F354996

General Info

Members Datasets Scaffolds Average Seq Length
242 168 484 407

Family's Representative Sequence

Representative Sequence 3300047443|Ga0495687_000170|Ga0495687_000170_69649_71040
Length 463
Sequence VDTSLSFFSLRPQHFVCIDDVEAFISHSERKVATQHFSTWHGCRVKRANDRDTAMSPLDTLPTATVTTGLELLKGVRVLDLTTSIAGPYGTQLLADLGAEVTKVERIGAGDDTRAWGPPFLDGESLWFLSINRNKESLTLDIKQPEGRHILDQLLALTDVIVVNVVRDVQRRLGLDFESLKTRYPTLIHVALTGFGSHGSRANLPCYDLIAEGYSGVMDLTGEKESGPQKVGTPAADLLAGQDVALATVAALFERQRTGRGKSIDVSMVASMVRFMAPRVVPYLGSGERVTRSGGRDSVIAIYQVFETADEPITLALGNDAIWQRFWTAVGKPEYGATASLATNANRRAQRESIVEAIQSLLATRERQYWLALFNDNRIPAGPINRVDQVVQDEHLLSEGLFYSVEGVGGKVPQVGLGIRFDGKSEVHRRAPPGLGADTQRVLRERLGMSDVCIAGLKDRQII

Samples

Sample ID Description Type Environment
1 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
2 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
3 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
4 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
5 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
9 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
10 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
15 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
16 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
17 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
18 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
19 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
20 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
21 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
22 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
25 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
30 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
31 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
32 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
34 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
35 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
36 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
37 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
38 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
39 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
42 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
43 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
44 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
45 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
46 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
47 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
48 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
49 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
50 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
51 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
52 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
53 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
54 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
80 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
81 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
82 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
83 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
84 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
85 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
86 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
87 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
88 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
89 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
90 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
91 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
92 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
93 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
94 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
95 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
96 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
97 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
98 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
99 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
100 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
101 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
102 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
103 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
104 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
105 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
106 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
107 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
108 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
109 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
110 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
111 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
112 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
113 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
114 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
115 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
116 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
117 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
118 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
119 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
120 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
121 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
122 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
123 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
124 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
125 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
126 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
127 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
128 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
129 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
130 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
131 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
132 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
133 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
134 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
135 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
136 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
137 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
138 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
139 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
140 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
141 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
142 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
143 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
144 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
145 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
146 3300048986 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1E Metagenome Unclassified
147 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
148 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
149 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
150 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
151 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
152 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
153 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
154 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
155 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
156 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
157 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
158 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
159 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
160 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
161 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
162 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
163 2643221603 Noviherbaspirillum sp. Root189 Isolate Unclassified
164 2791355137 Paraburkholderia piptadeniae STM7183 Isolate Unclassified
165 2889914905 Chelativorans alearense UJN715 Isolate Rhizosphere
166 2900634093 Paraburkholderia dipogonis ICMP 19430 Isolate Unclassified
167 8039098773 Burkholderia multivorans MSMB612WGS Isolate Unclassified
168 8054472261 Pseudonocardia terrae RS11V-5 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.69
Metatranscriptomes 0
Isolates 3.31

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.89
Nodule 1.24
Rhizoplane 1.24
Rhizosphere 88.84
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495687_000170 3300047443 Bacteria 96886
2 JGI24751J29686_10000292 3300002459 Bacteria 19047
3 Ga0055526_1001091 3300003771 Bacteria 19781
4 Ga0055534_1000434 3300003784 Bacteria 24859
5 Ga0065712_10077002 3300005290 Bacteria 3548
6 Ga0070683_100010694 3300005329 Bacteria 7890
7 Ga0070670_100007175 3300005331 Bacteria 9437
8 Ga0070670_100177933 3300005331 Bacteria 1846
9 Ga0070666_10025998 3300005335 Bacteria 3820
10 Ga0068868_100007061 3300005338 Bacteria 7982
11 Ga0070687_100102338 3300005343 Bacteria 1606
12 Ga0070668_100167931 3300005347 Bacteria 1785
13 Ga0070669_100004445 3300005353 Bacteria 10109
14 Ga0070675_100100867 3300005354 Bacteria 2431
15 Ga0070675_100195017 3300005354 Bacteria 1756
16 Ga0070671_100013170 3300005355 Bacteria 6661
17 Ga0070671_100030031 3300005355 Bacteria 4484
18 Ga0070674_100136847 3300005356 Bacteria 1833
19 Ga0070673_100049743 3300005364 Bacteria 3274
20 Ga0070673_100088234 3300005364 Bacteria 2529
21 Ga0070673_100242528 3300005364 Bacteria 1568
22 Ga0070678_100006543 3300005456 Bacteria 6843
23 Ga0070685_10062885 3300005466 Bacteria 2178
24 Ga0070706_100055268 3300005467 Bacteria 3664
25 Ga0070684_100015167 3300005535 Bacteria 6267
26 Ga0070672_100017786 3300005543 Bacteria 5123
27 Ga0070686_100040214 3300005544 Bacteria 2916
28 Ga0068855_100118845 3300005563 Bacteria 3027
29 Ga0070664_100053947 3300005564 Bacteria 3409
30 Ga0068854_100019683 3300005578 Bacteria 4553
31 Ga0068852_100006409 3300005616 Bacteria 8503
32 Ga0068859_100107006 3300005617 Bacteria 2856
33 Ga0068864_100051453 3300005618 Bacteria 3549
34 Ga0068864_100202215 3300005618 Bacteria 1825
35 Ga0068858_100044182 3300005842 Bacteria 4131
36 Ga0068858_100093859 3300005842 Bacteria 2794
37 Ga0075364_10002318 3300006051 Bacteria 10675
38 Ga0070715_10035127 3300006163 Bacteria 2060
39 Ga0097621_100078905 3300006237 Bacteria 2736
40 Ga0068871_100101710 3300006358 Bacteria 2408
41 Ga0075431_100028453 3300006847 Bacteria 5744
42 Ga0075434_100089070 3300006871 Bacteria 3088
43 Ga0097620_100106998 3300006931 Bacteria 2856
44 Ga0099823_1008331 3300006944 Bacteria 10553
45 Ga0105245_10196013 3300009098 Bacteria 1937
46 Ga0105243_10084804 3300009148 Bacteria 2595
47 Ga0105248_10033081 3300009177 Bacteria 5775
48 Ga0157374_10011741 3300013296 Bacteria 7599
49 Ga0157378_10063742 3300013297 Bacteria 3294
50 Ga0157378_10131968 3300013297 Bacteria 2313
51 Ga0163162_10008575 3300013306 Bacteria 9963
52 Ga0163162_10040101 3300013306 Bacteria 4681
53 Ga0157375_10015007 3300013308 Bacteria 6928
54 Ga0157375_10075649 3300013308 Bacteria 3392
55 Ga0163163_10163953 3300014325 Bacteria 2268
56 Ga0157380_10029568 3300014326 Bacteria 4188
57 Ga0157380_10174986 3300014326 Bacteria 1879
58 Ga0157377_10144676 3300014745 Bacteria 1464
59 Ga0157379_10084998 3300014968 Bacteria 2835
60 Ga0157376_10028237 3300014969 Bacteria 4458
61 Ga0157376_10043741 3300014969 Bacteria 3676
62 Ga0163161_10100696 3300017792 Bacteria 2150
63 Ga0209759_1001891 3300025256 Bacteria 10312
64 Ga0209675_1000090 3300025291 Bacteria 146665
65 Ga0209564_1000985 3300025295 Bacteria 35696
66 Ga0207697_10002937 3300025315 Bacteria 8608
67 Ga0207688_10052153 3300025901 Bacteria 2292
68 Ga0207680_10049143 3300025903 Bacteria 2509
69 Ga0207645_10012696 3300025907 Bacteria 5712
70 Ga0207684_10106768 3300025910 Bacteria 2395
71 Ga0207662_10030467 3300025918 Bacteria 3131
72 Ga0207681_10003179 3300025923 Bacteria 10314
73 Ga0207650_10248598 3300025925 Bacteria 1439
74 Ga0207659_10003404 3300025926 Bacteria 9536
75 Ga0207644_10010550 3300025931 Bacteria 6090
76 Ga0207644_10026162 3300025931 Bacteria 4018
77 Ga0207644_10150824 3300025931 Bacteria 1798
78 Ga0207706_10096607 3300025933 Bacteria 2598
79 Ga0207686_10205535 3300025934 Bacteria 1413
80 Ga0207670_10058757 3300025936 Bacteria 2613
81 Ga0207691_10019372 3300025940 Bacteria 6438
82 Ga0207691_10179837 3300025940 Bacteria 1849
83 Ga0207711_10051848 3300025941 Bacteria 3515
84 Ga0207689_10043498 3300025942 Bacteria 3713
85 Ga0207651_10145441 3300025960 Bacteria 1837
86 Ga0207640_10070454 3300025981 Bacteria 2352
87 Ga0207658_10100425 3300025986 Bacteria 2265
88 Ga0207708_10034100 3300026075 Bacteria 3870
89 Ga0207641_10061205 3300026088 Bacteria 3210
90 Ga0207641_10197797 3300026088 Bacteria 1851
91 Ga0207648_10051313 3300026089 Bacteria 3605
92 Ga0207648_10094129 3300026089 Bacteria 2619
93 Ga0207676_10039320 3300026095 Bacteria 3617
94 Ga0207675_100064686 3300026118 Bacteria 3419
95 Ga0207683_10004517 3300026121 Bacteria 12005
96 Ga0207683_10013977 3300026121 Bacteria 6846
97 Ga0207683_10042203 3300026121 Bacteria 3984
98 Ga0209389_1000004 3300027296 Bacteria 263759
99 Ga0209489_100172 3300027361 Bacteria 100396
100 Ga0307517_10010425 3300028786 Bacteria 13004
101 Ga0265328_10001485 3300031239 Bacteria 10821
102 Ga0265316_10009185 3300031344 Bacteria 9107
103 Ga0265314_10001567 3300031711 Bacteria 25135
104 Ga0307409_100137768 3300031995 Bacteria 2098
105 Ga0307411_10031009 3300032005 Bacteria 3284
106 Ga0307510_10000001 3300033180 Bacteria 1172244
107 Ga0307510_10006484 3300033180 Bacteria 13961
108 Ga0395901_0079022 3300038443 Bacteria 3435
109 Ga0395901_0349190 3300038443 Bacteria 1527
110 Ga0439435_0024333 3300042436 Bacteria 1597
111 Ga0466969_0093968 3300044656 Bacteria 1418
112 Ga0466966_0001889 3300044684 Bacteria 13599
113 Ga0466970_0015956 3300044765 Bacteria 3866
114 Ga0451576_0345167 3300045051 Bacteria 1559
115 Ga0495603_0004918 3300046455 Bacteria 7994
116 Ga0495603_0058633 3300046455 Bacteria 2276
117 Ga0495591_005685 3300046458 Bacteria 5704
118 Ga0495629_0000295 3300046459 Bacteria 42788
119 Ga0495629_0002633 3300046459 Bacteria 13754
120 Ga0495629_0006634 3300046459 Bacteria 8566
121 Ga0495641_0004245 3300046461 Bacteria 10246
122 Ga0495653_0002839 3300046463 Bacteria 13828
123 Ga0495653_0137926 3300046463 Bacteria 1719
124 Ga0495650_0011049 3300046471 Bacteria 4983
125 Ga0495580_0000648 3300046472 Bacteria 29526
126 Ga0495580_0003800 3300046472 Bacteria 12795
127 Ga0495580_0008239 3300046472 Bacteria 8295
128 Ga0495580_0072210 3300046472 Bacteria 2410
129 Ga0495582_0000509 3300046473 Bacteria 21357
130 Ga0495582_0003374 3300046473 Bacteria 8987
131 Ga0495664_0001148 3300046477 Bacteria 13751
132 Ga0495594_0010291 3300046499 Bacteria 4849
133 Ga0495594_0124956 3300046499 Bacteria 1455
134 Ga0495594_0132099 3300046499 Bacteria 1414
135 Ga0495596_0003531 3300046500 Bacteria 7879
136 Ga0495583_0054058 3300046506 Bacteria 1820
137 Ga0495618_0000667 3300046514 Bacteria 24149
138 Ga0495618_0004706 3300046514 Bacteria 8346
139 Ga0495628_0001421 3300046516 Bacteria 21980
140 Ga0495628_0005056 3300046516 Bacteria 11595
141 Ga0495630_0000342 3300046517 Bacteria 36980
142 Ga0495630_0000517 3300046517 Bacteria 28431
143 Ga0495630_0000792 3300046517 Bacteria 22264
144 Ga0495630_0005670 3300046517 Bacteria 8825
145 Ga0495630_0199116 3300046517 Bacteria 1528
146 Ga0495648_0000850 3300046524 Bacteria 32199
147 Ga0495666_0000245 3300046526 Bacteria 23436
148 Ga0495666_0000536 3300046526 Bacteria 16875
149 Ga0495666_0001023 3300046526 Bacteria 13252
150 Ga0495666_0005707 3300046526 Bacteria 6273
151 Ga0495666_0011493 3300046526 Bacteria 4414
152 Ga0495652_0015694 3300046529 Bacteria 6778
153 Ga0495652_0088791 3300046529 Bacteria 2532
154 Ga0495665_0000068 3300046531 Bacteria 43382
155 Ga0495665_0000944 3300046531 Bacteria 15329
156 Ga0495665_0012725 3300046531 Bacteria 4553
157 Ga0495665_0041166 3300046531 Bacteria 2459
158 Ga0495640_0002005 3300046533 Bacteria 16243
159 Ga0495640_0043747 3300046533 Bacteria 3117
160 Ga0495586_0005474 3300046535 Bacteria 6790
161 Ga0495586_0005505 3300046535 Bacteria 6772
162 Ga0495586_0009328 3300046535 Bacteria 5220
163 Ga0495587_0006000 3300046536 Bacteria 7919
164 Ga0495645_0000515 3300046543 Bacteria 26684
165 Ga0495645_0002096 3300046543 Bacteria 13544
166 Ga0495656_0019579 3300046615 Bacteria 2614
167 Ga0495634_0000894 3300046642 Bacteria 28619
168 Ga0495634_0050752 3300046642 Bacteria 2784
169 Ga0495635_0004191 3300046663 Bacteria 10003
170 Ga0495661_0001567 3300046665 Bacteria 18833
171 Ga0495661_0008935 3300046665 Bacteria 6897
172 Ga0495599_0004542 3300046678 Bacteria 8231
173 Ga0495623_0025786 3300046679 Bacteria 3785
174 Ga0495646_0004046 3300046680 Bacteria 9195
175 Ga0495646_0006160 3300046680 Bacteria 7606
176 Ga0495669_0119778 3300046684 Bacteria 1233
177 Ga0495613_0007934 3300046689 Bacteria 7900
178 Ga0495624_0004814 3300046690 Bacteria 9816
179 Ga0495624_0017959 3300046690 Bacteria 4739
180 Ga0495624_0042403 3300046690 Bacteria 2907
181 Ga0495581_0000695 3300047315 Bacteria 17665
182 Ga0495581_0002167 3300047315 Bacteria 11088
183 Ga0495581_0008707 3300047315 Bacteria 5877
184 Ga0495604_0001617 3300047317 Bacteria 18571
185 Ga0495604_0009928 3300047317 Bacteria 7537
186 Ga0495604_0013647 3300047317 Bacteria 6479
187 Ga0495674_0000546 3300047319 Bacteria 34881
188 Ga0495674_0006229 3300047319 Bacteria 11445
189 Ga0495676_0003184 3300047321 Bacteria 14835
190 Ga0495676_0013335 3300047321 Bacteria 7384
191 Ga0495680_0003784 3300047322 Bacteria 14714
192 Ga0495680_0025451 3300047322 Bacteria 4897
193 Ga0495683_0070462 3300047323 Bacteria 1717
194 Ga0495675_0046409 3300047444 Bacteria 2766
195 Ga0495679_000230 3300047446 Bacteria 47184
196 Ga0495679_000266 3300047446 Bacteria 43582
197 Ga0495679_001936 3300047446 Bacteria 11055
198 Ga0495673_0004595 3300047469 Bacteria 8601
199 Ga0495681_0001812 3300047470 Bacteria 15710
200 Ga0495684_0012494 3300047471 Bacteria 6544
201 Ga0495593_0002567 3300047673 Bacteria 10909
202 Ga0495593_0011736 3300047673 Bacteria 5025
203 Ga0495602_0009105 3300048088 Bacteria 10336
204 Ga0495602_0076656 3300048088 Bacteria 2832
205 Ga0495602_0090068 3300048088 Bacteria 2549
206 Ga0495602_0113916 3300048088 Bacteria 2191
207 Ga0495614_0002782 3300048089 Bacteria 7776
208 Ga0495614_0003870 3300048089 Bacteria 6728
209 Ga0495614_0009816 3300048089 Bacteria 4228
210 Ga0496101_0020385 3300048904 Bacteria 4537
211 Ga0496109_0114635 3300048912 Bacteria 2507
212 Ga0496110_0029488 3300048913 Bacteria 4723
213 Ga0496121_0001460 3300048924 Bacteria 39925
214 Ga0496121_0164912 3300048924 Bacteria 1616
215 Ga0496125_0040142 3300048928 Bacteria 4018
216 Ga0466983_0062441 3300048986 Bacteria 3127
217 Ga0501033_0000427 3300049570 Bacteria 40245
218 Ga0501034_0000054 3300049571 Bacteria 206373
219 Ga0501036_0000031 3300049572 Bacteria 92249
220 Ga0501037_0000096 3300049573 Bacteria 81773
221 Ga0501037_0004290 3300049573 Bacteria 10344
222 Ga0501038_0000018 3300049574 Bacteria 155191
223 Ga0501039_0000018 3300049575 Bacteria 176187
224 Ga0501040_0034820 3300049576 Bacteria 3412
225 Ga0501043_0000014 3300049579 Bacteria 184687
226 Ga0501079_0144391 3300049741 Bacteria 1854
227 Ga0501081_0028947 3300049743 Bacteria 3740
228 Ga0501035_0000019 3300049822 Bacteria 241152
229 Ga0501035_0008829 3300049822 Bacteria 9380
230 Ga0501044_0003562 3300049823 Bacteria 17529
231 nmdc:mga09592_51949_c1 3300050508 Bacteria 3458
232 nmdc:mga06r32_12954_c1 3300050510 Bacteria 7540
233 Ga0500607_055722 3300053121 Bacteria 2089
234 Ga0500559_0004989 3300053136 Bacteria 6168
235 2644029541 2643221603 Bacteria 6147767
236 2644030882 2643221603 Bacteria 6147767
237 2792834515 2791355137 Bacteria 9654227
238 2889916913 2889914905 Bacteria 5702301
239 2900641497 2900634093 Bacteria 10263517
240 2900641513 2900634093 Bacteria 10263517
241 8039102185 8039098773 Bacteria 6602928
242 8054476543 8054472261 Bacteria 7464355
243 Ga0495687_000170
244 JGI24751J29686_10000292
245 Ga0055526_1001091
246 Ga0055534_1000434
247 Ga0065712_10077002
248 Ga0070683_100010694
249 Ga0070670_100007175
250 Ga0070670_100177933
251 Ga0070666_10025998
252 Ga0068868_100007061
253 Ga0070687_100102338
254 Ga0070668_100167931
255 Ga0070669_100004445
256 Ga0070675_100100867
257 Ga0070675_100195017
258 Ga0070671_100013170
259 Ga0070671_100030031
260 Ga0070674_100136847
261 Ga0070673_100049743
262 Ga0070673_100088234
263 Ga0070673_100242528
264 Ga0070678_100006543
265 Ga0070685_10062885
266 Ga0070706_100055268
267 Ga0070684_100015167
268 Ga0070672_100017786
269 Ga0070686_100040214
270 Ga0068855_100118845
271 Ga0070664_100053947
272 Ga0068854_100019683
273 Ga0068852_100006409
274 Ga0068859_100107006
275 Ga0068864_100051453
276 Ga0068864_100202215
277 Ga0068858_100044182
278 Ga0068858_100093859
279 Ga0075364_10002318
280 Ga0070715_10035127
281 Ga0097621_100078905
282 Ga0068871_100101710
283 Ga0075431_100028453
284 Ga0075434_100089070
285 Ga0097620_100106998
286 Ga0099823_1008331
287 Ga0105245_10196013
288 Ga0105243_10084804
289 Ga0105248_10033081
290 Ga0157374_10011741
291 Ga0157378_10063742
292 Ga0157378_10131968
293 Ga0163162_10008575
294 Ga0163162_10040101
295 Ga0157375_10015007
296 Ga0157375_10075649
297 Ga0163163_10163953
298 Ga0157380_10029568
299 Ga0157380_10174986
300 Ga0157377_10144676
301 Ga0157379_10084998
302 Ga0157376_10028237
303 Ga0157376_10043741
304 Ga0163161_10100696
305 Ga0209759_1001891
306 Ga0209675_1000090
307 Ga0209564_1000985
308 Ga0207697_10002937
309 Ga0207688_10052153
310 Ga0207680_10049143
311 Ga0207645_10012696
312 Ga0207684_10106768
313 Ga0207662_10030467
314 Ga0207681_10003179
315 Ga0207650_10248598
316 Ga0207659_10003404
317 Ga0207644_10010550
318 Ga0207644_10026162
319 Ga0207644_10150824
320 Ga0207706_10096607
321 Ga0207686_10205535
322 Ga0207670_10058757
323 Ga0207691_10019372
324 Ga0207691_10179837
325 Ga0207711_10051848
326 Ga0207689_10043498
327 Ga0207651_10145441
328 Ga0207640_10070454
329 Ga0207658_10100425
330 Ga0207708_10034100
331 Ga0207641_10061205
332 Ga0207641_10197797
333 Ga0207648_10051313
334 Ga0207648_10094129
335 Ga0207676_10039320
336 Ga0207675_100064686
337 Ga0207683_10004517
338 Ga0207683_10013977
339 Ga0207683_10042203
340 Ga0209389_1000004
341 Ga0209489_100172
342 Ga0307517_10010425
343 Ga0265328_10001485
344 Ga0265316_10009185
345 Ga0265314_10001567
346 Ga0307409_100137768
347 Ga0307411_10031009
348 Ga0307510_10000001
349 Ga0307510_10006484
350 Ga0395901_0079022
351 Ga0395901_0349190
352 Ga0439435_0024333
353 Ga0466969_0093968
354 Ga0466966_0001889
355 Ga0466970_0015956
356 Ga0451576_0345167
357 Ga0495603_0004918
358 Ga0495603_0058633
359 Ga0495591_005685
360 Ga0495629_0000295
361 Ga0495629_0002633
362 Ga0495629_0006634
363 Ga0495641_0004245
364 Ga0495653_0002839
365 Ga0495653_0137926
366 Ga0495650_0011049
367 Ga0495580_0000648
368 Ga0495580_0003800
369 Ga0495580_0008239
370 Ga0495580_0072210
371 Ga0495582_0000509
372 Ga0495582_0003374
373 Ga0495664_0001148
374 Ga0495594_0010291
375 Ga0495594_0124956
376 Ga0495594_0132099
377 Ga0495596_0003531
378 Ga0495583_0054058
379 Ga0495618_0000667
380 Ga0495618_0004706
381 Ga0495628_0001421
382 Ga0495628_0005056
383 Ga0495630_0000342
384 Ga0495630_0000517
385 Ga0495630_0000792
386 Ga0495630_0005670
387 Ga0495630_0199116
388 Ga0495648_0000850
389 Ga0495666_0000245
390 Ga0495666_0000536
391 Ga0495666_0001023
392 Ga0495666_0005707
393 Ga0495666_0011493
394 Ga0495652_0015694
395 Ga0495652_0088791
396 Ga0495665_0000068
397 Ga0495665_0000944
398 Ga0495665_0012725
399 Ga0495665_0041166
400 Ga0495640_0002005
401 Ga0495640_0043747
402 Ga0495586_0005474
403 Ga0495586_0005505
404 Ga0495586_0009328
405 Ga0495587_0006000
406 Ga0495645_0000515
407 Ga0495645_0002096
408 Ga0495656_0019579
409 Ga0495634_0000894
410 Ga0495634_0050752
411 Ga0495635_0004191
412 Ga0495661_0001567
413 Ga0495661_0008935
414 Ga0495599_0004542
415 Ga0495623_0025786
416 Ga0495646_0004046
417 Ga0495646_0006160
418 Ga0495669_0119778
419 Ga0495613_0007934
420 Ga0495624_0004814
421 Ga0495624_0017959
422 Ga0495624_0042403
423 Ga0495581_0000695
424 Ga0495581_0002167
425 Ga0495581_0008707
426 Ga0495604_0001617
427 Ga0495604_0009928
428 Ga0495604_0013647
429 Ga0495674_0000546
430 Ga0495674_0006229
431 Ga0495676_0003184
432 Ga0495676_0013335
433 Ga0495680_0003784
434 Ga0495680_0025451
435 Ga0495683_0070462
436 Ga0495675_0046409
437 Ga0495679_000230
438 Ga0495679_000266
439 Ga0495679_001936
440 Ga0495673_0004595
441 Ga0495681_0001812
442 Ga0495684_0012494
443 Ga0495593_0002567
444 Ga0495593_0011736
445 Ga0495602_0009105
446 Ga0495602_0076656
447 Ga0495602_0090068
448 Ga0495602_0113916
449 Ga0495614_0002782
450 Ga0495614_0003870
451 Ga0495614_0009816
452 Ga0496101_0020385
453 Ga0496109_0114635
454 Ga0496110_0029488
455 Ga0496121_0001460
456 Ga0496121_0164912
457 Ga0496125_0040142
458 Ga0466983_0062441
459 Ga0501033_0000427
460 Ga0501034_0000054
461 Ga0501036_0000031
462 Ga0501037_0000096
463 Ga0501037_0004290
464 Ga0501038_0000018
465 Ga0501039_0000018
466 Ga0501040_0034820
467 Ga0501043_0000014
468 Ga0501079_0144391
469 Ga0501081_0028947
470 Ga0501035_0000019
471 Ga0501035_0008829
472 Ga0501044_0003562
473 nmdc:mga09592_51949_c1
474 nmdc:mga06r32_12954_c1
475 Ga0500607_055722
476 Ga0500559_0004989
477 2644029541
478 2644030882
479 2792834515
480 2889916913
481 2900641497
482 2900641513
483 8039102185
484 8054476543

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02515

CoA_transf_3

CoA-transferase family III

73

439

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
5yx6-assembly2.cif.gz_D crystal structure of rv3272 from m. tuberculosis orthorhombic form 0.9354 23 401
4hl6-assembly2.cif.gz_C yfde from escherichia coli 0.9346 32 405
2vjq-assembly1.cif.gz_B formyl-coa transferase mutant variant w48q 0.9331 28 404
5yit-assembly3.cif.gz_E-2 crystal structure of hypothetical protein (rv3272) from mycobacterium tuberculosis 0.929 27 395
5yx6-assembly2.cif.gz_D crystal structure of rv3272 from m. tuberculosis orthorhombic form 0.9277 23 401
ID Description Score Start End Superfamily
af_Q4V9F2_1_227_3.40.50.10540 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.9748 50 261 3.40.50.10540
af_Q9VDL4_46_327_3.40.50.10540 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.9694 28 307 3.40.50.10540
af_Q9VDL4_46_327_3.40.50.10540 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Crotonobetainyl-coa:carnitine coa-transferase; domain 1 0.9593 28 307 3.40.50.10540
af_Q68FU4_261_348_3.30.1540.10 Alpha Beta;2-Layer Sandwich;formyl-coa transferase, domain 3;formyl-coa transferase, domain 3 0.9465 253 339 3.30.1540.10
4hl6E02 Alpha Beta;2-Layer Sandwich;formyl-coa transferase, domain 3;formyl-coa transferase, domain 3 0.9436 251 342 3.30.1540.10
ID Description Score Start End GO Terms
AF-A0A4Q2L6V2-F1-model_v4 deleted 0.9812 24 226
AF-A0A1F3BEW9-F1-model_v4 Carnitine dehydratase 0.9807 50 356 GO:0008410
AF-A0A7W0PUI8-F1-model_v4 CoA transferase 0.9783 27 221 GO:0008410
AF-A0A0A7PLU8-F1-model_v4 L-carnitine dehydratase/bile acid-inducible protein F 0.9772 27 346 GO:0008410
AF-A0A537L7J7-F1-model_v4 CoA transferase 0.9761 27 404 GO:0008410

Map