F349405
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 236 | 163 | 472 | 419 |
Family's Representative Sequence
| Representative Sequence | 3300048905|Ga0496102_0031069|Ga0496102_0031069_1684_3033 |
| Length | 449 |
| Sequence | VANPVECGRLHAAGWASADPVKQKGPAVTGTIDSTLLDDLVWRGLIAHSTDPGALREALTSGSVRFYVGFDPTAPSLHMGNLVQLVTARRLQIAGHTPYVLVGGATGMIGDPKDSSERTLNSLDTVKDWSDRVRRQVEPFVRFEGSNAATIVNNYDWTASLSTIDFLRDIGKHFPVNRMLQRDVVSRRLESGISYTEFSYVLLQSMDFLSLYRDHGVTLQHGATDQWGNITAGVELIRRAEGAQAHAFVTPLITKPDGTKYGKTEGDAVWLDPEMMSPYAFHQWFLNVDDSQVGELLKIFTFLSHEEIEALEAETESEPWKRNGHKRLADEVTTFVHGVEETESAKAAAAALFGGGDLHSLSAGTLAAALREAGSTSVPALAPVVDLLVETGLAKSRGEARRTISEGGAYLNNVRVEDPDAQPGTSDLIGGSWLVLRKGKKQFAGVEVG |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300048905 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 | Metagenome | Rhizoplane |
| 2 | 3300000549 | Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled | Metagenome | Rhizosphere |
| 3 | 3300001990 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 | Metagenome | Rhizosphere |
| 4 | 3300002067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 | Metagenome | Rhizosphere |
| 5 | 3300002075 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 | Metagenome | Rhizosphere |
| 6 | 3300003373 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 | Metagenome | Rhizosphere |
| 7 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 8 | 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Metagenome | Rhizosphere |
| 9 | 3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Metagenome | Rhizosphere |
| 10 | 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Metagenome | Rhizosphere |
| 11 | 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Metagenome | Rhizosphere |
| 12 | 3300005365 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG | Metagenome | Rhizosphere |
| 13 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 14 | 3300005441 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG | Metagenome | Rhizosphere |
| 15 | 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Metagenome | Rhizosphere |
| 16 | 3300005466 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG | Metagenome | Rhizosphere |
| 17 | 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Metagenome | Rhizosphere |
| 18 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 19 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 20 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 21 | 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Metagenome | Rhizosphere |
| 22 | 3300005546 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG | Metagenome | Rhizosphere |
| 23 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 24 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 25 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 26 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 27 | 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Metagenome | Rhizosphere |
| 28 | 3300005840 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 | Metagenome | Rhizosphere |
| 29 | 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 30 | 3300005981 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 | Metagenome | Rhizosphere |
| 31 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 32 | 3300006038 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Metagenome | Endosphere |
| 33 | 3300006042 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 | Metagenome | Endosphere |
| 34 | 3300006048 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 | Metagenome | Endosphere |
| 35 | 3300006051 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 | Metagenome | Endosphere |
| 36 | 3300006178 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 | Metagenome | Endosphere |
| 37 | 3300006353 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 | Metagenome | Endosphere |
| 38 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 39 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 40 | 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Metagenome | Rhizosphere |
| 41 | 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Metagenome | Rhizosphere |
| 42 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 43 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 44 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 45 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 46 | 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Metagenome | Rhizosphere |
| 47 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 48 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 49 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 50 | 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Metagenome | Rhizosphere |
| 51 | 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Metagenome | Rhizosphere |
| 52 | 3300025901 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 53 | 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 54 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 55 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 56 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 57 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 58 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 60 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300025926 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300025981 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 68 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 72 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 74 | 3300027866 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) | Metagenome | Endosphere |
| 75 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 76 | 3300028786 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM | Metagenome | Unclassified |
| 77 | 3300031727 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 | Metagenome | Rhizosphere |
| 78 | 3300031824 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 | Metagenome | Rhizosphere |
| 79 | 3300031995 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 | Metagenome | Rhizosphere |
| 80 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 81 | 3300037853 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 | Metagenome | Unclassified |
| 82 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 83 | 3300041512 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG | Metagenome | Unclassified |
| 84 | 3300044656 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R | Metagenome | Rhizosphere |
| 85 | 3300044658 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R | Metagenome | Rhizosphere |
| 86 | 3300044683 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R | Metagenome | Rhizosphere |
| 87 | 3300044684 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R | Metagenome | Rhizosphere |
| 88 | 3300044693 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R | Metagenome | Rhizosphere |
| 89 | 3300044694 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R | Metagenome | Rhizosphere |
| 90 | 3300044735 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R | Metagenome | Rhizosphere |
| 91 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 92 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 93 | 3300045836 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R | Metagenome | Rhizosphere |
| 94 | 3300045976 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R | Metagenome | Rhizosphere |
| 95 | 3300046455 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere | Metagenome | Rhizosphere |
| 96 | 3300046459 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere | Metagenome | Rhizosphere |
| 97 | 3300046461 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere | Metagenome | Rhizosphere |
| 98 | 3300046557 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere | Metagenome | Rhizosphere |
| 99 | 3300048908 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 | Metagenome | Rhizoplane |
| 100 | 3300048910 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 | Metagenome | Rhizoplane |
| 101 | 3300048911 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled | Metagenome | Rhizoplane |
| 102 | 3300048912 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled | Metagenome | Rhizoplane |
| 103 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 104 | 3300048914 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 | Metagenome | Rhizoplane |
| 105 | 3300048916 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 | Metagenome | Rhizoplane |
| 106 | 3300048917 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 | Metagenome | Rhizoplane |
| 107 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 108 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 109 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 110 | 3300049573 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 111 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 112 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 113 | 3300049577 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 114 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 115 | 3300049580 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 116 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 117 | 3300049582 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 118 | 3300049583 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 | Metagenome | Rhizosphere |
| 119 | 3300049585 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 | Metagenome | Rhizosphere |
| 120 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 121 | 3300049587 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 | Metagenome | Rhizosphere |
| 122 | 3300049588 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 | Metagenome | Rhizosphere |
| 123 | 3300049589 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 | Metagenome | Rhizosphere |
| 124 | 3300049590 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 | Metagenome | Rhizosphere |
| 125 | 3300049591 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 | Metagenome | Rhizosphere |
| 126 | 3300049593 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 | Metagenome | Rhizosphere |
| 127 | 3300049741 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 | Metagenome | Rhizosphere |
| 128 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 129 | 3300049744 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 | Metagenome | Rhizosphere |
| 130 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 131 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 132 | 3300049824 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 133 | 3300050489 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation | Metagenome | Endosphere |
| 134 | 3300050490 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation | Metagenome | Endosphere |
| 135 | 3300050491 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation | Metagenome | Endosphere |
| 136 | 3300050492 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation | Metagenome | Endosphere |
| 137 | 3300050494 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation | Metagenome | Endosphere |
| 138 | 3300050496 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation | Metagenome | Endosphere |
| 139 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 140 | 3300053088 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere | Metagenome | Endosphere |
| 141 | 3300053094 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere | Metagenome | Endosphere |
| 142 | 3300053137 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere | Metagenome | Endosphere |
| 143 | 3300053140 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere | Metagenome | Endosphere |
| 144 | 3300054114 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 | Metagenome | Rhizosphere |
| 145 | 3300060353 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 | Metagenome | Rhizosphere |
| 146 | 2643221561 | Nocardioides sp. Root151 | Isolate | Unclassified |
| 147 | 2643221613 | Oerskovia sp. Root22 | Isolate | Unclassified |
| 148 | 2643221696 | Nocardioides sp. Root140 | Isolate | Unclassified |
| 149 | 2643221721 | Oerskovia sp. Root918 | Isolate | Unclassified |
| 150 | 2738541305 | Nocardioides sp. CF167 | Isolate | Unclassified |
| 151 | 2739367898 | Nocardioides sp. CF479 | Isolate | Unclassified |
| 152 | 2773857762 | Nocardioides sp. SAI-095 | Isolate | Unclassified |
| 153 | 2808606439 | Nocardioides sp. SLBN-172 | Isolate | Unclassified |
| 154 | 2811994874 | Nocardioides sp. SLBN-35 | Isolate | Unclassified |
| 155 | 2857481737 | Nocardioides sp. R-74106 | Isolate | Unclassified |
| 156 | 2891968417 | Nocardioides luteus SAI-037 | Isolate | Unclassified |
| 157 | 2932431166 | Cellulosimicrobium sp. 4261 | Isolate | Rhizosphere |
| 158 | 2935890801 | Oerskovia enterophila 3230 | Isolate | Rhizosphere |
| 159 | 2974315732 | Rhodococcus sp. SORGH_AS 301 | Isolate | Unclassified |
| 160 | 2984523437 | Rhodococcus sp. SORGH_AS303 | Isolate | Aerial Root |
| 161 | 2984592036 | Aeromicrobium sp. SORGH_AS981 | Isolate | Aerial Root |
| 162 | 2990256926 | Nocardioides zeae SORGH_AS885 | Isolate | Aerial Root |
| 163 | 8054609563 | Nocardioides astragali CGMCC 4.7327 | Isolate | Nodule |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 92.37 |
| Metatranscriptomes | 0 |
| Isolates | 7.63 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 1.27 |
| Bulb | 0 |
| Endosphere | 14.83 |
| Nodule | 0.42 |
| Rhizoplane | 6.78 |
| Rhizosphere | 70.34 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0.85 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0496102_0031069 | 3300048905 | Bacteria | 4787 |
| 2 | LJQas_1001180 | 3300000549 | Bacteria | 3940 |
| 3 | JGI24737J22298_10000026 | 3300001990 | Bacteria | 43680 |
| 4 | JGI24735J21928_10019686 | 3300002067 | Bacteria | 2073 |
| 5 | JGI24738J21930_10010262 | 3300002075 | Bacteria | 2087 |
| 6 | JGI25407J50210_10007915 | 3300003373 | Unclassified | 2672 |
| 7 | Ga0070658_10043833 | 3300005327 | Bacteria | 3615 |
| 8 | Ga0070683_100017206 | 3300005329 | Bacteria | 6386 |
| 9 | Ga0070680_100080008 | 3300005336 | Bacteria | 2695 |
| 10 | Ga0070682_100008981 | 3300005337 | Bacteria | 5648 |
| 11 | Ga0070682_100016958 | 3300005337 | Bacteria | 4240 |
| 12 | Ga0070675_100095450 | 3300005354 | Bacteria | 2497 |
| 13 | Ga0070688_100034753 | 3300005365 | Bacteria | 3056 |
| 14 | Ga0070659_100038937 | 3300005366 | Bacteria | 3710 |
| 15 | Ga0070700_100012062 | 3300005441 | Bacteria | 4805 |
| 16 | Ga0068867_100048461 | 3300005459 | Bacteria | 3126 |
| 17 | Ga0070685_10082938 | 3300005466 | Bacteria | 1925 |
| 18 | Ga0070685_10108738 | 3300005466 | Bacteria | 1705 |
| 19 | Ga0070698_100002288 | 3300005471 | Bacteria | 21210 |
| 20 | Ga0070679_100013836 | 3300005530 | Bacteria | 7731 |
| 21 | Ga0070684_100036667 | 3300005535 | Bacteria | 4202 |
| 22 | Ga0070684_100093643 | 3300005535 | Bacteria | 2675 |
| 23 | Ga0070684_100098430 | 3300005535 | Bacteria | 2609 |
| 24 | Ga0070684_100283474 | 3300005535 | Bacteria | 1518 |
| 25 | Ga0068853_100055087 | 3300005539 | Bacteria | 3427 |
| 26 | Ga0070672_100011271 | 3300005543 | Bacteria | 6234 |
| 27 | Ga0070696_100006783 | 3300005546 | Bacteria | 7644 |
| 28 | Ga0070665_100000582 | 3300005548 | Bacteria | 50895 |
| 29 | Ga0070665_100060250 | 3300005548 | Bacteria | 3805 |
| 30 | Ga0068855_100181948 | 3300005563 | Bacteria | 2376 |
| 31 | Ga0068857_100026514 | 3300005577 | Bacteria | 5108 |
| 32 | Ga0068852_100009713 | 3300005616 | Bacteria | 7149 |
| 33 | Ga0068861_100010339 | 3300005719 | Bacteria | 6473 |
| 34 | Ga0068870_10027926 | 3300005840 | Bacteria | 2828 |
| 35 | Ga0081455_10007359 | 3300005937 | Bacteria | 11605 |
| 36 | Ga0081538_10000387 | 3300005981 | Bacteria | 50077 |
| 37 | Ga0081539_10000354 | 3300005985 | Bacteria | 100885 |
| 38 | Ga0075365_10001364 | 3300006038 | Bacteria | 10966 |
| 39 | Ga0075365_10040114 | 3300006038 | Bacteria | 3052 |
| 40 | Ga0075365_10088824 | 3300006038 | Bacteria | 2103 |
| 41 | Ga0075365_10128058 | 3300006038 | Bacteria | 1756 |
| 42 | Ga0075365_10152772 | 3300006038 | Bacteria | 1606 |
| 43 | Ga0075368_10000981 | 3300006042 | Bacteria | 8913 |
| 44 | Ga0075368_10001621 | 3300006042 | Bacteria | 7224 |
| 45 | Ga0075363_100001402 | 3300006048 | Bacteria | 9107 |
| 46 | Ga0075363_100003630 | 3300006048 | Bacteria | 6615 |
| 47 | Ga0075364_10006842 | 3300006051 | Bacteria | 6728 |
| 48 | Ga0075364_10126338 | 3300006051 | Bacteria | 1715 |
| 49 | Ga0075367_10010431 | 3300006178 | Bacteria | 4882 |
| 50 | Ga0075367_10036018 | 3300006178 | Bacteria | 2867 |
| 51 | Ga0075370_10001390 | 3300006353 | Bacteria | 10435 |
| 52 | Ga0075370_10019211 | 3300006353 | Bacteria | 3719 |
| 53 | Ga0075428_100055325 | 3300006844 | Bacteria | 4347 |
| 54 | Ga0075428_100102385 | 3300006844 | Bacteria | 3122 |
| 55 | Ga0111539_10000590 | 3300009094 | Bacteria | 46828 |
| 56 | Ga0105245_10014049 | 3300009098 | Bacteria | 6973 |
| 57 | Ga0105242_10139426 | 3300009176 | Bacteria | 2102 |
| 58 | Ga0105248_10062797 | 3300009177 | Bacteria | 4170 |
| 59 | Ga0105238_10126878 | 3300009551 | Bacteria | 2530 |
| 60 | Ga0105249_10018120 | 3300009553 | Bacteria | 6259 |
| 61 | Ga0105249_10135419 | 3300009553 | Bacteria | 2356 |
| 62 | Ga0105249_10326413 | 3300009553 | Bacteria | 1547 |
| 63 | Ga0105239_10031004 | 3300010375 | Bacteria | 5882 |
| 64 | Ga0105246_10023098 | 3300011119 | Bacteria | 4021 |
| 65 | Ga0157369_10061064 | 3300013105 | Bacteria | 4064 |
| 66 | Ga0163162_10176372 | 3300013306 | Bacteria | 2263 |
| 67 | Ga0163163_10043017 | 3300014325 | Bacteria | 4427 |
| 68 | Ga0163163_10119461 | 3300014325 | Bacteria | 2669 |
| 69 | Ga0157380_10046205 | 3300014326 | Bacteria | 3419 |
| 70 | Ga0157376_10083952 | 3300014969 | Bacteria | 2741 |
| 71 | Ga0207688_10086597 | 3300025901 | Bacteria | 1795 |
| 72 | Ga0207647_10052620 | 3300025904 | Bacteria | 2513 |
| 73 | Ga0207647_10054119 | 3300025904 | Bacteria | 2470 |
| 74 | Ga0207705_10039481 | 3300025909 | Bacteria | 3384 |
| 75 | Ga0207671_10146406 | 3300025914 | Bacteria | 1822 |
| 76 | Ga0207660_10063458 | 3300025917 | Bacteria | 2664 |
| 77 | Ga0207657_10125485 | 3300025919 | Bacteria | 2108 |
| 78 | Ga0207652_10013082 | 3300025921 | Bacteria | 6717 |
| 79 | Ga0207646_10046977 | 3300025922 | Bacteria | 3873 |
| 80 | Ga0207694_10209379 | 3300025924 | Bacteria | 1588 |
| 81 | Ga0207659_10208439 | 3300025926 | Bacteria | 1565 |
| 82 | Ga0207687_10060178 | 3300025927 | Bacteria | 2678 |
| 83 | Ga0207691_10020207 | 3300025940 | Bacteria | 6298 |
| 84 | Ga0207661_10014981 | 3300025944 | Bacteria | 5693 |
| 85 | Ga0207661_10087515 | 3300025944 | Bacteria | 2587 |
| 86 | Ga0207667_10139533 | 3300025949 | Bacteria | 2496 |
| 87 | Ga0207640_10019796 | 3300025981 | Bacteria | 3983 |
| 88 | Ga0207703_10231120 | 3300026035 | Bacteria | 1658 |
| 89 | Ga0207639_10178734 | 3300026041 | Bacteria | 1803 |
| 90 | Ga0207678_10096240 | 3300026067 | Bacteria | 2530 |
| 91 | Ga0207678_10107104 | 3300026067 | Bacteria | 2384 |
| 92 | Ga0207708_10009484 | 3300026075 | Bacteria | 7210 |
| 93 | Ga0207648_10039020 | 3300026089 | Bacteria | 4177 |
| 94 | Ga0207674_10056178 | 3300026116 | Bacteria | 3999 |
| 95 | Ga0207675_100017415 | 3300026118 | Bacteria | 6707 |
| 96 | Ga0207675_100188025 | 3300026118 | Bacteria | 1980 |
| 97 | Ga0209813_10003640 | 3300027866 | Bacteria | 3623 |
| 98 | Ga0268266_10025605 | 3300028379 | Bacteria | 5018 |
| 99 | Ga0307517_10095088 | 3300028786 | Bacteria | 2401 |
| 100 | Ga0316576_10054159 | 3300031727 | Bacteria | 2925 |
| 101 | Ga0307413_10084493 | 3300031824 | Bacteria | 2046 |
| 102 | Ga0307409_100242505 | 3300031995 | Bacteria | 1642 |
| 103 | Ga0395900_0145724 | 3300037418 | Bacteria | 2421 |
| 104 | Ga0395900_0159107 | 3300037418 | Bacteria | 2305 |
| 105 | Ga0436364_1382790 | 3300037853 | Bacteria | 3222 |
| 106 | Ga0395901_0069601 | 3300038443 | Bacteria | 3665 |
| 107 | Ga0395901_0121434 | 3300038443 | Bacteria | 2746 |
| 108 | Ga0451853_1192760 | 3300041512 | Bacteria | 7533 |
| 109 | Ga0466969_0030069 | 3300044656 | Bacteria | 2769 |
| 110 | Ga0466972_0047811 | 3300044658 | Bacteria | 2068 |
| 111 | Ga0466965_0115506 | 3300044683 | Bacteria | 1382 |
| 112 | Ga0466966_0045197 | 3300044684 | Bacteria | 2816 |
| 113 | Ga0466961_0026013 | 3300044693 | Bacteria | 3762 |
| 114 | Ga0466961_0054910 | 3300044693 | Bacteria | 2540 |
| 115 | Ga0466963_0024283 | 3300044694 | Bacteria | 3858 |
| 116 | Ga0466963_0049847 | 3300044694 | Bacteria | 2770 |
| 117 | Ga0466963_0066401 | 3300044694 | Bacteria | 2420 |
| 118 | Ga0466968_0032452 | 3300044735 | Bacteria | 2172 |
| 119 | Ga0466970_0027964 | 3300044765 | Bacteria | 2961 |
| 120 | Ga0466959_0114552 | 3300045049 | Bacteria | 1921 |
| 121 | Ga0466958_0047174 | 3300045836 | Bacteria | 2601 |
| 122 | Ga0466967_0004504 | 3300045976 | Bacteria | 9414 |
| 123 | Ga0466967_0091157 | 3300045976 | Bacteria | 2769 |
| 124 | Ga0466967_0094968 | 3300045976 | Bacteria | 2716 |
| 125 | Ga0466967_0114743 | 3300045976 | Bacteria | 2480 |
| 126 | Ga0466967_0142048 | 3300045976 | Bacteria | 2237 |
| 127 | Ga0466967_0200339 | 3300045976 | Bacteria | 1890 |
| 128 | Ga0495603_0038695 | 3300046455 | Bacteria | 2860 |
| 129 | Ga0495629_0030468 | 3300046459 | Unclassified | 3824 |
| 130 | Ga0495641_0017567 | 3300046461 | Bacteria | 3724 |
| 131 | Ga0495622_0000082 | 3300046557 | Bacteria | 85266 |
| 132 | Ga0496105_0085928 | 3300048908 | Bacteria | 2600 |
| 133 | Ga0496107_0166808 | 3300048910 | Bacteria | 1633 |
| 134 | Ga0496108_0026209 | 3300048911 | Bacteria | 4808 |
| 135 | Ga0496108_0031641 | 3300048911 | Bacteria | 4391 |
| 136 | Ga0496108_0112706 | 3300048911 | Bacteria | 2327 |
| 137 | Ga0496109_0011921 | 3300048912 | Bacteria | 7486 |
| 138 | Ga0496109_0045627 | 3300048912 | Bacteria | 3978 |
| 139 | Ga0496109_0060389 | 3300048912 | Bacteria | 3464 |
| 140 | Ga0496110_0023777 | 3300048913 | Bacteria | 5215 |
| 141 | Ga0496110_0074656 | 3300048913 | Bacteria | 3012 |
| 142 | Ga0496110_0197202 | 3300048913 | Bacteria | 1829 |
| 143 | Ga0496111_0016902 | 3300048914 | Bacteria | 5036 |
| 144 | Ga0496113_0183372 | 3300048916 | Bacteria | 1660 |
| 145 | Ga0496114_0135567 | 3300048917 | Bacteria | 2129 |
| 146 | Ga0496114_0197869 | 3300048917 | Bacteria | 1759 |
| 147 | Ga0501033_0030388 | 3300049570 | Bacteria | 4060 |
| 148 | Ga0501033_0150058 | 3300049570 | Bacteria | 1682 |
| 149 | Ga0501034_0051240 | 3300049571 | Bacteria | 4162 |
| 150 | Ga0501034_0118956 | 3300049571 | Bacteria | 2629 |
| 151 | Ga0501036_0133118 | 3300049572 | Bacteria | 2098 |
| 152 | Ga0501037_0001409 | 3300049573 | Bacteria | 17643 |
| 153 | Ga0501037_0168582 | 3300049573 | Bacteria | 1558 |
| 154 | Ga0501038_0015754 | 3300049574 | Bacteria | 6870 |
| 155 | Ga0501038_0064305 | 3300049574 | Bacteria | 3129 |
| 156 | Ga0501039_0082867 | 3300049575 | Bacteria | 2497 |
| 157 | Ga0501039_0116497 | 3300049575 | Bacteria | 2092 |
| 158 | Ga0501041_0104181 | 3300049577 | Bacteria | 1757 |
| 159 | Ga0501043_0034185 | 3300049579 | Bacteria | 3999 |
| 160 | Ga0501046_0001825 | 3300049580 | Bacteria | 20296 |
| 161 | Ga0501046_0050998 | 3300049580 | Bacteria | 3267 |
| 162 | Ga0501047_0012797 | 3300049581 | Bacteria | 7948 |
| 163 | Ga0501047_0138221 | 3300049581 | Bacteria | 2315 |
| 164 | Ga0501048_0002332 | 3300049582 | Bacteria | 14486 |
| 165 | Ga0501048_0008105 | 3300049582 | Bacteria | 7951 |
| 166 | Ga0501067_0002555 | 3300049583 | Bacteria | 10047 |
| 167 | Ga0501069_0012947 | 3300049585 | Bacteria | 4442 |
| 168 | Ga0501069_0018866 | 3300049585 | Bacteria | 3723 |
| 169 | Ga0501070_0003425 | 3300049586 | Bacteria | 13757 |
| 170 | Ga0501070_0010200 | 3300049586 | Bacteria | 7948 |
| 171 | Ga0501070_0033514 | 3300049586 | Bacteria | 4298 |
| 172 | Ga0501070_0066352 | 3300049586 | Bacteria | 2988 |
| 173 | Ga0501071_0053775 | 3300049587 | Bacteria | 2904 |
| 174 | Ga0501071_0169769 | 3300049587 | Bacteria | 1633 |
| 175 | Ga0501072_0010153 | 3300049588 | Bacteria | 7171 |
| 176 | Ga0501072_0028084 | 3300049588 | Bacteria | 4393 |
| 177 | Ga0501073_0003662 | 3300049589 | Bacteria | 11551 |
| 178 | Ga0501074_0002317 | 3300049590 | Bacteria | 13246 |
| 179 | Ga0501074_0006933 | 3300049590 | Bacteria | 8182 |
| 180 | Ga0501074_0018075 | 3300049590 | Bacteria | 5122 |
| 181 | Ga0501075_0065058 | 3300049591 | Bacteria | 2751 |
| 182 | Ga0501077_0038182 | 3300049593 | Bacteria | 3057 |
| 183 | Ga0501079_0006554 | 3300049741 | Bacteria | 8751 |
| 184 | Ga0501080_0006887 | 3300049742 | Bacteria | 10250 |
| 185 | Ga0501080_0052387 | 3300049742 | Bacteria | 3798 |
| 186 | Ga0501080_0055322 | 3300049742 | Bacteria | 3696 |
| 187 | Ga0501080_0084888 | 3300049742 | Bacteria | 2942 |
| 188 | Ga0501080_0132997 | 3300049742 | Bacteria | 2303 |
| 189 | Ga0501080_0161787 | 3300049742 | Bacteria | 2067 |
| 190 | Ga0501083_0000725 | 3300049744 | Bacteria | 21473 |
| 191 | Ga0501083_0058175 | 3300049744 | Bacteria | 2587 |
| 192 | Ga0501035_0002242 | 3300049822 | Bacteria | 19138 |
| 193 | Ga0501035_0011381 | 3300049822 | Bacteria | 8247 |
| 194 | Ga0501044_0039787 | 3300049823 | Bacteria | 4902 |
| 195 | Ga0501044_0110939 | 3300049823 | Bacteria | 2751 |
| 196 | Ga0501045_0053174 | 3300049824 | Bacteria | 2959 |
| 197 | nmdc:mga03683_558_c1 | 3300050489 | Bacteria | 10707 |
| 198 | nmdc:mga03n38_18181_c1 | 3300050490 | Bacteria | 2770 |
| 199 | nmdc:mga03n38_27614_c1 | 3300050490 | Bacteria | 2357 |
| 200 | nmdc:mga03n38_72284_c1 | 3300050490 | Bacteria | 1599 |
| 201 | nmdc:mga00v17_15054_c1 | 3300050491 | Bacteria | 4335 |
| 202 | nmdc:mga00v17_48924_c1 | 3300050491 | Bacteria | 2563 |
| 203 | nmdc:mga00v17_72093_c1 | 3300050491 | Bacteria | 2143 |
| 204 | nmdc:mga0yw44_19221_c1 | 3300050492 | Bacteria | 3762 |
| 205 | nmdc:mga0yw44_19979_c1 | 3300050492 | Bacteria | 3707 |
| 206 | nmdc:mga0yw44_214481_c1 | 3300050492 | Bacteria | 1274 |
| 207 | nmdc:mga0yw44_3834_c1 | 3300050492 | Bacteria | 6755 |
| 208 | nmdc:mga0yw44_87849_c1 | 3300050492 | Bacteria | 1960 |
| 209 | nmdc:mga06z11_16444_c1 | 3300050494 | Bacteria | 3333 |
| 210 | nmdc:mga07m45_154206_c1 | 3300050496 | Bacteria | 1332 |
| 211 | nmdc:mga07m45_21551_c1 | 3300050496 | Bacteria | 3510 |
| 212 | nmdc:mga08y16_1472_c1 | 3300050511 | Bacteria | 23633 |
| 213 | Ga0500644_0000053 | 3300053088 | Bacteria | 69275 |
| 214 | Ga0500566_0000001 | 3300053094 | Bacteria | 1101031 |
| 215 | Ga0500561_0000001 | 3300053137 | Bacteria | 957685 |
| 216 | Ga0500573_0009615 | 3300053140 | Bacteria | 5373 |
| 217 | Ga0501084_0011212 | 3300054114 | Bacteria | 7424 |
| 218 | Ga0501082_0083645 | 3300060353 | Bacteria | 2753 |
| 219 | 2643823580 | 2643221561 | Bacteria | 4984412 |
| 220 | 2644081653 | 2643221613 | Bacteria | 4622396 |
| 221 | 2644535261 | 2643221696 | Bacteria | 5431823 |
| 222 | 2644665304 | 2643221721 | Bacteria | 4486924 |
| 223 | 2738871563 | 2738541305 | Bacteria | 4910150 |
| 224 | 2740167976 | 2739367898 | Bacteria | 4367674 |
| 225 | 2774397268 | 2773857762 | Bacteria | 5971770 |
| 226 | 2809198888 | 2808606439 | Bacteria | 5952208 |
| 227 | 2812333529 | 2811994874 | Bacteria | 5367947 |
| 228 | 2857486422 | 2857481737 | Bacteria | 4761446 |
| 229 | 2891969915 | 2891968417 | Bacteria | 5821697 |
| 230 | 2932433659 | 2932431166 | Bacteria | 4215299 |
| 231 | 2935894721 | 2935890801 | Bacteria | 4593001 |
| 232 | 2974317787 | 2974315732 | Bacteria | 4602776 |
| 233 | 2984525997 | 2984523437 | Bacteria | 4508481 |
| 234 | 2984594099 | 2984592036 | Bacteria | 3670284 |
| 235 | 2990260925 | 2990256926 | Bacteria | 4252839 |
| 236 | 8054609563 | 8054609563 | Bacteria | 5170090 |
| 237 | Ga0496102_0031069 | |||
| 238 | LJQas_1001180 | |||
| 239 | JGI24737J22298_10000026 | |||
| 240 | JGI24735J21928_10019686 | |||
| 241 | JGI24738J21930_10010262 | |||
| 242 | JGI25407J50210_10007915 | |||
| 243 | Ga0070658_10043833 | |||
| 244 | Ga0070683_100017206 | |||
| 245 | Ga0070680_100080008 | |||
| 246 | Ga0070682_100008981 | |||
| 247 | Ga0070682_100016958 | |||
| 248 | Ga0070675_100095450 | |||
| 249 | Ga0070688_100034753 | |||
| 250 | Ga0070659_100038937 | |||
| 251 | Ga0070700_100012062 | |||
| 252 | Ga0068867_100048461 | |||
| 253 | Ga0070685_10082938 | |||
| 254 | Ga0070685_10108738 | |||
| 255 | Ga0070698_100002288 | |||
| 256 | Ga0070679_100013836 | |||
| 257 | Ga0070684_100036667 | |||
| 258 | Ga0070684_100093643 | |||
| 259 | Ga0070684_100098430 | |||
| 260 | Ga0070684_100283474 | |||
| 261 | Ga0068853_100055087 | |||
| 262 | Ga0070672_100011271 | |||
| 263 | Ga0070696_100006783 | |||
| 264 | Ga0070665_100000582 | |||
| 265 | Ga0070665_100060250 | |||
| 266 | Ga0068855_100181948 | |||
| 267 | Ga0068857_100026514 | |||
| 268 | Ga0068852_100009713 | |||
| 269 | Ga0068861_100010339 | |||
| 270 | Ga0068870_10027926 | |||
| 271 | Ga0081455_10007359 | |||
| 272 | Ga0081538_10000387 | |||
| 273 | Ga0081539_10000354 | |||
| 274 | Ga0075365_10001364 | |||
| 275 | Ga0075365_10040114 | |||
| 276 | Ga0075365_10088824 | |||
| 277 | Ga0075365_10128058 | |||
| 278 | Ga0075365_10152772 | |||
| 279 | Ga0075368_10000981 | |||
| 280 | Ga0075368_10001621 | |||
| 281 | Ga0075363_100001402 | |||
| 282 | Ga0075363_100003630 | |||
| 283 | Ga0075364_10006842 | |||
| 284 | Ga0075364_10126338 | |||
| 285 | Ga0075367_10010431 | |||
| 286 | Ga0075367_10036018 | |||
| 287 | Ga0075370_10001390 | |||
| 288 | Ga0075370_10019211 | |||
| 289 | Ga0075428_100055325 | |||
| 290 | Ga0075428_100102385 | |||
| 291 | Ga0111539_10000590 | |||
| 292 | Ga0105245_10014049 | |||
| 293 | Ga0105242_10139426 | |||
| 294 | Ga0105248_10062797 | |||
| 295 | Ga0105238_10126878 | |||
| 296 | Ga0105249_10018120 | |||
| 297 | Ga0105249_10135419 | |||
| 298 | Ga0105249_10326413 | |||
| 299 | Ga0105239_10031004 | |||
| 300 | Ga0105246_10023098 | |||
| 301 | Ga0157369_10061064 | |||
| 302 | Ga0163162_10176372 | |||
| 303 | Ga0163163_10043017 | |||
| 304 | Ga0163163_10119461 | |||
| 305 | Ga0157380_10046205 | |||
| 306 | Ga0157376_10083952 | |||
| 307 | Ga0207688_10086597 | |||
| 308 | Ga0207647_10052620 | |||
| 309 | Ga0207647_10054119 | |||
| 310 | Ga0207705_10039481 | |||
| 311 | Ga0207671_10146406 | |||
| 312 | Ga0207660_10063458 | |||
| 313 | Ga0207657_10125485 | |||
| 314 | Ga0207652_10013082 | |||
| 315 | Ga0207646_10046977 | |||
| 316 | Ga0207694_10209379 | |||
| 317 | Ga0207659_10208439 | |||
| 318 | Ga0207687_10060178 | |||
| 319 | Ga0207691_10020207 | |||
| 320 | Ga0207661_10014981 | |||
| 321 | Ga0207661_10087515 | |||
| 322 | Ga0207667_10139533 | |||
| 323 | Ga0207640_10019796 | |||
| 324 | Ga0207703_10231120 | |||
| 325 | Ga0207639_10178734 | |||
| 326 | Ga0207678_10096240 | |||
| 327 | Ga0207678_10107104 | |||
| 328 | Ga0207708_10009484 | |||
| 329 | Ga0207648_10039020 | |||
| 330 | Ga0207674_10056178 | |||
| 331 | Ga0207675_100017415 | |||
| 332 | Ga0207675_100188025 | |||
| 333 | Ga0209813_10003640 | |||
| 334 | Ga0268266_10025605 | |||
| 335 | Ga0307517_10095088 | |||
| 336 | Ga0316576_10054159 | |||
| 337 | Ga0307413_10084493 | |||
| 338 | Ga0307409_100242505 | |||
| 339 | Ga0395900_0145724 | |||
| 340 | Ga0395900_0159107 | |||
| 341 | Ga0436364_1382790 | |||
| 342 | Ga0395901_0069601 | |||
| 343 | Ga0395901_0121434 | |||
| 344 | Ga0451853_1192760 | |||
| 345 | Ga0466969_0030069 | |||
| 346 | Ga0466972_0047811 | |||
| 347 | Ga0466965_0115506 | |||
| 348 | Ga0466966_0045197 | |||
| 349 | Ga0466961_0026013 | |||
| 350 | Ga0466961_0054910 | |||
| 351 | Ga0466963_0024283 | |||
| 352 | Ga0466963_0049847 | |||
| 353 | Ga0466963_0066401 | |||
| 354 | Ga0466968_0032452 | |||
| 355 | Ga0466970_0027964 | |||
| 356 | Ga0466959_0114552 | |||
| 357 | Ga0466958_0047174 | |||
| 358 | Ga0466967_0004504 | |||
| 359 | Ga0466967_0091157 | |||
| 360 | Ga0466967_0094968 | |||
| 361 | Ga0466967_0114743 | |||
| 362 | Ga0466967_0142048 | |||
| 363 | Ga0466967_0200339 | |||
| 364 | Ga0495603_0038695 | |||
| 365 | Ga0495629_0030468 | |||
| 366 | Ga0495641_0017567 | |||
| 367 | Ga0495622_0000082 | |||
| 368 | Ga0496105_0085928 | |||
| 369 | Ga0496107_0166808 | |||
| 370 | Ga0496108_0026209 | |||
| 371 | Ga0496108_0031641 | |||
| 372 | Ga0496108_0112706 | |||
| 373 | Ga0496109_0011921 | |||
| 374 | Ga0496109_0045627 | |||
| 375 | Ga0496109_0060389 | |||
| 376 | Ga0496110_0023777 | |||
| 377 | Ga0496110_0074656 | |||
| 378 | Ga0496110_0197202 | |||
| 379 | Ga0496111_0016902 | |||
| 380 | Ga0496113_0183372 | |||
| 381 | Ga0496114_0135567 | |||
| 382 | Ga0496114_0197869 | |||
| 383 | Ga0501033_0030388 | |||
| 384 | Ga0501033_0150058 | |||
| 385 | Ga0501034_0051240 | |||
| 386 | Ga0501034_0118956 | |||
| 387 | Ga0501036_0133118 | |||
| 388 | Ga0501037_0001409 | |||
| 389 | Ga0501037_0168582 | |||
| 390 | Ga0501038_0015754 | |||
| 391 | Ga0501038_0064305 | |||
| 392 | Ga0501039_0082867 | |||
| 393 | Ga0501039_0116497 | |||
| 394 | Ga0501041_0104181 | |||
| 395 | Ga0501043_0034185 | |||
| 396 | Ga0501046_0001825 | |||
| 397 | Ga0501046_0050998 | |||
| 398 | Ga0501047_0012797 | |||
| 399 | Ga0501047_0138221 | |||
| 400 | Ga0501048_0002332 | |||
| 401 | Ga0501048_0008105 | |||
| 402 | Ga0501067_0002555 | |||
| 403 | Ga0501069_0012947 | |||
| 404 | Ga0501069_0018866 | |||
| 405 | Ga0501070_0003425 | |||
| 406 | Ga0501070_0010200 | |||
| 407 | Ga0501070_0033514 | |||
| 408 | Ga0501070_0066352 | |||
| 409 | Ga0501071_0053775 | |||
| 410 | Ga0501071_0169769 | |||
| 411 | Ga0501072_0010153 | |||
| 412 | Ga0501072_0028084 | |||
| 413 | Ga0501073_0003662 | |||
| 414 | Ga0501074_0002317 | |||
| 415 | Ga0501074_0006933 | |||
| 416 | Ga0501074_0018075 | |||
| 417 | Ga0501075_0065058 | |||
| 418 | Ga0501077_0038182 | |||
| 419 | Ga0501079_0006554 | |||
| 420 | Ga0501080_0006887 | |||
| 421 | Ga0501080_0052387 | |||
| 422 | Ga0501080_0055322 | |||
| 423 | Ga0501080_0084888 | |||
| 424 | Ga0501080_0132997 | |||
| 425 | Ga0501080_0161787 | |||
| 426 | Ga0501083_0000725 | |||
| 427 | Ga0501083_0058175 | |||
| 428 | Ga0501035_0002242 | |||
| 429 | Ga0501035_0011381 | |||
| 430 | Ga0501044_0039787 | |||
| 431 | Ga0501044_0110939 | |||
| 432 | Ga0501045_0053174 | |||
| 433 | nmdc:mga03683_558_c1 | |||
| 434 | nmdc:mga03n38_18181_c1 | |||
| 435 | nmdc:mga03n38_27614_c1 | |||
| 436 | nmdc:mga03n38_72284_c1 | |||
| 437 | nmdc:mga00v17_15054_c1 | |||
| 438 | nmdc:mga00v17_48924_c1 | |||
| 439 | nmdc:mga00v17_72093_c1 | |||
| 440 | nmdc:mga0yw44_19221_c1 | |||
| 441 | nmdc:mga0yw44_19979_c1 | |||
| 442 | nmdc:mga0yw44_214481_c1 | |||
| 443 | nmdc:mga0yw44_3834_c1 | |||
| 444 | nmdc:mga0yw44_87849_c1 | |||
| 445 | nmdc:mga06z11_16444_c1 | |||
| 446 | nmdc:mga07m45_154206_c1 | |||
| 447 | nmdc:mga07m45_21551_c1 | |||
| 448 | nmdc:mga08y16_1472_c1 | |||
| 449 | Ga0500644_0000053 | |||
| 450 | Ga0500566_0000001 | |||
| 451 | Ga0500561_0000001 | |||
| 452 | Ga0500573_0009615 | |||
| 453 | Ga0501084_0011212 | |||
| 454 | Ga0501082_0083645 | |||
| 455 | 2643823580 | |||
| 456 | 2644081653 | |||
| 457 | 2644535261 | |||
| 458 | 2644665304 | |||
| 459 | 2738871563 | |||
| 460 | 2740167976 | |||
| 461 | 2774397268 | |||
| 462 | 2809198888 | |||
| 463 | 2812333529 | |||
| 464 | 2857486422 | |||
| 465 | 2891969915 | |||
| 466 | 2932433659 | |||
| 467 | 2935894721 | |||
| 468 | 2974317787 | |||
| 469 | 2984525997 | |||
| 470 | 2984594099 | |||
| 471 | 2990260925 | |||
| 472 | 8054609563 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 2jan-assembly2.cif.gz_B | tyrosyl-trna synthetase from mycobacterium tuberculosis in unliganded state | 0.9248 | 8 | 424 |
| 1tya-assembly1.cif.gz_E-2 | structural analysis of a series of mutants of tyrosyl-trna synthetase: enhancement of catalysis by hydrophobic interactions | 0.924 | 6 | 318 |
| 1tyd-assembly1.cif.gz_E-2 | structure of tyrosyl-trna synthetase refined at 2.3 angstroms resolution. interaction of the enzyme with the tyrosyl adenylate intermediate | 0.9235 | 6 | 318 |
| 2ts1-assembly1.cif.gz_A | structure of tyrosyl-t/rna synthetase refined at 2.3 angstroms resolution. interaction of the enzyme with the tyrosyl adenylate intermediate | 0.9235 | 6 | 318 |
| 1tyc-assembly1.cif.gz_A-2 | structural analysis of a series of mutants of tyrosyl-trna synthetase: enhancement of catalysis by hydrophobic interactions | 0.9232 | 6 | 318 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 3zxiB02 | Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase | 0.9578 | 241 | 318 | 1.10.240.10 |
| 2pidA02 | Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase | 0.95 | 241 | 323 | 1.10.240.10 |
| 2pidB02 | Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase | 0.9498 | 241 | 323 | 1.10.240.10 |
| 2janC03 | Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain | 0.9391 | 324 | 424 | 3.10.290.10 |
| 4ts1B02 | Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase | 0.9348 | 224 | 311 | 1.10.240.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A3L7LTY5-F1-model_v4 | Tyrosine--tRNA ligase | 0.9641 | 345 | 424 |
GO:0003723
GO:0016874 |
| AF-A0A378B2Y2-F1-model_v4 | Tyrosyl-tRNA synthetase (EC 6.1.1.1) | 0.9589 | 346 | 424 |
GO:0003723
GO:0004831 |
| AF-A0A3B8Q0G1-F1-model_v4 | Tyrosine--tRNA ligase (EC 6.1.1.1) | 0.9516 | 357 | 422 |
GO:0003723
GO:0004831 |
| AF-A0A5D0IME9-F1-model_v4 | Tyrosine--tRNA ligase (EC 6.1.1.1) | 0.949 | 182 | 302 |
GO:0004831
GO:0005524 GO:0005829 GO:0006437 |
| AF-A0A4D4LE74-F1-model_v4 | Tyrosine--tRNA ligase (EC 6.1.1.1) | 0.9479 | 6 | 130 |
GO:0004831
GO:0005524 GO:0005829 GO:0006437 |