F360283

General Info

Members Datasets Scaffolds Average Seq Length
248 159 239 354

Family's Representative Sequence

Representative Sequence 3300050508|nmdc:mga09592_361499_c1|nmdc:mga09592_361499_c1_22_1209
Length 395
Sequence VHDQIGAAQRTQGFRAHESMGIGDDTDAWHCRASVGYHVAPMLQRTRDLRIDSFRPLLPPAILLEELPLSERGSETVSRGRDAVAHVLGGDDDRLVVVVGPCSIHDPVAAIDYARRLKRAAEEHAADLCIVMRVYFEKPRTTVGWKGLINDPRLDGSFAINEGLRLARRLLVDLADLGLPAGCEFLDPISPQYTADTVSWGAIGARTTESQVHRELASGLSMPIGFKNGTDGDVQIAIDAVRAGAHPHRFLGVTEQGLCAIVSTRGNPDCHVILRGGQSGPNYDAASVRKAASALSDAGLPARLMIDCSHGNSSKDHRRQPVVGHDIATQVAGGETAIVGVMMESFLVDGRQDLTATATLRYGQSITDACLGWDATLTVLAELAGAVKERRRALR

Samples

Sample ID Description Type Environment
1 2510917022 Rhizobium sp. AP16 Isolate Rhizosphere
2 2582581307 Rhizobium sp. YR060 Isolate Rhizosphere
3 2582581315 Agrobacterium rhizogenes YR147 Isolate Rhizosphere
4 2585427531 Agrobacterium rhizogenes YR530 Isolate Rhizosphere
5 2585427608 Agrobacterium rhizogenes OV677 Isolate Rhizosphere
6 2585427609 Agrobacterium rhizogenes CF263 Isolate Rhizosphere
7 2585428125 Agrobacterium rhizogenes CF262 Isolate Rhizosphere
8 2866065130 Micromonospora endophytica DSM 45430 Isolate Unclassified
9 2936367885 Rhizobium changzhiense WYCCWR 11290 Isolate Nodule
10 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
11 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
12 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
13 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
14 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
15 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
16 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
17 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
18 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
19 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
20 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
21 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
22 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
23 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
24 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
25 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
26 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
27 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
28 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
29 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
30 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
31 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
32 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
33 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
34 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
35 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
36 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
37 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
38 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
39 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
40 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
42 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
43 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
44 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
45 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
46 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
48 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
49 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
50 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
51 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
52 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
53 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
54 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
55 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
56 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300027717 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) Metagenome Rhizosphere
71 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
72 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
73 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
74 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
75 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
76 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
77 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
78 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
79 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
80 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
81 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
82 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
83 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
84 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
85 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
86 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
87 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
88 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
89 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
90 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
91 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
92 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
93 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
94 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
95 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
96 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
97 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
98 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
99 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
100 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
101 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
102 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
103 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
104 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
105 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
106 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
107 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
108 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
109 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
110 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
111 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
112 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
113 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
114 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
115 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
116 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
117 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
118 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
119 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
120 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
121 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
122 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
123 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
124 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
125 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
126 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
127 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
128 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
129 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
130 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
133 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
134 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
135 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
136 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
137 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
138 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
139 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
140 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
141 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
142 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
143 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
144 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
145 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
146 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
147 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
148 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
149 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
150 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
151 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
152 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
153 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
154 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
155 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
156 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
157 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
158 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
159 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.37
Metatranscriptomes 0
Isolates 3.63

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.81
Nodule 0.4
Rhizoplane 3.23
Rhizosphere 92.74
Stem 0
Stem Tuber 0
Unclassified 2.82

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25159J45721_1000230 3300002987 Bacteria 26266
2 Ga0070658_10424147 3300005327 Bacteria 1144
3 Ga0070683_100065500 3300005329 Bacteria 3383
4 Ga0070689_100023678 3300005340 Bacteria 4600
5 Ga0070689_100047984 3300005340 Bacteria 3292
6 Ga0070687_100005833 3300005343 Bacteria 5010
7 Ga0070714_100060067 3300005435 Bacteria 3262
8 Ga0070708_100000939 3300005445 Bacteria 22092
9 Ga0070708_100059442 3300005445 Bacteria 3408
10 Ga0070708_100083869 3300005445 Bacteria 2890
11 Ga0070708_100466323 3300005445 Bacteria 1191
12 Ga0070706_100001788 3300005467 Bacteria 22275
13 Ga0070706_100075734 3300005467 Bacteria 3114
14 Ga0070706_100111877 3300005467 Bacteria 2541
15 Ga0070706_100215407 3300005467 Bacteria 1793
16 Ga0070707_100035546 3300005468 Bacteria 4752
17 Ga0070707_100421884 3300005468 Bacteria 1294
18 Ga0070698_100032235 3300005471 Bacteria 5428
19 Ga0070698_100347952 3300005471 Bacteria 1413
20 Ga0070699_100002500 3300005518 Bacteria 16505
21 Ga0070699_100003969 3300005518 Bacteria 13079
22 Ga0070699_100058288 3300005518 Bacteria 3345
23 Ga0070699_100148285 3300005518 Bacteria 2074
24 Ga0070679_100271130 3300005530 Bacteria 1651
25 Ga0070697_100006754 3300005536 Bacteria 8898
26 Ga0070697_100020738 3300005536 Bacteria 5203
27 Ga0070697_100060791 3300005536 Bacteria 3080
28 Ga0070672_100178422 3300005543 Bacteria 1769
29 Ga0070696_100130443 3300005546 Bacteria 1828
30 Ga0068856_100136020 3300005614 Bacteria 2463
31 Ga0068859_100395121 3300005617 Bacteria 1478
32 Ga0068864_100129989 3300005618 Bacteria 2261
33 Ga0068863_100143468 3300005841 Bacteria 2283
34 Ga0081540_1000030 3300005983 Bacteria 148780
35 Ga0081539_10000069 3300005985 Bacteria 236854
36 Ga0075365_10065087 3300006038 Bacteria 2443
37 Ga0075432_10013384 3300006058 Bacteria 2786
38 Ga0075428_100001585 3300006844 Bacteria 24368
39 Ga0075428_100003790 3300006844 Bacteria 16573
40 Ga0075430_100051207 3300006846 Bacteria 3480
41 Ga0075431_100002392 3300006847 Bacteria 18042
42 Ga0075431_100002557 3300006847 Bacteria 17554
43 Ga0075431_100011081 3300006847 Bacteria 9074
44 Ga0075431_100017065 3300006847 Bacteria 7375
45 Ga0075431_100017369 3300006847 Bacteria 7313
46 Ga0075431_100019105 3300006847 Bacteria 6982
47 Ga0075433_10004939 3300006852 Bacteria 10443
48 Ga0075434_100050045 3300006871 Bacteria 4150
49 Ga0075429_100001819 3300006880 Bacteria 17657
50 Ga0075429_100008048 3300006880 Bacteria 9165
51 Ga0075436_100026658 3300006914 Bacteria 3979
52 Ga0075436_100133085 3300006914 Bacteria 1744
53 Ga0097620_100395108 3300006931 Bacteria 1478
54 Ga0075435_100047209 3300007076 Bacteria 3457
55 Ga0099794_10014988 3300007265 Bacteria 3410
56 Ga0099794_10023969 3300007265 Bacteria 2796
57 Ga0105240_10000027 3300009093 Bacteria 348486
58 Ga0111539_10048136 3300009094 Bacteria 5091
59 Ga0111539_10177921 3300009094 Bacteria 2485
60 Ga0105245_10032158 3300009098 Bacteria 4645
61 Ga0114129_10000002 3300009147 Bacteria 204413
62 Ga0114129_10002636 3300009147 Bacteria 24971
63 Ga0114129_10004013 3300009147 Bacteria 20781
64 Ga0114129_10006769 3300009147 Bacteria 16269
65 Ga0114129_10012316 3300009147 Bacteria 12169
66 Ga0114129_10016295 3300009147 Bacteria 10579
67 Ga0114129_10018756 3300009147 Bacteria 9854
68 Ga0114129_10063093 3300009147 Bacteria 5175
69 Ga0114129_10117448 3300009147 Bacteria 3666
70 Ga0114129_10376035 3300009147 Bacteria 1877
71 Ga0105248_10036049 3300009177 Bacteria 5533
72 Ga0105249_10320632 3300009553 Bacteria 1561
73 Ga0157378_10196818 3300013297 Bacteria 1904
74 Ga0163162_10162904 3300013306 Bacteria 2353
75 Ga0157372_10039125 3300013307 Bacteria 5235
76 Ga0157376_10001672 3300014969 Bacteria 14728
77 Ga0213873_10030476 3300021358 Bacteria 1336
78 Ga0213876_10064596 3300021384 Bacteria 1931
79 Ga0213875_10046780 3300021388 Bacteria 2030
80 Ga0207705_10288981 3300025909 Bacteria 1256
81 Ga0207684_10000013 3300025910 Bacteria 443468
82 Ga0207684_10000699 3300025910 Bacteria 39632
83 Ga0207684_10081550 3300025910 Bacteria 2753
84 Ga0207684_10172025 3300025910 Bacteria 1867
85 Ga0207646_10004005 3300025922 Bacteria 16300
86 Ga0207646_10024061 3300025922 Bacteria 5584
87 Ga0207646_10298574 3300025922 Bacteria 1455
88 Ga0207694_10134655 3300025924 Bacteria 1983
89 Ga0207687_10044353 3300025927 Bacteria 3068
90 Ga0207687_10181963 3300025927 Bacteria 1629
91 Ga0207670_10013023 3300025936 Bacteria 4890
92 Ga0207670_10088447 3300025936 Bacteria 2184
93 Ga0207691_10087796 3300025940 Bacteria 2789
94 Ga0207661_10057856 3300025944 Bacteria 3119
95 Ga0207667_10044598 3300025949 Bacteria 4698
96 Ga0207658_10185088 3300025986 Bacteria 1727
97 Ga0207641_10021820 3300026088 Bacteria 5265
98 Ga0207676_10245159 3300026095 Bacteria 1610
99 Ga0207674_10190762 3300026116 Bacteria 1999
100 Ga0209588_1008435 3300027671 Bacteria 3056
101 Ga0209998_10008243 3300027717 Bacteria 2161
102 Ga0207428_10002458 3300027907 Bacteria 18507
103 Ga0265334_10013604 3300028573 Bacteria 3405
104 Ga0265318_10001664 3300028577 Bacteria 12779
105 Ga0265338_10007980 3300028800 Bacteria 12957
106 Ga0265330_10003278 3300031235 Bacteria 8519
107 Ga0265330_10020324 3300031235 Bacteria 3034
108 Ga0265332_10013111 3300031238 Bacteria 3673
109 Ga0265328_10000127 3300031239 Bacteria 36451
110 Ga0265328_10005950 3300031239 Bacteria 5194
111 Ga0265320_10003862 3300031240 Bacteria 9926
112 Ga0265320_10008747 3300031240 Bacteria 6164
113 Ga0265329_10001867 3300031242 Bacteria 9963
114 Ga0265339_10005208 3300031249 Bacteria 8699
115 Ga0265331_10010093 3300031250 Bacteria 5245
116 Ga0265316_10011215 3300031344 Bacteria 8106
117 Ga0307408_100004821 3300031548 Bacteria 9089
118 Ga0307408_100116028 3300031548 Bacteria 2066
119 Ga0265314_10001658 3300031711 Bacteria 24322
120 Ga0265314_10003568 3300031711 Bacteria 14988
121 Ga0265314_10015303 3300031711 Bacteria 6091
122 Ga0265342_10003597 3300031712 Bacteria 12647
123 Ga0265342_10008909 3300031712 Bacteria 7134
124 Ga0316576_10072017 3300031727 Bacteria 2550
125 Ga0307405_10364872 3300031731 Bacteria 1119
126 Ga0316577_10054490 3300031733 Bacteria 2232
127 Ga0307412_10027510 3300031911 Bacteria 3547
128 Ga0307409_100159833 3300031995 Bacteria 1969
129 Ga0307416_100005515 3300032002 Bacteria 7779
130 Ga0307411_10150290 3300032005 Bacteria 1730
131 Ga0307411_10189675 3300032005 Bacteria 1568
132 Ga0373934_0023220 3300035086 Bacteria 2396
133 Ga0373943_0072466 3300035170 Bacteria 1747
134 Ga0373933_0000142 3300035724 Bacteria 46265
135 Ga0373925_0006028 3300037068 Bacteria 8971
136 Ga0395900_0154502 3300037418 Bacteria 2344
137 Ga0395905_0000078 3300037471 Bacteria 161593
138 Ga0395905_0048235 3300037471 Bacteria 3991
139 Ga0395905_0372430 3300037471 Bacteria 1321
140 Ga0436364_0442241 3300037853 Bacteria 10988
141 Ga0400486_22416 3300038742 Bacteria 1912
142 Ga0436365_1933910 3300039437 Bacteria 1203
143 Ga0436362_0019025 3300039453 Bacteria 1407
144 Ga0436362_0694088 3300039453 Bacteria 3540
145 Ga0439433_0016334 3300041999 Bacteria 1644
146 Ga0439449_0002122 3300042007 Bacteria 7783
147 Ga0439457_008391 3300042014 Bacteria 2439
148 Ga0439462_0008574 3300042015 Bacteria 2581
149 Ga0450893_0001512 3300042532 Bacteria 3575
150 Ga0451577_0408917 3300042876 Bacteria 1232
151 Ga0466969_0013703 3300044656 Bacteria 4267
152 Ga0453683_0042211 3300044673 Bacteria 2864
153 Ga0466966_0016647 3300044684 Bacteria 4856
154 Ga0466961_0015289 3300044693 Bacteria 4929
155 Ga0466963_0101068 3300044694 Bacteria 1974
156 Ga0466970_0026473 3300044765 Bacteria 3039
157 Ga0466959_0002388 3300045049 Bacteria 11970
158 Ga0451576_0001098 3300045051 Bacteria 49381
159 Ga0451576_0270171 3300045051 Bacteria 1777
160 Ga0466967_0508281 3300045976 Bacteria 1183
161 Ga0495650_0008363 3300046471 Bacteria 6050
162 Ga0495586_0013938 3300046535 Bacteria 4266
163 Ga0495674_0005728 3300047319 Bacteria 11907
164 Ga0496100_0015352 3300048903 Bacteria 4471
165 Ga0496101_0009709 3300048904 Bacteria 6334
166 Ga0496107_0027319 3300048910 Bacteria 4052
167 Ga0496109_0009981 3300048912 Bacteria 8107
168 Ga0496113_0025253 3300048916 Bacteria 4233
169 Ga0496114_0001423 3300048917 Bacteria 18162
170 Ga0496114_0224860 3300048917 Bacteria 1648
171 Ga0496115_0041653 3300048918 Bacteria 3656
172 Ga0496124_0099234 3300048927 Bacteria 2362
173 Ga0501039_0192472 3300049575 Bacteria 1604
174 Ga0501040_0013439 3300049576 Bacteria 5380
175 Ga0501040_0059141 3300049576 Bacteria 2633
176 Ga0501041_0131395 3300049577 Bacteria 1559
177 Ga0501043_0036031 3300049579 Bacteria 3892
178 Ga0501048_0005903 3300049582 Bacteria 9324
179 Ga0501048_0028476 3300049582 Bacteria 4055
180 Ga0501067_0006774 3300049583 Bacteria 6355
181 Ga0501069_0008690 3300049585 Bacteria 5349
182 Ga0501069_0028215 3300049585 Bacteria 3077
183 Ga0501072_0003149 3300049588 Bacteria 12414
184 Ga0501072_0003970 3300049588 Bacteria 11189
185 Ga0501072_0094927 3300049588 Bacteria 2370
186 Ga0501073_0020711 3300049589 Bacteria 4743
187 Ga0501075_0004277 3300049591 Bacteria 9651
188 Ga0501075_0005680 3300049591 Bacteria 8539
189 Ga0501075_0009104 3300049591 Bacteria 6936
190 Ga0501075_0049403 3300049591 Bacteria 3162
191 Ga0501076_0010744 3300049592 Bacteria 6807
192 Ga0501076_0025619 3300049592 Bacteria 4567
193 Ga0501076_0107770 3300049592 Bacteria 2250
194 Ga0501076_0159242 3300049592 Bacteria 1839
195 Ga0501077_0169890 3300049593 Bacteria 1385
196 Ga0501079_0016051 3300049741 Bacteria 5722
197 Ga0501079_0074216 3300049741 Bacteria 2629
198 Ga0501080_0197903 3300049742 Bacteria 1845
199 Ga0501081_0003471 3300049743 Bacteria 10071
200 Ga0501081_0018572 3300049743 Bacteria 4620
201 Ga0501081_0103073 3300049743 Bacteria 2019
202 Ga0501081_0112230 3300049743 Bacteria 1935
203 Ga0501081_0311014 3300049743 Bacteria 1157
204 Ga0501035_0004660 3300049822 Bacteria 13015
205 Ga0501044_0116805 3300049823 Bacteria 2673
206 Ga0501045_0012104 3300049824 Bacteria 6070
207 Ga0501045_0038778 3300049824 Bacteria 3466
208 nmdc:mga05p37_115184_c1 3300050507 Bacteria 3305
209 nmdc:mga05p37_1202_c1 3300050507 Bacteria 29954
210 nmdc:mga05p37_16172_c1 3300050507 Bacteria 8983
211 nmdc:mga05p37_2039_c1 3300050507 Bacteria 23574
212 nmdc:mga05p37_25055_c1 3300050507 Bacteria 7252
213 nmdc:mga05p37_324243_c1 3300050507 Bacteria 1822
214 nmdc:mga05p37_4609_c1 3300050507 Bacteria 16115
215 nmdc:mga05p37_535628_c1 3300050507 Bacteria 1336
216 nmdc:mga09592_103254_c1 3300050508 Bacteria 2442
217 nmdc:mga09592_1841_c1 3300050508 Bacteria 17052
218 nmdc:mga09592_225833_c1 3300050508 Bacteria 1622
219 nmdc:mga09592_361499_c1 3300050508 Bacteria 1256
220 nmdc:mga0qj67_28413_c1 3300050509 Bacteria 4341
221 nmdc:mga06r32_11791_c1 3300050510 Bacteria 7873
222 nmdc:mga06r32_121341_c1 3300050510 Bacteria 2578
223 nmdc:mga06r32_213797_c1 3300050510 Bacteria 1916
224 nmdc:mga06r32_72997_c1 3300050510 Bacteria 3323
225 nmdc:mga06r32_97511_c1 3300050510 Bacteria 2881
226 nmdc:mga08y16_88484_c1 3300050511 Bacteria 3228
227 nmdc:mga08y16_9755_c1 3300050511 Bacteria 10084
228 nmdc:mga0n895_62621_c1 3300050512 Bacteria 3677
229 nmdc:mga0n895_941_c1 3300050512 Bacteria 21039
230 nmdc:mga0rr50_1073_c1 3300050513 Bacteria 14883
231 nmdc:mga08x19_14609_c1 3300050514 Bacteria 4765
232 nmdc:mga0a205_172770_c1 3300050515 Bacteria 2057
233 nmdc:mga0a205_40909_c1 3300050515 Bacteria 4464
234 Ga0495619_0084838 3300053085 Bacteria 2138
235 Ga0501084_0002993 3300054114 Bacteria 13678
236 Ga0501084_0012757 3300054114 Bacteria 6961
237 Ga0501082_0010603 3300060353 Bacteria 7932
238 Ga0501082_0034879 3300060353 Bacteria 4336
239 Ga0530510_0093000 3300061734 Bacteria 2201

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049822 Ga0501035_0004660 Ga0501035_0004660_1595_2446 282
2 3300049743 Ga0501081_0103073 Ga0501081_0103073_1048_2001 316
3 3300005329 Ga0070683_100065500 Ga0070683_1000655002 319
4 3300005530 Ga0070679_100271130 Ga0070679_1002711302 319
5 3300025944 Ga0207661_10057856 Ga0207661_100578562 319
6 3300028800 Ga0265338_10007980 Ga0265338_100079806 334
7 3300031239 Ga0265328_10005950 Ga0265328_100059501 334
8 3300031240 Ga0265320_10008747 Ga0265320_100087476 334
9 3300031249 Ga0265339_10005208 Ga0265339_100052087 334
10 3300031711 Ga0265314_10003568 Ga0265314_1000356811 334
11 3300031712 Ga0265342_10008909 Ga0265342_100089092 334
12 3300005518 Ga0070699_100148285 Ga0070699_1001482852 337
13 3300005327 Ga0070658_10424147 Ga0070658_104241471 340
14 3300025909 Ga0207705_10288981 Ga0207705_102889812 340
15 3300026095 Ga0207676_10245159 Ga0207676_102451592 340
16 3300005445 Ga0070708_100059442 Ga0070708_1000594423 345
17 3300005467 Ga0070706_100111877 Ga0070706_1001118772 345
18 3300005468 Ga0070707_100035546 Ga0070707_1000355462 345
19 3300005518 Ga0070699_100002500 Ga0070699_1000025006 345
20 3300007265 Ga0099794_10023969 Ga0099794_100239693 345
21 3300025910 Ga0207684_10172025 Ga0207684_101720252 345
22 3300025922 Ga0207646_10024061 Ga0207646_100240615 345
23 3300044673 Ga0453683_0042211 Ga0453683_0042211_1377_2417 345
24 3300044694 Ga0466963_0101068 Ga0466963_0101068_583_1644 345
25 3300045976 Ga0466967_0508281 Ga0466967_0508281_37_1098 345
26 3300031235 Ga0265330_10020324 Ga0265330_100203243 346
27 3300031711 Ga0265314_10001658 Ga0265314_100016585 346
28 3300037471 Ga0395905_0048235 Ga0395905_0048235_2580_3626 346
29 3300042532 Ga0450893_0001512 Ga0450893_0001512_628_1692 346
30 3300037471 Ga0395905_0000078 Ga0395905_0000078_69440_70492 348
31 3300044656 Ga0466969_0013703 Ga0466969_0013703_2108_3160 348
32 3300044684 Ga0466966_0016647 Ga0466966_0016647_1904_2956 348
33 3300044693 Ga0466961_0015289 Ga0466961_0015289_3172_4224 348
34 3300044765 Ga0466970_0026473 Ga0466970_0026473_1654_2706 348
35 3300045049 Ga0466959_0002388 Ga0466959_0002388_1297_2349 348
36 3300050511 nmdc:mga08y16_88484_c1 nmdc:mga08y16_88484_c1_1520_2572 348
37 3300006846 Ga0075430_100051207 Ga0075430_1000512075 349
38 3300006847 Ga0075431_100002392 Ga0075431_10000239212 349
39 3300006847 Ga0075431_100017369 Ga0075431_1000173698 349
40 3300006880 Ga0075429_100001819 Ga0075429_1000018199 349
41 3300009147 Ga0114129_10012316 Ga0114129_1001231614 349
42 3300009147 Ga0114129_10376035 Ga0114129_103760352 349
43 3300027717 Ga0209998_10008243 Ga0209998_100082432 349
44 3300031548 Ga0307408_100116028 Ga0307408_1001160281 349
45 3300031995 Ga0307409_100159833 Ga0307409_1001598333 349
46 3300037471 Ga0395905_0372430 Ga0395905_0372430_92_1147 349
47 3300049576 Ga0501040_0059141 Ga0501040_0059141_213_1265 349
48 3300049577 Ga0501041_0131395 Ga0501041_0131395_147_1199 349
49 3300049585 Ga0501069_0008690 Ga0501069_0008690_3476_4528 349
50 3300049588 Ga0501072_0003149 Ga0501072_0003149_6739_7791 349
51 3300049588 Ga0501072_0094927 Ga0501072_0094927_262_1314 349
52 3300049591 Ga0501075_0004277 Ga0501075_0004277_2007_3059 349
53 3300049591 Ga0501075_0049403 Ga0501075_0049403_2053_3105 349
54 3300049592 Ga0501076_0025619 Ga0501076_0025619_2635_3687 349
55 3300049592 Ga0501076_0107770 Ga0501076_0107770_314_1366 349
56 3300049593 Ga0501077_0169890 Ga0501077_0169890_161_1213 349
57 3300049741 Ga0501079_0016051 Ga0501079_0016051_3341_4393 349
58 3300049743 Ga0501081_0018572 Ga0501081_0018572_21_1073 349
59 3300049743 Ga0501081_0112230 Ga0501081_0112230_19_1071 349
60 3300049824 Ga0501045_0038778 Ga0501045_0038778_177_1229 349
61 3300050507 nmdc:mga05p37_25055_c1 nmdc:mga05p37_25055_c1_841_1893 349
62 3300050509 nmdc:mga0qj67_28413_c1 nmdc:mga0qj67_28413_c1_1311_2363 349
63 3300054114 Ga0501084_0002993 Ga0501084_0002993_3118_4170 349
64 3300060353 Ga0501082_0010603 Ga0501082_0010603_3036_4088 349
65 iso_pu_bacteria 2582581315 2585325721 349
66 iso_pu_bacteria 2585427608 2585901349 349
67 3300005467 Ga0070706_100215407 Ga0070706_1002154072 350
68 3300050508 nmdc:mga09592_225833_c1 nmdc:mga09592_225833_c1_119_1177 350
69 3300050510 nmdc:mga06r32_121341_c1 nmdc:mga06r32_121341_c1_1266_2324 350
70 iso_pu_bacteria 2510917022 2511134406 350
71 iso_pu_bacteria 2582581307 2585275892 350
72 iso_pu_bacteria 2585427531 2585559188 350
73 iso_pu_bacteria 2585427609 2585905437 350
74 iso_pu_bacteria 2585428125 2587979447 350
75 iso_pu_bacteria 2936367885 2936372677 350
76 3300005340 Ga0070689_100047984 Ga0070689_1000479842 351
77 3300005435 Ga0070714_100060067 Ga0070714_1000600673 351
78 3300005445 Ga0070708_100083869 Ga0070708_1000838692 351
79 3300005467 Ga0070706_100075734 Ga0070706_1000757342 351
80 3300005471 Ga0070698_100347952 Ga0070698_1003479521 351
81 3300005518 Ga0070699_100058288 Ga0070699_1000582882 351
82 3300005536 Ga0070697_100060791 Ga0070697_1000607913 351
83 3300005546 Ga0070696_100130443 Ga0070696_1001304431 351
84 3300005614 Ga0068856_100136020 Ga0068856_1001360202 351
85 3300007265 Ga0099794_10014988 Ga0099794_100149882 351
86 3300009147 Ga0114129_10117448 Ga0114129_101174482 351
87 3300013307 Ga0157372_10039125 Ga0157372_100391252 351
88 3300025910 Ga0207684_10081550 Ga0207684_100815501 351
89 3300025922 Ga0207646_10298574 Ga0207646_102985741 351
90 3300025924 Ga0207694_10134655 Ga0207694_101346551 351
91 3300025936 Ga0207670_10088447 Ga0207670_100884472 351
92 3300027671 Ga0209588_1008435 Ga0209588_10084352 351
93 3300032005 Ga0307411_10150290 Ga0307411_101502902 351
94 3300042876 Ga0451577_0408917 Ga0451577_0408917_113_1174 351
95 3300046471 Ga0495650_0008363 Ga0495650_0008363_3735_4796 351
96 3300050507 nmdc:mga05p37_324243_c1 nmdc:mga05p37_324243_c1_702_1760 351
97 3300005445 Ga0070708_100000939 Ga0070708_10000093915 352
98 3300005445 Ga0070708_100466323 Ga0070708_1004663231 352
99 3300005467 Ga0070706_100001788 Ga0070706_10000178828 352
100 3300005468 Ga0070707_100421884 Ga0070707_1004218841 352
101 3300005471 Ga0070698_100032235 Ga0070698_1000322355 352
102 3300005518 Ga0070699_100003969 Ga0070699_10000396911 352
103 3300005536 Ga0070697_100006754 Ga0070697_1000067548 352
104 3300005536 Ga0070697_100020738 Ga0070697_1000207384 352
105 3300005543 Ga0070672_100178422 Ga0070672_1001784222 352
106 3300005617 Ga0068859_100395121 Ga0068859_1003951212 352
107 3300005618 Ga0068864_100129989 Ga0068864_1001299892 352
108 3300006038 Ga0075365_10065087 Ga0075365_100650872 352
109 3300006058 Ga0075432_10013384 Ga0075432_100133843 352
110 3300006844 Ga0075428_100001585 Ga0075428_10000158516 352
111 3300006931 Ga0097620_100395108 Ga0097620_1003951082 352
112 3300009094 Ga0111539_10048136 Ga0111539_100481363 352
113 3300009098 Ga0105245_10032158 Ga0105245_100321584 352
114 3300009147 Ga0114129_10000002 Ga0114129_1000000215 352
115 3300009147 Ga0114129_10004013 Ga0114129_1000401315 352
116 3300009553 Ga0105249_10320632 Ga0105249_103206322 352
117 3300013297 Ga0157378_10196818 Ga0157378_101968182 352
118 3300013306 Ga0163162_10162904 Ga0163162_101629042 352
119 3300014969 Ga0157376_10001672 Ga0157376_1000167211 352
120 3300025910 Ga0207684_10000013 Ga0207684_10000013363 352
121 3300025910 Ga0207684_10000699 Ga0207684_1000069933 352
122 3300025922 Ga0207646_10004005 Ga0207646_100040054 352
123 3300025927 Ga0207687_10044353 Ga0207687_100443532 352
124 3300025927 Ga0207687_10181963 Ga0207687_101819632 352
125 3300025940 Ga0207691_10087796 Ga0207691_100877961 352
126 3300025949 Ga0207667_10044598 Ga0207667_100445985 352
127 3300027907 Ga0207428_10002458 Ga0207428_100024583 352
128 3300031911 Ga0307412_10027510 Ga0307412_100275102 352
129 3300035086 Ga0373934_0023220 Ga0373934_0023220_812_1876 352
130 3300035170 Ga0373943_0072466 Ga0373943_0072466_363_1424 352
131 3300035724 Ga0373933_0000142 Ga0373933_0000142_22453_23517 352
132 3300046535 Ga0495586_0013938 Ga0495586_0013938_3069_4130 352
133 3300047319 Ga0495674_0005728 Ga0495674_0005728_6943_8004 352
134 3300048903 Ga0496100_0015352 Ga0496100_0015352_3338_4399 352
135 3300048904 Ga0496101_0009709 Ga0496101_0009709_3562_4623 352
136 3300048910 Ga0496107_0027319 Ga0496107_0027319_1288_2349 352
137 3300048912 Ga0496109_0009981 Ga0496109_0009981_4685_5746 352
138 3300048917 Ga0496114_0001423 Ga0496114_0001423_12369_13430 352
139 3300048917 Ga0496114_0224860 Ga0496114_0224860_149_1213 352
140 3300048918 Ga0496115_0041653 Ga0496115_0041653_1027_2088 352
141 3300049575 Ga0501039_0192472 Ga0501039_0192472_368_1429 352
142 3300049579 Ga0501043_0036031 Ga0501043_0036031_2133_3194 352
143 3300049582 Ga0501048_0005903 Ga0501048_0005903_7834_8895 352
144 3300049583 Ga0501067_0006774 Ga0501067_0006774_830_1891 352
145 3300049589 Ga0501073_0020711 Ga0501073_0020711_3205_4266 352
146 3300049591 Ga0501075_0005680 Ga0501075_0005680_5325_6386 352
147 3300049743 Ga0501081_0311014 Ga0501081_0311014_63_1127 352
148 3300050507 nmdc:mga05p37_1202_c1 nmdc:mga05p37_1202_c1_27184_28245 352
149 3300050507 nmdc:mga05p37_4609_c1 nmdc:mga05p37_4609_c1_6809_7900 352
150 3300050510 nmdc:mga06r32_213797_c1 nmdc:mga06r32_213797_c1_494_1651 352
151 3300050511 nmdc:mga08y16_9755_c1 nmdc:mga08y16_9755_c1_5872_6933 352
152 3300005340 Ga0070689_100023678 Ga0070689_1000236782 353
153 3300005841 Ga0068863_100143468 Ga0068863_1001434682 353
154 3300005985 Ga0081539_10000069 Ga0081539_1000006926 353
155 3300006844 Ga0075428_100003790 Ga0075428_10000379015 353
156 3300006847 Ga0075431_100002557 Ga0075431_1000025572 353
157 3300006847 Ga0075431_100011081 Ga0075431_1000110815 353
158 3300006847 Ga0075431_100019105 Ga0075431_1000191052 353
159 3300006852 Ga0075433_10004939 Ga0075433_100049397 353
160 3300006871 Ga0075434_100050045 Ga0075434_1000500452 353
161 3300006880 Ga0075429_100008048 Ga0075429_1000080489 353
162 3300006914 Ga0075436_100026658 Ga0075436_1000266584 353
163 3300007076 Ga0075435_100047209 Ga0075435_1000472094 353
164 3300009147 Ga0114129_10002636 Ga0114129_100026364 353
165 3300009147 Ga0114129_10006769 Ga0114129_100067694 353
166 3300009147 Ga0114129_10016295 Ga0114129_100162952 353
167 3300009147 Ga0114129_10063093 Ga0114129_100630934 353
168 3300025936 Ga0207670_10013023 Ga0207670_100130233 353
169 3300026088 Ga0207641_10021820 Ga0207641_100218202 353
170 3300026116 Ga0207674_10190762 Ga0207674_101907622 353
171 3300031548 Ga0307408_100004821 Ga0307408_1000048218 353
172 3300031727 Ga0316576_10072017 Ga0316576_100720172 353
173 3300031733 Ga0316577_10054490 Ga0316577_100544902 353
174 3300032002 Ga0307416_100005515 Ga0307416_1000055157 353
175 3300032005 Ga0307411_10189675 Ga0307411_101896751 353
176 3300037418 Ga0395900_0154502 Ga0395900_0154502_255_1319 353
177 3300041999 Ga0439433_0016334 Ga0439433_0016334_57_1130 353
178 3300042007 Ga0439449_0002122 Ga0439449_0002122_1107_2180 353
179 3300042014 Ga0439457_008391 Ga0439457_008391_876_1949 353
180 3300042015 Ga0439462_0008574 Ga0439462_0008574_1431_2504 353
181 3300045051 Ga0451576_0001098 Ga0451576_0001098_42792_43865 353
182 3300045051 Ga0451576_0270171 Ga0451576_0270171_534_1607 353
183 3300049576 Ga0501040_0013439 Ga0501040_0013439_2806_3870 353
184 3300049582 Ga0501048_0028476 Ga0501048_0028476_2561_3625 353
185 3300049585 Ga0501069_0028215 Ga0501069_0028215_22_1086 353
186 3300049588 Ga0501072_0003970 Ga0501072_0003970_1572_2636 353
187 3300049591 Ga0501075_0009104 Ga0501075_0009104_4070_5134 353
188 3300049592 Ga0501076_0010744 Ga0501076_0010744_176_1240 353
189 3300049741 Ga0501079_0074216 Ga0501079_0074216_683_1747 353
190 3300049742 Ga0501080_0197903 Ga0501080_0197903_713_1777 353
191 3300049743 Ga0501081_0003471 Ga0501081_0003471_4167_5231 353
192 3300049824 Ga0501045_0012104 Ga0501045_0012104_866_1930 353
193 3300050507 nmdc:mga05p37_115184_c1 nmdc:mga05p37_115184_c1_1233_2297 353
194 3300050507 nmdc:mga05p37_16172_c1 nmdc:mga05p37_16172_c1_6654_7718 353
195 3300050507 nmdc:mga05p37_2039_c1 nmdc:mga05p37_2039_c1_19007_20071 353
196 3300050507 nmdc:mga05p37_535628_c1 nmdc:mga05p37_535628_c1_209_1273 353
197 3300050508 nmdc:mga09592_103254_c1 nmdc:mga09592_103254_c1_734_1798 353
198 3300050508 nmdc:mga09592_1841_c1 nmdc:mga09592_1841_c1_1031_2095 353
199 3300050508 nmdc:mga09592_361499_c1 nmdc:mga09592_361499_c1_22_1209 353
200 3300050510 nmdc:mga06r32_11791_c1 nmdc:mga06r32_11791_c1_2894_3958 353
201 3300050510 nmdc:mga06r32_97511_c1 nmdc:mga06r32_97511_c1_798_1862 353
202 3300050512 nmdc:mga0n895_62621_c1 nmdc:mga0n895_62621_c1_1315_2379 353
203 3300050512 nmdc:mga0n895_941_c1 nmdc:mga0n895_941_c1_18795_19859 353
204 3300050513 nmdc:mga0rr50_1073_c1 nmdc:mga0rr50_1073_c1_11766_12830 353
205 3300050514 nmdc:mga08x19_14609_c1 nmdc:mga08x19_14609_c1_2402_3466 353
206 3300050515 nmdc:mga0a205_172770_c1 nmdc:mga0a205_172770_c1_116_1180 353
207 3300050515 nmdc:mga0a205_40909_c1 nmdc:mga0a205_40909_c1_1296_2360 353
208 3300054114 Ga0501084_0012757 Ga0501084_0012757_12_1076 353
209 3300060353 Ga0501082_0034879 Ga0501082_0034879_545_1609 353
210 3300061734 Ga0530510_0093000 Ga0530510_0093000_321_1385 353
211 iso_pu_bacteria 2866065130 2866067973 353
212 3300005343 Ga0070687_100005833 Ga0070687_1000058332 354
213 3300005983 Ga0081540_1000030 Ga0081540_100003068 354
214 3300006847 Ga0075431_100017065 Ga0075431_1000170655 354
215 3300006914 Ga0075436_100133085 Ga0075436_1001330852 354
216 3300009094 Ga0111539_10177921 Ga0111539_101779211 354
217 3300009147 Ga0114129_10018756 Ga0114129_100187564 354
218 3300028573 Ga0265334_10013604 Ga0265334_100136042 354
219 3300028577 Ga0265318_10001664 Ga0265318_100016649 354
220 3300031235 Ga0265330_10003278 Ga0265330_100032782 354
221 3300031238 Ga0265332_10013111 Ga0265332_100131112 354
222 3300031239 Ga0265328_10000127 Ga0265328_100001272 354
223 3300031240 Ga0265320_10003862 Ga0265320_100038628 354
224 3300031242 Ga0265329_10001867 Ga0265329_100018676 354
225 3300031250 Ga0265331_10010093 Ga0265331_100100932 354
226 3300031344 Ga0265316_10011215 Ga0265316_100112154 354
227 3300031711 Ga0265314_10015303 Ga0265314_100153033 354
228 3300031712 Ga0265342_10003597 Ga0265342_100035972 354
229 3300031731 Ga0307405_10364872 Ga0307405_103648721 354
230 3300038742 Ga0400486_22416 Ga0400486_22416_479_1582 354
231 3300039453 Ga0436362_0694088 Ga0436362_0694088_906_1994 354
232 3300048927 Ga0496124_0099234 Ga0496124_0099234_475_1557 354
233 3300049592 Ga0501076_0159242 Ga0501076_0159242_432_1505 354
234 3300050510 nmdc:mga06r32_72997_c1 nmdc:mga06r32_72997_c1_2152_3222 354
235 3300037068 Ga0373925_0006028 Ga0373925_0006028_427_1506 355
236 3300049823 Ga0501044_0116805 Ga0501044_0116805_330_1424 357
237 3300039437 Ga0436365_1933910 Ga0436365_1933910_112_1191 358
238 3300048916 Ga0496113_0025253 Ga0496113_0025253_2052_3176 358
239 3300009177 Ga0105248_10036049 Ga0105248_100360495 360
240 3300021358 Ga0213873_10030476 Ga0213873_100304762 360
241 3300021384 Ga0213876_10064596 Ga0213876_100645962 360
242 3300021388 Ga0213875_10046780 Ga0213875_100467803 360
243 3300037853 Ga0436364_0442241 Ga0436364_0442241_6602_7687 360
244 3300039453 Ga0436362_0019025 Ga0436362_0019025_103_1194 360
245 3300009093 Ga0105240_10000027 Ga0105240_10000027163 361
246 3300025986 Ga0207658_10185088 Ga0207658_101850882 361
247 3300002987 JGI25159J45721_1000230 JGI25159J45721_100023026 362
248 3300053085 Ga0495619_0084838 Ga0495619_0084838_17_1216 362

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00793

DAHP_synth_1

DAHP synthetase I family

70

381

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
8e0t-assembly1.cif.gz_D dahp (3-deoxy-d-arabinoheptulosonate-7-phosphate) synthase complexed with dahp oxime in unbound:(bound)2:other conformations 0.9867 15 357
1gg1-assembly1.cif.gz_A crystal structure analysis of dahp synthase in complex with mn2+ and 2-phosphoglycolate 0.9862 15 356
5d09-assembly1.cif.gz_D neisseria meningitidis 3 deoxy-d-arabino-heptulosonate 7-phosphate synthase phe211ala variant 0.9857 23 357
8e0u-assembly1.cif.gz_C dahp (3-deoxy-d-arabinoheptulosonate-7-phosphate) synthase complexed with sulfate in unbound:(bound)2:other conformations 0.9849 15 356
5cz0-assembly1.cif.gz_C neisseria meningitidis 3 dexy-d-arabino-heptulosonate 7-phosphate synthase glu98ala variant 0.9848 23 357
ID Description Score Start End Superfamily
6aglB00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9707 18 352 3.20.20.70
1of6A00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9694 12 359 3.20.20.70
1of6A00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9613 12 359 3.20.20.70
6aglB00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9529 18 352 3.20.20.70
1ofpA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9425 14 359 3.20.20.70
ID Description Score Start End GO Terms
AF-A0A6H3EG34-F1-model_v4 deleted 1.001 153 255
AF-D6PKL5-F1-model_v4 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) 0.9986 116 217 GO:0003849
GO:0008652
GO:0009073
AF-A0A837AP79-F1-model_v4 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) (DAHP synthase) (Phospho-2-keto-3-deoxyheptonate aldolase) 0.9981 148 258 GO:0003849
GO:0005737
GO:0008652
GO:0009073
GO:0009423
AF-A0A6C9EG27-F1-model_v4 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) (DAHP synthase) (Phospho-2-keto-3-deoxyheptonate aldolase) 0.998 116 217 GO:0003849
GO:0005737
GO:0008652
GO:0009073
GO:0009423
AF-A0A526YH32-F1-model_v4 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) (DAHP synthase) (Phospho-2-keto-3-deoxyheptonate aldolase) 0.9979 127 215 GO:0003849
GO:0005737
GO:0008652
GO:0009073
GO:0009423

Feature Viewer

pLDDT pTM Quality
93.38 0.92 High
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Predicted Structure (AlphaFold2)

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