F357808

General Info

Members Datasets Scaffolds Average Seq Length
245 211 120 321

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|3005587118|3005591488
Length 385
Sequence RWWSSYRLLAVLAIISRAFSRDLTVDPIREKQQNRFRLSRSRSLDARKLVSVGYEDMRFKGLDLNLLVALDALMTERNLTAAARKINLSQPAMSAAVARLRTYFRDELFAMKGRELVPTSRAEELAAPVREAMMHIELSIIARTAFDPAQSKRCFRIGLSDFTTIVLFRSVVERAAREAPAVSFELVPPTQHDELLRRGEVDFVILPEFFLSNAHPRAALFEERLVCVGCCTNNELLRRLTFDRYMSMGHVAVNLGGTRKRPVDESFLLDFGLNRRIEVLVQSFSMIPPLLLGTNRIGTMPLRLAKHYQNTMPLRIAELPQLFPAFTEAVQWPVLHDSDPESLWMREILLQEATRMATAQEPSMIRSLEPADAANVFARSGSPSS

Samples

Sample ID Description Type Environment
1 2508501128 Bradyrhizobium sp. ARR65 Isolate Nodule
2 2512047030 Paraburkholderia tuberum STM678 Isolate Nodule
3 2513237088 Rhizobium mesoamericanum STM6155 Isolate Nodule
4 2513237092 Bradyrhizobium sp. WSM1743 Isolate Nodule
5 2513237095 Bradyrhizobium diazoefficiens USDA 122 Isolate Nodule
6 2513237096 Bradyrhizobium pachyrhizi USDA 3259 Isolate Nodule
7 2513237137 Bradyrhizobium elkanii USDA 94 Isolate Nodule
8 2513237139 Bradyrhizobium ottawaense USDA 4 Isolate Nodule
9 2513237140 Sinorhizobium meliloti GVPV12 Isolate Nodule
10 2513237145 Bradyrhizobium elkanii USDA 3254 Isolate Nodule
11 2513237161 Bradyrhizobium sp. WSM2793 Isolate Nodule
12 2513237166 Paraburkholderia azotifigens UYPR1.413 Isolate Nodule
13 2513237305 Mesorhizobium amorphae CCNWGS0123 Isolate Nodule
14 2515154107 Sinorhizobium meliloti 4H41 Isolate Nodule
15 2515154122 Paraburkholderia atlantica JPY251 Isolate Nodule
16 2517093001 Bradyrhizobium japonicum USDA 124 Isolate Nodule
17 2517572143 Bradyrhizobium elkanii USDA 76 Isolate Nodule
18 2524023209 Rhizobium leucaenae USDA 9039 Isolate Nodule
19 2524023210 Bradyrhizobium sp. Ai1a-2 Isolate Nodule
20 2524023228 Bradyrhizobium sp. Th.b2 Isolate Nodule
21 2528768022 Bradyrhizobium japonicum USDA 123 Isolate Nodule
22 2534681796 Rhizobium grahamii CCGE 502 Isolate Nodule
23 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
24 2615840626 Rhizobium lusitanum P1-7 Isolate Nodule
25 2617270735 Bradyrhizobium shewense ERR11 Isolate Nodule
26 2617270741 Bradyrhizobium yuanmingense CCBAU 10071 Isolate Nodule
27 2718217991 Paraburkholderia sprentiae WSM5005 Isolate Nodule
28 2721755686 Mesorhizobium amorphae CCNWGS0123 Isolate Nodule
29 2738541275 Novosphingobium sp. GV027 Isolate Unclassified
30 2738541301 Novosphingobium sp. GV079 Isolate Unclassified
31 2738541304 Novosphingobium sp. GV061 Isolate Unclassified
32 2738543022 Novosphingobium sp. GV055 Isolate Unclassified
33 2738543033 Novosphingobium sp. GV064 Isolate Unclassified
34 2775507266 Rhizobium tropici PRF 81 Isolate Nodule
35 2791355091 Sinorhizobium sp. FG01 Isolate Nodule
36 2791355092 Sinorhizobium sp. NG07B Isolate Nodule
37 2791355197 Bradyrhizobium sp. C9 Isolate Nodule
38 2802429603 Bradyrhizobium ottawaense L2 Isolate Nodule
39 2816332527 Bradyrhizobium diazoefficiens Y21 Isolate Nodule
40 2824600985 Bradyrhizobium sp.HAMBI 2135 Isolate Unclassified
41 2824609381 Bradyrhizobium sp. HAMBI 2134 Isolate Unclassified
42 2824617872 Bradyrhizobium sp. HAMBI 2133 Isolate Unclassified
43 2824626560 Bradyrhizobium sp. HAMBI 2149 Isolate Unclassified
44 2824635225 Bradyrhizobium sp. HAMBI 2136 Isolate Unclassified
45 2824644064 Bradyrhizobium sp. HAMBI 2137 Isolate Unclassified
46 2824653114 Bradyrhizobium sp. HAMBI 2142 Isolate Unclassified
47 2824661429 Bradyrhizobium sp. HAMBI 2115 Isolate Unclassified
48 2824671348 Bradyrhizobium sp. HAMBI 2125 Isolate Unclassified
49 2824679649 Bradyrhizobium sp.HAMBI 2116 Isolate Unclassified
50 2824687955 Bradyrhizobium sp. HAMBI 2126 Isolate Unclassified
51 2824696289 Bradyrhizobium sp. HAMBI 2127 Isolate Unclassified
52 2824704595 Bradyrhizobium sp. HAMBI 2150 Isolate Unclassified
53 2824714736 Bradyrhizobium sp. HAMBI 2151 Isolate Unclassified
54 2824723954 Bradyrhizobium sp. HAMBI 2152 Isolate Unclassified
55 2824732956 Bradyrhizobium sp. HAMBI 2153 Isolate Unclassified
56 2824746037 Bradyrhizobium sp. HAMBI 2299 Isolate Unclassified
57 2824753945 Bradyrhizobium sp. HAMBI 2128 Isolate Unclassified
58 2824763712 Bradyrhizobium sp. HAMBI 2129 Isolate Unclassified
59 2824773399 Bradyrhizobium sp. HAMBI 2130 Isolate Unclassified
60 2838029111 Rhizobium tropici SEMIA 4079 Isolate Nodule
61 2838122688 Bradyrhizobium sp. CIR3A Isolate Nodule
62 2838661181 Rhizobium mongolense SEMIA 402 Isolate Nodule
63 2841941048 Bradyrhizobium sp. SBR1B Isolate Nodule
64 2841949485 Bradyrhizobium sp. ERR14 Isolate Nodule
65 2841957949 Bradyrhizobium sp. CIR1 Isolate Nodule
66 2841966195 Bradyrhizobium sp. CIR18 Isolate Nodule
67 2841974524 Bradyrhizobium sp. CIR48 Isolate Nodule
68 2841983080 Bradyrhizobium sp. IAR9 Isolate Nodule
69 2842357229 Rhizobium leucaenae SEMIA 4015 Isolate Nodule
70 2842475841 Rhizobium tropici SEMIA 4059 Isolate Nodule
71 2842482326 Rhizobium lusitanum SEMIA 4060 Isolate Nodule
72 2842502639 Rhizobium tropici SEMIA 4063 Isolate Nodule
73 2847930680 Bradyrhizobium zhanjiangense CCBAU 51778 Isolate Unclassified
74 2852387548 Rhizobium jaguaris CCGE525 Isolate Unclassified
75 2874612657 Bradyrhizobium forestalis INPA54B Isolate Nodule
76 2874620515 Bradyrhizobium nanningense CCBAU 53390 Isolate Unclassified
77 2879083081 Bradyrhizobium zhanjiangense CCBAU 51787 Isolate Unclassified
78 2881364244 Bradyrhizobium sp. RP6 Isolate Unclassified
79 2881665667 Bradyrhizobium vignae LMG 28791 Isolate Unclassified
80 2885366525 Bradyrhizobium sp. LVM 105 Isolate Unclassified
81 2888378607 Bradyrhizobium sp. LCT2 Isolate Unclassified
82 2902682994 Paraburkholderia atlantica CNPSo 3155 Isolate Unclassified
83 2903748898 Bradyrhizobium uaiense UFLA 03-164 Isolate Nodule
84 2904666416 Bradyrhizobium nanningense CCBAU 51757 Isolate Unclassified
85 2904690495 Bradyrhizobium ivorense CI-1B Isolate Nodule
86 2904699407
87 2904711408 Bradyrhizobium sp. USDA 3456 Isolate Unclassified
88 2906610324
89 2906643746 Bradyrhizobium genosp. SA-3 Rp7b Isolate Unclassified
90 2906660503 Bradyrhizobium brasilense UFLA 03-321 Isolate Unclassified
91 2908739725 Bradyrhizobium sp. UFLA03-84 Isolate Nodule
92 2908756301 Bradyrhizobium ivorense CI-41S Isolate Nodule
93 2908775508 Bradyrhizobium sp. SUTN9-2 Isolate Unclassified
94 2919704043 Hydrogenophaga palleronii 4249 Isolate Unclassified
95 2921643360 Paraburkholderia steynii HC1.1ba Isolate Nodule
96 2922361189 Bradyrhizobium australiense WSM 1791 Isolate Nodule
97 2922368715
98 2922393267 Bradyrhizobium sp. WBAH10 Isolate Nodule
99 2922425934
100 2928100450 Novosphingobium sp. 1529 Isolate Rhizosphere
101 2928959182 Novosphingobium capsulatum 1057 Isolate Unclassified
102 2929615660 Bradyrhizobium japonicum TXVA Isolate Nodule
103 2929624759 Bradyrhizobium japonicum TXEA Isolate Nodule
104 2933016740 Rhizobium sp. SEMIA 4085 Isolate Nodule
105 2933577622 Bradyrhizobium japonicum SEMIA 417 Isolate Nodule
106 3005474847 Bradyrhizobium sp. CCBAU 53421 Isolate Nodule
107 3005483717 Bradyrhizobium agreste CNPSo 4010 Isolate Unclassified
108 3005587118 Bradyrhizobium glycinis CNPSo 4016 Isolate Unclassified
109 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
110 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
111 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
112 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
113 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
114 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
115 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
116 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
117 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
118 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
119 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
120 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
121 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
122 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
123 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
124 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
125 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
126 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
127 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
128 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
129 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
130 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
131 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
132 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
133 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
134 3300006943 Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW Metagenome Nodule
135 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
136 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
137 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
138 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
139 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
140 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
141 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
142 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
143 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
144 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
145 3300021321 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 Metagenome Nodule
146 3300021324 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS4 Metagenome Nodule
147 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
148 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
149 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
150 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
151 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
152 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
153 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
154 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
155 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
156 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
157 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
158 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
159 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
160 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
161 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
162 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
163 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
164 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
165 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
166 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
167 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
168 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
169 3300027357 Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes) (version 2) Metagenome Nodule
170 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
171 3300027363 Root nodule microbial communities of legume samples collected from California, USA - Siratro red BW (SPAdes) (version 2) Metagenome Nodule
172 3300027717 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) Metagenome Rhizosphere
173 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
174 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
175 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
176 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
177 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
178 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
179 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
180 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
181 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
182 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
183 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
184 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
185 3300033442 Root nodule microbial communities collected in Santa Monica, California, United States - Edamame nodules 1 Metagenome Nodule
186 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
187 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
188 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
189 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
190 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
191 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
192 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
193 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
194 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
195 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
196 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
197 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
198 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
199 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
200 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
201 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
202 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
203 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
204 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
205 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
206 641522639 Methylobacterium sp. 4-46 Isolate Nodule
207 8005542996 Rhizobium grahamii CCGM3 Isolate Unclassified
208 8006933436 Bradyrhizobium septentrionale 7(2017) Isolate Unclassified
209 8006973647 Bradyrhizobium septentrionale 162S2 Isolate Nodule
210 8019629233 Bradyrhizobium sp. GM6.1 Isolate Nodule
211 8055742211 Bradyrhizobium japonicum 5038 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 49.79
Metatranscriptomes 0
Isolates 50.21

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 39.59
Rhizoplane 2.86
Rhizosphere 35.92
Stem 0
Stem Tuber 0
Unclassified 21.63

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24736J21556_1000059 3300001904 Bacteria 18112
2 JGI24736J21556_1006397 3300001904 Bacteria 1982
3 JGI24740J21852_10002044 3300001979 Bacteria 9228
4 JGI24739J22299_10007937 3300001989 Bacteria 3971
5 JGI24739J22299_10011529 3300001989 Bacteria 3262
6 JGI24737J22298_10030031 3300001990 Bacteria 1702
7 JGI24738J21930_10011262 3300002075 Bacteria 1970
8 JGI25406J46586_10003445 3300003203 Bacteria 7439
9 Ga0070658_10000167 3300005327 Bacteria 57334
10 Ga0070658_10027150 3300005327 Bacteria 4597
11 Ga0070682_100087271 3300005337 Bacteria 2034
12 Ga0070661_100012619 3300005344 Bacteria 5912
13 Ga0070669_100049960 3300005353 Bacteria 3054
14 Ga0070659_100027243 3300005366 Bacteria 4401
15 Ga0070667_100427743 3300005367 Bacteria 1208
16 Ga0070663_100022029 3300005455 Bacteria 4251
17 Ga0070684_100088452 3300005535 Bacteria 2752
18 Ga0068855_100344330 3300005563 Bacteria 1643
19 Ga0070664_100386930 3300005564 Bacteria 1277
20 Ga0068854_100016137 3300005578 Bacteria 4970
21 Ga0068856_100024517 3300005614 Bacteria 5873
22 Ga0068856_100490391 3300005614 Bacteria 1250
23 Ga0068852_100006804 3300005616 Bacteria 8299
24 Ga0068851_10001820 3300005834 Bacteria 9328
25 Ga0068860_100117486 3300005843 Bacteria 2545
26 Ga0081539_10000001 3300005985 Bacteria 808331
27 Ga0097621_100008758 3300006237 Bacteria 7310
28 Ga0068871_100010810 3300006358 Bacteria 6680
29 Ga0099824_1008694 3300006942 Bacteria 12863
30 Ga0099824_1010794 3300006942 Bacteria 10585
31 Ga0099822_1039423 3300006943 Bacteria 2707
32 Ga0099823_1098913 3300006944 Bacteria 908
33 Ga0105247_10033902 3300009101 Bacteria 3108
34 Ga0105248_10004370 3300009177 Bacteria 15640
35 Ga0105238_10021395 3300009551 Bacteria 6589
36 Ga0157372_10086866 3300013307 Bacteria 3548
37 Ga0157375_10430996 3300013308 Bacteria 1484
38 Ga0157380_10210543 3300014326 Bacteria 1732
39 Ga0157379_10019629 3300014968 Bacteria 5971
40 Ga0157376_10221980 3300014969 Bacteria 1751
41 Ga0214544_1002974 3300021320 Bacteria 35416
42 Ga0214544_1004916 3300021320 Bacteria 26374
43 Ga0214544_1020942 3300021320 Bacteria 4458
44 Ga0214542_1002711 3300021321 Bacteria 36444
45 Ga0214542_1022614 3300021321 Bacteria 3983
46 Ga0214545_1002344 3300021324 Bacteria 36444
47 Ga0214545_1023667 3300021324 Bacteria 3983
48 Ga0214545_1024139 3300021324 Bacteria 3826
49 Ga0214545_1036884 3300021324 Bacteria 1518
50 Ga0214543_1002448 3300021327 Bacteria 36444
51 Ga0214543_1003085 3300021327 Bacteria 32523
52 Ga0214543_1022495 3300021327 Bacteria 4457
53 Ga0207656_10003249 3300025321 Bacteria 5566
54 Ga0207647_10006230 3300025904 Bacteria 8691
55 Ga0207647_10023927 3300025904 Bacteria 4033
56 Ga0207705_10000004 3300025909 Bacteria 705756
57 Ga0207705_10016882 3300025909 Bacteria 5229
58 Ga0207654_10000534 3300025911 Bacteria 21724
59 Ga0207695_10012817 3300025913 Bacteria 10041
60 Ga0207671_10001418 3300025914 Bacteria 27830
61 Ga0207657_10009609 3300025919 Bacteria 9707
62 Ga0207649_10080373 3300025920 Bacteria 2108
63 Ga0207694_10002689 3300025924 Bacteria 14378
64 Ga0207690_10146526 3300025932 Bacteria 1746
65 Ga0207706_10120229 3300025933 Bacteria 2309
66 Ga0207711_10023798 3300025941 Bacteria 5127
67 Ga0207689_10108092 3300025942 Bacteria 2286
68 Ga0207679_10227564 3300025945 Bacteria 1572
69 Ga0207667_10000603 3300025949 Bacteria 46518
70 Ga0207667_10362967 3300025949 Bacteria 1477
71 Ga0207640_10005932 3300025981 Bacteria 6669
72 Ga0207702_10000723 3300026078 Bacteria 35400
73 Ga0207702_10019902 3300026078 Bacteria 5560
74 Ga0207674_10182094 3300026116 Bacteria 2052
75 Ga0207675_100000012 3300026118 Bacteria 140594
76 Ga0207698_10000019 3300026142 Bacteria 145910
77 Ga0207698_10001573 3300026142 Bacteria 13327
78 Ga0209389_1000101 3300027296 Bacteria 78525
79 Ga0209389_1000204 3300027296 Bacteria 42757
80 Ga0209589_1000004 3300027357 Bacteria 578529
81 Ga0209589_1000139 3300027357 Bacteria 78582
82 Ga0209489_100004 3300027361 Bacteria 578529
83 Ga0209489_100009 3300027361 Bacteria 263873
84 Ga0209489_103337 3300027361 Bacteria 31450
85 Ga0209700_100004 3300027363 Bacteria 578529
86 Ga0209700_100026 3300027363 Bacteria 224498
87 Ga0209998_10036099 3300027717 Bacteria 1109
88 Ga0268264_10102338 3300028381 Bacteria 2492
89 Ga0265340_10028361 3300031247 Bacteria 2817
90 Ga0307408_100003083 3300031548 Bacteria 11492
91 Ga0307405_10009858 3300031731 Bacteria 4916
92 Ga0307410_10003011 3300031852 Bacteria 8316
93 Ga0307407_10007921 3300031903 Bacteria 4842
94 Ga0307412_10000537 3300031911 Bacteria 22599
95 Ga0307409_100008003 3300031995 Bacteria 6372
96 Ga0307416_100000407 3300032002 Bacteria 22111
97 Ga0307414_10371108 3300032004 Bacteria 1234
98 Ga0307411_10002631 3300032005 Bacteria 8034
99 Ga0307415_100011992 3300032126 Bacteria 4991
100 Ga0315911_1000016 3300033442 Bacteria 166408
101 Ga0373946_0104744 3300035171 Bacteria 1273
102 Ga0451576_0001437 3300045051 Bacteria 40602
103 Ga0495603_0015942 3300046455 Unclassified 4542
104 Ga0495629_0150006 3300046459 Bacteria 1620
105 Ga0495582_0061849 3300046473 Bacteria 2068
106 Ga0495594_0079748 3300046499 Bacteria 1828
107 Ga0495596_0020651 3300046500 Bacteria 2694
108 Ga0495583_0004117 3300046506 Bacteria 10659
109 Ga0495668_0011580 3300046616 Bacteria 5274
110 Ga0495658_0055037 3300046683 Bacteria 2265
111 Ga0495581_0034189 3300047315 Bacteria 2941
112 Ga0495687_003723 3300047443 Bacteria 10818
113 Ga0496100_0017351 3300048903 Bacteria 4248
114 Ga0496101_0001706 3300048904 Bacteria 13144
115 Ga0496102_0025213 3300048905 Bacteria 5291
116 Ga0496105_0095746 3300048908 Bacteria 2452
117 Ga0496106_0012415 3300048909 Bacteria 6290
118 Ga0496107_0005957 3300048910 Bacteria 8354
119 Ga0496114_0004129 3300048917 Bacteria 11236
120 Ga0495619_0079327 3300053085 Unclassified 2208

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300014969 Ga0157376_10221980 Ga0157376_102219801 235
2 3300046459 Ga0495629_0150006 Ga0495629_0150006_62_853 239
3 3300006944 Ga0099823_1098913 Ga0099823_10989131 258
4 iso_pu_bacteria 8019629233 8019632181 263
5 3300035171 Ga0373946_0104744 Ga0373946_0104744_329_1210 269
6 iso_pu_bacteria 2515154122 2515686243 280
7 iso_pu_bacteria 2902682994 2902690048 280
8 iso_pu_bacteria 2513237166 2514055862 281
9 3300006942 Ga0099824_1008694 Ga0099824_10086943 282
10 iso_pu_bacteria 2824600985 2824601143 282
11 iso_pu_bacteria 2922393267 2922398099 282
12 iso_pu_bacteria 2919704043 2919708664 283
13 3300003203 JGI25406J46586_10003445 JGI25406J46586_100034456 284
14 3300005985 Ga0081539_10000001 Ga0081539_1000000117 284
15 3300027357 Ga0209589_1000004 Ga0209589_1000004424 284
16 3300027361 Ga0209489_100004 Ga0209489_100004424 284
17 3300027363 Ga0209700_100004 Ga0209700_100004424 284
18 3300005353 Ga0070669_100049960 Ga0070669_1000499602 285
19 3300027717 Ga0209998_10036099 Ga0209998_100360992 285
20 3300021320 Ga0214544_1002974 Ga0214544_10029744 286
21 3300021321 Ga0214542_1002711 Ga0214542_10027117 286
22 3300021324 Ga0214545_1002344 Ga0214545_10023447 286
23 3300021327 Ga0214543_1002448 Ga0214543_10024487 286
24 iso_pu_bacteria 2524023209 2524463320 286
25 iso_pu_bacteria 2545555834 2545675295 286
26 iso_pu_bacteria 2615840626 2616311988 286
27 iso_pu_bacteria 2775507266 2778178717 286
28 iso_pu_bacteria 2838029111 2838034904 286
29 iso_pu_bacteria 2841941048 2841946028 286
30 iso_pu_bacteria 2842357229 2842362857 286
31 iso_pu_bacteria 2842475841 2842481651 286
32 iso_pu_bacteria 2842482326 2842488725 286
33 iso_pu_bacteria 2842502639 2842508525 286
34 iso_pu_bacteria 641522639 641644001 286
35 3300031548 Ga0307408_100003083 Ga0307408_1000030834 287
36 3300031731 Ga0307405_10009858 Ga0307405_100098583 287
37 3300031852 Ga0307410_10003011 Ga0307410_100030114 287
38 3300031903 Ga0307407_10007921 Ga0307407_100079214 287
39 3300031911 Ga0307412_10000537 Ga0307412_1000053721 287
40 3300031995 Ga0307409_100008003 Ga0307409_1000080035 287
41 3300032002 Ga0307416_100000407 Ga0307416_10000040710 287
42 3300032005 Ga0307411_10002631 Ga0307411_100026318 287
43 3300032126 Ga0307415_100011992 Ga0307415_1000119924 287
44 iso_pu_bacteria 2513237140 2513883422 288
45 iso_pu_bacteria 2515154107 2515611146 288
46 iso_pu_bacteria 2791355091 2792624382 288
47 iso_pu_bacteria 2791355092 2792630242 288
48 iso_pu_bacteria 2904666416 2904672618 288
49 3300031247 Ga0265340_10028361 Ga0265340_100283613 289
50 iso_pu_bacteria 2508501128 2509150687 290
51 iso_pu_bacteria 2513237088 2513600820 290
52 iso_pu_bacteria 2617270735 2617353892 290
53 iso_pu_bacteria 8005542996 8005549839 290
54 iso_pu_bacteria 2524023210 2524470943 291
55 iso_pu_bacteria 2524023228 2524541549 291
56 iso_pu_bacteria 2824661429 2824662668 291
57 iso_pu_bacteria 2824679649 2824683812 291
58 iso_pu_bacteria 2881364244 2881369140 291
59 iso_pu_bacteria 2906610324 2906615288 291
60 iso_pu_bacteria 2922361189 2922363098 291
61 iso_pu_bacteria 2922368715 2922369603 291
62 iso_pu_bacteria 2922425934 2922432720 291
63 iso_pu_bacteria 3005587118 3005591487 291
64 iso_pu_bacteria 8006933436 8006934357 291
65 iso_pu_bacteria 8006973647 8006974332 291
66 3300045051 Ga0451576_0001437 Ga0451576_0001437_5510_6457 292
67 iso_pu_bacteria 2513237305 2514418594 292
68 iso_pu_bacteria 2721755686 2723572168 292
69 iso_pu_bacteria 2852387548 2852392637 292
70 iso_pu_bacteria 2512047030 2512348629 293
71 iso_pu_bacteria 2512047030 2512351770 293
72 iso_pu_bacteria 2534681796 2535520895 293
73 iso_pu_bacteria 2718217991 2719637245 293
74 iso_pu_bacteria 2921643360 2921656607 293
75 3300021324 Ga0214545_1036884 Ga0214545_10368842 295
76 iso_pu_bacteria 2841966195 2841972640 295
77 iso_pu_bacteria 2841983080 2841986085 295
78 iso_pu_bacteria 2534681796 2535520859 296
79 iso_pu_bacteria 2615840626 2616313072 296
80 iso_pu_bacteria 2775507266 2778178769 296
81 iso_pu_bacteria 8005542996 8005549802 296
82 3300006237 Ga0097621_100008758 Ga0097621_1000087581 298
83 3300006358 Ga0068871_100010810 Ga0068871_1000108103 298
84 3300014326 Ga0157380_10210543 Ga0157380_102105432 298
85 3300046455 Ga0495603_0015942 Ga0495603_0015942_1798_2766 298
86 3300046473 Ga0495582_0061849 Ga0495582_0061849_460_1428 298
87 3300046683 Ga0495658_0055037 Ga0495658_0055037_828_1796 298
88 3300047315 Ga0495581_0034189 Ga0495581_0034189_1787_2755 298
89 3300048903 Ga0496100_0017351 Ga0496100_0017351_369_1337 298
90 3300048904 Ga0496101_0001706 Ga0496101_0001706_3084_4052 298
91 3300048905 Ga0496102_0025213 Ga0496102_0025213_4114_5082 298
92 3300048908 Ga0496105_0095746 Ga0496105_0095746_289_1257 298
93 3300048909 Ga0496106_0012415 Ga0496106_0012415_3439_4407 298
94 3300048910 Ga0496107_0005957 Ga0496107_0005957_104_1072 298
95 3300048917 Ga0496114_0004129 Ga0496114_0004129_9697_10665 298
96 3300053085 Ga0495619_0079327 Ga0495619_0079327_1217_2185 298
97 iso_pu_bacteria 2841949485 2841955201 299
98 iso_pu_bacteria 2841974524 2841976810 299
99 iso_pu_bacteria 2881665667 2881669516 299
100 iso_pu_bacteria 2838661181 2838665533 300
101 iso_pu_bacteria 2933016740 2933022247 300
102 3300046499 Ga0495594_0079748 Ga0495594_0079748_604_1590 302
103 3300046500 Ga0495596_0020651 Ga0495596_0020651_1589_2575 302
104 3300046506 Ga0495583_0004117 Ga0495583_0004117_5834_6820 302
105 3300046616 Ga0495668_0011580 Ga0495668_0011580_296_1282 302
106 3300047443 Ga0495687_003723 Ga0495687_003723_8595_9581 302
107 iso_pu_bacteria 2824671348 2824671416 302
108 iso_pu_bacteria 2824687955 2824688107 302
109 iso_pu_bacteria 2824696289 2824696837 302
110 3300006942 Ga0099824_1010794 Ga0099824_101079410 303
111 3300006943 Ga0099822_1039423 Ga0099822_10394233 303
112 3300025924 Ga0207694_10002689 Ga0207694_100026894 303
113 3300027296 Ga0209389_1000101 Ga0209389_100010127 303
114 3300027357 Ga0209589_1000139 Ga0209589_100013968 303
115 3300027361 Ga0209489_100009 Ga0209489_100009246 303
116 iso_pu_bacteria 2933016740 2933017783 303
117 iso_pu_bacteria 2847930680 2847933418 304
118 iso_pu_bacteria 2513237096 2513660831 305
119 iso_pu_bacteria 2513237145 2513922653 305
120 iso_pu_bacteria 2513237161 2514017371 305
121 iso_pu_bacteria 2824746037 2824749387 305
122 iso_pu_bacteria 2838122688 2838129867 305
123 iso_pu_bacteria 2885366525 2885371573 305
124 iso_pu_bacteria 2906660503 2906664741 305
125 iso_pu_bacteria 2908775508 2908777830 305
126 iso_pu_bacteria 2513237092 2513622738 306
127 iso_pu_bacteria 2513237095 2513652850 306
128 iso_pu_bacteria 2513237139 2513879448 306
129 iso_pu_bacteria 2517093001 2517108384 306
130 iso_pu_bacteria 2528768022 2528855884 306
131 iso_pu_bacteria 2617270741 2617379344 306
132 iso_pu_bacteria 2802429603 2805917339 306
133 iso_pu_bacteria 2816332527 2818243613 306
134 iso_pu_bacteria 2824609381 2824609471 306
135 iso_pu_bacteria 2824617872 2824618251 306
136 iso_pu_bacteria 2824626560 2824627042 306
137 iso_pu_bacteria 2824635225 2824635289 306
138 iso_pu_bacteria 2824644064 2824644128 306
139 iso_pu_bacteria 2824653114 2824654634 306
140 iso_pu_bacteria 2824704595 2824704735 306
141 iso_pu_bacteria 2824714736 2824714799 306
142 iso_pu_bacteria 2824723954 2824724136 306
143 iso_pu_bacteria 2824732956 2824733493 306
144 iso_pu_bacteria 2824753945 2824754737 306
145 iso_pu_bacteria 2824763712 2824764488 306
146 iso_pu_bacteria 2824773399 2824778823 306
147 iso_pu_bacteria 2841957949 2841963749 306
148 iso_pu_bacteria 2874612657 2874617041 306
149 iso_pu_bacteria 2874620515 2874623851 306
150 iso_pu_bacteria 2879083081 2879088779 306
151 iso_pu_bacteria 2881364244 2881369141 306
152 iso_pu_bacteria 2888378607 2888386755 306
153 iso_pu_bacteria 2904711408 2904713943 306
154 iso_pu_bacteria 2906643746 2906646883 306
155 iso_pu_bacteria 2929615660 2929621712 306
156 iso_pu_bacteria 2929624759 2929631884 306
157 iso_pu_bacteria 2933577622 2933583266 306
158 iso_pu_bacteria 3005483717 3005490634 306
159 iso_pu_bacteria 8055742211 8055744087 306
160 3300025942 Ga0207689_10108092 Ga0207689_101080921 307
161 iso_pu_bacteria 2513237137 2513863512 307
162 iso_pu_bacteria 2517572143 2517890660 307
163 iso_pu_bacteria 2524023228 2524541548 307
164 iso_pu_bacteria 2791355197 2793071681 307
165 iso_pu_bacteria 2903748898 2903752272 307
166 iso_pu_bacteria 2904690495 2904693741 307
167 iso_pu_bacteria 2904699407 2904710694 307
168 iso_pu_bacteria 2908739725 2908739932 307
169 iso_pu_bacteria 2908756301 2908763296 307
170 iso_pu_bacteria 3005474847 3005482134 307
171 iso_pu_bacteria 8006933436 8006934358 307
172 iso_pu_bacteria 8006973647 8006974333 307
173 iso_pu_bacteria 2928100450 2928103587 309
174 iso_pu_bacteria 2928959182 2928963268 309
175 iso_pu_bacteria 3005587118 3005591488 309
176 3300013308 Ga0157375_10430996 Ga0157375_104309962 310
177 3300021320 Ga0214544_1004916 Ga0214544_10049162 310
178 3300021320 Ga0214544_1020942 Ga0214544_10209423 310
179 3300021321 Ga0214542_1022614 Ga0214542_10226142 310
180 3300021324 Ga0214545_1023667 Ga0214545_10236675 310
181 3300021324 Ga0214545_1024139 Ga0214545_10241393 310
182 3300021327 Ga0214543_1003085 Ga0214543_10030853 310
183 3300021327 Ga0214543_1022495 Ga0214543_10224955 310
184 3300027296 Ga0209389_1000204 Ga0209389_100020423 310
185 3300027361 Ga0209489_103337 Ga0209489_10333719 310
186 3300027363 Ga0209700_100026 Ga0209700_10002653 310
187 3300005843 Ga0068860_100117486 Ga0068860_1001174862 311
188 3300009101 Ga0105247_10033902 Ga0105247_100339024 311
189 3300009177 Ga0105248_10004370 Ga0105248_100043706 311
190 3300014968 Ga0157379_10019629 Ga0157379_100196294 311
191 3300025941 Ga0207711_10023798 Ga0207711_100237982 311
192 3300026118 Ga0207675_100000012 Ga0207675_100000012132 311
193 3300028381 Ga0268264_10102338 Ga0268264_101023382 311
194 3300033442 Ga0315911_1000016 Ga0315911_1000016143 311
195 iso_pu_bacteria 2738541275 2738712958 311
196 iso_pu_bacteria 2738541301 2738851382 311
197 iso_pu_bacteria 2738541304 2738867112 311
198 iso_pu_bacteria 2738543022 2739299629 311
199 iso_pu_bacteria 2738543033 2739361308 311
200 3300005367 Ga0070667_100427743 Ga0070667_1004277431 312
201 3300032004 Ga0307414_10371108 Ga0307414_103711081 315
202 3300001904 JGI24736J21556_1000059 JGI24736J21556_10000593 316
203 3300001904 JGI24736J21556_1006397 JGI24736J21556_10063971 316
204 3300001979 JGI24740J21852_10002044 JGI24740J21852_100020442 316
205 3300001989 JGI24739J22299_10007937 JGI24739J22299_100079372 316
206 3300001989 JGI24739J22299_10011529 JGI24739J22299_100115292 316
207 3300001990 JGI24737J22298_10030031 JGI24737J22298_100300312 316
208 3300002075 JGI24738J21930_10011262 JGI24738J21930_100112622 316
209 3300005327 Ga0070658_10000167 Ga0070658_1000016758 316
210 3300005327 Ga0070658_10027150 Ga0070658_100271503 316
211 3300005337 Ga0070682_100087271 Ga0070682_1000872712 316
212 3300005344 Ga0070661_100012619 Ga0070661_1000126196 316
213 3300005366 Ga0070659_100027243 Ga0070659_1000272432 316
214 3300005455 Ga0070663_100022029 Ga0070663_1000220292 316
215 3300005535 Ga0070684_100088452 Ga0070684_1000884522 316
216 3300005563 Ga0068855_100344330 Ga0068855_1003443301 316
217 3300005564 Ga0070664_100386930 Ga0070664_1003869301 316
218 3300005578 Ga0068854_100016137 Ga0068854_1000161374 316
219 3300005614 Ga0068856_100024517 Ga0068856_1000245175 316
220 3300005614 Ga0068856_100490391 Ga0068856_1004903911 316
221 3300005616 Ga0068852_100006804 Ga0068852_1000068042 316
222 3300005834 Ga0068851_10001820 Ga0068851_100018206 316
223 3300009551 Ga0105238_10021395 Ga0105238_100213956 316
224 3300013307 Ga0157372_10086866 Ga0157372_100868662 316
225 3300025321 Ga0207656_10003249 Ga0207656_100032492 316
226 3300025904 Ga0207647_10006230 Ga0207647_100062302 316
227 3300025904 Ga0207647_10023927 Ga0207647_100239272 316
228 3300025909 Ga0207705_10000004 Ga0207705_10000004196 316
229 3300025909 Ga0207705_10016882 Ga0207705_100168823 316
230 3300025911 Ga0207654_10000534 Ga0207654_1000053411 316
231 3300025913 Ga0207695_10012817 Ga0207695_100128176 316
232 3300025914 Ga0207671_10001418 Ga0207671_100014182 316
233 3300025919 Ga0207657_10009609 Ga0207657_1000960910 316
234 3300025920 Ga0207649_10080373 Ga0207649_100803732 316
235 3300025932 Ga0207690_10146526 Ga0207690_101465261 316
236 3300025933 Ga0207706_10120229 Ga0207706_101202292 316
237 3300025945 Ga0207679_10227564 Ga0207679_102275642 316
238 3300025949 Ga0207667_10000603 Ga0207667_1000060324 316
239 3300025949 Ga0207667_10362967 Ga0207667_103629672 316
240 3300025981 Ga0207640_10005932 Ga0207640_100059323 316
241 3300026078 Ga0207702_10000723 Ga0207702_1000072311 316
242 3300026078 Ga0207702_10019902 Ga0207702_100199025 316
243 3300026116 Ga0207674_10182094 Ga0207674_101820942 316
244 3300026142 Ga0207698_10000019 Ga0207698_100000192 316
245 3300026142 Ga0207698_10001573 Ga0207698_1000157311 316

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

64

123

0.97

PF03466

LysR_substrate

LysR substrate binding domain

149

354

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
4iht-assembly2.cif.gz_C crystal structure of benm_dbd/bena site 1 dna complex 0.8466 6 85
4ihs-assembly1.cif.gz_A crystal structure of benm_dbd/catb site 1 dna complex 0.8421 6 85
4ihs-assembly3.cif.gz_C crystal structure of benm_dbd/catb site 1 dna complex 0.8415 6 85
4iht-assembly1.cif.gz_A crystal structure of benm_dbd/bena site 1 dna complex 0.8398 6 85
4ihs-assembly1.cif.gz_B crystal structure of benm_dbd/catb site 1 dna complex 0.8373 6 85
ID Description Score Start End Superfamily
2esnD03 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.8814 171 245 3.40.190.10
3oxnC01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.8698 90 281 3.40.190.10
af_P30979_21_108_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8687 6 84 1.10.10.10
af_P23841_7_96_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.8686 6 85 1.10.10.10
af_Q2FZS7_1_83_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.864 6 85 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A7Y8HXQ6-F1-model_v4 LysR family transcriptional regulator 0.8539 6 90 GO:0000976
GO:0003700
AF-A0A3S4ENQ8-F1-model_v4 deleted 0.8318 147 281
AF-A0A4Q5W9K1-F1-model_v4 deleted 0.816 99 284
AF-A0A379ZR92-F1-model_v4 CysJI operon transcriptional activator 0.804 88 279 GO:0005829
GO:0006355
AF-A0A7G6RG65-F1-model_v4 deleted 0.7819 1 95

Feature Viewer

pLDDT pTM Quality
82.93 0.66 Medium
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Predicted Structure (AlphaFold2)

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