F356097

General Info

Members Datasets Scaffolds Average Seq Length
243 187 178 293

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|3006321560|3006322943
Length 338
Sequence QLRYVLAVAETGSFTRAAERCLVVQSALSHQVARLERELGARLFERTSRRVRLTPAGEAFLPAARQCLDAAERARAEVAAAVGEVRGRLAVGSIPTVTAADVPGALRDFHERHPQVRITLRVGASDDLIEQVREGAVDVAFLGMPTTADTQGVAVHELARGSLVAVVAPDHPLAGRESVSLRRLAAETFVELPAGTAGRAQSEQAFAAAGLSRDVAYEVSSAEFIPRLVGPGLGVAMLPSAYAPHLTGVATVEVTDAPARVEYVIWSRTAPTPAATAFLAILGVPGTEALGGARTGPRAGSPGDGPGAGRPAAGRAAGAGSRPATDRTGAGRPGARGG

Samples

Sample ID Description Type Environment
1 2506520007 Serratia plymuthica AS9 Isolate Rhizosphere
2 2506520008 Serratia plymuthica AS12 Isolate Unclassified
3 2508501071 Serratia proteamaculans S4 Isolate Rhizosphere
4 2511231024 Pseudomonas sp. GM84 Isolate Nodule
5 2554235231 Pseudomonas putida MTCC 5279 Isolate Unclassified
6 2582581312 Streptomyces atratus OK008 Isolate Rhizosphere
7 2616644941 Streptomyces atratus OK807 Isolate Rhizosphere
8 2643221578 Streptomyces sp. Root63 Isolate Unclassified
9 2643221604 Nocardioides sp. Root190 Isolate Unclassified
10 2643221617 Nocardioides sp. Root79 Isolate Unclassified
11 2643221620 Nocardioides sp. Root240 Isolate Unclassified
12 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
13 2654587920 Serratia plymuthica HRO-C48 Isolate Rhizosphere
14 2687453601 Serratia plymuthica 3Rp8 Isolate Unclassified
15 2738543011 Rhodococcus sp. OK611 Isolate Unclassified
16 2765235841 Pseudomonas putida AA7 Isolate Unclassified
17 2772190666 Serratia surfactantfaciens YD25 Isolate Unclassified
18 2791354901 Actinophytocola xanthii 11-183 Isolate Rhizosphere
19 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
20 2806310673 Serratia quinivorans NCTC 13189 Isolate Rhizosphere
21 2806310737 Pseudomonas mosselii BS011 Isolate Unclassified
22 2806310745 Pseudomonas mosselii PtA1 Isolate Unclassified
23 2808606448 Streptomyces sp. 193411 Isolate Unclassified
24 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
25 2867475112 Streptomyces sp. TM32 Isolate Unclassified
26 2869551831 Serratia inhibens PRI-2C Isolate Rhizosphere
27 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
28 2888366609 Serratia sp. NGAS9 Isolate Rhizosphere
29 2889300758 Rhodococcus sp. PvR099 Isolate Rhizosphere
30 2912757875 Streptomyces sp. S4.7 Isolate Rhizosphere
31 2912963787 Pseudomonas sp. R32 Isolate Rhizosphere
32 2919155634 Pseudomonas fulva 1992 Isolate Unclassified
33 2919713450 Nocardia kruczakiae 4272 Isolate Rhizosphere
34 2937967321 Serratia sp. YC16 Isolate Unclassified
35 2939651529 Pseudomonas sp. 2835 Isolate Rhizosphere
36 2939743619 Rhodococcus sp. PvR044 Isolate Rhizosphere
37 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
38 2995463766 Streptacidiphilus fuscans NEAU-YB345 Isolate Unclassified
39 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
40 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified
41 3006321560 Actinacidiphila epipremni PRB2-1 Isolate Unclassified
42 3007419365 Pseudomonas vanderleydeniana RW8P3 Isolate Unclassified
43 3007803356 Pseudomonas sp. CM27 Isolate Unclassified
44 3007872151 Pseudomonas sp. SWRI51 Isolate Rhizosphere
45 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
46 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
47 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
48 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
49 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
50 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
51 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
52 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
53 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
54 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
55 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
56 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
57 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
58 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
59 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
60 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
61 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
62 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
63 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
64 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
65 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
66 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
67 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
68 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
69 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
70 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
71 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
72 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
73 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
74 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
75 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
92 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
93 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
94 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
95 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
96 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
97 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
98 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
99 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
100 3300042013 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z071817_5339 Metagenome Rhizosphere
101 3300042136 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530F_E14_072516_1294 Metagenome Rhizosphere
102 3300042137 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913F_E14_072516_1519 Metagenome Rhizosphere
103 3300042142 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_072516_1610 Metagenome Rhizosphere
104 3300042533 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0826F_E14_072516_1472 Metagenome Rhizosphere
105 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
106 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
107 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
108 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
109 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
110 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
111 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
112 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
113 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
114 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
115 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
116 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
117 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
118 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
119 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
120 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
121 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
122 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
123 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
124 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
125 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
126 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
127 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
128 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
129 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
130 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
131 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
132 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
133 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
134 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
135 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
136 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
137 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
138 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
139 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
140 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
141 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
142 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
143 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
144 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
145 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
146 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
147 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
148 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
149 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
150 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
151 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
152 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
153 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
154 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
155 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
156 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
157 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
158 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
159 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
160 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
161 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
162 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
163 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
164 3300053135 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 endosphere Metagenome Endosphere
165 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
166 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
167 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
168 640753048 Serratia proteamaculans 568 Isolate Endosphere
169 8003870546 Micromonospora tarensis STR1s_6 Isolate Rhizosphere
170 8004592986 Serratia sp. S119 Isolate Unclassified
171 8015394850 Serratia sp. PGPR-27 Isolate Rhizosphere
172 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
173 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
174 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
175 8048356638 Streptomyces rhizosphaericus DSM 41760 Isolate Rhizosphere
176 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
177 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
178 8052494512 Pseudomonas putida LD6 Isolate Unclassified
179 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
180 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
181 8054929484 Pseudomonas vlassakiae RW4S1 Isolate Rhizosphere
182 8055878733 Pseudomonas palmensis BBB001 Isolate Rhizosphere
183 8056060235 Nocardiopsis endophytica RSe5-2 Isolate Unclassified
184 8056115690 Pseudomonas muyukensis COW39 Isolate Rhizosphere
185 8056120720 Pseudomonas maumuensis COW77 Isolate Rhizosphere
186 8056137416 Pseudomonas fakonensis COW40 Isolate Rhizosphere
187 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 72.43
Metatranscriptomes 0.82
Isolates 26.75

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.47
Nodule 2.06
Rhizoplane 4.94
Rhizosphere 66.26
Stem 0
Stem Tuber 0
Unclassified 24.28

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10174672 3300003323 Bacteria 1276
2 Ga0006562J51391_1192842 3300003578 Bacteria 1844
3 Ga0006562J51391_1192843 3300003578 Bacteria 1680
4 Ga0070710_10001903 3300005437 Bacteria 9884
5 Ga0070663_100055592 3300005455 Bacteria 2834
6 Ga0068853_100051559 3300005539 Bacteria 3542
7 Ga0070665_100521227 3300005548 Bacteria 1200
8 Ga0068855_100001772 3300005563 Bacteria 26981
9 Ga0068856_100058348 3300005614 Bacteria 3811
10 Ga0070715_10104915 3300006163 Bacteria 1324
11 Ga0099823_1003594 3300006944 Bacteria 14769
12 Ga0079104_1005602 3300006946 Bacteria 4973
13 Ga0075435_100099837 3300007076 Bacteria 2404
14 Ga0105251_10000125 3300009011 Bacteria 77078
15 Ga0105251_10000263 3300009011 Bacteria 52344
16 Ga0105251_10000299 3300009011 Bacteria 49758
17 Ga0105251_10003941 3300009011 Bacteria 10530
18 Ga0105251_10059677 3300009011 Bacteria 1798
19 Ga0105251_10089466 3300009011 Bacteria 1416
20 Ga0105244_10000031 3300009036 Bacteria 177606
21 Ga0105244_10003616 3300009036 Bacteria 10965
22 Ga0105244_10004567 3300009036 Bacteria 9482
23 Ga0105244_10005520 3300009036 Bacteria 8391
24 Ga0105250_10003168 3300009092 Bacteria 7871
25 Ga0105240_10009395 3300009093 Bacteria 13850
26 Ga0105247_10000048 3300009101 Bacteria 150745
27 Ga0105247_10013487 3300009101 Bacteria 4901
28 Ga0105241_10000103 3300009174 Bacteria 60683
29 Ga0105241_10000544 3300009174 Bacteria 28413
30 Ga0105248_10141342 3300009177 Bacteria 2716
31 Ga0105238_10002217 3300009551 Bacteria 19607
32 Ga0157373_10002539 3300013100 Bacteria 13902
33 Ga0157370_10003691 3300013104 Bacteria 17891
34 Ga0157370_10306166 3300013104 Bacteria 1466
35 Ga0157374_10060065 3300013296 Bacteria 3557
36 Ga0157372_10003188 3300013307 Bacteria 17700
37 Ga0182008_10000152 3300014497 Bacteria 54242
38 Ga0182008_10001134 3300014497 Bacteria 18339
39 Ga0182006_1020230 3300015261 Bacteria 2790
40 Ga0182007_10003974 3300015262 Bacteria 6827
41 Ga0163161_10000005 3300017792 Bacteria 327860
42 Ga0209759_1003251 3300025256 Bacteria 6566
43 Ga0207426_1003584 3300025302 Bacteria 8250
44 Ga0207426_1007582 3300025302 Bacteria 4518
45 Ga0207696_1000039 3300025711 Bacteria 324954
46 Ga0207696_1025478 3300025711 Bacteria 1843
47 Ga0207655_1000029 3300025728 Bacteria 432187
48 Ga0207655_1000078 3300025728 Bacteria 219360
49 Ga0207655_1000553 3300025728 Bacteria 46768
50 Ga0207655_1000614 3300025728 Bacteria 42960
51 Ga0207713_1000086 3300025735 Bacteria 157106
52 Ga0207713_1000333 3300025735 Bacteria 52661
53 Ga0207713_1001302 3300025735 Bacteria 20515
54 Ga0207713_1006535 3300025735 Bacteria 7074
55 Ga0207692_10000143 3300025898 Bacteria 22120
56 Ga0207710_10000026 3300025900 Bacteria 307644
57 Ga0207654_10000091 3300025911 Bacteria 60737
58 Ga0207695_10001237 3300025913 Bacteria 43719
59 Ga0207671_10000470 3300025914 Bacteria 54790
60 Ga0207663_10206910 3300025916 Bacteria 1419
61 Ga0207694_10000512 3300025924 Bacteria 35151
62 Ga0207709_10099927 3300025935 Bacteria 1916
63 Ga0207689_10256907 3300025942 Bacteria 1445
64 Ga0207640_10020618 3300025981 Bacteria 3916
65 Ga0207678_10077308 3300026067 Bacteria 2851
66 Ga0207678_10289136 3300026067 Bacteria 1407
67 Ga0207702_10556467 3300026078 Bacteria 1122
68 Ga0207676_10376247 3300026095 Bacteria 1321
69 Ga0209281_1000413 3300027111 Bacteria 64492
70 Ga0209389_1000037 3300027296 Bacteria 125897
71 Ga0307512_10017859 3300030522 Bacteria 6494
72 Ga0307513_10090028 3300031456 Bacteria 3131
73 Ga0307406_10057542 3300031901 Bacteria 2494
74 Ga0307409_100064667 3300031995 Bacteria 2875
75 Ga0307415_100034440 3300032126 Bacteria 3298
76 Ga0451853_1404469 3300041512 Bacteria 2471
77 Ga0439432_000261 3300042006 Bacteria 18877
78 Ga0439432_008141 3300042006 Bacteria 3690
79 Ga0439456_000011 3300042013 Bacteria 74739
80 Ga0450900_000292 3300042136 Bacteria 3588
81 Ga0450902_008991 3300042137 Bacteria 1569
82 Ga0450905_000102 3300042142 Bacteria 8404
83 Ga0450901_000168 3300042533 Bacteria 7593
84 Ga0466972_0029846 3300044658 Bacteria 2684
85 Ga0466972_0137596 3300044658 Bacteria 1149
86 Ga0466965_0015285 3300044683 Bacteria 3646
87 Ga0466965_0033817 3300044683 Bacteria 2499
88 Ga0466965_0085750 3300044683 Bacteria 1596
89 Ga0466968_0006826 3300044735 Bacteria 4320
90 Ga0466970_0037788 3300044765 Bacteria 2560
91 Ga0466970_0045567 3300044765 Bacteria 2336
92 Ga0466970_0048307 3300044765 Bacteria 2269
93 Ga0466960_0009964 3300044901 Bacteria 3934
94 Ga0451576_0543653 3300045051 Bacteria 1220
95 Ga0495627_000128 3300046453 Bacteria 92036
96 Ga0495603_0000486 3300046455 Bacteria 22002
97 Ga0495603_0008900 3300046455 Bacteria 6070
98 Ga0495629_0001825 3300046459 Bacteria 16672
99 Ga0495629_0010800 3300046459 Bacteria 6643
100 Ga0495638_0001639 3300046460 Bacteria 19864
101 Ga0495594_0000264 3300046499 Bacteria 25699
102 Ga0495654_0032629 3300046530 Bacteria 2639
103 Ga0495597_0013852 3300046542 Bacteria 3854
104 Ga0495622_0013090 3300046557 Bacteria 3850
105 Ga0495622_0015472 3300046557 Bacteria 3546
106 Ga0495611_0018104 3300046648 Bacteria 3019
107 Ga0495613_0006402 3300046689 Bacteria 8798
108 Ga0495589_0000040 3300046794 Bacteria 140801
109 Ga0495604_0032610 3300047317 Bacteria 4128
110 Ga0495676_0002210 3300047321 Bacteria 17230
111 Ga0495676_0002693 3300047321 Bacteria 15921
112 Ga0495593_0132800 3300047673 Bacteria 1263
113 Ga0495614_0006234 3300048089 Bacteria 5360
114 Ga0496100_0130253 3300048903 Bacteria 1771
115 Ga0496101_0174274 3300048904 Bacteria 1654
116 Ga0496102_0016959 3300048905 Bacteria 6373
117 Ga0496104_0172750 3300048907 Bacteria 2072
118 Ga0496104_0505665 3300048907 Bacteria 1119
119 Ga0496106_0021866 3300048909 Bacteria 4751
120 Ga0496106_0040993 3300048909 Bacteria 3469
121 Ga0496110_0011753 3300048913 Bacteria 7184
122 Ga0496114_0011888 3300048917 Bacteria 6966
123 Ga0496114_0149979 3300048917 Bacteria 2022
124 Ga0496114_0423053 3300048917 Bacteria 1180
125 Ga0496116_0000007 3300048919 Bacteria 795464
126 Ga0496117_0000422 3300048920 Bacteria 71421
127 Ga0496117_0008090 3300048920 Bacteria 10070
128 Ga0496117_0013848 3300048920 Bacteria 6996
129 Ga0496118_0002052 3300048921 Bacteria 28436
130 Ga0496118_0006804 3300048921 Bacteria 12414
131 Ga0496119_0000130 3300048922 Bacteria 106433
132 Ga0496119_0007273 3300048922 Bacteria 10014
133 Ga0496119_0016322 3300048922 Bacteria 5658
134 Ga0496119_0033945 3300048922 Bacteria 3371
135 Ga0496120_0002261 3300048923 Bacteria 20045
136 Ga0496120_0002265 3300048923 Bacteria 20038
137 Ga0496120_0006788 3300048923 Bacteria 8678
138 Ga0496120_0097278 3300048923 Bacteria 1562
139 Ga0496121_0039312 3300048924 Bacteria 4172
140 Ga0496123_0002092 3300048926 Bacteria 25681
141 Ga0496123_0134399 3300048926 Bacteria 1364
142 Ga0496124_0000049 3300048927 Bacteria 269753
143 Ga0496124_0006635 3300048927 Bacteria 12557
144 Ga0496124_0006800 3300048927 Bacteria 12348
145 Ga0496124_0068544 3300048927 Bacteria 2948
146 Ga0496125_0068243 3300048928 Bacteria 2798
147 Ga0496125_0090388 3300048928 Bacteria 2298
148 Ga0496126_0031644 3300048929 Bacteria 4993
149 Ga0501031_0138093 3300049568 Bacteria 1593
150 Ga0501032_0027262 3300049569 Bacteria 3926
151 Ga0501034_0004821 3300049571 Bacteria 14905
152 Ga0501034_0033691 3300049571 Bacteria 5193
153 Ga0501036_0003555 3300049572 Bacteria 12461
154 Ga0501036_0028676 3300049572 Bacteria 4704
155 Ga0501038_0001339 3300049574 Bacteria 22423
156 Ga0501038_0176056 3300049574 Bacteria 1729
157 Ga0501039_0060536 3300049575 Bacteria 2933
158 Ga0501041_0094032 3300049577 Bacteria 1851
159 Ga0501042_0055501 3300049578 Bacteria 2827
160 Ga0501043_0000704 3300049579 Bacteria 29637
161 Ga0501046_0090204 3300049580 Bacteria 2358
162 Ga0501047_0010273 3300049581 Bacteria 8856
163 Ga0501047_0055572 3300049581 Bacteria 3828
164 Ga0501048_0002844 3300049582 Bacteria 13219
165 Ga0501048_0004832 3300049582 Bacteria 10274
166 Ga0501067_0011199 3300049583 Bacteria 4963
167 Ga0501072_0023072 3300049588 Bacteria 4831
168 Ga0501073_0013510 3300049589 Bacteria 5938
169 Ga0501074_0018279 3300049590 Bacteria 5093
170 Ga0501079_0494417 3300049741 Bacteria 961
171 Ga0501044_0007462 3300049823 Bacteria 12027
172 nmdc:mga0rr50_352355_c1 3300050513 Bacteria 1238
173 Ga0495655_0048955 3300053083 Bacteria 1111
174 Ga0500560_002059 3300053107 Bacteria 3732
175 Ga0500659_0000844 3300053135 Bacteria 19534
176 Ga0500573_0007979 3300053140 Bacteria 5812
177 Ga0501082_0061891 3300060353 Bacteria 3221
178 Ga0530510_0474199 3300061734 Bacteria 947

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049741 Ga0501079_0494417 Ga0501079_0494417_27_932 267
2 3300061734 Ga0530510_0474199 Ga0530510_0474199_16_921 267
3 3300048917 Ga0496114_0423053 Ga0496114_0423053_21_920 269
4 3300031456 Ga0307513_10090028 Ga0307513_100900283 270
5 3300044658 Ga0466972_0137596 Ga0466972_0137596_251_1126 270
6 3300041512 Ga0451853_1404469 Ga0451853_1404469_1407_2288 274
7 3300048922 Ga0496119_0016322 Ga0496119_0016322_1546_2424 275
8 3300048923 Ga0496120_0002261 Ga0496120_0002261_3235_4113 275
9 3300026067 Ga0207678_10289136 Ga0207678_102891361 276
10 3300030522 Ga0307512_10017859 Ga0307512_100178595 277
11 3300025256 Ga0209759_1003251 Ga0209759_10032514 278
12 3300046648 Ga0495611_0018104 Ga0495611_0018104_903_1796 280
13 3300049569 Ga0501032_0027262 Ga0501032_0027262_954_1898 280
14 3300049577 Ga0501041_0094032 Ga0501041_0094032_629_1573 280
15 3300049580 Ga0501046_0090204 Ga0501046_0090204_1069_2013 280
16 3300049583 Ga0501067_0011199 Ga0501067_0011199_3400_4344 280
17 3300049588 Ga0501072_0023072 Ga0501072_0023072_825_1769 280
18 3300060353 Ga0501082_0061891 Ga0501082_0061891_1408_2352 280
19 iso_pu_bacteria 2643221604 2644031959 281
20 iso_pu_bacteria 2582581312 2585299557 282
21 iso_pu_bacteria 2616644941 2616900959 282
22 iso_pu_bacteria 2643221578 2643901356 282
23 iso_pu_bacteria 2643221617 2644100357 282
24 iso_pu_bacteria 2643221620 2644116764 282
25 iso_pu_bacteria 2643221673 2644407500 282
26 iso_pu_bacteria 2738543011 2739240631 282
27 iso_pu_bacteria 2791355406 2793978940 282
28 3300009011 Ga0105251_10003941 Ga0105251_100039418 283
29 3300009092 Ga0105250_10003168 Ga0105250_100031682 283
30 3300009101 Ga0105247_10000048 Ga0105247_10000048129 283
31 3300017792 Ga0163161_10000005 Ga0163161_10000005275 283
32 3300025711 Ga0207696_1000039 Ga0207696_100003915 283
33 3300025735 Ga0207713_1000086 Ga0207713_100008615 283
34 3300025900 Ga0207710_10000026 Ga0207710_1000002615 283
35 3300046453 Ga0495627_000128 Ga0495627_000128_75307_76185 283
36 3300048907 Ga0496104_0172750 Ga0496104_0172750_1100_1978 283
37 3300048919 Ga0496116_0000007 Ga0496116_0000007_778802_779680 283
38 3300048920 Ga0496117_0000422 Ga0496117_0000422_54759_55637 283
39 3300048921 Ga0496118_0002052 Ga0496118_0002052_11065_11943 283
40 3300048922 Ga0496119_0033945 Ga0496119_0033945_147_1025 283
41 3300048923 Ga0496120_0097278 Ga0496120_0097278_323_1201 283
42 3300044765 Ga0466970_0037788 Ga0466970_0037788_1369_2283 284
43 3300003578 Ga0006562J51391_1192842 Ga0006562J51391_11928422 285
44 3300003578 Ga0006562J51391_1192843 Ga0006562J51391_11928432 285
45 3300005437 Ga0070710_10001903 Ga0070710_100019039 286
46 3300005455 Ga0070663_100055592 Ga0070663_1000555923 286
47 3300005563 Ga0068855_100001772 Ga0068855_10000177219 286
48 3300005614 Ga0068856_100058348 Ga0068856_1000583484 286
49 3300006163 Ga0070715_10104915 Ga0070715_101049151 286
50 3300025302 Ga0207426_1003584 Ga0207426_10035844 286
51 3300025302 Ga0207426_1007582 Ga0207426_10075822 286
52 3300025898 Ga0207692_10000143 Ga0207692_1000014324 286
53 3300025913 Ga0207695_10001237 Ga0207695_1000123719 286
54 3300025914 Ga0207671_10000470 Ga0207671_100004703 286
55 3300025924 Ga0207694_10000512 Ga0207694_1000051211 286
56 3300025935 Ga0207709_10099927 Ga0207709_100999272 286
57 3300025981 Ga0207640_10020618 Ga0207640_100206184 286
58 3300026067 Ga0207678_10077308 Ga0207678_100773082 286
59 3300026078 Ga0207702_10556467 Ga0207702_105564672 286
60 3300031901 Ga0307406_10057542 Ga0307406_100575422 286
61 3300031995 Ga0307409_100064667 Ga0307409_1000646671 286
62 3300032126 Ga0307415_100034440 Ga0307415_1000344404 286
63 3300044658 Ga0466972_0029846 Ga0466972_0029846_1013_1873 286
64 3300044683 Ga0466965_0085750 Ga0466965_0085750_514_1374 286
65 3300044735 Ga0466968_0006826 Ga0466968_0006826_2053_2913 286
66 3300044901 Ga0466960_0009964 Ga0466960_0009964_641_1501 286
67 3300047317 Ga0495604_0032610 Ga0495604_0032610_2344_3252 286
68 iso_pu_bacteria 2506520007 2506580019 286
69 iso_pu_bacteria 2506520008 2506585158 286
70 iso_pu_bacteria 2508501071 2508853818 286
71 iso_pu_bacteria 2511231024 2511374422 286
72 iso_pu_bacteria 2554235231 2555246397 286
73 iso_pu_bacteria 2654587920 2656277065 286
74 iso_pu_bacteria 2687453601 2689446561 286
75 iso_pu_bacteria 2765235841 2765585334 286
76 iso_pu_bacteria 2772190666 2772440466 286
77 iso_pu_bacteria 2806310673 2807177387 286
78 iso_pu_bacteria 2806310737 2807407302 286
79 iso_pu_bacteria 2806310745 2807455631 286
80 iso_pu_bacteria 2869551831 2869555913 286
81 iso_pu_bacteria 2873151551 2873158769 286
82 iso_pu_bacteria 2888366609 2888370546 286
83 iso_pu_bacteria 2912963787 2912967579 286
84 iso_pu_bacteria 2919155634 2919157420 286
85 iso_pu_bacteria 2937967321 2937969043 286
86 iso_pu_bacteria 2939651529 2939653089 286
87 iso_pu_bacteria 3007419365 3007424295 286
88 iso_pu_bacteria 3007803356 3007805110 286
89 iso_pu_bacteria 3007872151 3007872319 286
90 iso_pu_bacteria 640753048 640939289 286
91 iso_pu_bacteria 8004592986 8004594746 286
92 iso_pu_bacteria 8015394850 8015399207 286
93 iso_pu_bacteria 8052494512 8052496043 286
94 iso_pu_bacteria 8054929484 8054930897 286
95 iso_pu_bacteria 8055878733 8055878812 286
96 iso_pu_bacteria 8056115690 8056117769 286
97 iso_pu_bacteria 8056120720 8056124556 286
98 iso_pu_bacteria 8056137416 8056138955 286
99 iso_pu_bacteria 2791354901 2791912983 287
100 iso_pu_bacteria 2867475112 2867480684 287
101 iso_pu_bacteria 2889300758 2889304900 287
102 iso_pu_bacteria 2912757875 2912758328 287
103 iso_pu_bacteria 2919713450 2919714175 287
104 iso_pu_bacteria 2939743619 2939746500 287
105 iso_pu_bacteria 2946045630 2946046110 287
106 iso_pu_bacteria 2997451912 2997454540 287
107 iso_pu_bacteria 3002998708 3003000933 287
108 iso_pu_bacteria 3006321560 3006322943 287
109 iso_pu_bacteria 8025530807 8025533300 287
110 iso_pu_bacteria 8047893842 8047895136 287
111 iso_pu_bacteria 8048127548 8048137237 287
112 iso_pu_bacteria 8048356638 8048363914 287
113 iso_pu_bacteria 8048369669 8048372162 287
114 iso_pu_bacteria 8048379754 8048381096 287
115 iso_pu_bacteria 8053945823 8053946067 287
116 iso_pu_bacteria 8056060235 8056061064 287
117 iso_pu_bacteria 8056207758 8056209989 287
118 3300053107 Ga0500560_002059 Ga0500560_002059_1561_2511 288
119 3300053140 Ga0500573_0007979 Ga0500573_0007979_3743_4693 288
120 3300005548 Ga0070665_100521227 Ga0070665_1005212271 290
121 3300006944 Ga0099823_1003594 Ga0099823_100359413 290
122 3300006946 Ga0079104_1005602 Ga0079104_10056026 290
123 3300009011 Ga0105251_10000125 Ga0105251_1000012583 290
124 3300009011 Ga0105251_10000263 Ga0105251_1000026316 290
125 3300009011 Ga0105251_10000299 Ga0105251_100002997 290
126 3300009011 Ga0105251_10059677 Ga0105251_100596772 290
127 3300009011 Ga0105251_10089466 Ga0105251_100894662 290
128 3300009036 Ga0105244_10000031 Ga0105244_10000031155 290
129 3300009036 Ga0105244_10003616 Ga0105244_100036167 290
130 3300009036 Ga0105244_10004567 Ga0105244_100045675 290
131 3300009036 Ga0105244_10005520 Ga0105244_100055205 290
132 3300009101 Ga0105247_10013487 Ga0105247_100134875 290
133 3300009174 Ga0105241_10000103 Ga0105241_1000010316 290
134 3300009177 Ga0105248_10141342 Ga0105248_101413422 290
135 3300013100 Ga0157373_10002539 Ga0157373_1000253913 290
136 3300013104 Ga0157370_10003691 Ga0157370_100036916 290
137 3300013104 Ga0157370_10306166 Ga0157370_103061662 290
138 3300013307 Ga0157372_10003188 Ga0157372_100031889 290
139 3300014497 Ga0182008_10001134 Ga0182008_1000113413 290
140 3300025711 Ga0207696_1025478 Ga0207696_10254782 290
141 3300025728 Ga0207655_1000029 Ga0207655_100002914 290
142 3300025728 Ga0207655_1000078 Ga0207655_1000078189 290
143 3300025728 Ga0207655_1000553 Ga0207655_100055324 290
144 3300025728 Ga0207655_1000614 Ga0207655_100061430 290
145 3300025735 Ga0207713_1000333 Ga0207713_100033316 290
146 3300025735 Ga0207713_1001302 Ga0207713_100130214 290
147 3300025735 Ga0207713_1006535 Ga0207713_10065355 290
148 3300025911 Ga0207654_10000091 Ga0207654_1000009150 290
149 3300025916 Ga0207663_10206910 Ga0207663_102069102 290
150 3300027111 Ga0209281_1000413 Ga0209281_100041316 290
151 3300027296 Ga0209389_1000037 Ga0209389_10000375 290
152 3300042006 Ga0439432_000261 Ga0439432_000261_561_1445 290
153 3300042006 Ga0439432_008141 Ga0439432_008141_697_1575 290
154 3300042013 Ga0439456_000011 Ga0439456_000011_8574_9461 290
155 3300042136 Ga0450900_000292 Ga0450900_000292_1270_2154 290
156 3300042137 Ga0450902_008991 Ga0450902_008991_226_1098 290
157 3300042142 Ga0450905_000102 Ga0450905_000102_3908_4780 290
158 3300042533 Ga0450901_000168 Ga0450901_000168_2708_3580 290
159 3300046530 Ga0495654_0032629 Ga0495654_0032629_418_1296 290
160 3300046542 Ga0495597_0013852 Ga0495597_0013852_243_1130 290
161 3300046794 Ga0495589_0000040 Ga0495589_0000040_123410_124288 290
162 3300048903 Ga0496100_0130253 Ga0496100_0130253_506_1399 290
163 3300048904 Ga0496101_0174274 Ga0496101_0174274_221_1114 290
164 3300048905 Ga0496102_0016959 Ga0496102_0016959_4140_5033 290
165 3300048907 Ga0496104_0505665 Ga0496104_0505665_200_1093 290
166 3300048909 Ga0496106_0021866 Ga0496106_0021866_714_1607 290
167 3300048913 Ga0496110_0011753 Ga0496110_0011753_1703_2584 290
168 3300048917 Ga0496114_0011888 Ga0496114_0011888_4138_5016 290
169 3300048917 Ga0496114_0149979 Ga0496114_0149979_20_901 290
170 3300048920 Ga0496117_0008090 Ga0496117_0008090_7190_8071 290
171 3300048920 Ga0496117_0013848 Ga0496117_0013848_3312_4190 290
172 3300048921 Ga0496118_0006804 Ga0496118_0006804_4383_5264 290
173 3300048922 Ga0496119_0000130 Ga0496119_0000130_22572_23462 290
174 3300048922 Ga0496119_0007273 Ga0496119_0007273_5902_6780 290
175 3300048923 Ga0496120_0002265 Ga0496120_0002265_15926_16804 290
176 3300048923 Ga0496120_0006788 Ga0496120_0006788_3665_4555 290
177 3300048924 Ga0496121_0039312 Ga0496121_0039312_1372_2256 290
178 3300048926 Ga0496123_0002092 Ga0496123_0002092_1859_2740 290
179 3300048926 Ga0496123_0134399 Ga0496123_0134399_320_1201 290
180 3300048927 Ga0496124_0000049 Ga0496124_0000049_252950_253828 290
181 3300048927 Ga0496124_0006635 Ga0496124_0006635_7320_8201 290
182 3300048927 Ga0496124_0006800 Ga0496124_0006800_7152_8033 290
183 3300048927 Ga0496124_0068544 Ga0496124_0068544_160_1038 290
184 3300048928 Ga0496125_0068243 Ga0496125_0068243_202_1083 290
185 3300048928 Ga0496125_0090388 Ga0496125_0090388_1315_2202 290
186 3300048929 Ga0496126_0031644 Ga0496126_0031644_2847_3728 290
187 3300049571 Ga0501034_0004821 Ga0501034_0004821_9523_10401 290
188 3300049572 Ga0501036_0028676 Ga0501036_0028676_1594_2550 290
189 3300053135 Ga0500659_0000844 Ga0500659_0000844_9522_10406 290
190 iso_pu_bacteria 2808606448 2809232913 290
191 3300007076 Ga0075435_100099837 Ga0075435_1000998372 291
192 3300014497 Ga0182008_10000152 Ga0182008_1000015223 291
193 3300015261 Ga0182006_1020230 Ga0182006_10202303 291
194 3300015262 Ga0182007_10003974 Ga0182007_100039744 291
195 3300025942 Ga0207689_10256907 Ga0207689_102569071 291
196 3300026095 Ga0207676_10376247 Ga0207676_103762471 291
197 3300044683 Ga0466965_0015285 Ga0466965_0015285_1459_2346 291
198 3300044683 Ga0466965_0033817 Ga0466965_0033817_1452_2339 291
199 3300044765 Ga0466970_0045567 Ga0466970_0045567_1234_2115 291
200 3300045051 Ga0451576_0543653 Ga0451576_0543653_194_1090 291
201 3300049571 Ga0501034_0033691 Ga0501034_0033691_1895_2800 291
202 3300049572 Ga0501036_0003555 Ga0501036_0003555_1580_2485 291
203 3300049574 Ga0501038_0001339 Ga0501038_0001339_17004_17909 291
204 3300049575 Ga0501039_0060536 Ga0501039_0060536_1365_2270 291
205 3300049578 Ga0501042_0055501 Ga0501042_0055501_1624_2529 291
206 3300049579 Ga0501043_0000704 Ga0501043_0000704_5181_6086 291
207 3300049582 Ga0501048_0004832 Ga0501048_0004832_8307_9212 291
208 3300049589 Ga0501073_0013510 Ga0501073_0013510_2867_3772 291
209 3300049590 Ga0501074_0018279 Ga0501074_0018279_993_1898 291
210 3300049823 Ga0501044_0007462 Ga0501044_0007462_8983_9888 291
211 3300050513 nmdc:mga0rr50_352355_c1 nmdc:mga0rr50_352355_c1_266_1174 291
212 3300053083 Ga0495655_0048955 Ga0495655_0048955_202_1095 291
213 3300046460 Ga0495638_0001639 Ga0495638_0001639_9235_10134 292
214 3300046455 Ga0495603_0008900 Ga0495603_0008900_1258_2190 293
215 3300046459 Ga0495629_0001825 Ga0495629_0001825_4977_5909 293
216 3300046499 Ga0495594_0000264 Ga0495594_0000264_10499_11431 293
217 3300046557 Ga0495622_0013090 Ga0495622_0013090_1907_2839 293
218 3300047321 Ga0495676_0002693 Ga0495676_0002693_4142_5074 293
219 3300044765 Ga0466970_0048307 Ga0466970_0048307_831_1718 294
220 3300046455 Ga0495603_0000486 Ga0495603_0000486_1090_2025 294
221 3300046459 Ga0495629_0010800 Ga0495629_0010800_3640_4575 294
222 3300046689 Ga0495613_0006402 Ga0495613_0006402_220_1155 294
223 3300047321 Ga0495676_0002210 Ga0495676_0002210_14069_15004 294
224 3300047673 Ga0495593_0132800 Ga0495593_0132800_272_1207 294
225 3300048089 Ga0495614_0006234 Ga0495614_0006234_933_1868 294
226 3300049581 Ga0501047_0055572 Ga0501047_0055572_690_1625 298
227 iso_pu_bacteria 2816332139 2816504303 300
228 iso_pu_bacteria 2995463766 2995463871 300
229 iso_pu_bacteria 8003870546 8003873239 300
230 iso_pu_bacteria 8054160619 8054162601 300
231 iso_pu_bacteria 8056207758 8056212535 300
232 3300003323 rootH1_10174672 rootH1_101746721 304
233 3300005539 Ga0068853_100051559 Ga0068853_1000515593 304
234 3300009093 Ga0105240_10009395 Ga0105240_1000939510 304
235 3300009174 Ga0105241_10000544 Ga0105241_100005446 304
236 3300009551 Ga0105238_10002217 Ga0105238_1000221710 304
237 3300013296 Ga0157374_10060065 Ga0157374_100600653 304
238 3300046557 Ga0495622_0015472 Ga0495622_0015472_772_1686 304
239 3300048909 Ga0496106_0040993 Ga0496106_0040993_496_1431 304
240 3300049568 Ga0501031_0138093 Ga0501031_0138093_210_1124 304
241 3300049574 Ga0501038_0176056 Ga0501038_0176056_126_1082 304
242 3300049581 Ga0501047_0010273 Ga0501047_0010273_4431_5345 304
243 3300049582 Ga0501048_0002844 Ga0501048_0002844_6630_7544 304

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

1

58

0.99

PF03466

LysR_substrate

LysR substrate binding domain

83

283

0.97

PF13531

SBP_bac_11

Bacterial extracellular solute-binding protein

94

290

0.72

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ihs-assembly3.cif.gz_C crystal structure of benm_dbd/catb site 1 dna complex 0.9402 14 100
4ihs-assembly1.cif.gz_A crystal structure of benm_dbd/catb site 1 dna complex 0.9398 14 100
5xxp-assembly1.cif.gz_B crystal structure of cbnr_dbd-dna complex 0.9273 14 99
4iht-assembly2.cif.gz_C crystal structure of benm_dbd/bena site 1 dna complex 0.919 14 98
4iht-assembly1.cif.gz_A crystal structure of benm_dbd/bena site 1 dna complex 0.9159 14 100
ID Description Score Start End Superfamily
af_P37641_3_87_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9834 15 86 1.10.10.10
af_Q47141_1_83_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9782 14 95 1.10.10.10
af_Q2FVT4_1_85_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9747 14 95 1.10.10.10
af_P52696_4_93_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.973 15 100 1.10.10.10
af_P37682_6_92_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9709 14 99 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A4Q5W9K1-F1-model_v4 deleted 0.8746 106 299
AF-A0A3S4ENQ8-F1-model_v4 deleted 0.8667 158 299
AF-A0A2T0M1Y4-F1-model_v4 DNA-binding transcriptional LysR family regulator 0.8616 14 301 GO:0003677
GO:0003700
GO:0005829
AF-A0A529FJL8-F1-model_v4 LysR family transcriptional regulator 0.8592 175 297 GO:0005829
GO:0006355
AF-A0A645EH23-F1-model_v4 HTH-type transcriptional regulator GltC 0.8546 146 304 GO:0003677
GO:0005829
GO:0006355

Feature Viewer

pLDDT pTM Quality
89.2 0.77 High
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Predicted Structure (AlphaFold2)

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