F352041

General Info

Members Datasets Scaffolds Average Seq Length
239 150 478 249

Family's Representative Sequence

Representative Sequence 3300026116|Ga0207674_10132859|Ga0207674_101328592
Length 279
Sequence MRKKFVNLNTLEKESKTNQTNENELTPFAGHRMKLTEITIAETEDWIALNKPSGLLSIPDREGKDISLKKLLIEKYARPDDPVGRGNIFTVHRLDKDTSGLIVFAKNETTHKLLSQQFEERQTEKIYVGLVLGSLAEKKGSINTLISEHPVKKGLMTVYKKGKESLTDYEVLEDFKIFSWVQFQIHTGRTHQIRVHAKHMGHPVVCDELYGDGKPVLLSSLKHKFKLSKNELEERPILNRLALHALSLQFINTNGEKMKLEAPLPKDLKALLQQLRKRK

Samples

Sample ID Description Type Environment
1 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
6 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
7 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
10 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
11 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
14 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
17 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
18 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
19 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
20 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
21 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
22 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
23 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
24 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
25 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
28 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
29 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
30 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
31 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
32 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
33 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
34 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
35 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
37 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
38 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
39 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
40 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
41 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
42 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
43 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
44 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
45 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
46 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
47 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
49 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
50 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
51 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
52 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
53 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
54 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
55 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
56 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
57 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
58 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
59 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
60 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
61 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
62 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
63 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
64 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
65 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
99 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
100 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
101 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
102 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
103 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
104 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
105 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
106 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
107 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
108 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
109 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
110 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
111 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
112 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
113 3300042124 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_082716_2423 Metagenome Rhizosphere
114 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
115 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
116 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
117 3300046537 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 rhizosphere Metagenome Rhizosphere
118 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
119 3300049513 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D25_A_7_control Metagenome Rhizosphere
120 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
121 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
126 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
128 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
129 3300049653 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D2_A_0_control Metagenome Rhizosphere
130 3300049654 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_A_0_control Metagenome Rhizosphere
131 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
132 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
133 3300049673 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I13_A_3_drought Metagenome Rhizosphere
134 3300049674 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F11_A_3_drought Metagenome Rhizosphere
135 3300049675 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_A_3_control Metagenome Rhizosphere
136 3300049688 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_A_4_drought Metagenome Rhizosphere
137 3300049704 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control Metagenome Rhizosphere
138 3300049707 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_B_2_drought Metagenome Rhizosphere
139 3300049760 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F12_A_4_control Metagenome Rhizosphere
140 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
141 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
142 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
143 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
144 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
145 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
146 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
147 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
148 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
149 2818991444 Filimonas endophytica 3197 Isolate Unclassified
150 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.16
Metatranscriptomes 0
Isolates 0.84

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.09
Nodule 0
Rhizoplane 0
Rhizosphere 94.56
Stem 0
Stem Tuber 0
Unclassified 11.72

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207674_10132859 3300026116 Bacteria 2451
2 SwRhRL2b_contig_1663676 2162886007 Bacteria 241831
3 rootH2_10017645 3300003320 Bacteria 5287
4 rootH1_10141644 3300003323 Bacteria 1241
5 Ga0065704_10120378 3300005289 Unclassified 1777
6 Ga0065712_10001214 3300005290 Bacteria 6460
7 Ga0065712_10006178 3300005290 Bacteria 4550
8 Ga0070690_100090943 3300005330 Unclassified 2010
9 Ga0070690_100343962 3300005330 Bacteria 1081
10 Ga0070670_100044364 3300005331 Bacteria 3823
11 Ga0070670_100556465 3300005331 Bacteria 1024
12 Ga0068868_100044142 3300005338 Bacteria 3485
13 Ga0068868_100091504 3300005338 Bacteria 2451
14 Ga0070689_100027827 3300005340 Bacteria 4265
15 Ga0070689_100082038 3300005340 Bacteria 2532
16 Ga0070669_100266377 3300005353 Bacteria 1369
17 Ga0070675_100088917 3300005354 Unclassified 2585
18 Ga0070675_100154051 3300005354 Bacteria 1972
19 Ga0070675_100740782 3300005354 Bacteria 896
20 Ga0070671_100014566 3300005355 Bacteria 6359
21 Ga0070671_100039986 3300005355 Bacteria 3893
22 Ga0070671_100077956 3300005355 Bacteria 2769
23 Ga0070671_100731929 3300005355 Bacteria 859
24 Ga0070674_100017074 3300005356 Unclassified 4557
25 Ga0070673_100103946 3300005364 Bacteria 2344
26 Ga0070673_100146368 3300005364 Unclassified 1997
27 Ga0070673_100163241 3300005364 Unclassified 1896
28 Ga0070688_100037385 3300005365 Bacteria 2957
29 Ga0070688_100163204 3300005365 Bacteria 1532
30 Ga0070667_100009672 3300005367 Bacteria 7996
31 Ga0070667_100026888 3300005367 Bacteria 4787
32 Ga0070667_100059573 3300005367 Bacteria 3230
33 Ga0070667_100247049 3300005367 Bacteria 1594
34 Ga0070685_10002638 3300005466 Bacteria 9192
35 Ga0070685_10045713 3300005466 Bacteria 2512
36 Ga0070707_100110495 3300005468 Bacteria 2666
37 Ga0070698_100017260 3300005471 Bacteria 7606
38 Ga0070698_100063639 3300005471 Bacteria 3720
39 Ga0070699_100388969 3300005518 Bacteria 1260
40 Ga0068853_100266832 3300005539 Unclassified 1575
41 Ga0070672_100017827 3300005543 Bacteria 5118
42 Ga0070672_100160560 3300005543 Bacteria 1864
43 Ga0070665_100457616 3300005548 Bacteria 1286
44 Ga0068855_100281999 3300005563 Bacteria 1844
45 Ga0068852_100020328 3300005616 Bacteria 5279
46 Ga0068859_100000007 3300005617 Bacteria 390070
47 Ga0068859_100007287 3300005617 Bacteria 11220
48 Ga0068859_100025153 3300005617 Bacteria 5974
49 Ga0068859_100101112 3300005617 Bacteria 2939
50 Ga0068859_100179319 3300005617 Bacteria 2201
51 Ga0068864_100024333 3300005618 Bacteria 5094
52 Ga0068864_100097355 3300005618 Bacteria 2605
53 Ga0068861_100160526 3300005719 Unclassified 1854
54 Ga0068870_10322786 3300005840 Bacteria 981
55 Ga0068863_100002875 3300005841 Bacteria 17048
56 Ga0068863_100005382 3300005841 Bacteria 12622
57 Ga0068863_100032208 3300005841 Bacteria 4997
58 Ga0068863_100320091 3300005841 Bacteria 1506
59 Ga0068863_100440013 3300005841 Bacteria 1278
60 Ga0068863_100915482 3300005841 Bacteria 878
61 Ga0068858_100003163 3300005842 Bacteria 16480
62 Ga0068858_100023266 3300005842 Bacteria 5775
63 Ga0068858_100119528 3300005842 Bacteria 2463
64 Ga0068860_100000818 3300005843 Bacteria 34832
65 Ga0068860_100001511 3300005843 Bacteria 25059
66 Ga0068860_100268781 3300005843 Bacteria 1664
67 Ga0068862_100263189 3300005844 Bacteria 1575
68 Ga0097621_100084653 3300006237 Unclassified 2644
69 Ga0068871_100034960 3300006358 Bacteria 3991
70 Ga0068871_100177570 3300006358 Bacteria 1829
71 Ga0075428_100040387 3300006844 Bacteria 5133
72 Ga0075428_100054057 3300006844 Bacteria 4400
73 Ga0075428_100161544 3300006844 Bacteria 2431
74 Ga0075430_100001247 3300006846 Bacteria 20476
75 Ga0075431_100012497 3300006847 Bacteria 8573
76 Ga0075429_100058205 3300006880 Bacteria 3365
77 Ga0068865_100104310 3300006881 Bacteria 2081
78 Ga0097620_100000007 3300006931 Bacteria 390070
79 Ga0097620_100007287 3300006931 Bacteria 11220
80 Ga0097620_100025152 3300006931 Bacteria 5974
81 Ga0097620_100101127 3300006931 Bacteria 2939
82 Ga0097620_100179323 3300006931 Bacteria 2201
83 Ga0105240_10000414 3300009093 Bacteria 79229
84 Ga0111539_10288847 3300009094 Bacteria 1908
85 Ga0111539_10507613 3300009094 Bacteria 1404
86 Ga0111539_11066809 3300009094 Bacteria 939
87 Ga0105245_10365991 3300009098 Unclassified 1432
88 Ga0105247_10051923 3300009101 Unclassified 2526
89 Ga0105247_10073661 3300009101 Bacteria 2140
90 Ga0114129_10217470 3300009147 Bacteria 2580
91 Ga0114129_10727002 3300009147 Bacteria 1273
92 Ga0114129_10769671 3300009147 Bacteria 1231
93 Ga0105243_10193710 3300009148 Unclassified 1777
94 Ga0105241_10002507 3300009174 Bacteria 13802
95 Ga0105242_10001449 3300009176 Bacteria 18668
96 Ga0105237_10003211 3300009545 Bacteria 19577
97 Ga0105237_10051665 3300009545 Bacteria 4128
98 Ga0105249_10000678 3300009553 Bacteria 30967
99 Ga0105249_10034897 3300009553 Bacteria 4559
100 Ga0105249_10061101 3300009553 Bacteria 3458
101 Ga0105249_10209475 3300009553 Bacteria 1912
102 Ga0105239_10208224 3300010375 Unclassified 2192
103 Ga0105246_10076708 3300011119 Unclassified 2369
104 Ga0157371_10003627 3300013102 Bacteria 13899
105 Ga0157374_10013517 3300013296 Bacteria 7126
106 Ga0157374_10480111 3300013296 Bacteria 1246
107 Ga0157378_10002819 3300013297 Bacteria 15501
108 Ga0157378_10038722 3300013297 Bacteria 4227
109 Ga0157378_10088199 3300013297 Unclassified 2815
110 Ga0157378_10424115 3300013297 Bacteria 1315
111 Ga0163162_10000226 3300013306 Bacteria 51615
112 Ga0163162_10034414 3300013306 Bacteria 5042
113 Ga0157372_10018886 3300013307 Bacteria 7418
114 Ga0157372_10079354 3300013307 Bacteria 3712
115 Ga0157372_10406908 3300013307 Bacteria 1585
116 Ga0157375_10823741 3300013308 Bacteria 1076
117 Ga0157375_11057677 3300013308 Bacteria 949
118 Ga0163163_10051376 3300014325 Bacteria 4065
119 Ga0163163_10489573 3300014325 Bacteria 1291
120 Ga0157380_10249903 3300014326 Unclassified 1605
121 Ga0157379_10033685 3300014968 Bacteria 4568
122 Ga0157376_10005378 3300014969 Bacteria 8949
123 Ga0157376_10153479 3300014969 Bacteria 2079
124 Ga0157376_10853460 3300014969 Bacteria 926
125 Ga0207656_10025311 3300025321 Bacteria 2408
126 Ga0207682_10029767 3300025893 Bacteria 2185
127 Ga0207680_10000015 3300025903 Bacteria 138253
128 Ga0207643_10018222 3300025908 Bacteria 3844
129 Ga0207654_10002787 3300025911 Bacteria 8879
130 Ga0207695_10000169 3300025913 Bacteria 192566
131 Ga0207695_10254345 3300025913 Bacteria 1655
132 Ga0207671_10001528 3300025914 Bacteria 26548
133 Ga0207671_10368496 3300025914 Bacteria 1140
134 Ga0207662_10297823 3300025918 Bacteria 1071
135 Ga0207650_10090427 3300025925 Bacteria 2338
136 Ga0207650_10096883 3300025925 Bacteria 2264
137 Ga0207659_10113044 3300025926 Unclassified 2067
138 Ga0207644_10176398 3300025931 Bacteria 1672
139 Ga0207644_10269188 3300025931 Unclassified 1365
140 Ga0207644_10280670 3300025931 Bacteria 1337
141 Ga0207686_10001540 3300025934 Bacteria 12993
142 Ga0207670_10005237 3300025936 Bacteria 7096
143 Ga0207670_10065249 3300025936 Unclassified 2498
144 Ga0207669_10046726 3300025937 Bacteria 2560
145 Ga0207704_10053396 3300025938 Bacteria 2456
146 Ga0207704_10169328 3300025938 Unclassified 1564
147 Ga0207691_10046997 3300025940 Bacteria 3964
148 Ga0207689_10004656 3300025942 Bacteria 12404
149 Ga0207689_10063704 3300025942 Bacteria 3033
150 Ga0207679_10073340 3300025945 Bacteria 2589
151 Ga0207651_10122809 3300025960 Bacteria 1972
152 Ga0207712_10001190 3300025961 Bacteria 17986
153 Ga0207712_10001976 3300025961 Bacteria 13441
154 Ga0207712_10067081 3300025961 Unclassified 2567
155 Ga0207712_10159051 3300025961 Bacteria 1753
156 Ga0207712_10533461 3300025961 Bacteria 1007
157 Ga0207668_10033300 3300025972 Unclassified 3413
158 Ga0207658_10052796 3300025986 Bacteria 3001
159 Ga0207658_10143737 3300025986 Unclassified 1934
160 Ga0207658_10222933 3300025986 Bacteria 1587
161 Ga0207658_10267460 3300025986 Unclassified 1460
162 Ga0207677_10023321 3300026023 Bacteria 3820
163 Ga0207677_10061615 3300026023 Bacteria 2599
164 Ga0207677_10087510 3300026023 Bacteria 2256
165 Ga0207703_10004413 3300026035 Bacteria 11566
166 Ga0207703_10014799 3300026035 Bacteria 6087
167 Ga0207639_10014285 3300026041 Bacteria 5579
168 Ga0207639_10115433 3300026041 Unclassified 2196
169 Ga0207708_10249232 3300026075 Bacteria 1431
170 Ga0207641_10000056 3300026088 Bacteria 170719
171 Ga0207641_10000448 3300026088 Bacteria 47082
172 Ga0207641_10004092 3300026088 Bacteria 12719
173 Ga0207641_10302488 3300026088 Bacteria 1511
174 Ga0207641_10884372 3300026088 Bacteria 886
175 Ga0207648_10315507 3300026089 Bacteria 1404
176 Ga0207676_10008340 3300026095 Bacteria 7365
177 Ga0207676_10036415 3300026095 Bacteria 3743
178 Ga0207674_10206992 3300026116 Bacteria 1911
179 Ga0207683_10071643 3300026121 Bacteria 3064
180 Ga0207698_10024754 3300026142 Bacteria 4219
181 Ga0268265_10239751 3300028380 Bacteria 1599
182 Ga0268264_10001196 3300028381 Bacteria 25064
183 Ga0268264_10001996 3300028381 Bacteria 18331
184 Ga0268264_10217173 3300028381 Bacteria 1758
185 Ga0307517_10012649 3300028786 Bacteria 11556
186 Ga0307515_10000078 3300028794 Bacteria 227988
187 Ga0307509_10297280 3300031507 Unclassified 1365
188 Ga0307408_100487071 3300031548 Bacteria 1077
189 Ga0307516_10000310 3300031730 Bacteria 63335
190 Ga0307413_10197361 3300031824 Bacteria 1450
191 Ga0307412_10104521 3300031911 Bacteria 2010
192 Ga0307409_100545836 3300031995 Bacteria 1137
193 Ga0307416_100423871 3300032002 Bacteria 1376
194 Ga0307414_10231531 3300032004 Bacteria 1524
195 Ga0395900_0386857 3300037418 Bacteria 1366
196 Ga0395905_0274715 3300037471 Bacteria 1571
197 Ga0439431_0069574 3300041997 Bacteria 936
198 Ga0439449_0010164 3300042007 Bacteria 3558
199 Ga0439457_004379 3300042014 Bacteria 3687
200 Ga0450922_002955 3300042124 Bacteria 1571
201 Ga0450923_017694 3300042125 Bacteria 1356
202 Ga0466968_0133442 3300044735 Bacteria 1131
203 Ga0466970_0062706 3300044765 Unclassified 1993
204 Ga0495598_0013104 3300046537 Bacteria 2049
205 Ga0495625_0079344 3300046660 Bacteria 2289
206 Ga0501290_030013 3300049513 Bacteria 776
207 Ga0501032_0050217 3300049569 Bacteria 2813
208 Ga0501034_0013997 3300049571 Bacteria 8257
209 Ga0501036_0053937 3300049572 Bacteria 3404
210 Ga0501037_0023146 3300049573 Bacteria 4595
211 Ga0501038_0180849 3300049574 Bacteria 1701
212 Ga0501043_0003586 3300049579 Bacteria 12742
213 Ga0501043_0042539 3300049579 Bacteria 3570
214 Ga0501047_0431994 3300049581 Bacteria 1148
215 Ga0501198_001838 3300049649 Bacteria 2801
216 Ga0501202_000691 3300049652 Bacteria 5040
217 Ga0501202_027003 3300049652 Bacteria 1178
218 Ga0501206_002622 3300049653 Bacteria 2261
219 Ga0501207_012349 3300049654 Unclassified 1283
220 Ga0501222_015333 3300049662 Bacteria 1013
221 Ga0501235_000263 3300049669 Bacteria 9693
222 Ga0501240_002358 3300049673 Bacteria 1995
223 Ga0501242_004705 3300049674 Bacteria 1521
224 Ga0501243_021821 3300049675 Bacteria 1059
225 Ga0501259_001694 3300049688 Bacteria 3663
226 Ga0501221_004871 3300049704 Bacteria 2233
227 Ga0501234_002619 3300049707 Bacteria 2836
228 Ga0501263_018389 3300049760 Bacteria 924
229 Ga0501035_0113402 3300049822 Bacteria 2374
230 nmdc:mga09592_26013_c1 3300050508 Bacteria 4847
231 nmdc:mga0qj67_235509_c1 3300050509 Bacteria 1486
232 nmdc:mga06r32_30631_c1 3300050510 Bacteria 5049
233 Ga0500562_000032 3300053108 Bacteria 89989
234 Ga0500559_0206156 3300053136 Bacteria 927
235 Ga0500588_0004206 3300053146 Bacteria 3103
236 Ga0500622_0007104 3300053156 Bacteria 6399
237 Ga0500645_045744 3300053730 Bacteria 1285
238 2819590390 2818991444 Bacteria 6968812
239 2929158451 2929154850 Bacteria 6753285
240 Ga0207674_10132859
241 SwRhRL2b_contig_1663676
242 rootH2_10017645
243 rootH1_10141644
244 Ga0065704_10120378
245 Ga0065712_10001214
246 Ga0065712_10006178
247 Ga0070690_100090943
248 Ga0070690_100343962
249 Ga0070670_100044364
250 Ga0070670_100556465
251 Ga0068868_100044142
252 Ga0068868_100091504
253 Ga0070689_100027827
254 Ga0070689_100082038
255 Ga0070669_100266377
256 Ga0070675_100088917
257 Ga0070675_100154051
258 Ga0070675_100740782
259 Ga0070671_100014566
260 Ga0070671_100039986
261 Ga0070671_100077956
262 Ga0070671_100731929
263 Ga0070674_100017074
264 Ga0070673_100103946
265 Ga0070673_100146368
266 Ga0070673_100163241
267 Ga0070688_100037385
268 Ga0070688_100163204
269 Ga0070667_100009672
270 Ga0070667_100026888
271 Ga0070667_100059573
272 Ga0070667_100247049
273 Ga0070685_10002638
274 Ga0070685_10045713
275 Ga0070707_100110495
276 Ga0070698_100017260
277 Ga0070698_100063639
278 Ga0070699_100388969
279 Ga0068853_100266832
280 Ga0070672_100017827
281 Ga0070672_100160560
282 Ga0070665_100457616
283 Ga0068855_100281999
284 Ga0068852_100020328
285 Ga0068859_100000007
286 Ga0068859_100007287
287 Ga0068859_100025153
288 Ga0068859_100101112
289 Ga0068859_100179319
290 Ga0068864_100024333
291 Ga0068864_100097355
292 Ga0068861_100160526
293 Ga0068870_10322786
294 Ga0068863_100002875
295 Ga0068863_100005382
296 Ga0068863_100032208
297 Ga0068863_100320091
298 Ga0068863_100440013
299 Ga0068863_100915482
300 Ga0068858_100003163
301 Ga0068858_100023266
302 Ga0068858_100119528
303 Ga0068860_100000818
304 Ga0068860_100001511
305 Ga0068860_100268781
306 Ga0068862_100263189
307 Ga0097621_100084653
308 Ga0068871_100034960
309 Ga0068871_100177570
310 Ga0075428_100040387
311 Ga0075428_100054057
312 Ga0075428_100161544
313 Ga0075430_100001247
314 Ga0075431_100012497
315 Ga0075429_100058205
316 Ga0068865_100104310
317 Ga0097620_100000007
318 Ga0097620_100007287
319 Ga0097620_100025152
320 Ga0097620_100101127
321 Ga0097620_100179323
322 Ga0105240_10000414
323 Ga0111539_10288847
324 Ga0111539_10507613
325 Ga0111539_11066809
326 Ga0105245_10365991
327 Ga0105247_10051923
328 Ga0105247_10073661
329 Ga0114129_10217470
330 Ga0114129_10727002
331 Ga0114129_10769671
332 Ga0105243_10193710
333 Ga0105241_10002507
334 Ga0105242_10001449
335 Ga0105237_10003211
336 Ga0105237_10051665
337 Ga0105249_10000678
338 Ga0105249_10034897
339 Ga0105249_10061101
340 Ga0105249_10209475
341 Ga0105239_10208224
342 Ga0105246_10076708
343 Ga0157371_10003627
344 Ga0157374_10013517
345 Ga0157374_10480111
346 Ga0157378_10002819
347 Ga0157378_10038722
348 Ga0157378_10088199
349 Ga0157378_10424115
350 Ga0163162_10000226
351 Ga0163162_10034414
352 Ga0157372_10018886
353 Ga0157372_10079354
354 Ga0157372_10406908
355 Ga0157375_10823741
356 Ga0157375_11057677
357 Ga0163163_10051376
358 Ga0163163_10489573
359 Ga0157380_10249903
360 Ga0157379_10033685
361 Ga0157376_10005378
362 Ga0157376_10153479
363 Ga0157376_10853460
364 Ga0207656_10025311
365 Ga0207682_10029767
366 Ga0207680_10000015
367 Ga0207643_10018222
368 Ga0207654_10002787
369 Ga0207695_10000169
370 Ga0207695_10254345
371 Ga0207671_10001528
372 Ga0207671_10368496
373 Ga0207662_10297823
374 Ga0207650_10090427
375 Ga0207650_10096883
376 Ga0207659_10113044
377 Ga0207644_10176398
378 Ga0207644_10269188
379 Ga0207644_10280670
380 Ga0207686_10001540
381 Ga0207670_10005237
382 Ga0207670_10065249
383 Ga0207669_10046726
384 Ga0207704_10053396
385 Ga0207704_10169328
386 Ga0207691_10046997
387 Ga0207689_10004656
388 Ga0207689_10063704
389 Ga0207679_10073340
390 Ga0207651_10122809
391 Ga0207712_10001190
392 Ga0207712_10001976
393 Ga0207712_10067081
394 Ga0207712_10159051
395 Ga0207712_10533461
396 Ga0207668_10033300
397 Ga0207658_10052796
398 Ga0207658_10143737
399 Ga0207658_10222933
400 Ga0207658_10267460
401 Ga0207677_10023321
402 Ga0207677_10061615
403 Ga0207677_10087510
404 Ga0207703_10004413
405 Ga0207703_10014799
406 Ga0207639_10014285
407 Ga0207639_10115433
408 Ga0207708_10249232
409 Ga0207641_10000056
410 Ga0207641_10000448
411 Ga0207641_10004092
412 Ga0207641_10302488
413 Ga0207641_10884372
414 Ga0207648_10315507
415 Ga0207676_10008340
416 Ga0207676_10036415
417 Ga0207674_10206992
418 Ga0207683_10071643
419 Ga0207698_10024754
420 Ga0268265_10239751
421 Ga0268264_10001196
422 Ga0268264_10001996
423 Ga0268264_10217173
424 Ga0307517_10012649
425 Ga0307515_10000078
426 Ga0307509_10297280
427 Ga0307408_100487071
428 Ga0307516_10000310
429 Ga0307413_10197361
430 Ga0307412_10104521
431 Ga0307409_100545836
432 Ga0307416_100423871
433 Ga0307414_10231531
434 Ga0395900_0386857
435 Ga0395905_0274715
436 Ga0439431_0069574
437 Ga0439449_0010164
438 Ga0439457_004379
439 Ga0450922_002955
440 Ga0450923_017694
441 Ga0466968_0133442
442 Ga0466970_0062706
443 Ga0495598_0013104
444 Ga0495625_0079344
445 Ga0501290_030013
446 Ga0501032_0050217
447 Ga0501034_0013997
448 Ga0501036_0053937
449 Ga0501037_0023146
450 Ga0501038_0180849
451 Ga0501043_0003586
452 Ga0501043_0042539
453 Ga0501047_0431994
454 Ga0501198_001838
455 Ga0501202_000691
456 Ga0501202_027003
457 Ga0501206_002622
458 Ga0501207_012349
459 Ga0501222_015333
460 Ga0501235_000263
461 Ga0501240_002358
462 Ga0501242_004705
463 Ga0501243_021821
464 Ga0501259_001694
465 Ga0501221_004871
466 Ga0501234_002619
467 Ga0501263_018389
468 Ga0501035_0113402
469 nmdc:mga09592_26013_c1
470 nmdc:mga0qj67_235509_c1
471 nmdc:mga06r32_30631_c1
472 Ga0500562_000032
473 Ga0500559_0206156
474 Ga0500588_0004206
475 Ga0500622_0007104
476 Ga0500645_045744
477 2819590390
478 2929158451

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00849

PseudoU_synth_2

RNA pseudouridylate synthase

45

199

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
2i82-assembly2.cif.gz_B crystal structure of pseudouridine synthase rlua: indirect sequence readout through protein-induced rna structure 0.8698 13 233
1v9k-assembly2.cif.gz_B the crystal structure of the catalytic domain of pseudouridine synthase rluc from escherichia coli 0.8691 15 247
1xpi-assembly2.cif.gz_B crystal structure of the catalytic domain of e. coli pseudouridine synthase rluc 0.8624 15 245
1xpi-assembly1.cif.gz_A crystal structure of the catalytic domain of e. coli pseudouridine synthase rluc 0.8596 15 246
1v9k-assembly2.cif.gz_B the crystal structure of the catalytic domain of pseudouridine synthase rluc from escherichia coli 0.8545 15 247
ID Description Score Start End Superfamily
af_O16686_148_361_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.8978 13 176 3.30.2350.10
af_Q9VKU8_216_417_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.8934 13 176 3.30.2350.10
af_Q12069_190_394_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.8903 16 176 3.30.2350.10
af_Q2FZQ6_75_272_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.8861 14 231 3.30.2350.10
af_Q2FZ78_82_304_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.8802 14 246 3.30.2350.10
ID Description Score Start End GO Terms
AF-A0A3D3AJU2-F1-model_v4 RNA pseudouridine synthase 0.9528 10 248 GO:0000455
GO:0003723
GO:0009982
GO:0140098
AF-A0A2D5VQG7-F1-model_v4 Dual-specificity RNA pseudouridine synthase RluA (EC 5.4.99.28) (EC 5.4.99.29) (23S rRNA pseudouridine(746) synthase) (Ribosomal large subunit pseudouridine synthase A) (rRNA pseudouridylate synthase A) (rRNA-uridine isomerase A) (tRNA pseudouridine(32) synthase) 0.95 12 91 GO:0000455
GO:0003723
GO:0009982
GO:0140098
AF-A0A522UGS7-F1-model_v4 Pseudouridine synthase (EC 5.4.99.-) 0.9499 10 248 GO:0000455
GO:0003723
GO:0009982
GO:0140098
AF-A0A351I1R1-F1-model_v4 RluA family pseudouridine synthase 0.9475 61 248 GO:0000455
GO:0003723
GO:0009982
GO:0140098
AF-A0A4P5T9R4-F1-model_v4 Pseudouridine synthase (EC 5.4.99.-) 0.9451 11 248 GO:0000455
GO:0003723
GO:0009982
GO:0140098

Map