacteria 1223
103 Ga0495649_0000344 3300046694 Bacteria 39833
104 Ga0495649_0029564 3300046694 Bacteria 3030
105 Ga0496116_0052023 3300048919 Bacteria 2716
106 Ga0496117_0097205 3300048920 Bacteria 1876
107 Ga0496118_0177313 3300048921 Bacteria 1293
108 Ga0496121_0075736 3300048924 Bacteria 2687
109 Ga0496124_0043372 3300048927 Bacteria 3867
110 Ga0496125_0133560 3300048928 Bacteria 1741
111 Ga0496126_0030424 3300048929 Bacteria 5114
112 Ga0496126_0036544 3300048929 Bacteria 4592
113 Ga0496126_0126456 3300048929 Bacteria 2212
114 Ga0501238_004939 3300049671 Bacteria 1679
115 nmdc:mga03683_27114_c1 3300050489 Bacteria 2266
116 nmdc:mga03n38_50107_c1 3300050490 Bacteria 1859
117 nmdc:mga0yw44_45291_c1 3300050492 Bacteria 2637
118 nmdc:mga0k408_2333_c1 3300050493 Bacteria 10103
119 nmdc:mga06z11_23614_c1 3300050494 Bacteria 2891
120 nmdc:mga06z11_29257_c1 3300050494 Bacteria 2652
121 nmdc:mga07m45_3418_c1 3300050496 Bacteria 7645
122 nmdc:mga06r32_273543_c1 3300050510 Bacteria 1676
123 nmdc:mga0sz30_12101_c1 3300050516 Bacteria 3349
124 nmdc:mga0sz30_9143_c1 3300050516 Bacteria 3760
125 Ga0500583_0000559 3300053092 Bacteria 11272
126 Ga0500658_0000500 3300053134 Bacteria 16748
127 Ga0500658_0064354 3300053134 Unclassified 1534

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048921 Ga0496118_0177313 Ga0496118_0177313_154_1026 284
2 iso_pu_bacteria 2881853255 2881854703 285
3 3300039437 Ga0436365_0854287 Ga0436365_0854287_74_997 302
4 3300002773 JGI25152J39213_1010594 JGI25152J39213_10105942 311
5 3300002774 JGI25150J39212_1000241 JGI25150J39212_100024114 311
6 3300003215 JGI25153J46596_10000109 JGI25153J46596_1000010957 311
7 3300025245 Ga0207425_1000073 Ga0207425_100007349 311
8 3300025258 Ga0209129_1000352 Ga0209129_100035228 311
9 3300025294 Ga0209025_1000202 Ga0209025_100020248 311
10 3300025297 Ga0209758_1000242 Ga0209758_100024249 311
11 iso_pu_bacteria 2885318864 2885325983 314
12 iso_pu_bacteria 2924784321 2924788162 314
13 iso_pu_bacteria 2885366525 2885373538 317
14 iso_pu_bacteria 2871488783 2871494000 319
15 iso_pu_bacteria 2871495908 2871500239 319
16 iso_pu_bacteria 2876392853 2876399409 319
17 iso_pu_bacteria 2878753008 2878756576 319
18 iso_pu_bacteria 2878760144 2878764350 319
19 iso_pu_bacteria 2878767105 2878771431 319
20 iso_pu_bacteria 2881845957 2881848833 319
21 iso_pu_bacteria 2882912400 2882916102 319
22 iso_pu_bacteria 2903492973 2903502496 319
23 iso_pu_bacteria 2903540706 2903545052 319
24 iso_pu_bacteria 2904659560 2904665936 319
25 3300006186 Ga0075369_10086211 Ga0075369_100862111 321
26 3300048924 Ga0496121_0075736 Ga0496121_0075736_1383_2363 321
27 3300048929 Ga0496126_0126456 Ga0496126_0126456_319_1299 321
28 3300049671 Ga0501238_004939 Ga0501238_004939_406_1386 321
29 3300050516 nmdc:mga0sz30_9143_c1 nmdc:mga0sz30_9143_c1_169_1203 321
30 3300053134 Ga0500658_0000500 Ga0500658_0000500_11718_12698 321
31 3300025229 Ga0209147_100021 Ga0209147_100021316 324
32 3300048929 Ga0496126_0036544 Ga0496126_0036544_3240_4247 324
33 iso_pu_bacteria 2958041894 2958056635 324
34 3300048920 Ga0496117_0097205 Ga0496117_0097205_166_1158 325
35 iso_pu_bacteria 2513237098 2513673096 329
36 iso_pu_bacteria 2513237098 2513676744 329
37 iso_pu_bacteria 2517093001 2517104002 329
38 iso_pu_bacteria 2593339198 2595319971 329
39 iso_pu_bacteria 2824704595 2824710314 329
40 iso_pu_bacteria 2824753945 2824755616 329
41 iso_pu_bacteria 2824763712 2824766279 329
42 iso_pu_bacteria 2841949485 2841953324 329
43 iso_pu_bacteria 2904711408 2904712130 329
44 iso_pu_bacteria 2922393267 2922397219 329
45 iso_pu_bacteria 3005474847 3005481484 329
46 iso_pu_bacteria 3005718088 3005723015 329
47 iso_pu_bacteria 2617270742 2617385939 331
48 3300005548 Ga0070665_100615208 Ga0070665_1006152081 332
49 3300005937 Ga0081455_10010701 Ga0081455_1001070110 332
50 3300050494 nmdc:mga06z11_23614_c1 nmdc:mga06z11_23614_c1_1692_2708 332
51 3300050510 nmdc:mga06r32_273543_c1 nmdc:mga06r32_273543_c1_59_1075 332
52 iso_pu_bacteria 2501025504 2501407785 332
53 iso_pu_bacteria 2510917014 2511097662 332
54 iso_pu_bacteria 2881861095 2881862122 332
55 iso_pu_bacteria 2979089926 2979095442 332
56 iso_pu_bacteria 2979095461 2979097694 332
57 3300003215 JGI25153J46596_10001391 JGI25153J46596_1000139110 333
58 3300005937 Ga0081455_10014865 Ga0081455_100148654 333
59 3300009763 Ga0123340_1040307 Ga0123340_10403072 333
60 3300009765 Ga0123341_1051732 Ga0123341_10517322 333
61 3300009766 Ga0123342_1012055 Ga0123342_10120556 333
62 3300025295 Ga0209564_1007759 Ga0209564_10077593 333
63 3300025297 Ga0209758_1001403 Ga0209758_10014038 333
64 3300005563 Ga0068855_100069320 Ga0068855_1000693203 334
65 3300005616 Ga0068852_100167986 Ga0068852_1001679862 334
66 3300025949 Ga0207667_10319986 Ga0207667_103199862 334
67 3300026142 Ga0207698_10379221 Ga0207698_103792211 334
68 iso_pu_bacteria 2524023209 2524462941 334
69 iso_pu_bacteria 2615840698 2616557286 334
70 iso_pu_bacteria 2643221599 2644008158 334
71 iso_pu_bacteria 2738541293 2738805523 334
72 iso_pu_bacteria 2818991448 2819610668 334
73 iso_pu_bacteria 2838736955 2838738365 334
74 iso_pu_bacteria 2841840854 2841841265 334
75 iso_pu_bacteria 2841859092 2841862784 334
76 iso_pu_bacteria 2842140634 2842141043 334
77 iso_pu_bacteria 2842298080 2842303446 334
78 iso_pu_bacteria 2842357229 2842361960 334
79 iso_pu_bacteria 2842515876 2842519698 334
80 iso_pu_bacteria 2852387548 2852393800 334
81 iso_pu_bacteria 2852387548 2852394243 334
82 iso_pu_bacteria 2933011516 2933011944 334
83 iso_pu_bacteria 2984509177 2984511269 334
84 iso_pu_bacteria 2984518228 2984522370 334
85 iso_pu_bacteria 2984537506 2984541672 334
86 iso_pu_bacteria 2984601300 2984604032 334
87 iso_pu_bacteria 8005645114 8005646495 334
88 iso_pu_bacteria 2857504554 2857506895 335
89 iso_pu_bacteria 2928531327 2928533805 335
90 3300005548 Ga0070665_100441241 Ga0070665_1004412412 336
91 3300013100 Ga0157373_10014165 Ga0157373_100141652 336
92 3300025294 Ga0209025_1001912 Ga0209025_100191228 336
93 3300025302 Ga0207426_1002170 Ga0207426_100217017 336
94 3300028379 Ga0268266_10291096 Ga0268266_102910961 336
95 3300046694 Ga0495649_0029564 Ga0495649_0029564_1822_2865 336
96 3300053092 Ga0500583_0000559 Ga0500583_0000559_3757_4767 336
97 3300053134 Ga0500658_0064354 Ga0500658_0064354_409_1419 336
98 iso_pu_bacteria 2571042588 2573040666 336
99 iso_pu_bacteria 2968097103 2968101776 336
100 iso_pu_bacteria 2968117919 2968118389 336
101 iso_pu_bacteria 2968128360 2968133266 336
102 iso_pu_bacteria 2979779861 2979783181 336
103 iso_pu_bacteria 2510917015 2511105158 337
104 iso_pu_bacteria 2856349417 2856350427 337
105 iso_pu_bacteria 2856356410 2856361222 337
106 iso_pu_bacteria 2856364286 2856364704 337
107 iso_pu_bacteria 2869285874 2869289848 337
108 iso_pu_bacteria 2871429161 2871431969 337
109 iso_pu_bacteria 2874146452 2874155591 337
110 iso_pu_bacteria 2874155637 2874162448 337
111 iso_pu_bacteria 2876413966 2876420936 337
112 iso_pu_bacteria 2878745973 2878748575 337
113 iso_pu_bacteria 2881155292 2881157518 337
114 iso_pu_bacteria 2881161766 2881162880 337
115 iso_pu_bacteria 2885342637 2885346828 337
116 iso_pu_bacteria 2885350715 2885357224 337
117 iso_pu_bacteria 2903492973 2903506197 337
118 iso_pu_bacteria 2906308376 2906312137 337
119 iso_pu_bacteria 2906321335 2906323875 337
120 iso_pu_bacteria 2937813078 2937818039 337
121 iso_pu_bacteria 2937994558 2937998899 337
122 iso_pu_bacteria 2958130278 2958134220 337
123 iso_pu_bacteria 2958165035 2958169374 337
124 iso_pu_bacteria 2958179912 2958183866 337
125 iso_pu_bacteria 2961077736 2961081832 337
126 iso_pu_bacteria 2961114664 2961121280 337
127 iso_pu_bacteria 2961127735 2961134505 337
128 iso_pu_bacteria 2961163497 2961167835 337
129 iso_pu_bacteria 2961170736 2961172866 337
130 iso_pu_bacteria 2965018300 2965022654 337
131 iso_pu_bacteria 2967996073 2967998076 337
132 iso_pu_bacteria 2968003550 2968008728 337
133 iso_pu_bacteria 2968110612 2968117432 337
134 iso_pu_bacteria 2968171901 2968176235 337
135 iso_pu_bacteria 2970503327 2970505460 337
136 iso_pu_bacteria 2970554993 2970559194 337
137 iso_pu_bacteria 2977821940 2977825756 337
138 iso_pu_bacteria 2977828996 2977833550 337
139 iso_pu_bacteria 2977843712 2977851138 337
140 iso_pu_bacteria 2977942078 2977943920 337
141 iso_pu_bacteria 2979808191 2979810181 337
142 iso_pu_bacteria 2987659509 2987663844 337
143 iso_pu_bacteria 3004188549 3004192900 337
144 iso_pu_bacteria 8004374579 8004378164 337
145 iso_pu_bacteria 8004387939 8004391725 337
146 iso_pu_bacteria 8004640170 8004641261 337
147 iso_pu_bacteria 8004714634 8004717094 337
148 3300003316 rootH1_10024220 rootH1_100242202 338
149 3300003320 rootH2_10015632 rootH2_100156326 338
150 3300003322 rootL2_10018932 rootL2_100189322 338
151 3300003323 rootH1_10010741 rootH1_100107417 338
152 3300003771 Ga0055526_1008263 Ga0055526_10082635 338
153 3300005530 Ga0070679_100000431 Ga0070679_10000043114 338
154 3300006946 Ga0079104_1000022 Ga0079104_1000022107 338
155 3300025273 Ga0209673_1009440 Ga0209673_10094402 338
156 3300025295 Ga0209564_1002151 Ga0209564_100215115 338
157 3300025299 Ga0209256_1008933 Ga0209256_10089334 338
158 3300025302 Ga0207426_1001792 Ga0207426_100179211 338
159 3300025921 Ga0207652_10000862 Ga0207652_1000086213 338
160 3300027111 Ga0209281_1000036 Ga0209281_1000036384 338
161 3300027111 Ga0209281_1000047 Ga0209281_1000047326 338
162 3300027312 Ga0209371_1017277 Ga0209371_10172773 338
163 3300028379 Ga0268266_10508291 Ga0268266_105082911 338
164 3300030500 Ga0268256_1019268 Ga0268256_10192682 338
165 3300048919 Ga0496116_0052023 Ga0496116_0052023_1502_2536 338
166 3300048927 Ga0496124_0043372 Ga0496124_0043372_1831_2865 338
167 3300048928 Ga0496125_0133560 Ga0496125_0133560_162_1196 338
168 iso_pu_bacteria 2501025501 2501074719 338
169 iso_pu_bacteria 2510917015 2511102499 338
170 iso_pu_bacteria 2513237088 2513596578 338
171 iso_pu_bacteria 2519899620 2520376563 338
172 iso_pu_bacteria 2582581306 2585269044 338
173 iso_pu_bacteria 2599185239 2599737576 338
174 iso_pu_bacteria 2738541333 2739035027 338
175 iso_pu_bacteria 2802429633 2806044314 338
176 iso_pu_bacteria 2802429636 2806069071 338
177 iso_pu_bacteria 2802429637 2806075857 338
178 iso_pu_bacteria 2818991452 2819636730 338
179 iso_pu_bacteria 3005452660 3005455510 338
180 iso_pu_bacteria 8001845381 8001845483 338
181 iso_pu_bacteria 8005570704 8005577431 338
182 iso_pu_bacteria 8020945358 8020951735 338
183 iso_pu_bacteria 8021120328 8021124615 338
184 3300003781 Ga0055536_1000156 Ga0055536_10001566 339
185 3300003781 Ga0055536_1000475 Ga0055536_10004758 339
186 3300003791 Ga0055530_10001610 Ga0055530_1000161017 339
187 3300003791 Ga0055530_10005205 Ga0055530_100052055 339
188 3300003794 Ga0055531_10000121 Ga0055531_1000012158 339
189 3300003794 Ga0055531_10044146 Ga0055531_100441461 339
190 3300025292 Ga0209676_1000031 Ga0209676_1000031356 339
191 3300025292 Ga0209676_1000134 Ga0209676_100013494 339
192 3300025298 Ga0209050_1000135 Ga0209050_100013589 339
193 3300025298 Ga0209050_1000348 Ga0209050_100034875 339
194 3300025303 Ga0209051_1003477 Ga0209051_10034775 339
195 3300025304 Ga0209257_1000050 Ga0209257_100005074 339
196 3300025304 Ga0209257_1011318 Ga0209257_10113183 339
197 3300032004 Ga0307414_10188450 Ga0307414_101884502 339
198 3300046694 Ga0495649_0000344 Ga0495649_0000344_5575_6609 339
199 3300048929 Ga0496126_0030424 Ga0496126_0030424_457_1491 339
200 3300003187 JGI25151J46595_10000290 JGI25151J46595_1000029033 340
201 3300005467 Ga0070706_100121783 Ga0070706_1001217832 340
202 3300005536 Ga0070697_100250715 Ga0070697_1002507151 340
203 3300025294 Ga0209025_1000212 Ga0209025_100021295 340
204 3300025297 Ga0209758_1002392 Ga0209758_10023928 340
205 3300030521 Ga0307511_10000676 Ga0307511_100006765 340
206 3300037312 Ga0395899_0000463 Ga0395899_0000463_41098_42126 340
207 3300003320 rootH2_10073870 rootH2_100738701 341
208 3300003322 rootL2_10215606 rootL2_102156062 341
209 3300003323 rootH1_10232594 rootH1_102325941 341
210 3300025261 Ga0209233_1004678 Ga0209233_10046781 341
211 3300028379 Ga0268266_10403728 Ga0268266_104037281 341
212 3300002705 JGI25156J39149_1001384 JGI25156J39149_10013848 342
213 3300003320 rootH2_10086146 rootH2_100861462 342
214 3300003322 rootL2_10082295 rootL2_100822952 342
215 3300003756 Ga0055533_1001517 Ga0055533_10015175 342
216 3300003758 Ga0055532_1000483 Ga0055532_10004839 342
217 3300003771 Ga0055526_1001715 Ga0055526_10017159 342
218 3300003775 Ga0055524_1003953 Ga0055524_10039533 342
219 3300003790 Ga0055528_1000092 Ga0055528_100009259 342
220 3300005262 Ga0065165_1021004 Ga0065165_10210042 342
221 3300005295 Ga0065707_10013450 Ga0065707_100134502 342
222 3300005347 Ga0070668_100115106 Ga0070668_1001151061 342
223 3300005353 Ga0070669_100320139 Ga0070669_1003201391 342
224 3300005468 Ga0070707_100229709 Ga0070707_1002297091 342
225 3300006042 Ga0075368_10044347 Ga0075368_100443471 342
226 3300006051 Ga0075364_10058555 Ga0075364_100585553 342
227 3300006177 Ga0075362_10004436 Ga0075362_100044365 342
228 3300006178 Ga0075367_10043490 Ga0075367_100434902 342
229 3300006195 Ga0075366_10003413 Ga0075366_100034136 342
230 3300006195 Ga0075366_10022645 Ga0075366_100226453 342
231 3300017792 Ga0163161_10054245 Ga0163161_100542452 342
232 3300025225 Ga0209566_100546 Ga0209566_10054621 342
233 3300025226 Ga0209674_100157 Ga0209674_1001577 342
234 3300025226 Ga0209674_101354 Ga0209674_1013547 342
235 3300025256 Ga0209759_1000138 Ga0209759_100013828 342
236 3300025273 Ga0209673_1000169 Ga0209673_1000169120 342
237 3300025292 Ga0209676_1028250 Ga0209676_10282501 342
238 3300025295 Ga0209564_1000286 Ga0209564_100028627 342
239 3300025299 Ga0209256_1001353 Ga0209256_10013538 342
240 3300025922 Ga0207646_10023958 Ga0207646_100239584 342
241 3300025961 Ga0207712_10140777 Ga0207712_101407771 342
242 3300028380 Ga0268265_10086960 Ga0268265_100869603 342
243 3300050489 nmdc:mga03683_27114_c1 nmdc:mga03683_27114_c1_644_1690 342
244 3300050490 nmdc:mga03n38_50107_c1 nmdc:mga03n38_50107_c1_367_1413 342
245 3300050492 nmdc:mga0yw44_45291_c1 nmdc:mga0yw44_45291_c1_1083_2129 342
246 3300050493 nmdc:mga0k408_2333_c1 nmdc:mga0k408_2333_c1_6914_7960 342
247 3300050494 nmdc:mga06z11_29257_c1 nmdc:mga06z11_29257_c1_487_1533 342
248 3300050496 nmdc:mga07m45_3418_c1 nmdc:mga07m45_3418_c1_6097_7143 342
249 3300050516 nmdc:mga0sz30_12101_c1 nmdc:mga0sz30_12101_c1_1790_2836 342

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12833

HTH_18

Helix-turn-helix domain

266

344

0.98

PF12625

Arabinose_bd

Arabinose-binding domain of AraC transcription regulator, N-term

35

216

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
3mkl-assembly2.cif.gz_B crystal structure of dna-binding transcriptional dual regulator from escherichia coli k-12 0.9363 231 335
3mkl-assembly1.cif.gz_A crystal structure of dna-binding transcriptional dual regulator from escherichia coli k-12 0.9129 231 331
3mkl-assembly2.cif.gz_B crystal structure of dna-binding transcriptional dual regulator from escherichia coli k-12 0.873 231 335
3mkl-assembly1.cif.gz_A crystal structure of dna-binding transcriptional dual regulator from escherichia coli k-12 0.8726 231 331
4fe7-assembly1.cif.gz_A-2 structure of xylose-binding transcription activator xylr 0.8563 236 332
ID Description Score Start End Superfamily
af_O69703_224_336_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9375 232 340 1.10.10.60
af_P9WMJ3_231_335_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.932 231 332 1.10.10.60
af_P37639_136_255_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9319 231 338 1.10.10.60
af_P05052_134_237_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9192 231 331 1.10.10.60
1d5yD02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9123 284 331 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A2V7VUJ9-F1-model_v4 AraC family transcriptional regulator 0.9524 231 332 GO:0000976
GO:0003700
GO:0005829
AF-A0A1R1R4Q0-F1-model_v4 deleted 0.9218 233 342
AF-A0A2V7VUJ9-F1-model_v4 AraC family transcriptional regulator 0.9179 231 332 GO:0000976
GO:0003700
GO:0005829
AF-X8DIE3-F1-model_v4 Bacterial regulatory helix-turn-helix s, AraC family protein 0.917 229 331 GO:0000976
GO:0003700
GO:0005829
AF-A0A831R2I3-F1-model_v4 AraC family transcriptional regulator 0.9135 232 330 GO:0000976
GO:0003700
GO:0005829

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pLDDT pTM Quality
86.63 0.66 Medium
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Predicted Structure (AlphaFold2)

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