F360249

General Info

Members Datasets Scaffolds Average Seq Length
248 145 496 477

Family's Representative Sequence

Representative Sequence 3300049582|Ga0501048_0019828|Ga0501048_0019828_433_2067
Length 544
Sequence VATVVELFEETPWRWRIDPVGEMRVPGIVFALRELLPDMAGDRSLEQVANVAGLPGIVGASYAMPDVHWGYGFPIGGVAATDVEAGGVVSPGGVGFDISCGVRLLRTPLDRAELEPHRAALMDELGRLVPKGIGRGAVWEVGGEAELRRVLARGAVEAVDRGFGDPHDLVRCEDGGVLAGADPAAVSERALARGLHQVGSLGSGNHFLELQAVDRVVDGPAAAALGLREGQVCVMIHSGSRGLGHQICSDHVRRMESAMHRYGIRVADRQLACVPVRSPEGEAYLAAMAAAANYGRANRQLLGVAARRAFATAVGTHELDLVYDVSHNLAKLERHEVDGRSRLLCVHRKGATRALPPGHPDLPPDLAAIGQPVLVPGSMGTASHVLVGVPEGGAFHSTCHGAGRTMSRTAARRRVSGAALQRELEAAGIAVRAGSRRGLAEEAPFSYKDVDAVVATVERAGLARRVARLVPLGVVKGQTSTRTWHRTVSSWWATSRPERETALGTAPAGSTLAGSARDSVARRPPSPPARTRARTGTPSATSIA

Samples

Sample ID Description Type Environment
1 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
4 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
9 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
10 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
11 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
12 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
13 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
14 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
15 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
16 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
17 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
18 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
19 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
20 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
21 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
22 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
23 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
24 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
25 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
26 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
27 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
28 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
29 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
30 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
31 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
32 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
33 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
34 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
35 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
36 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
37 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
38 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
39 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
40 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
42 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
44 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
45 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
46 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
47 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
48 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
49 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
50 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
51 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
52 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
53 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
72 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
73 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
74 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
75 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
76 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
77 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
78 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
79 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
80 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
81 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
82 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
83 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
84 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
85 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
86 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
87 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
88 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
89 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
90 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
91 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
92 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
93 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
94 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
95 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
96 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
97 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
98 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
99 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
100 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
101 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
102 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
103 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
104 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
105 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
106 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
109 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
111 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
113 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
114 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
119 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
120 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
121 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
122 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
123 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
124 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
125 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
126 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
127 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
128 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
129 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
130 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
131 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
133 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
134 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
135 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
136 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
137 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
138 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
139 2515154088 Salinispora arenicola CNT800 Isolate Rhizosphere
140 2515154129 Salinispora pacifica CNS103 Isolate Rhizosphere
141 2515154202 Salinispora pacifica CNT084 Isolate Rhizosphere
142 2622736626 Micromonospora rhizosphaerae DSM 45431 Isolate Rhizosphere
143 2675903058 Actinopolymorpha cephalotaxi CPCC 202808 Isolate Rhizosphere
144 2858902515 Micromonospora sp. MW-13 Isolate Rhizosphere
145 2929219909 Micromonospora sp. R-75348 Hybrid assembly Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 96.77
Metatranscriptomes 0.4
Isolates 2.82

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.4
Rhizosphere 96.37
Stem 0
Stem Tuber 0
Unclassified 1.21

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501048_0019828 3300049582 Bacteria 4931
2 JGI25407J50210_10001280 3300003373 Bacteria 5637
3 Ga0070676_10020180 3300005328 Bacteria 3717
4 Ga0070666_10010549 3300005335 Bacteria 5780
5 Ga0070682_100088740 3300005337 Bacteria 2018
6 Ga0068868_100161709 3300005338 Bacteria 1849
7 Ga0070660_100121267 3300005339 Bacteria 2087
8 Ga0070691_10005587 3300005341 Bacteria 5722
9 Ga0070668_100045171 3300005347 Bacteria 3380
10 Ga0070669_100000032 3300005353 Bacteria 153549
11 Ga0070669_100069413 3300005353 Bacteria 2603
12 Ga0070713_100032813 3300005436 Bacteria 4151
13 Ga0070710_10024248 3300005437 Bacteria 3198
14 Ga0070711_100213296 3300005439 Bacteria 1496
15 Ga0070705_100020547 3300005440 Bacteria 3497
16 Ga0070700_100031279 3300005441 Bacteria 3187
17 Ga0070694_100018473 3300005444 Bacteria 4424
18 Ga0070663_100056719 3300005455 Bacteria 2808
19 Ga0070678_100221103 3300005456 Bacteria 1574
20 Ga0070681_10049662 3300005458 Bacteria 4189
21 Ga0068867_100159560 3300005459 Bacteria 1778
22 Ga0070685_10019101 3300005466 Bacteria 3695
23 Ga0070698_100048821 3300005471 Bacteria 4324
24 Ga0068853_100037585 3300005539 Bacteria 4119
25 Ga0070693_100020832 3300005547 Bacteria 3466
26 Ga0070665_100000545 3300005548 Bacteria 52826
27 Ga0070704_100007936 3300005549 Bacteria 6335
28 Ga0068855_100067876 3300005563 Bacteria 4152
29 Ga0070702_100006048 3300005615 Bacteria 5699
30 Ga0068852_100079911 3300005616 Bacteria 2898
31 Ga0068859_100243304 3300005617 Bacteria 1889
32 Ga0068861_100019623 3300005719 Bacteria 4829
33 Ga0068860_100052533 3300005843 Bacteria 3876
34 Ga0068862_100048732 3300005844 Bacteria 3617
35 Ga0081538_10000798 3300005981 Bacteria 34203
36 Ga0070717_10000178 3300006028 Bacteria 47630
37 Ga0070716_100014544 3300006173 Bacteria 4031
38 Ga0070712_100031547 3300006175 Bacteria 3571
39 Ga0075431_100000661 3300006847 Bacteria 29345
40 Ga0075434_100034864 3300006871 Bacteria 4973
41 Ga0097620_100243300 3300006931 Bacteria 1889
42 Ga0105245_10068575 3300009098 Bacteria 3214
43 Ga0114129_10028045 3300009147 Bacteria 7975
44 Ga0114129_10510072 3300009147 Bacteria 1569
45 Ga0105243_10020626 3300009148 Bacteria 4997
46 Ga0105249_10233236 3300009553 Bacteria 1816
47 Ga0105239_10039722 3300010375 Bacteria 5156
48 Ga0157378_10068285 3300013297 Bacteria 3187
49 Ga0157372_10070189 3300013307 Bacteria 3941
50 Ga0157380_10049846 3300014326 Bacteria 3305
51 Ga0157377_10018106 3300014745 Bacteria 3657
52 Ga0157376_10043102 3300014969 Bacteria 3702
53 Ga0163161_10028121 3300017792 Bacteria 3991
54 Ga0163161_10127630 3300017792 Bacteria 1916
55 Ga0213875_10000104 3300021388 Bacteria 96500
56 Ga0207692_10092770 3300025898 Bacteria 1641
57 Ga0207642_10018003 3300025899 Bacteria 2701
58 Ga0207688_10011680 3300025901 Bacteria 4776
59 Ga0207645_10027888 3300025907 Bacteria 3646
60 Ga0207645_10051653 3300025907 Bacteria 2627
61 Ga0207707_10023605 3300025912 Bacteria 5379
62 Ga0207693_10014548 3300025915 Bacteria 6323
63 Ga0207657_10115292 3300025919 Bacteria 2214
64 Ga0207681_10000052 3300025923 Bacteria 112273
65 Ga0207706_10020146 3300025933 Bacteria 5993
66 Ga0207665_10012813 3300025939 Bacteria 5512
67 Ga0207665_10082054 3300025939 Bacteria 2221
68 Ga0207668_10080094 3300025972 Bacteria 2365
69 Ga0207639_10138971 3300026041 Bacteria 2021
70 Ga0207708_10024415 3300026075 Bacteria 4573
71 Ga0207648_10040667 3300026089 Bacteria 4085
72 Ga0207675_100027002 3300026118 Bacteria 5345
73 Ga0207675_100053731 3300026118 Bacteria 3758
74 Ga0207683_10039140 3300026121 Bacteria 4136
75 Ga0268266_10004004 3300028379 Bacteria 14255
76 Ga0268265_10060105 3300028380 Bacteria 2911
77 Ga0265318_10014050 3300028577 Archaea 3365
78 Ga0316575_10005642 3300031665 Bacteria 4465
79 Ga0316575_10006109 3300031665 Bacteria 4322
80 Ga0316575_10018198 3300031665 Bacteria 2676
81 Ga0316579_10001199 3300031691 Bacteria 9291
82 Ga0316579_10007302 3300031691 Bacteria 4558
83 Ga0316579_10021888 3300031691 Unclassified 2854
84 Ga0316576_10006151 3300031727 Bacteria 7439
85 Ga0316576_10006600 3300031727 Bacteria 7242
86 Ga0316576_10011177 3300031727 Bacteria 5868
87 Ga0316576_10029893 3300031727 Bacteria 3854
88 Ga0316578_10004361 3300031728 Bacteria 6668
89 Ga0316578_10011682 3300031728 Bacteria 4606
90 Ga0316578_10016223 3300031728 Bacteria 4026
91 Ga0316578_10017030 3300031728 Bacteria 3946
92 Ga0316578_10024231 3300031728 Bacteria 3403
93 Ga0316578_10025059 3300031728 Bacteria 3350
94 Ga0316578_10071182 3300031728 Bacteria 2059
95 Ga0316577_10001579 3300031733 Bacteria 10829
96 Ga0316577_10004011 3300031733 Bacteria 7538
97 Ga0316577_10008929 3300031733 Bacteria 5383
98 Ga0316577_10012864 3300031733 Bacteria 4566
99 Ga0316577_10017618 3300031733 Bacteria 3945
100 Ga0307409_100070659 3300031995 Bacteria 2772
101 Ga0316583_10007215 3300032133 Bacteria 3998
102 Ga0316585_10000509 3300032137 Bacteria 9269
103 Ga0316596_1004810 3300033541 Bacteria 3052
104 Ga0373929_0000051 3300035085 Bacteria 23837
105 Ga0316574_0000098 3300035398 Bacteria 25222
106 Ga0316574_0000102 3300035398 Bacteria 24862
107 Ga0316574_0001202 3300035398 Bacteria 12013
108 Ga0316574_0016167 3300035398 Bacteria 4342
109 Ga0316574_0020004 3300035398 Bacteria 3957
110 Ga0316574_0030248 3300035398 Bacteria 3278
111 Ga0316574_0063405 3300035398 Bacteria 2324
112 Ga0316582_0001973 3300036647 Bacteria 9395
113 Ga0316582_0025861 3300036647 Bacteria 3529
114 Ga0316582_0032426 3300036647 Bacteria 3201
115 Ga0316582_0034357 3300036647 Archaea 3123
116 Ga0316582_0100668 3300036647 Bacteria 1913
117 Ga0316584_0001827 3300036712 Bacteria 13158
118 Ga0316584_0002873 3300036712 Bacteria 11045
119 Ga0316584_0015813 3300036712 Bacteria 5403
120 Ga0316584_0016434 3300036712 Bacteria 5304
121 Ga0316584_0032147 3300036712 Bacteria 3882
122 Ga0316584_0043792 3300036712 Bacteria 3338
123 Ga0316581_0002643 3300037588 Bacteria 4329
124 Ga0316581_0028009 3300037588 Unclassified 1687
125 Ga0436364_0365971 3300037853 Bacteria 84277
126 Ga0400484_22118 3300038725 Bacteria 5434
127 Ga0400490_27503 3300038726 Bacteria 4475
128 Ga0400490_58474 3300038726 Bacteria 13201
129 Ga0400489_71072 3300039093 Bacteria 15387
130 Ga0436365_0207332 3300039437 Bacteria 2037
131 Ga0451577_0013157 3300042876 Bacteria 7754
132 Ga0466972_0065785 3300044658 Bacteria 1734
133 Ga0466966_0025384 3300044684 Bacteria 3871
134 Ga0453684_0001422 3300044712 Bacteria 68864
135 Ga0453684_0002130 3300044712 Bacteria 49722
136 Ga0453684_0078703 3300044712 Bacteria 4124
137 Ga0453684_0434433 3300044712 Bacteria 1464
138 Ga0466968_0000167 3300044735 Bacteria 19994
139 Ga0451576_0352453 3300045051 Bacteria 1541
140 Ga0466967_0000055 3300045976 Bacteria 40434
141 Ga0495590_0042043 3300046457 Bacteria 1593
142 Ga0495631_0042882 3300046518 Bacteria 1998
143 Ga0495644_0006873 3300046523 Bacteria 4404
144 Ga0495656_0045045 3300046615 Bacteria 1860
145 Ga0495660_0030412 3300046810 Bacteria 3042
146 Ga0495636_0000429 3300047318 Bacteria 15575
147 Ga0495677_0017862 3300047445 Bacteria 2571
148 Ga0496102_0083933 3300048905 Bacteria 2939
149 Ga0501031_0006359 3300049568 Bacteria 7705
150 Ga0501032_0015746 3300049569 Archaea 5332
151 Ga0501033_0025283 3300049570 Archaea 4473
152 Ga0501033_0098267 3300049570 Bacteria 2138
153 Ga0501034_0004927 3300049571 Bacteria 14705
154 Ga0501034_0014981 3300049571 Bacteria 7976
155 Ga0501036_0002547 3300049572 Bacteria 14331
156 Ga0501036_0021072 3300049572 Bacteria 5475
157 Ga0501036_0056461 3300049572 Bacteria 3327
158 Ga0501036_0107056 3300049572 Bacteria 2364
159 Ga0501038_0002875 3300049574 Bacteria 16054
160 Ga0501038_0011890 3300049574 Bacteria 7944
161 Ga0501038_0139094 3300049574 Bacteria 1988
162 Ga0501038_0200343 3300049574 Bacteria 1602
163 Ga0501039_0005453 3300049575 Bacteria 9620
164 Ga0501039_0070703 3300049575 Bacteria 2711
165 Ga0501039_0170638 3300049575 Bacteria 1710
166 Ga0501040_0007489 3300049576 Bacteria 7065
167 Ga0501040_0008456 3300049576 Bacteria 6686
168 Ga0501040_0011598 3300049576 Archaea 5768
169 Ga0501040_0047767 3300049576 Bacteria 2923
170 Ga0501041_0017431 3300049577 Bacteria 4274
171 Ga0501041_0022677 3300049577 Bacteria 3760
172 Ga0501041_0059450 3300049577 Bacteria 2339
173 Ga0501042_0003525 3300049578 Bacteria 9835
174 Ga0501042_0006854 3300049578 Bacteria 7433
175 Ga0501042_0013683 3300049578 Bacteria 5525
176 Ga0501042_0103607 3300049578 Bacteria 2047
177 Ga0501043_0013288 3300049579 Bacteria 6439
178 Ga0501043_0030341 3300049579 Bacteria 4249
179 Ga0501046_0002378 3300049580 Bacteria 17678
180 Ga0501046_0049658 3300049580 Bacteria 3318
181 Ga0501046_0059076 3300049580 Bacteria 3005
182 Ga0501048_0006342 3300049582 Bacteria 8995
183 Ga0501068_0001077 3300049584 Bacteria 14436
184 Ga0501068_0023701 3300049584 Bacteria 3599
185 Ga0501069_0012993 3300049585 Archaea 4436
186 Ga0501070_0192930 3300049586 Bacteria 1674
187 Ga0501071_0002160 3300049587 Bacteria 11805
188 Ga0501071_0021467 3300049587 Bacteria 4496
189 Ga0501071_0027165 3300049587 Bacteria 4024
190 Ga0501071_0090745 3300049587 Bacteria 2244
191 Ga0501071_0101858 3300049587 Bacteria 2117
192 Ga0501071_0107873 3300049587 Bacteria 2056
193 Ga0501072_0007588 3300049588 Bacteria 8228
194 Ga0501072_0068799 3300049588 Bacteria 2794
195 Ga0501072_0081715 3300049588 Bacteria 2561
196 Ga0501072_0158693 3300049588 Bacteria 1804
197 Ga0501074_0000847 3300049590 Bacteria 19455
198 Ga0501074_0005919 3300049590 Bacteria 8817
199 Ga0501074_0008370 3300049590 Bacteria 7498
200 Ga0501074_0057863 3300049590 Bacteria 2793
201 Ga0501075_0004614 3300049591 Bacteria 9350
202 Ga0501075_0005904 3300049591 Bacteria 8374
203 Ga0501075_0008875 3300049591 Bacteria 7010
204 Ga0501075_0077478 3300049591 Bacteria 2515
205 Ga0501076_0020543 3300049592 Bacteria 5055
206 Ga0501076_0021101 3300049592 Bacteria 4992
207 Ga0501076_0058226 3300049592 Archaea 3070
208 Ga0501076_0163237 3300049592 Bacteria 1815
209 Ga0501077_0001812 3300049593 Bacteria 12906
210 Ga0501077_0014137 3300049593 Bacteria 5009
211 Ga0501079_0013303 3300049741 Bacteria 6273
212 Ga0501079_0020519 3300049741 Bacteria 5053
213 Ga0501080_0003537 3300049742 Bacteria 13765
214 Ga0501081_0010325 3300049743 Bacteria 6095
215 Ga0501081_0013796 3300049743 Bacteria 5317
216 Ga0501081_0026919 3300049743 Bacteria 3880
217 Ga0501081_0125959 3300049743 Bacteria 1827
218 Ga0501083_0038815 3300049744 Archaea 3236
219 Ga0501035_0013639 3300049822 Archaea 7498
220 Ga0501045_0002327 3300049824 Bacteria 12887
221 Ga0501045_0005267 3300049824 Bacteria 8952
222 Ga0501045_0010948 3300049824 Bacteria 6353
223 Ga0501045_0041918 3300049824 Bacteria 3331
224 nmdc:mga06r32_2406_c1 3300050510 Unclassified 16749
225 nmdc:mga08x19_95068_c1 3300050514 Bacteria 1971
226 Ga0495655_0020209 3300053083 Bacteria 1490
227 Ga0501084_0000620 3300054114 Bacteria 27044
228 Ga0501084_0002848 3300054114 Bacteria 13975
229 Ga0501084_0008750 3300054114 Bacteria 8372
230 Ga0501084_0009172 3300054114 Bacteria 8184
231 Ga0501084_0066454 3300054114 Bacteria 3017
232 Ga0501084_0157526 3300054114 Bacteria 1915
233 Ga0501082_0021014 3300060353 Archaea 5630
234 Ga0501082_0023920 3300060353 Bacteria 5268
235 Ga0501082_0035912 3300060353 Bacteria 4271
236 Ga0501082_0120770 3300060353 Bacteria 2271
237 Ga0501082_0155578 3300060353 Bacteria 1986
238 Ga0501082_0185039 3300060353 Bacteria 1812
239 Ga0530510_0049838 3300061734 Bacteria 3024
240 Ga0530510_0063668 3300061734 Bacteria 2670
241 Ga0530510_0118632 3300061734 Bacteria 1941
242 2515497239 2515154088 Bacteria 5526283
243 2515723195 2515154129 Bacteria 5584369
244 2516085197 2515154202 Bacteria 5471270
245 2623589436 2622736626 Bacteria 7181580
246 2676474172 2675903058 Bacteria 6822861
247 2858907083 2858902515 Bacteria 7086037
248 2929222901 2929219909 Bacteria 6984360
249 Ga0501048_0019828
250 JGI25407J50210_10001280
251 Ga0070676_10020180
252 Ga0070666_10010549
253 Ga0070682_100088740
254 Ga0068868_100161709
255 Ga0070660_100121267
256 Ga0070691_10005587
257 Ga0070668_100045171
258 Ga0070669_100000032
259 Ga0070669_100069413
260 Ga0070713_100032813
261 Ga0070710_10024248
262 Ga0070711_100213296
263 Ga0070705_100020547
264 Ga0070700_100031279
265 Ga0070694_100018473
266 Ga0070663_100056719
267 Ga0070678_100221103
268 Ga0070681_10049662
269 Ga0068867_100159560
270 Ga0070685_10019101
271 Ga0070698_100048821
272 Ga0068853_100037585
273 Ga0070693_100020832
274 Ga0070665_100000545
275 Ga0070704_100007936
276 Ga0068855_100067876
277 Ga0070702_100006048
278 Ga0068852_100079911
279 Ga0068859_100243304
280 Ga0068861_100019623
281 Ga0068860_100052533
282 Ga0068862_100048732
283 Ga0081538_10000798
284 Ga0070717_10000178
285 Ga0070716_100014544
286 Ga0070712_100031547
287 Ga0075431_100000661
288 Ga0075434_100034864
289 Ga0097620_100243300
290 Ga0105245_10068575
291 Ga0114129_10028045
292 Ga0114129_10510072
293 Ga0105243_10020626
294 Ga0105249_10233236
295 Ga0105239_10039722
296 Ga0157378_10068285
297 Ga0157372_10070189
298 Ga0157380_10049846
299 Ga0157377_10018106
300 Ga0157376_10043102
301 Ga0163161_10028121
302 Ga0163161_10127630
303 Ga0213875_10000104
304 Ga0207692_10092770
305 Ga0207642_10018003
306 Ga0207688_10011680
307 Ga0207645_10027888
308 Ga0207645_10051653
309 Ga0207707_10023605
310 Ga0207693_10014548
311 Ga0207657_10115292
312 Ga0207681_10000052
313 Ga0207706_10020146
314 Ga0207665_10012813
315 Ga0207665_10082054
316 Ga0207668_10080094
317 Ga0207639_10138971
318 Ga0207708_10024415
319 Ga0207648_10040667
320 Ga0207675_100027002
321 Ga0207675_100053731
322 Ga0207683_10039140
323 Ga0268266_10004004
324 Ga0268265_10060105
325 Ga0265318_10014050
326 Ga0316575_10005642
327 Ga0316575_10006109
328 Ga0316575_10018198
329 Ga0316579_10001199
330 Ga0316579_10007302
331 Ga0316579_10021888
332 Ga0316576_10006151
333 Ga0316576_10006600
334 Ga0316576_10011177
335 Ga0316576_10029893
336 Ga0316578_10004361
337 Ga0316578_10011682
338 Ga0316578_10016223
339 Ga0316578_10017030
340 Ga0316578_10024231
341 Ga0316578_10025059
342 Ga0316578_10071182
343 Ga0316577_10001579
344 Ga0316577_10004011
345 Ga0316577_10008929
346 Ga0316577_10012864
347 Ga0316577_10017618
348 Ga0307409_100070659
349 Ga0316583_10007215
350 Ga0316585_10000509
351 Ga0316596_1004810
352 Ga0373929_0000051
353 Ga0316574_0000098
354 Ga0316574_0000102
355 Ga0316574_0001202
356 Ga0316574_0016167
357 Ga0316574_0020004
358 Ga0316574_0030248
359 Ga0316574_0063405
360 Ga0316582_0001973
361 Ga0316582_0025861
362 Ga0316582_0032426
363 Ga0316582_0034357
364 Ga0316582_0100668
365 Ga0316584_0001827
366 Ga0316584_0002873
367 Ga0316584_0015813
368 Ga0316584_0016434
369 Ga0316584_0032147
370 Ga0316584_0043792
371 Ga0316581_0002643
372 Ga0316581_0028009
373 Ga0436364_0365971
374 Ga0400484_22118
375 Ga0400490_27503
376 Ga0400490_58474
377 Ga0400489_71072
378 Ga0436365_0207332
379 Ga0451577_0013157
380 Ga0466972_0065785
381 Ga0466966_0025384
382 Ga0453684_0001422
383 Ga0453684_0002130
384 Ga0453684_0078703
385 Ga0453684_0434433
386 Ga0466968_0000167
387 Ga0451576_0352453
388 Ga0466967_0000055
389 Ga0495590_0042043
390 Ga0495631_0042882
391 Ga0495644_0006873
392 Ga0495656_0045045
393 Ga0495660_0030412
394 Ga0495636_0000429
395 Ga0495677_0017862
396 Ga0496102_0083933
397 Ga0501031_0006359
398 Ga0501032_0015746
399 Ga0501033_0025283
400 Ga0501033_0098267
401 Ga0501034_0004927
402 Ga0501034_0014981
403 Ga0501036_0002547
404 Ga0501036_0021072
405 Ga0501036_0056461
406 Ga0501036_0107056
407 Ga0501038_0002875
408 Ga0501038_0011890
409 Ga0501038_0139094
410 Ga0501038_0200343
411 Ga0501039_0005453
412 Ga0501039_0070703
413 Ga0501039_0170638
414 Ga0501040_0007489
415 Ga0501040_0008456
416 Ga0501040_0011598
417 Ga0501040_0047767
418 Ga0501041_0017431
419 Ga0501041_0022677
420 Ga0501041_0059450
421 Ga0501042_0003525
422 Ga0501042_0006854
423 Ga0501042_0013683
424 Ga0501042_0103607
425 Ga0501043_0013288
426 Ga0501043_0030341
427 Ga0501046_0002378
428 Ga0501046_0049658
429 Ga0501046_0059076
430 Ga0501048_0006342
431 Ga0501068_0001077
432 Ga0501068_0023701
433 Ga0501069_0012993
434 Ga0501070_0192930
435 Ga0501071_0002160
436 Ga0501071_0021467
437 Ga0501071_0027165
438 Ga0501071_0090745
439 Ga0501071_0101858
440 Ga0501071_0107873
441 Ga0501072_0007588
442 Ga0501072_0068799
443 Ga0501072_0081715
444 Ga0501072_0158693
445 Ga0501074_0000847
446 Ga0501074_0005919
447 Ga0501074_0008370
448 Ga0501074_0057863
449 Ga0501075_0004614
450 Ga0501075_0005904
451 Ga0501075_0008875
452 Ga0501075_0077478
453 Ga0501076_0020543
454 Ga0501076_0021101
455 Ga0501076_0058226
456 Ga0501076_0163237
457 Ga0501077_0001812
458 Ga0501077_0014137
459 Ga0501079_0013303
460 Ga0501079_0020519
461 Ga0501080_0003537
462 Ga0501081_0010325
463 Ga0501081_0013796
464 Ga0501081_0026919
465 Ga0501081_0125959
466 Ga0501083_0038815
467 Ga0501035_0013639
468 Ga0501045_0002327
469 Ga0501045_0005267
470 Ga0501045_0010948
471 Ga0501045_0041918
472 nmdc:mga06r32_2406_c1
473 nmdc:mga08x19_95068_c1
474 Ga0495655_0020209
475 Ga0501084_0000620
476 Ga0501084_0002848
477 Ga0501084_0008750
478 Ga0501084_0009172
479 Ga0501084_0066454
480 Ga0501084_0157526
481 Ga0501082_0021014
482 Ga0501082_0023920
483 Ga0501082_0035912
484 Ga0501082_0120770
485 Ga0501082_0155578
486 Ga0501082_0185039
487 Ga0530510_0049838
488 Ga0530510_0063668
489 Ga0530510_0118632
490 2515497239
491 2515723195
492 2516085197
493 2623589436
494 2676474172
495 2858907083
496 2929222901

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01139

RtcB

tRNA-splicing ligase RtcB

47

477

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
4dwr-assembly3.cif.gz_C rna ligase rtcb/mn2+ complex 0.9744 8 478
8dcb-assembly2.cif.gz_B rna ligase rtcb from pyrococcus horikoshii in complex with ni2+ and gtp 0.972 1 478
8dcb-assembly2.cif.gz_B rna ligase rtcb from pyrococcus horikoshii in complex with ni2+ and gtp 0.97 1 478
7p3b-assembly2.cif.gz_B human rna ligase rtcb in complex with gmp and co(ii) 0.9686 5 478
7p3b-assembly2.cif.gz_B human rna ligase rtcb in complex with gmp and co(ii) 0.9586 5 478
ID Description Score Start End Superfamily
1uc2A00 Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB 0.975 8 478 3.90.1860.10
af_Q58095_565_968_3.90.1860.10 Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB 0.9741 101 478 3.90.1860.10
af_Q99LF4_9_505_3.90.1860.10 Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB 0.9704 5 478 3.90.1860.10
af_Q99LF4_9_505_3.90.1860.10 Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB 0.9604 5 478 3.90.1860.10
1uc2A00 Alpha Beta;Alpha-Beta Complex;tRNA-splicing ligase RtcB;tRNA-splicing ligase RtcB 0.9589 8 478 3.90.1860.10
ID Description Score Start End GO Terms
AF-A0A1Y2NUI9-F1-model_v4 tRNA-splicing ligase RtcB (EC 6.5.1.-) 0.9963 8 478 GO:0003972
GO:0005525
GO:0006396
GO:0042245
GO:0046872
GO:0170057
AF-A0A7X1HWW6-F1-model_v4 tRNA-splicing ligase RtcB (EC 6.5.1.-) 0.9955 8 478 GO:0003972
GO:0005525
GO:0006396
GO:0042245
GO:0046872
AF-A0A1Q5LDN7-F1-model_v4 tRNA-splicing ligase RtcB (EC 6.5.1.-) 0.9955 8 478 GO:0003972
GO:0005525
GO:0006396
GO:0042245
GO:0046872
GO:0170057
AF-A0A2W4NGW5-F1-model_v4 deleted 0.9946 8 478
AF-A0A497E1U0-F1-model_v4 3'-phosphate/5'-hydroxy nucleic acid ligase (EC 6.5.1.8) 0.994 8 101 GO:0003972
GO:0005525
GO:0006396
GO:0042245
GO:0046872
GO:0170057

Map