F353720

General Info

Members Datasets Scaffolds Average Seq Length
241 132 482 502

Family's Representative Sequence

Representative Sequence 3300009094|Ga0111539_10001341|Ga0111539_1000134117
Length 549
Sequence MSVRLKPDTTSDKEFRISSGAPLIAFAGVMAPSVFIKRSLIFVHRWLGIALCVVFLLWFPSGIGMMYWTYPDVSRDDRLERAAALDASTITLSPAEALKVLGSDDSPGQIRLNTFDGRPVYRVGGFGGQSIVYADTGDEQLEVPMDMVHRAAAKWTGQDSKTATVEEMTDVDQWTVQTRLRDLQPLYKFSFPDGQQVYISANTGEVEQYTTTGSRWGAYVGAIPHWLYFTPLRKNGPTWSKFVIWSSGIGTGAAILGIVVGVWMYSPSKKYRNAGAPTSIPYRGQKRWHTVFGLIFGLGAATWAFSGMLSMDPFPQRTNRATNGGAQIARGTGGTRSIQAALRGRMRLESFEQKHPKDALAQLAGLQVKELELTSFMGQPGYLATLADGTTRIVPVDGEPITGYTPEHITEFVTKAVGREALADIRTIDQYDMYYLDRRRERPLPVVLAKLNDEDNTRFYIDPKTSRVVSSYSSRNWMSRWAYHGLHSLDFPWLYNYRPLWDIVVITFMVGGTALCVTSLILAWRVLGRKVCAIVPASRVRSELSEDLA

Samples

Sample ID Description Type Environment
1 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
2 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
3 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
8 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
11 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
14 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
15 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
16 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
17 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
18 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
19 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
20 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
21 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
22 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
23 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
24 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
25 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
26 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
27 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
28 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
29 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
30 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
31 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
32 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
33 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
34 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
35 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
36 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
37 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
38 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
39 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
40 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
42 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
43 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
44 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
45 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
46 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
47 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
48 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
49 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
50 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
51 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
52 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
53 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
54 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
55 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
56 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
57 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
58 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
59 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
60 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
61 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
62 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
63 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
64 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
65 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
66 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
67 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
68 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
88 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
90 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
91 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
92 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
93 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
94 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
95 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
96 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
97 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
98 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
99 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
100 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
101 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
102 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
103 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
104 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
105 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
106 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
107 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
108 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
109 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
110 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
111 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
112 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
113 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
114 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
115 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
116 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
117 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
118 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
119 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
120 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
121 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
122 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
123 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
124 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
125 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
126 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
127 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
128 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
129 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
130 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
131 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
132 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.83
Rhizosphere 99.17
Stem 0
Stem Tuber 0
Unclassified 21.16

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0111539_10001341 3300009094 Bacteria 32793
2 Ga0065712_10067865 3300005290 Bacteria 24437
3 Ga0070676_10003154 3300005328 Bacteria 8528
4 Ga0070683_100009135 3300005329 Bacteria 8460
5 Ga0070683_100044376 3300005329 Unclassified 4099
6 Ga0070690_100030465 3300005330 Bacteria 3353
7 Ga0070670_100003687 3300005331 Bacteria 12759
8 Ga0070670_100033017 3300005331 Bacteria 4460
9 Ga0070670_100134018 3300005331 Bacteria 2140
10 Ga0068869_100064675 3300005334 Unclassified 2691
11 Ga0068868_100081141 3300005338 Bacteria 2600
12 Ga0070660_100027232 3300005339 Bacteria 4264
13 Ga0070689_100024583 3300005340 Unclassified 4520
14 Ga0070669_100003896 3300005353 Bacteria 10793
15 Ga0070669_100027492 3300005353 Bacteria 4094
16 Ga0070669_100056639 3300005353 Bacteria 2874
17 Ga0070675_100000717 3300005354 Bacteria 23058
18 Ga0070675_100010824 3300005354 Bacteria 7133
19 Ga0070675_100015715 3300005354 Bacteria 5989
20 Ga0070674_100009740 3300005356 Bacteria 5771
21 Ga0070673_100017977 3300005364 Bacteria 5042
22 Ga0070673_100057894 3300005364 Bacteria 3063
23 Ga0070673_100068704 3300005364 Unclassified 2838
24 Ga0070688_100006161 3300005365 Bacteria 6383
25 Ga0070688_100012203 3300005365 Bacteria 4808
26 Ga0070659_100062864 3300005366 Unclassified 2935
27 Ga0070705_100006695 3300005440 Bacteria 5665
28 Ga0070705_100034046 3300005440 Bacteria 2844
29 Ga0070700_100007138 3300005441 Bacteria 6013
30 Ga0070700_100094893 3300005441 Bacteria 1954
31 Ga0070694_100013176 3300005444 Bacteria 5160
32 Ga0070678_100033860 3300005456 Bacteria 3552
33 Ga0070681_10012594 3300005458 Bacteria 8392
34 Ga0070681_10097392 3300005458 Bacteria 2889
35 Ga0070698_100049883 3300005471 Bacteria 4271
36 Ga0070698_100195500 3300005471 Bacteria 1960
37 Ga0070698_100215505 3300005471 Unclassified 1854
38 Ga0070699_100044666 3300005518 Bacteria 3836
39 Ga0070672_100032179 3300005543 Bacteria 3957
40 Ga0070672_100097655 3300005543 Unclassified 2378
41 Ga0070686_100067866 3300005544 Unclassified 2325
42 Ga0070696_100014005 3300005546 Bacteria 5384
43 Ga0070696_100016344 3300005546 Unclassified 4995
44 Ga0070693_100041403 3300005547 Unclassified 2591
45 Ga0070665_100101675 3300005548 Bacteria 2878
46 Ga0070664_100018681 3300005564 Bacteria 5701
47 Ga0070664_100019582 3300005564 Bacteria 5569
48 Ga0070664_100092716 3300005564 Bacteria 2616
49 Ga0070664_100130846 3300005564 Unclassified 2204
50 Ga0068857_100003907 3300005577 Bacteria 12542
51 Ga0068854_100029875 3300005578 Bacteria 3776
52 Ga0068854_100029888 3300005578 Bacteria 3776
53 Ga0070702_100001627 3300005615 Bacteria 9296
54 Ga0068859_100033258 3300005617 Bacteria 5178
55 Ga0068859_100037185 3300005617 Bacteria 4886
56 Ga0068859_100038802 3300005617 Bacteria 4778
57 Ga0068859_100055039 3300005617 Bacteria 4003
58 Ga0068864_100014704 3300005618 Bacteria 6500
59 Ga0068864_100026364 3300005618 Bacteria 4902
60 Ga0068864_100047741 3300005618 Bacteria 3679
61 Ga0068858_100048393 3300005842 Bacteria 3940
62 Ga0068860_100175073 3300005843 Bacteria 2074
63 Ga0068860_100200719 3300005843 Bacteria 1932
64 Ga0068862_100036967 3300005844 Bacteria 4138
65 Ga0081455_10029050 3300005937 Bacteria 5045
66 Ga0070717_10021518 3300006028 Bacteria 5083
67 Ga0097621_100007154 3300006237 Bacteria 7955
68 Ga0097621_100151944 3300006237 Unclassified 1986
69 Ga0068871_100055117 3300006358 Unclassified 3227
70 Ga0075428_100000015 3300006844 Bacteria 164556
71 Ga0075428_100015030 3300006844 Bacteria 8599
72 Ga0075428_100018009 3300006844 Bacteria 7805
73 Ga0075428_100051230 3300006844 Unclassified 4527
74 Ga0075428_100224188 3300006844 Bacteria 2029
75 Ga0075430_100013136 3300006846 Bacteria 7056
76 Ga0075430_100016288 3300006846 Bacteria 6332
77 Ga0075431_100034268 3300006847 Bacteria 5231
78 Ga0075431_100106950 3300006847 Bacteria 2886
79 Ga0075433_10000354 3300006852 Bacteria 28740
80 Ga0075433_10000751 3300006852 Bacteria 22250
81 Ga0075433_10001807 3300006852 Bacteria 16054
82 Ga0075433_10004762 3300006852 Bacteria 10589
83 Ga0075433_10097192 3300006852 Bacteria 2606
84 Ga0075433_10144752 3300006852 Bacteria 2113
85 Ga0075434_100000015 3300006871 Bacteria 79201
86 Ga0075434_100000062 3300006871 Bacteria 55222
87 Ga0075434_100001853 3300006871 Bacteria 18251
88 Ga0075434_100037770 3300006871 Bacteria 4781
89 Ga0075429_100097433 3300006880 Bacteria 2565
90 Ga0075429_100115693 3300006880 Bacteria 2344
91 Ga0068865_100088063 3300006881 Bacteria 2246
92 Ga0097620_100033258 3300006931 Bacteria 5178
93 Ga0097620_100037187 3300006931 Bacteria 4886
94 Ga0097620_100038803 3300006931 Bacteria 4778
95 Ga0097620_100055039 3300006931 Bacteria 4003
96 Ga0075435_100004845 3300007076 Bacteria 9313
97 Ga0105240_10005288 3300009093 Bacteria 19270
98 Ga0111539_10000002 3300009094 Bacteria 983359
99 Ga0111539_10013448 3300009094 Bacteria 10230
100 Ga0111539_10016693 3300009094 Bacteria 9100
101 Ga0111539_10018753 3300009094 Bacteria 8563
102 Ga0111539_10020947 3300009094 Bacteria 8050
103 Ga0111539_10049698 3300009094 Bacteria 4999
104 Ga0111539_10158158 3300009094 Bacteria 2651
105 Ga0111539_10253482 3300009094 Bacteria 2049
106 Ga0105245_10001129 3300009098 Bacteria 24158
107 Ga0105245_10063279 3300009098 Unclassified 3340
108 Ga0105245_10073416 3300009098 Unclassified 3111
109 Ga0105245_10098218 3300009098 Bacteria 2705
110 Ga0114129_10012956 3300009147 Bacteria 11869
111 Ga0114129_10016296 3300009147 Bacteria 10579
112 Ga0114129_10048638 3300009147 Bacteria 5959
113 Ga0105243_10002705 3300009148 Bacteria 14735
114 Ga0105243_10019811 3300009148 Bacteria 5102
115 Ga0105243_10153700 3300009148 Unclassified 1977
116 Ga0105241_10024098 3300009174 Unclassified 4519
117 Ga0105242_10126787 3300009176 Unclassified 2198
118 Ga0105242_10217102 3300009176 Bacteria 1707
119 Ga0105248_10090954 3300009177 Unclassified 3437
120 Ga0105248_10177298 3300009177 Bacteria 2402
121 Ga0105238_10009787 3300009551 Bacteria 9597
122 Ga0105249_10170982 3300009553 Unclassified 2107
123 Ga0105249_10176978 3300009553 Bacteria 2072
124 Ga0105239_10075080 3300010375 Unclassified 3716
125 Ga0105246_10086729 3300011119 Bacteria 2245
126 Ga0157378_10009896 3300013297 Bacteria 8310
127 Ga0163162_10005243 3300013306 Bacteria 12493
128 Ga0163162_10081841 3300013306 Plasmid 3300
129 Ga0157372_10088406 3300013307 Unclassified 3518
130 Ga0157372_10218747 3300013307 Unclassified 2208
131 Ga0163163_10004822 3300014325 Bacteria 11584
132 Ga0163163_10034305 3300014325 Bacteria 4913
133 Ga0163163_10065123 3300014325 Unclassified 3616
134 Ga0157380_10270242 3300014326 Bacteria 1549
135 Ga0157379_10080673 3300014968 Unclassified 2914
136 Ga0207645_10006253 3300025907 Bacteria 8556
137 Ga0207662_10010156 3300025918 Bacteria 5190
138 Ga0207657_10102388 3300025919 Unclassified 2375
139 Ga0207652_10068915 3300025921 Unclassified 3070
140 Ga0207652_10139845 3300025921 Bacteria 2164
141 Ga0207681_10116465 3300025923 Bacteria 1952
142 Ga0207694_10009989 3300025924 Bacteria 7156
143 Ga0207659_10000264 3300025926 Bacteria 32044
144 Ga0207659_10039335 3300025926 Bacteria 3298
145 Ga0207659_10105148 3300025926 Bacteria 2135
146 Ga0207686_10007887 3300025934 Bacteria 5738
147 Ga0207686_10050588 3300025934 Unclassified 2584
148 Ga0207709_10009550 3300025935 Bacteria 5339
149 Ga0207709_10041476 3300025935 Bacteria 2762
150 Ga0207704_10103460 3300025938 Bacteria 1905
151 Ga0207691_10004071 3300025940 Bacteria 14181
152 Ga0207691_10095131 3300025940 Bacteria 2665
153 Ga0207711_10102776 3300025941 Unclassified 2530
154 Ga0207651_10003849 3300025960 Bacteria 7446
155 Ga0207651_10042600 3300025960 Bacteria 3023
156 Ga0207640_10013543 3300025981 Bacteria 4680
157 Ga0207640_10075880 3300025981 Bacteria 2280
158 Ga0207708_10003249 3300026075 Bacteria 11978
159 Ga0207648_10029587 3300026089 Bacteria 4857
160 Ga0207648_10114449 3300026089 Bacteria 2370
161 Ga0207674_10002171 3300026116 Bacteria 24814
162 Ga0207675_100006468 3300026118 Bacteria 11095
163 Ga0207675_100009543 3300026118 Bacteria 9076
164 Ga0207675_100062315 3300026118 Unclassified 3483
165 Ga0207683_10048507 3300026121 Bacteria 3718
166 Ga0207683_10113551 3300026121 Unclassified 2426
167 Ga0207428_10000004 3300027907 Bacteria 727800
168 Ga0207428_10003905 3300027907 Bacteria 14297
169 Ga0207428_10013346 3300027907 Bacteria 7182
170 Ga0207428_10024794 3300027907 Bacteria 5034
171 Ga0207428_10105456 3300027907 Bacteria 2174
172 Ga0268265_10045896 3300028380 Unclassified 3263
173 Ga0268265_10090085 3300028380 Bacteria 2449
174 Ga0268265_10277179 3300028380 Unclassified 1499
175 Ga0307408_100004650 3300031548 Bacteria 9274
176 Ga0307407_10003703 3300031903 Bacteria 6335
177 Ga0307416_100002755 3300032002 Bacteria 10200
178 Ga0307414_10047715 3300032004 Bacteria 2950
179 Ga0373943_0008609 3300035170 Unclassified 4575
180 Ga0373937_0093592 3300036401 Bacteria 2786
181 Ga0495651_0000246 3300046462 Bacteria 41958
182 Ga0495580_0061024 3300046472 Unclassified 2648
183 Ga0495582_0004672 3300046473 Bacteria 7703
184 Ga0495664_0090290 3300046477 Bacteria 1842
185 Ga0495608_0019349 3300046511 Unclassified 4687
186 Ga0495630_0019818 3300046517 Unclassified 4950
187 Ga0495665_0019073 3300046531 Bacteria 3686
188 Ga0495586_0027576 3300046535 Bacteria 3038
189 Ga0495645_0015650 3300046543 Bacteria 5396
190 Ga0495667_0027979 3300046559 Unclassified 3796
191 Ga0495657_0132483 3300046675 Unclassified 1560
192 Ga0495646_0034679 3300046680 Bacteria 3133
193 Ga0495613_0002936 3300046689 Bacteria 12771
194 Ga0495613_0005454 3300046689 Bacteria 9553
195 Ga0495600_0046811 3300046809 Unclassified 2821
196 Ga0495604_0083238 3300047317 Bacteria 2391
197 Ga0495674_0276782 3300047319 Bacteria 1376
198 Ga0495680_0000106 3300047322 Bacteria 77255
199 Ga0495675_0001974 3300047444 Bacteria 12241
200 Ga0495675_0026970 3300047444 Bacteria 3662
201 Ga0495684_0000113 3300047471 Bacteria 58380
202 Ga0495684_0002769 3300047471 Bacteria 13835
203 Ga0495684_0037304 3300047471 Unclassified 3728
204 Ga0495684_0076950 3300047471 Bacteria 2534
205 Ga0495602_0018374 3300048088 Bacteria 6985
206 Ga0495614_0021063 3300048089 Bacteria 2818
207 Ga0496112_0113607 3300048915 Unclassified 2679
208 Ga0496114_0050446 3300048917 Bacteria 3464
209 Ga0501041_0024835 3300049577 Unclassified 3599
210 Ga0501048_0138746 3300049582 Unclassified 1719
211 Ga0501079_0053332 3300049741 Unclassified 3119
212 nmdc:mga05p37_24393_c1 3300050507 Bacteria 7349
213 nmdc:mga05p37_269323_c1 3300050507 Bacteria 2036
214 nmdc:mga05p37_27102_c1 3300050507 Bacteria 6974
215 nmdc:mga05p37_29977_c1 3300050507 Bacteria 6638
216 nmdc:mga05p37_86529_c1 3300050507 Bacteria 3863
217 nmdc:mga09592_147457_c1 3300050508 Unclassified 2029
218 nmdc:mga09592_147583_c1 3300050508 Bacteria 2028
219 nmdc:mga09592_79469_c1 3300050508 Bacteria 2792
220 nmdc:mga0qj67_19358_c1 3300050509 Bacteria 5200
221 nmdc:mga06r32_45505_c1 3300050510 Bacteria 4184
222 nmdc:mga06r32_80822_c1 3300050510 Unclassified 3164
223 nmdc:mga08y16_29800_c1 3300050511 Bacteria 5746
224 nmdc:mga08y16_2_c1 3300050511 Bacteria 983367
225 nmdc:mga08y16_4134_c1 3300050511 Bacteria 15148
226 nmdc:mga08y16_46611_c1 3300050511 Bacteria 4538
227 nmdc:mga0n895_19223_c1 3300050512 Bacteria 6345
228 nmdc:mga0n895_37123_c1 3300050512 Bacteria 4711
229 nmdc:mga0n895_61401_c1 3300050512 Bacteria 3710
230 nmdc:mga0n895_7239_c1 3300050512 Bacteria 9504
231 nmdc:mga0rr50_113226_c1 3300050513 Bacteria 2150
232 nmdc:mga0rr50_5584_c1 3300050513 Bacteria 7523
233 nmdc:mga0a205_1267_c2 3300050515 Bacteria 12352
234 nmdc:mga0a205_163957_c1 3300050515 Bacteria 2118
235 nmdc:mga0a205_17596_c1 3300050515 Bacteria 6706
236 nmdc:mga0a205_2511_c1 3300050515 Bacteria 16177
237 nmdc:mga0a205_850_c1 3300050515 Bacteria 25026
238 Ga0495601_0023812 3300053077 Unclassified 3765
239 Ga0495612_0014742 3300053078 Unclassified 3138
240 Ga0495595_0006216 3300053084 Bacteria 4860
241 Ga0495619_0019443 3300053085 Unclassified 4318
242 Ga0111539_10001341
243 Ga0065712_10067865
244 Ga0070676_10003154
245 Ga0070683_100009135
246 Ga0070683_100044376
247 Ga0070690_100030465
248 Ga0070670_100003687
249 Ga0070670_100033017
250 Ga0070670_100134018
251 Ga0068869_100064675
252 Ga0068868_100081141
253 Ga0070660_100027232
254 Ga0070689_100024583
255 Ga0070669_100003896
256 Ga0070669_100027492
257 Ga0070669_100056639
258 Ga0070675_100000717
259 Ga0070675_100010824
260 Ga0070675_100015715
261 Ga0070674_100009740
262 Ga0070673_100017977
263 Ga0070673_100057894
264 Ga0070673_100068704
265 Ga0070688_100006161
266 Ga0070688_100012203
267 Ga0070659_100062864
268 Ga0070705_100006695
269 Ga0070705_100034046
270 Ga0070700_100007138
271 Ga0070700_100094893
272 Ga0070694_100013176
273 Ga0070678_100033860
274 Ga0070681_10012594
275 Ga0070681_10097392
276 Ga0070698_100049883
277 Ga0070698_100195500
278 Ga0070698_100215505
279 Ga0070699_100044666
280 Ga0070672_100032179
281 Ga0070672_100097655
282 Ga0070686_100067866
283 Ga0070696_100014005
284 Ga0070696_100016344
285 Ga0070693_100041403
286 Ga0070665_100101675
287 Ga0070664_100018681
288 Ga0070664_100019582
289 Ga0070664_100092716
290 Ga0070664_100130846
291 Ga0068857_100003907
292 Ga0068854_100029875
293 Ga0068854_100029888
294 Ga0070702_100001627
295 Ga0068859_100033258
296 Ga0068859_100037185
297 Ga0068859_100038802
298 Ga0068859_100055039
299 Ga0068864_100014704
300 Ga0068864_100026364
301 Ga0068864_100047741
302 Ga0068858_100048393
303 Ga0068860_100175073
304 Ga0068860_100200719
305 Ga0068862_100036967
306 Ga0081455_10029050
307 Ga0070717_10021518
308 Ga0097621_100007154
309 Ga0097621_100151944
310 Ga0068871_100055117
311 Ga0075428_100000015
312 Ga0075428_100015030
313 Ga0075428_100018009
314 Ga0075428_100051230
315 Ga0075428_100224188
316 Ga0075430_100013136
317 Ga0075430_100016288
318 Ga0075431_100034268
319 Ga0075431_100106950
320 Ga0075433_10000354
321 Ga0075433_10000751
322 Ga0075433_10001807
323 Ga0075433_10004762
324 Ga0075433_10097192
325 Ga0075433_10144752
326 Ga0075434_100000015
327 Ga0075434_100000062
328 Ga0075434_100001853
329 Ga0075434_100037770
330 Ga0075429_100097433
331 Ga0075429_100115693
332 Ga0068865_100088063
333 Ga0097620_100033258
334 Ga0097620_100037187
335 Ga0097620_100038803
336 Ga0097620_100055039
337 Ga0075435_100004845
338 Ga0105240_10005288
339 Ga0111539_10000002
340 Ga0111539_10013448
341 Ga0111539_10016693
342 Ga0111539_10018753
343 Ga0111539_10020947
344 Ga0111539_10049698
345 Ga0111539_10158158
346 Ga0111539_10253482
347 Ga0105245_10001129
348 Ga0105245_10063279
349 Ga0105245_10073416
350 Ga0105245_10098218
351 Ga0114129_10012956
352 Ga0114129_10016296
353 Ga0114129_10048638
354 Ga0105243_10002705
355 Ga0105243_10019811
356 Ga0105243_10153700
357 Ga0105241_10024098
358 Ga0105242_10126787
359 Ga0105242_10217102
360 Ga0105248_10090954
361 Ga0105248_10177298
362 Ga0105238_10009787
363 Ga0105249_10170982
364 Ga0105249_10176978
365 Ga0105239_10075080
366 Ga0105246_10086729
367 Ga0157378_10009896
368 Ga0163162_10005243
369 Ga0163162_10081841
370 Ga0157372_10088406
371 Ga0157372_10218747
372 Ga0163163_10004822
373 Ga0163163_10034305
374 Ga0163163_10065123
375 Ga0157380_10270242
376 Ga0157379_10080673
377 Ga0207645_10006253
378 Ga0207662_10010156
379 Ga0207657_10102388
380 Ga0207652_10068915
381 Ga0207652_10139845
382 Ga0207681_10116465
383 Ga0207694_10009989
384 Ga0207659_10000264
385 Ga0207659_10039335
386 Ga0207659_10105148
387 Ga0207686_10007887
388 Ga0207686_10050588
389 Ga0207709_10009550
390 Ga0207709_10041476
391 Ga0207704_10103460
392 Ga0207691_10004071
393 Ga0207691_10095131
394 Ga0207711_10102776
395 Ga0207651_10003849
396 Ga0207651_10042600
397 Ga0207640_10013543
398 Ga0207640_10075880
399 Ga0207708_10003249
400 Ga0207648_10029587
401 Ga0207648_10114449
402 Ga0207674_10002171
403 Ga0207675_100006468
404 Ga0207675_100009543
405 Ga0207675_100062315
406 Ga0207683_10048507
407 Ga0207683_10113551
408 Ga0207428_10000004
409 Ga0207428_10003905
410 Ga0207428_10013346
411 Ga0207428_10024794
412 Ga0207428_10105456
413 Ga0268265_10045896
414 Ga0268265_10090085
415 Ga0268265_10277179
416 Ga0307408_100004650
417 Ga0307407_10003703
418 Ga0307416_100002755
419 Ga0307414_10047715
420 Ga0373943_0008609
421 Ga0373937_0093592
422 Ga0495651_0000246
423 Ga0495580_0061024
424 Ga0495582_0004672
425 Ga0495664_0090290
426 Ga0495608_0019349
427 Ga0495630_0019818
428 Ga0495665_0019073
429 Ga0495586_0027576
430 Ga0495645_0015650
431 Ga0495667_0027979
432 Ga0495657_0132483
433 Ga0495646_0034679
434 Ga0495613_0002936
435 Ga0495613_0005454
436 Ga0495600_0046811
437 Ga0495604_0083238
438 Ga0495674_0276782
439 Ga0495680_0000106
440 Ga0495675_0001974
441 Ga0495675_0026970
442 Ga0495684_0000113
443 Ga0495684_0002769
444 Ga0495684_0037304
445 Ga0495684_0076950
446 Ga0495602_0018374
447 Ga0495614_0021063
448 Ga0496112_0113607
449 Ga0496114_0050446
450 Ga0501041_0024835
451 Ga0501048_0138746
452 Ga0501079_0053332
453 nmdc:mga05p37_24393_c1
454 nmdc:mga05p37_269323_c1
455 nmdc:mga05p37_27102_c1
456 nmdc:mga05p37_29977_c1
457 nmdc:mga05p37_86529_c1
458 nmdc:mga09592_147457_c1
459 nmdc:mga09592_147583_c1
460 nmdc:mga09592_79469_c1
461 nmdc:mga0qj67_19358_c1
462 nmdc:mga06r32_45505_c1
463 nmdc:mga06r32_80822_c1
464 nmdc:mga08y16_29800_c1
465 nmdc:mga08y16_2_c1
466 nmdc:mga08y16_4134_c1
467 nmdc:mga08y16_46611_c1
468 nmdc:mga0n895_19223_c1
469 nmdc:mga0n895_37123_c1
470 nmdc:mga0n895_61401_c1
471 nmdc:mga0n895_7239_c1
472 nmdc:mga0rr50_113226_c1
473 nmdc:mga0rr50_5584_c1
474 nmdc:mga0a205_1267_c2
475 nmdc:mga0a205_163957_c1
476 nmdc:mga0a205_17596_c1
477 nmdc:mga0a205_2511_c1
478 nmdc:mga0a205_850_c1
479 Ga0495601_0023812
480 Ga0495612_0014742
481 Ga0495595_0006216
482 Ga0495619_0019443

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03929

PepSY_TM

PepSY-associated TM region

42

369

0.66

Structural Annotation

Top 5 Hits

ID Description Score Start End
6bk8-assembly1.cif.gz_u s. cerevisiae spliceosomal post-catalytic p complex 0.8384 157 183
5g2d-assembly1.cif.gz_A the crystal structure of light-driven chloride pump clr (t102n) mutant at ph 4.5. 0.7835 211 282
8jh0-assembly1.cif.gz_A crystal structure of the light-driven sodium pump ianar 0.7787 211 282
6rf3-assembly1.cif.gz_B crystal structure of the potassium-pumping g263f mutant of the light-driven sodium pump kr2 in the pentameric form, ph 8.0 0.776 211 282
4xtl-assembly1.cif.gz_A crystal structure of the light-driven sodium pump kr2 in the monomeric blue form, ph 4.3 0.7704 211 282
ID Description Score Start End Superfamily
af_K7KCC2_995_1185_2.40.128.630 Mainly Beta;Beta Barrel;Lipocalin; 0.7894 156 184 2.40.128.630
af_Q1EC46_1_96_1.20.5.110 Mainly Alpha;Up-down Bundle;Single alpha-helices involved in coiled-coils or other helix-helix interfaces; 0.7752 211 282 1.20.5.110
af_Q9SI56_16_268_1.20.140.150 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3; 0.7689 211 282 1.20.140.150
af_A5JYW5_6_210_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.7542 207 277 1.20.1070.10
af_Q9N4Q8_2_275_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.7493 214 282 1.20.1070.10
ID Description Score Start End GO Terms
AF-A0A2V8ED51-F1-model_v4 PepSY domain-containing protein 0.9071 7 505 GO:0016020
AF-A0A2V8ED51-F1-model_v4 PepSY domain-containing protein 0.9019 7 505 GO:0016020
AF-A0A2V8FV68-F1-model_v4 PepSY domain-containing protein 0.8888 7 296 GO:0016020
AF-A0A2V8DHL1-F1-model_v4 PepSY domain-containing protein 0.8806 23 460 GO:0016020
AF-A0A2V8DHL1-F1-model_v4 PepSY domain-containing protein 0.8711 23 460 GO:0016020

Map