F360171

General Info

Members Datasets Scaffolds Average Seq Length
248 154 228 235

Family's Representative Sequence

Representative Sequence 3300046542|Ga0495597_0101749|Ga0495597_0101749_367_1131
Length 254
Sequence MRRNLCCAFGNGLKYCLVKIIMSTIVQNLQAVKAAIEAAATAAGRPPTAVQLLAVSKTFPPEAVLEALSAGQRAFGENYLQEGLDKIEAVAALAPDSAVEWHFIGPIQSNKTRPIASSFSWVHTVERFKIAQRLAEQRPAGLAPLNICLQVNVSGEASKSGVAPEELPELAQQVITLPNLRLRGLMAIPALHTDVAKQRASFALLRQLADKLRDGGIEIDTLSMGMSGDMEAAVMEGATIVRIGSAIFGARYYE

Samples

Sample ID Description Type Environment
1 2511231007 Pseudomonas sp. GM18 Isolate Nodule
2 2515154123 Trinickia symbiotica JPY347 Isolate Nodule
3 2643221554 Duganella sp. Root1480D1 Isolate Unclassified
4 2643221639 Pelomonas sp. Root1217 Isolate Unclassified
5 2643221664 Massilia sp. Root418 Isolate Unclassified
6 2738541280 Massilia sp. GV090 Isolate Unclassified
7 2738541300 Massilia sp. GV016 Isolate Unclassified
8 2738541337 Pelomonas sp. BT06 Isolate Unclassified
9 2818991436 Collimonas arenae 515 Isolate Unclassified
10 2821131069 Duganella sp. 1224 Isolate Unclassified
11 2842711865 Duganella sp. R-73148 Isolate Unclassified
12 2857553236 Duganella sp. R-74557 Isolate Unclassified
13 2857558681 Duganella sp. R-74565 Isolate Unclassified
14 2857564685 Duganella sp. R-74599 Isolate Unclassified
15 2919476304 Duganella sp. 3397 Isolate Unclassified
16 2919493220 Aeromonas salmonicida salmonicida 3466 Isolate Unclassified
17 2919543075 Aeromonas salmonicida masoucida 4076 Isolate Unclassified
18 2923525760 Aeromonas caviae SLBN-129 Isolate Rhizosphere
19 3007718800 Pseudomonas fluorescens BW11P2 Isolate Rhizosphere
20 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
21 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
22 3300002771 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mLB Metagenome Endosphere
23 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
24 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
25 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
26 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
27 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
28 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
29 3300003751 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 Metagenome Endosphere
30 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
31 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
32 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
33 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
34 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
35 3300003841 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 Metagenome Endosphere
36 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
37 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
38 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
39 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
40 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
41 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
42 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
43 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
44 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
45 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
46 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
47 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
48 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
49 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
50 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
51 3300025224 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
56 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
57 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
58 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
60 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
61 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
62 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
63 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
64 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
65 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
66 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
68 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
72 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
73 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
74 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
75 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
76 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
77 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
78 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
79 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
80 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
81 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
82 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
83 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
84 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
85 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
86 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
87 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
88 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
89 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
90 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
91 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
92 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
93 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
94 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
95 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
96 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
97 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
98 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
99 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
100 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
101 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
102 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
103 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
104 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
105 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
106 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
107 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
108 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
109 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
110 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
111 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
112 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
113 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
114 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
115 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
116 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
117 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
118 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
119 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
120 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
121 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
122 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
123 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
124 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
125 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
126 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
127 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
128 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
129 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
130 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
131 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
132 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
133 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
134 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
135 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
136 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
137 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
138 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
139 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
140 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
141 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
142 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
143 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
144 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
145 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
146 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
147 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
148 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
149 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
150 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
151 3300053141 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 endosphere Metagenome Endosphere
152 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere
153 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
154 8056137416 Pseudomonas fakonensis COW40 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.94
Metatranscriptomes 0
Isolates 8.06

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 20.16
Nodule 2.42
Rhizoplane 1.21
Rhizosphere 63.71
Stem 0
Stem Tuber 0
Unclassified 12.5

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25162J39368_1000032 3300002737 Bacteria 195871
2 JGI25154J39366_1001021 3300002738 Bacteria 11254
3 JGI25163J39215_1002823 3300002771 Bacteria 1592
4 JGI25159J45721_1011469 3300002987 Bacteria 2170
5 JGI25151J46595_10003485 3300003187 Bacteria 8681
6 JGI25151J46595_10042272 3300003187 Bacteria 1644
7 JGI25165J46597_1000067 3300003214 Bacteria 196411
8 JGI25153J46596_10022647 3300003215 Bacteria 2309
9 rootL2_10106735 3300003322 Bacteria 1535
10 JGI25161J50226_1000553 3300003374 Bacteria 15942
11 Ga0055538_1000033 3300003751 Bacteria 195914
12 Ga0055539_1000045 3300003752 Bacteria 195316
13 Ga0055533_1000054 3300003756 Bacteria 195914
14 Ga0055525_1000065 3300003759 Bacteria 195779
15 Ga0055526_1000026 3300003771 Bacteria 154116
16 Ga0055526_1000135 3300003771 Bacteria 65528
17 Ga0055524_1002399 3300003775 Bacteria 9718
18 Ga0055541_1000031 3300003841 Bacteria 195914
19 Ga0055543_1000552 3300004625 Bacteria 21020
20 Ga0065165_1001910 3300005262 Bacteria 19933
21 Ga0065165_1020649 3300005262 Bacteria 2312
22 Ga0070717_10162852 3300006028 Bacteria 1936
23 Ga0079104_1004004 3300006946 Bacteria 6538
24 Ga0099826_10000006 3300006948 Bacteria 432260
25 Ga0105244_10001745 3300009036 Bacteria 17085
26 Ga0105240_10000853 3300009093 Bacteria 54964
27 Ga0105243_10711330 3300009148 Bacteria 980
28 Ga0157371_10000077 3300013102 Bacteria 157429
29 Ga0157371_10002624 3300013102 Bacteria 17067
30 Ga0157376_10116693 3300014969 Bacteria 2359
31 Ga0182006_1000150 3300015261 Bacteria 74692
32 Ga0182006_1013026 3300015261 Bacteria 3623
33 Ga0182007_10006881 3300015262 Bacteria 4833
34 Ga0182007_10024361 3300015262 Bacteria 2118
35 Ga0182005_1000052 3300015265 Bacteria 113532
36 Ga0182005_1000118 3300015265 Bacteria 57357
37 Ga0213872_10000137 3300021361 Bacteria 66117
38 Ga0213872_10007649 3300021361 Bacteria 5295
39 Ga0213872_10008830 3300021361 Bacteria 4861
40 Ga0213872_10025735 3300021361 Bacteria 2704
41 Ga0213872_10139104 3300021361 Bacteria 1066
42 Ga0209436_100125 3300025208 Bacteria 37810
43 Ga0209784_100048 3300025224 Bacteria 198885
44 Ga0209566_100060 3300025225 Bacteria 198885
45 Ga0209674_100082 3300025226 Bacteria 198885
46 Ga0209563_100082 3300025230 Bacteria 198750
47 Ga0209437_100125 3300025233 Bacteria 198146
48 Ga0207425_1000212 3300025245 Bacteria 46073
49 Ga0209646_1000148 3300025246 Bacteria 101083
50 Ga0209677_100046 3300025253 Bacteria 198287
51 Ga0209233_1000138 3300025261 Bacteria 198287
52 Ga0209565_1003401 3300025263 Bacteria 5170
53 Ga0209565_1008196 3300025263 Bacteria 2754
54 Ga0209130_1005649 3300025284 Bacteria 4279
55 Ga0209675_1004982 3300025291 Bacteria 5715
56 Ga0209025_1015521 3300025294 Bacteria 4583
57 Ga0209564_1000028 3300025295 Bacteria 510986
58 Ga0209564_1000088 3300025295 Bacteria 250268
59 Ga0209564_1000493 3300025295 Bacteria 65593
60 Ga0209564_1019804 3300025295 Bacteria 2497
61 Ga0209758_1000278 3300025297 Bacteria 102052
62 Ga0209050_1002012 3300025298 Bacteria 18950
63 Ga0209050_1006731 3300025298 Bacteria 6713
64 Ga0209256_1000035 3300025299 Bacteria 386754
65 Ga0209256_1002811 3300025299 Bacteria 13319
66 Ga0209257_1016901 3300025304 Bacteria 2911
67 Ga0207655_1004417 3300025728 Bacteria 9979
68 Ga0207695_10000794 3300025913 Bacteria 59342
69 Ga0209281_1003099 3300027111 Bacteria 5801
70 Ga0209282_1000003 3300027666 Bacteria 856377
71 Ga0307515_10292611 3300028794 Bacteria 1322
72 Ga0307408_100014388 3300031548 Bacteria 5255
73 Ga0265314_10067826 3300031711 Bacteria 2400
74 Ga0395905_0000589 3300037471 Bacteria 48792
75 Ga0400484_38466 3300038725 Bacteria 3427
76 Ga0400483_125872 3300039062 Bacteria 4025
77 Ga0400483_219863 3300039062 Bacteria 173210
78 Ga0436361_0841223 3300039447 Bacteria 1625
79 Ga0436361_0852784 3300039447 Bacteria 4994
80 Ga0436361_0900144 3300039447 Bacteria 143515
81 Ga0436361_0937550 3300039447 Bacteria 4069
82 Ga0466969_0018961 3300044656 Bacteria 3580
83 Ga0466961_0006862 3300044693 Bacteria 7243
84 Ga0466970_0052859 3300044765 Bacteria 2169
85 Ga0466959_0134449 3300045049 Bacteria 1751
86 Ga0495617_001434 3300046452 Bacteria 10474
87 Ga0495617_072510 3300046452 Bacteria 1132
88 Ga0495627_000006 3300046453 Bacteria 581750
89 Ga0495592_0014020 3300046454 Bacteria 6089
90 Ga0495590_0000022 3300046457 Bacteria 205122
91 Ga0495638_0000229 3300046460 Bacteria 76824
92 Ga0495638_0012641 3300046460 Bacteria 5776
93 Ga0495651_0001004 3300046462 Bacteria 21915
94 Ga0495651_0053747 3300046462 Bacteria 3099
95 Ga0495653_0040427 3300046463 Bacteria 3644
96 Ga0495650_0000146 3300046471 Bacteria 163598
97 Ga0495650_0000359 3300046471 Bacteria 80406
98 Ga0495650_0000481 3300046471 Bacteria 61012
99 Ga0495650_0006145 3300046471 Bacteria 7554
100 Ga0495650_0007246 3300046471 Bacteria 6718
101 Ga0495605_0000041 3300046474 Bacteria 193873
102 Ga0495605_0002786 3300046474 Bacteria 10643
103 Ga0495605_0013123 3300046474 Bacteria 4577
104 Ga0495639_0033868 3300046475 Bacteria 2283
105 Ga0495585_0001350 3300046492 Bacteria 19448
106 Ga0495585_0297287 3300046492 Bacteria 794
107 Ga0495607_0029883 3300046501 Bacteria 3352
108 Ga0495607_0058040 3300046501 Bacteria 2215
109 Ga0495607_0196236 3300046501 Bacteria 1002
110 Ga0495583_0000063 3300046506 Bacteria 194362
111 Ga0495583_0000486 3300046506 Bacteria 57980
112 Ga0495606_0000004 3300046507 Bacteria 406209
113 Ga0495606_0000127 3300046507 Bacteria 129676
114 Ga0495606_0001258 3300046507 Bacteria 35384
115 Ga0495606_0003695 3300046507 Bacteria 15998
116 Ga0495606_0004194 3300046507 Bacteria 14595
117 Ga0495606_0005100 3300046507 Bacteria 12762
118 Ga0495606_0008748 3300046507 Bacteria 8703
119 Ga0495606_0067721 3300046507 Bacteria 2260
120 Ga0495608_0017155 3300046511 Bacteria 5012
121 Ga0495610_0001271 3300046512 Bacteria 22594
122 Ga0495610_0009236 3300046512 Bacteria 6254
123 Ga0495610_0010341 3300046512 Bacteria 5809
124 Ga0495618_0015706 3300046514 Bacteria 4621
125 Ga0495628_0000646 3300046516 Bacteria 31897
126 Ga0495628_0009948 3300046516 Bacteria 8095
127 Ga0495628_0025247 3300046516 Bacteria 4855
128 Ga0495637_0001034 3300046520 Bacteria 17431
129 Ga0495643_0000450 3300046522 Bacteria 52786
130 Ga0495643_0000761 3300046522 Bacteria 36194
131 Ga0495644_0013949 3300046523 Bacteria 3080
132 Ga0495648_0000004 3300046524 Bacteria 373639
133 Ga0495648_0004582 3300046524 Bacteria 11777
134 Ga0495648_0041824 3300046524 Bacteria 2890
135 Ga0495648_0185382 3300046524 Bacteria 1054
136 Ga0495642_0034615 3300046528 Bacteria 2035
137 Ga0495642_0122691 3300046528 Bacteria 1115
138 Ga0495652_0007251 3300046529 Bacteria 10235
139 Ga0495652_0062770 3300046529 Bacteria 3131
140 Ga0495652_0099554 3300046529 Bacteria 2360
141 Ga0495654_0000025 3300046530 Bacteria 236572
142 Ga0495654_0007240 3300046530 Bacteria 6218
143 Ga0495654_0043523 3300046530 Bacteria 2225
144 Ga0495609_0000900 3300046538 Bacteria 21694
145 Ga0495609_0006643 3300046538 Bacteria 5870
146 Ga0495609_0021149 3300046538 Bacteria 3001
147 Ga0495609_0144846 3300046538 Bacteria 1012
148 Ga0495597_0000373 3300046542 Bacteria 39413
149 Ga0495597_0001526 3300046542 Bacteria 16464
150 Ga0495597_0101749 3300046542 Bacteria 1211
151 Ga0495645_0089804 3300046543 Bacteria 2197
152 Ga0495622_0000092 3300046557 Bacteria 80637
153 Ga0495622_0000583 3300046557 Bacteria 21619
154 Ga0495622_0071945 3300046557 Bacteria 1595
155 Ga0495633_0000068 3300046558 Bacteria 136733
156 Ga0495633_0000094 3300046558 Bacteria 120459
157 Ga0495633_0016962 3300046558 Bacteria 3736
158 Ga0495633_0041457 3300046558 Bacteria 2189
159 Ga0495633_0057735 3300046558 Bacteria 1822
160 Ga0495668_0001045 3300046616 Bacteria 29353
161 Ga0495668_0002333 3300046616 Bacteria 15806
162 Ga0495668_0003650 3300046616 Bacteria 11373
163 Ga0495611_0016611 3300046648 Bacteria 3145
164 Ga0495625_0002769 3300046660 Bacteria 18512
165 Ga0495625_0008353 3300046660 Bacteria 8840
166 Ga0495625_0053628 3300046660 Bacteria 2882
167 Ga0495625_0077301 3300046660 Bacteria 2326
168 Ga0495659_0002713 3300046664 Bacteria 5695
169 Ga0495659_0003948 3300046664 Bacteria 4697
170 Ga0495659_0154825 3300046664 Bacteria 922
171 Ga0495657_0053727 3300046675 Bacteria 2694
172 Ga0495599_0001268 3300046678 Bacteria 14344
173 Ga0495623_0032692 3300046679 Bacteria 3342
174 Ga0495623_0040266 3300046679 Bacteria 2984
175 Ga0495646_0006253 3300046680 Bacteria 7550
176 Ga0495646_0061317 3300046680 Bacteria 2240
177 Ga0495624_0035327 3300046690 Bacteria 3227
178 Ga0495670_0070935 3300046691 Bacteria 1763
179 Ga0495671_0004339 3300046692 Bacteria 8515
180 Ga0495671_0145535 3300046692 Bacteria 1154
181 Ga0495649_0005057 3300046694 Bacteria 8473
182 Ga0495649_0090392 3300046694 Bacteria 1632
183 Ga0495649_0127457 3300046694 Bacteria 1344
184 Ga0495649_0259152 3300046694 Bacteria 892
185 Ga0495600_0022612 3300046809 Bacteria 4038
186 Ga0495660_0000383 3300046810 Bacteria 38501
187 Ga0495660_0000991 3300046810 Bacteria 20707
188 Ga0495660_0154514 3300046810 Bacteria 1130
189 Ga0495604_0012399 3300047317 Bacteria 6777
190 Ga0495636_0000349 3300047318 Bacteria 17607
191 Ga0495672_0000328 3300047320 Bacteria 62377
192 Ga0495672_0000713 3300047320 Bacteria 36575
193 Ga0495672_0023947 3300047320 Bacteria 3941
194 Ga0495676_0186110 3300047321 Bacteria 1452
195 Ga0495683_0006176 3300047323 Bacteria 6565
196 Ga0495687_001201 3300047443 Bacteria 24818
197 Ga0495687_005478 3300047443 Bacteria 8067
198 Ga0495677_0110459 3300047445 Bacteria 1045
199 Ga0495677_0118417 3300047445 Bacteria 1009
200 Ga0495673_0000031 3300047469 Bacteria 447868
201 Ga0495673_0000074 3300047469 Bacteria 210788
202 Ga0495673_0007167 3300047469 Bacteria 6451
203 Ga0495686_0006794 3300047472 Bacteria 8684
204 Ga0495602_0058885 3300048088 Bacteria 3358
205 Ga0496103_0006742 3300048906 Bacteria 6855
206 Ga0496110_0268627 3300048913 Bacteria 1553
207 Ga0496114_0210209 3300048917 Bacteria 1706
208 Ga0496116_0031600 3300048919 Bacteria 3787
209 Ga0496121_0331621 3300048924 Bacteria 1020
210 Ga0496124_0172254 3300048927 Bacteria 1674
211 Ga0496124_0178384 3300048927 Bacteria 1637
212 Ga0496124_0202760 3300048927 Bacteria 1507
213 Ga0496126_0003829 3300048929 Bacteria 18629
214 Ga0496126_0023275 3300048929 Bacteria 6004
215 Ga0496126_0048391 3300048929 Bacteria 3886
216 Ga0496126_0219122 3300048929 Bacteria 1599
217 Ga0495678_000013 3300049459 Bacteria 316375
218 Ga0495678_000937 3300049459 Bacteria 25350
219 Ga0495678_011268 3300049459 Bacteria 4291
220 Ga0495682_0038506 3300049460 Bacteria 1757
221 Ga0495601_0014599 3300053077 Bacteria 4734
222 Ga0500594_0026811 3300053118 Bacteria 1487
223 Ga0500595_001577 3300053119 Bacteria 12033
224 Ga0500618_000166 3300053125 Bacteria 55289
225 Ga0500618_001620 3300053125 Bacteria 9743
226 Ga0500574_001043 3300053141 Bacteria 3900
227 Ga0500586_003328 3300053145 Bacteria 3788
228 Ga0500619_003444 3300053154 Bacteria 3242

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 3007718800 3007720577 191
2 3300046538 Ga0495609_0021149 Ga0495609_0021149_856_1551 201
3 3300021361 Ga0213872_10025735 Ga0213872_100257353 205
4 3300046524 Ga0495648_0185382 Ga0495648_0185382_425_1042 205
5 3300046557 Ga0495622_0000092 Ga0495622_0000092_71921_72538 205
6 3300046664 Ga0495659_0154825 Ga0495659_0154825_200_817 205
7 3300021361 Ga0213872_10007649 Ga0213872_100076494 208
8 3300046528 Ga0495642_0122691 Ga0495642_0122691_106_759 208
9 3300003322 rootL2_10106735 rootL2_101067352 210
10 3300046516 Ga0495628_0009948 Ga0495628_0009948_7408_8055 213
11 3300048929 Ga0496126_0048391 Ga0496126_0048391_2108_2809 213
12 3300046507 Ga0495606_0067721 Ga0495606_0067721_649_1347 214
13 3300046512 Ga0495610_0010341 Ga0495610_0010341_243_947 214
14 3300046522 Ga0495643_0000761 Ga0495643_0000761_23000_23740 215
15 3300046542 Ga0495597_0000373 Ga0495597_0000373_7643_8383 215
16 3300047443 Ga0495687_005478 Ga0495687_005478_418_1125 215
17 3300006946 Ga0079104_1004004 Ga0079104_10040043 216
18 3300027111 Ga0209281_1003099 Ga0209281_10030995 216
19 3300046660 Ga0495625_0077301 Ga0495625_0077301_1218_1961 216
20 3300015261 Ga0182006_1000150 Ga0182006_100015040 217
21 3300015265 Ga0182005_1000052 Ga0182005_100005279 217
22 3300046457 Ga0495590_0000022 Ga0495590_0000022_21613_22353 217
23 3300046460 Ga0495638_0000229 Ga0495638_0000229_1161_1901 217
24 3300046471 Ga0495650_0007246 Ga0495650_0007246_576_1316 217
25 3300046475 Ga0495639_0033868 Ga0495639_0033868_1384_2124 217
26 3300046501 Ga0495607_0196236 Ga0495607_0196236_92_796 217
27 3300046506 Ga0495583_0000486 Ga0495583_0000486_46750_47490 217
28 3300046524 Ga0495648_0000004 Ga0495648_0000004_182229_182969 217
29 3300046557 Ga0495622_0000583 Ga0495622_0000583_9875_10615 217
30 3300046558 Ga0495633_0000068 Ga0495633_0000068_46909_47649 217
31 3300046616 Ga0495668_0002333 Ga0495668_0002333_1120_1860 217
32 3300046660 Ga0495625_0008353 Ga0495625_0008353_7310_8050 217
33 3300046810 Ga0495660_0154514 Ga0495660_0154514_257_997 217
34 3300047445 Ga0495677_0110459 Ga0495677_0110459_243_983 217
35 3300049459 Ga0495678_011268 Ga0495678_011268_1365_2105 217
36 3300002738 JGI25154J39366_1001021 JGI25154J39366_10010213 218
37 3300025246 Ga0209646_1000148 Ga0209646_100014829 218
38 3300046471 Ga0495650_0006145 Ga0495650_0006145_487_1224 218
39 3300046520 Ga0495637_0001034 Ga0495637_0001034_1153_1857 218
40 3300046530 Ga0495654_0000025 Ga0495654_0000025_162717_163421 218
41 3300003771 Ga0055526_1000135 Ga0055526_100013526 219
42 3300025295 Ga0209564_1000493 Ga0209564_100049343 219
43 3300039062 Ga0400483_219863 Ga0400483_219863_55505_56185 219
44 iso_pu_bacteria 2738541337 2739058340 220
45 3300046492 Ga0495585_0001350 Ga0495585_0001350_16076_16777 221
46 3300046691 Ga0495670_0070935 Ga0495670_0070935_829_1530 221
47 iso_pu_bacteria 2643221639 2644222393 221
48 3300025304 Ga0209257_1016901 Ga0209257_10169012 222
49 3300009093 Ga0105240_10000853 Ga0105240_100008538 223
50 3300025913 Ga0207695_10000794 Ga0207695_1000079438 223
51 iso_pu_bacteria 2857553236 2857556548 225
52 3300003187 JGI25151J46595_10003485 JGI25151J46595_100034857 226
53 3300014969 Ga0157376_10116693 Ga0157376_101166932 226
54 3300038725 Ga0400484_38466 Ga0400484_38466_1500_2192 226
55 3300039062 Ga0400483_125872 Ga0400483_125872_1063_1755 226
56 3300048929 Ga0496126_0219122 Ga0496126_0219122_236_925 226
57 3300046538 Ga0495609_0000900 Ga0495609_0000900_2289_2981 227
58 3300046810 Ga0495660_0000991 Ga0495660_0000991_13727_14419 227
59 3300049459 Ga0495678_000013 Ga0495678_000013_155847_156539 227
60 iso_pu_bacteria 2511231007 2511272523 227
61 iso_pu_bacteria 2515154123 2515690459 227
62 iso_pu_bacteria 2842711865 2842713188 227
63 iso_pu_bacteria 2857558681 2857561918 227
64 iso_pu_bacteria 8056137416 8056142687 227
65 3300046454 Ga0495592_0014020 Ga0495592_0014020_5012_5758 228
66 3300046462 Ga0495651_0053747 Ga0495651_0053747_1744_2490 228
67 3300046463 Ga0495653_0040427 Ga0495653_0040427_1094_1840 228
68 3300046514 Ga0495618_0015706 Ga0495618_0015706_878_1624 228
69 3300046516 Ga0495628_0025247 Ga0495628_0025247_561_1307 228
70 3300046529 Ga0495652_0099554 Ga0495652_0099554_155_901 228
71 3300046557 Ga0495622_0071945 Ga0495622_0071945_133_879 228
72 3300046675 Ga0495657_0053727 Ga0495657_0053727_1730_2476 228
73 3300046678 Ga0495599_0001268 Ga0495599_0001268_7671_8417 228
74 3300046680 Ga0495646_0061317 Ga0495646_0061317_35_781 228
75 3300046690 Ga0495624_0035327 Ga0495624_0035327_1215_1961 228
76 3300046809 Ga0495600_0022612 Ga0495600_0022612_1457_2203 228
77 3300047317 Ga0495604_0012399 Ga0495604_0012399_711_1457 228
78 3300048088 Ga0495602_0058885 Ga0495602_0058885_194_940 228
79 3300053077 Ga0495601_0014599 Ga0495601_0014599_3400_4146 228
80 3300053119 Ga0500595_001577 Ga0500595_001577_10417_11163 228
81 3300053141 Ga0500574_001043 Ga0500574_001043_629_1375 228
82 3300053154 Ga0500619_003444 Ga0500619_003444_1737_2483 228
83 iso_pu_bacteria 2919493220 2919497472 228
84 iso_pu_bacteria 2919543075 2919545278 228
85 iso_pu_bacteria 2923525760 2923526977 228
86 3300006028 Ga0070717_10162852 Ga0070717_101628522 229
87 3300013102 Ga0157371_10002624 Ga0157371_1000262412 229
88 3300028794 Ga0307515_10292611 Ga0307515_102926112 229
89 3300046452 Ga0495617_001434 Ga0495617_001434_238_942 229
90 3300046452 Ga0495617_072510 Ga0495617_072510_226_930 229
91 3300046474 Ga0495605_0013123 Ga0495605_0013123_2786_3484 229
92 3300046507 Ga0495606_0000127 Ga0495606_0000127_24710_25408 229
93 3300046507 Ga0495606_0003695 Ga0495606_0003695_10581_11285 229
94 3300046512 Ga0495610_0009236 Ga0495610_0009236_651_1430 229
95 3300046522 Ga0495643_0000450 Ga0495643_0000450_39238_40017 229
96 3300046524 Ga0495648_0041824 Ga0495648_0041824_1873_2571 229
97 3300046542 Ga0495597_0001526 Ga0495597_0001526_1190_1888 229
98 3300046558 Ga0495633_0000094 Ga0495633_0000094_41840_42586 229
99 3300046558 Ga0495633_0016962 Ga0495633_0016962_2555_3253 229
100 3300046660 Ga0495625_0053628 Ga0495625_0053628_252_950 229
101 3300046692 Ga0495671_0145535 Ga0495671_0145535_120_818 229
102 3300046694 Ga0495649_0005057 Ga0495649_0005057_372_1151 229
103 3300046694 Ga0495649_0090392 Ga0495649_0090392_803_1501 229
104 3300047320 Ga0495672_0000713 Ga0495672_0000713_12699_13478 229
105 3300047445 Ga0495677_0118417 Ga0495677_0118417_154_933 229
106 3300047469 Ga0495673_0000074 Ga0495673_0000074_30211_30978 229
107 3300048906 Ga0496103_0006742 Ga0496103_0006742_1143_1874 229
108 3300048917 Ga0496114_0210209 Ga0496114_0210209_709_1440 229
109 3300049459 Ga0495678_000937 Ga0495678_000937_1093_1872 229
110 3300049460 Ga0495682_0038506 Ga0495682_0038506_750_1448 229
111 3300053118 Ga0500594_0026811 Ga0500594_0026811_496_1194 229
112 3300053145 Ga0500586_003328 Ga0500586_003328_588_1292 229
113 iso_pu_bacteria 2821131069 2821136264 229
114 iso_pu_bacteria 2857564685 2857569382 229
115 iso_pu_bacteria 2919476304 2919480696 229
116 3300009036 Ga0105244_10001745 Ga0105244_1000174512 230
117 3300013102 Ga0157371_10000077 Ga0157371_1000007775 230
118 3300021361 Ga0213872_10000137 Ga0213872_1000013756 230
119 3300021361 Ga0213872_10008830 Ga0213872_100088304 230
120 3300021361 Ga0213872_10139104 Ga0213872_101391042 230
121 3300025728 Ga0207655_1004417 Ga0207655_10044172 230
122 3300031711 Ga0265314_10067826 Ga0265314_100678262 230
123 3300039447 Ga0436361_0841223 Ga0436361_0841223_622_1323 230
124 3300039447 Ga0436361_0852784 Ga0436361_0852784_1318_2019 230
125 3300039447 Ga0436361_0900144 Ga0436361_0900144_16853_17554 230
126 3300046453 Ga0495627_000006 Ga0495627_000006_416666_417367 230
127 3300046471 Ga0495650_0000146 Ga0495650_0000146_48058_48759 230
128 3300046507 Ga0495606_0004194 Ga0495606_0004194_8713_9414 230
129 3300046528 Ga0495642_0034615 Ga0495642_0034615_426_1127 230
130 3300046542 Ga0495597_0101749 Ga0495597_0101749_367_1131 230
131 3300046558 Ga0495633_0041457 Ga0495633_0041457_986_1720 230
132 3300046694 Ga0495649_0127457 Ga0495649_0127457_129_830 230
133 3300048927 Ga0496124_0172254 Ga0496124_0172254_187_888 230
134 3300048929 Ga0496126_0023275 Ga0496126_0023275_2886_3587 230
135 iso_pu_bacteria 2643221554 2643789873 230
136 3300003187 JGI25151J46595_10042272 JGI25151J46595_100422722 231
137 3300003215 JGI25153J46596_10022647 JGI25153J46596_100226472 231
138 3300003771 Ga0055526_1000026 Ga0055526_100002678 231
139 3300025245 Ga0207425_1000212 Ga0207425_10002128 231
140 3300025294 Ga0209025_1015521 Ga0209025_10155213 231
141 3300025295 Ga0209564_1000028 Ga0209564_1000028297 231
142 3300025297 Ga0209758_1000278 Ga0209758_100027871 231
143 3300037471 Ga0395905_0000589 Ga0395905_0000589_47263_47967 231
144 3300044656 Ga0466969_0018961 Ga0466969_0018961_215_919 231
145 3300044693 Ga0466961_0006862 Ga0466961_0006862_3281_3985 231
146 3300044765 Ga0466970_0052859 Ga0466970_0052859_375_1079 231
147 3300045049 Ga0466959_0134449 Ga0466959_0134449_117_821 231
148 3300046471 Ga0495650_0000481 Ga0495650_0000481_46116_46877 231
149 3300046474 Ga0495605_0000041 Ga0495605_0000041_177890_178627 231
150 3300046501 Ga0495607_0029883 Ga0495607_0029883_959_1720 231
151 3300046507 Ga0495606_0000004 Ga0495606_0000004_51395_52156 231
152 3300046507 Ga0495606_0001258 Ga0495606_0001258_30959_31663 231
153 3300046507 Ga0495606_0005100 Ga0495606_0005100_10880_11620 231
154 3300046512 Ga0495610_0001271 Ga0495610_0001271_18565_19326 231
155 3300046558 Ga0495633_0057735 Ga0495633_0057735_644_1405 231
156 3300046616 Ga0495668_0001045 Ga0495668_0001045_15790_16551 231
157 3300046616 Ga0495668_0003650 Ga0495668_0003650_9929_10690 231
158 3300046694 Ga0495649_0259152 Ga0495649_0259152_80_841 231
159 3300046810 Ga0495660_0000383 Ga0495660_0000383_22775_23524 231
160 3300047469 Ga0495673_0000031 Ga0495673_0000031_74308_75012 231
161 3300047472 Ga0495686_0006794 Ga0495686_0006794_7088_7849 231
162 3300048913 Ga0496110_0268627 Ga0496110_0268627_36_740 231
163 3300048919 Ga0496116_0031600 Ga0496116_0031600_2499_3203 231
164 3300048924 Ga0496121_0331621 Ga0496121_0331621_242_946 231
165 3300048927 Ga0496124_0178384 Ga0496124_0178384_482_1243 231
166 3300048927 Ga0496124_0202760 Ga0496124_0202760_269_973 231
167 3300048929 Ga0496126_0003829 Ga0496126_0003829_15277_15981 231
168 3300053125 Ga0500618_000166 Ga0500618_000166_23281_23991 231
169 iso_pu_bacteria 2643221664 2644358430 231
170 3300002987 JGI25159J45721_1011469 JGI25159J45721_10114692 232
171 3300003374 JGI25161J50226_1000553 JGI25161J50226_10005532 232
172 3300003775 Ga0055524_1002399 Ga0055524_10023992 232
173 3300004625 Ga0055543_1000552 Ga0055543_100055221 232
174 3300005262 Ga0065165_1001910 Ga0065165_100191021 232
175 3300005262 Ga0065165_1020649 Ga0065165_10206492 232
176 3300006948 Ga0099826_10000006 Ga0099826_10000006253 232
177 3300025208 Ga0209436_100125 Ga0209436_10012521 232
178 3300025263 Ga0209565_1003401 Ga0209565_10034013 232
179 3300025263 Ga0209565_1008196 Ga0209565_10081962 232
180 3300025284 Ga0209130_1005649 Ga0209130_10056492 232
181 3300025291 Ga0209675_1004982 Ga0209675_10049824 232
182 3300025295 Ga0209564_1000088 Ga0209564_1000088119 232
183 3300025295 Ga0209564_1019804 Ga0209564_10198042 232
184 3300025298 Ga0209050_1002012 Ga0209050_10020121 232
185 3300025298 Ga0209050_1006731 Ga0209050_10067315 232
186 3300025299 Ga0209256_1000035 Ga0209256_1000035157 232
187 3300025299 Ga0209256_1002811 Ga0209256_10028112 232
188 3300027666 Ga0209282_1000003 Ga0209282_1000003122 232
189 3300031548 Ga0307408_100014388 Ga0307408_1000143883 232
190 3300046501 Ga0495607_0058040 Ga0495607_0058040_1113_1820 232
191 3300009148 Ga0105243_10711330 Ga0105243_107113302 233
192 3300039447 Ga0436361_0937550 Ga0436361_0937550_913_1623 233
193 3300046471 Ga0495650_0000359 Ga0495650_0000359_15143_15853 233
194 3300046507 Ga0495606_0008748 Ga0495606_0008748_7000_7710 233
195 3300046660 Ga0495625_0002769 Ga0495625_0002769_15841_16551 233
196 iso_pu_bacteria 2738541280 2738739366 233
197 iso_pu_bacteria 2738541300 2738846661 233
198 3300046530 Ga0495654_0007240 Ga0495654_0007240_3798_4511 234
199 3300046460 Ga0495638_0012641 Ga0495638_0012641_2841_3557 235
200 3300046474 Ga0495605_0002786 Ga0495605_0002786_9114_9830 235
201 3300046492 Ga0495585_0297287 Ga0495585_0297287_51_767 235
202 3300046506 Ga0495583_0000063 Ga0495583_0000063_146580_147296 235
203 3300046523 Ga0495644_0013949 Ga0495644_0013949_517_1233 235
204 3300046524 Ga0495648_0004582 Ga0495648_0004582_1410_2126 235
205 3300046530 Ga0495654_0043523 Ga0495654_0043523_659_1381 235
206 3300046538 Ga0495609_0006643 Ga0495609_0006643_1630_2346 235
207 3300046538 Ga0495609_0144846 Ga0495609_0144846_56_772 235
208 3300046648 Ga0495611_0016611 Ga0495611_0016611_1848_2564 235
209 3300046664 Ga0495659_0002713 Ga0495659_0002713_849_1571 235
210 3300046664 Ga0495659_0003948 Ga0495659_0003948_457_1173 235
211 3300046692 Ga0495671_0004339 Ga0495671_0004339_6647_7369 235
212 3300047318 Ga0495636_0000349 Ga0495636_0000349_6697_7413 235
213 3300047320 Ga0495672_0000328 Ga0495672_0000328_23935_24657 235
214 3300047320 Ga0495672_0023947 Ga0495672_0023947_3199_3915 235
215 3300047323 Ga0495683_0006176 Ga0495683_0006176_3567_4283 235
216 3300047443 Ga0495687_001201 Ga0495687_001201_16087_16803 235
217 3300047469 Ga0495673_0007167 Ga0495673_0007167_1995_2711 235
218 3300053125 Ga0500618_001620 Ga0500618_001620_3364_4080 235
219 3300015262 Ga0182007_10024361 Ga0182007_100243612 240
220 3300046462 Ga0495651_0001004 Ga0495651_0001004_732_1460 240
221 3300046511 Ga0495608_0017155 Ga0495608_0017155_3701_4429 240
222 3300046516 Ga0495628_0000646 Ga0495628_0000646_1289_2017 240
223 3300046529 Ga0495652_0007251 Ga0495652_0007251_794_1522 240
224 3300046529 Ga0495652_0062770 Ga0495652_0062770_1215_1952 240
225 3300046679 Ga0495623_0040266 Ga0495623_0040266_1576_2304 240
226 3300046680 Ga0495646_0006253 Ga0495646_0006253_6413_7141 240
227 iso_pu_bacteria 2818991436 2819544693 240
228 3300002737 JGI25162J39368_1000032 JGI25162J39368_100003251 244
229 3300002771 JGI25163J39215_1002823 JGI25163J39215_10028231 244
230 3300003214 JGI25165J46597_1000067 JGI25165J46597_100006751 244
231 3300003751 Ga0055538_1000033 Ga0055538_100003351 244
232 3300003752 Ga0055539_1000045 Ga0055539_100004550 244
233 3300003756 Ga0055533_1000054 Ga0055533_100005451 244
234 3300003759 Ga0055525_1000065 Ga0055525_100006551 244
235 3300003841 Ga0055541_1000031 Ga0055541_100003151 244
236 3300015261 Ga0182006_1013026 Ga0182006_10130263 244
237 3300015262 Ga0182007_10006881 Ga0182007_100068812 244
238 3300015265 Ga0182005_1000118 Ga0182005_10001187 244
239 3300025224 Ga0209784_100048 Ga0209784_10004850 244
240 3300025225 Ga0209566_100060 Ga0209566_10006050 244
241 3300025226 Ga0209674_100082 Ga0209674_10008250 244
242 3300025230 Ga0209563_100082 Ga0209563_10008250 244
243 3300025233 Ga0209437_100125 Ga0209437_10012549 244
244 3300025253 Ga0209677_100046 Ga0209677_10004649 244
245 3300025261 Ga0209233_1000138 Ga0209233_100013849 244
246 3300046543 Ga0495645_0089804 Ga0495645_0089804_676_1410 244
247 3300046679 Ga0495623_0032692 Ga0495623_0032692_771_1505 244
248 3300047321 Ga0495676_0186110 Ga0495676_0186110_349_1083 244

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01168

Ala_racemase_N

Alanine racemase, N-terminal domain

27

252

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
1w8g-assembly1.cif.gz_A crystal structure of e. coli k-12 yggs 0.9472 2 237
7ub8-assembly2.cif.gz_B the crystal structure of the k38a/k137a/k233a/k234a quadruple mutant of e. coli yggs in complex with plp 0.9431 1 236
7uat-assembly1.cif.gz_A the crystal structure of the k36a mutant of e. coli yggs in complex with plp 0.9409 1 237
7ubp-assembly1.cif.gz_A the crystal structure of the k36a/k137a double mutant of e. coli yggs in complex with plp 0.9408 2 237
7uax-assembly1.cif.gz_A the crystal structure of the k36a/k38a double mutant of e. coli yggs in complex with plp 0.9408 1 236
ID Description Score Start End Superfamily
1w8gA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9472 2 237 3.20.20.10
1w8gA00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9349 2 237 3.20.20.10
5nm8B00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9304 2 236 3.20.20.10
5nm8B00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9178 2 236 3.20.20.10
3r79B00 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Alanine racemase 0.9038 2 237 3.20.20.10
ID Description Score Start End GO Terms
AF-A0A485HY45-F1-model_v4 deleted 0.9885 2 193
AF-A0A4Q6F811-F1-model_v4 deleted 0.9831 2 226
AF-A0A519HM92-F1-model_v4 Pyridoxal phosphate homeostasis protein (PLP homeostasis protein) 0.9806 2 238 GO:0030170
AF-A0A848G6Q1-F1-model_v4 Pyridoxal phosphate homeostasis protein (PLP homeostasis protein) 0.9804 2 238 GO:0030170
AF-A0A1Y1QU51-F1-model_v4 Pyridoxal phosphate homeostasis protein (PLP homeostasis protein) 0.9798 2 238 GO:0030170

Feature Viewer

pLDDT pTM Quality
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Predicted Structure (AlphaFold2)

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