F348381

General Info

Members Datasets Scaffolds Average Seq Length
235 114 470 337

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0012581|Ga0453684_0012581_5738_6832
Length 364
Sequence MIFVSFLFFVKSPHFIRFVSRIKGPYMKEQIEAILQNALSELQGASSEEAIQAVRVRYLGKKGELTAIKKSLGALSTDERPVIGQAVNRVSEELLEKIEAALASDRDNRKMESLRSERLDVTLPGRARMLGSKHPITLVTEEIAAIFAGLGFQVAEGPEVELDFYNFEALNFPKDHPARDMQDTFFVDDKTLLRTHTSPVQVRTMLQQPPPVRIIAPGTVYRCDSDATHSPMFHQVEGLMVDKGITFGDLKGTLTIFVNQLFGKDIGVRLRPSFFPFTEPSAEVDIACVICKGKGCRVCKHSGWLEILGAGMVDPEVYRHVGYDAGSVTGFAFGMGIERIAMLKYGISDMRLLFENDLRFLRQF

Samples

Sample ID Description Type Environment
1 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
5 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
8 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
9 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
10 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
13 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
14 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
15 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
22 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
23 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
24 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
25 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
28 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
29 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
30 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
31 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
32 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
44 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
45 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
46 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
47 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
48 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
49 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
50 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
51 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
52 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
53 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
54 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
55 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
56 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
57 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
58 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
59 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
60 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
61 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
62 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
63 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
64 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
65 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
66 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
67 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
68 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
69 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
70 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
71 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
72 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
73 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
74 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
75 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
76 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
77 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
78 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
79 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
80 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
81 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
82 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
83 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
84 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
85 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
86 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
87 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
88 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
89 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
90 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
91 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
92 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
93 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
94 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
101 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
102 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
103 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
104 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
105 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
106 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
107 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
108 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
110 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
111 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
112 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
113 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
114 8015556637 Bdellovibrio reynosensis LBG001 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.72
Metatranscriptomes 0.85
Isolates 0.43

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 2.55
Rhizosphere 91.91
Stem 0
Stem Tuber 0
Unclassified 0.43

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0453684_0012581 3300044712 Bacteria 13925
2 SwRhRL2b_contig_1693732 2162886007 Bacteria 279526
3 rootL2_10141393 3300003322 Bacteria 5302
4 JGI25405J52794_10002124 3300003911 Bacteria 3372
5 Ga0065704_10070142 3300005289 Bacteria 354388
6 Ga0070658_10185711 3300005327 Bacteria 1751
7 Ga0070690_100129083 3300005330 Bacteria 1705
8 Ga0070680_100081468 3300005336 Bacteria 2670
9 Ga0070689_100270273 3300005340 Bacteria 1407
10 Ga0070708_100020383 3300005445 Bacteria 5590
11 Ga0070708_100123418 3300005445 Bacteria 2391
12 Ga0070681_10028261 3300005458 Bacteria 5637
13 Ga0070681_10079712 3300005458 Bacteria 3230
14 Ga0070685_10003820 3300005466 Bacteria 7621
15 Ga0070706_100000181 3300005467 Bacteria 79696
16 Ga0070706_100003511 3300005467 Bacteria 15410
17 Ga0070707_100050616 3300005468 Bacteria 3982
18 Ga0070699_100185103 3300005518 Bacteria 1849
19 Ga0070679_100027183 3300005530 Bacteria 5628
20 Ga0070679_100035700 3300005530 Bacteria 4932
21 Ga0070679_100052369 3300005530 Bacteria 4066
22 Ga0070697_100004183 3300005536 Bacteria 11062
23 Ga0070665_100000137 3300005548 Bacteria 137413
24 Ga0070704_100373238 3300005549 Bacteria 1210
25 Ga0068855_100397749 3300005563 Bacteria 1510
26 Ga0068856_100008830 3300005614 Bacteria 9806
27 Ga0068860_100001937 3300005843 Bacteria 21898
28 Ga0068860_100005025 3300005843 Bacteria 13457
29 Ga0068871_100369218 3300006358 Bacteria 1272
30 Ga0075428_100004786 3300006844 Bacteria 14998
31 Ga0075428_100087620 3300006844 Bacteria 3396
32 Ga0075431_100042613 3300006847 Bacteria 4682
33 Ga0105240_10117447 3300009093 Bacteria 3207
34 Ga0105239_10029572 3300010375 Bacteria 6024
35 Ga0157372_10218953 3300013307 Bacteria 2207
36 Ga0157379_10000111 3300014968 Bacteria 56459
37 Ga0157376_10000972 3300014969 Bacteria 18685
38 Ga0213875_10000066 3300021388 Bacteria 127864
39 Ga0207684_10000009 3300025910 Bacteria 572126
40 Ga0207684_10000122 3300025910 Bacteria 142635
41 Ga0207707_10114066 3300025912 Bacteria 2362
42 Ga0207660_10039946 3300025917 Bacteria 3282
43 Ga0207662_10208225 3300025918 Bacteria 1269
44 Ga0207652_10056296 3300025921 Bacteria 3385
45 Ga0207652_10253738 3300025921 Bacteria 1586
46 Ga0207702_10011197 3300026078 Bacteria 7481
47 Ga0207674_10050036 3300026116 Bacteria 4271
48 Ga0207683_10050608 3300026121 Bacteria 3640
49 Ga0209588_1000013 3300027671 Bacteria 137762
50 Ga0268266_10015474 3300028379 Bacteria 6546
51 Ga0268264_10009986 3300028381 Bacteria 7860
52 Ga0265322_10018646 3300028654 Bacteria 1994
53 Ga0265338_10002577 3300028800 Bacteria 26786
54 Ga0265327_10002339 3300031251 Bacteria 20220
55 Ga0265327_10096627 3300031251 Bacteria 1432
56 Ga0265316_10000146 3300031344 Bacteria 77550
57 Ga0265316_10000972 3300031344 Bacteria 31191
58 Ga0265316_10053824 3300031344 Bacteria 3153
59 Ga0307509_10035231 3300031507 Bacteria 5496
60 Ga0316575_10000034 3300031665 Bacteria 33134
61 Ga0316575_10019921 3300031665 Bacteria 2569
62 Ga0316575_10041024 3300031665 Bacteria 1830
63 Ga0316579_10005338 3300031691 Bacteria 5178
64 Ga0265342_10120902 3300031712 Bacteria 1475
65 Ga0316576_10003199 3300031727 Bacteria 9545
66 Ga0316576_10010664 3300031727 Bacteria 5985
67 Ga0316576_10149099 3300031727 Bacteria 1763
68 Ga0316578_10000023 3300031728 Bacteria 30681
69 Ga0316577_10011030 3300031733 Bacteria 4888
70 Ga0316577_10029975 3300031733 Bacteria 3036
71 Ga0316577_10126192 3300031733 Bacteria 1439
72 Ga0307411_10000332 3300032005 Bacteria 15825
73 Ga0316583_10000326 3300032133 Bacteria 13434
74 Ga0316583_10000953 3300032133 Bacteria 9307
75 Ga0316583_10025486 3300032133 Bacteria 2112
76 Ga0316583_10036174 3300032133 Bacteria 1752
77 Ga0316585_10031011 3300032137 Bacteria 1679
78 Ga0316580_10031444 3300032139 Bacteria 1643
79 Ga0316593_10005225 3300032168 Bacteria 3404
80 Ga0316596_1000599 3300033541 Bacteria 6357
81 Ga0373928_0001824 3300035084 Bacteria 4149
82 Ga0316574_0000198 3300035398 Bacteria 20976
83 Ga0316574_0008420 3300035398 Bacteria 5725
84 Ga0373947_0009585 3300035725 Bacteria 5558
85 Ga0316582_0000378 3300036647 Bacteria 16038
86 Ga0316582_0007512 3300036647 Bacteria 5807
87 Ga0316582_0008854 3300036647 Bacteria 5428
88 Ga0316582_0020146 3300036647 Bacteria 3917
89 Ga0316582_0052109 3300036647 Bacteria 2600
90 Ga0316582_0117646 3300036647 Bacteria 1775
91 Ga0316582_0163458 3300036647 Bacteria 1509
92 Ga0316584_0000703 3300036712 Bacteria 18561
93 Ga0316584_0002080 3300036712 Bacteria 12539
94 Ga0373925_0051440 3300037068 Bacteria 3075
95 Ga0395900_0044025 3300037418 Bacteria 4601
96 Ga0395905_0000072 3300037471 Bacteria 172556
97 Ga0395905_0000884 3300037471 Bacteria 39079
98 Ga0395905_0006314 3300037471 Bacteria 11946
99 Ga0395905_0069808 3300037471 Bacteria 3291
100 Ga0316581_0001335 3300037588 Bacteria 5480
101 Ga0316581_0023155 3300037588 Bacteria 1836
102 Ga0436364_0079644 3300037853 Bacteria 315114
103 Ga0400490_16349 3300038726 Bacteria 1045
104 Ga0400483_025368 3300039062 Bacteria 10003
105 Ga0400483_074345 3300039062 Bacteria 2632
106 Ga0400483_158304 3300039062 Bacteria 1517
107 Ga0400489_00918 3300039093 Bacteria 1482
108 Ga0436360_0023758 3300039438 Bacteria 1256
109 Ga0451795_0773115 3300041456 Bacteria 1312
110 Ga0451577_0000033 3300042876 Bacteria 378714
111 Ga0451577_0000035 3300042876 Bacteria 373467
112 Ga0451577_0001455 3300042876 Bacteria 31470
113 Ga0451577_0005901 3300042876 Bacteria 12365
114 Ga0451577_0005950 3300042876 Bacteria 12301
115 Ga0451577_0014478 3300042876 Bacteria 7353
116 Ga0451577_0033788 3300042876 Bacteria 4612
117 Ga0451577_0039562 3300042876 Bacteria 4237
118 Ga0451577_0044277 3300042876 Bacteria 3985
119 Ga0451577_0058937 3300042876 Bacteria 3423
120 Ga0451577_0066543 3300042876 Bacteria 3214
121 Ga0451577_0074130 3300042876 Bacteria 3036
122 Ga0451577_0091499 3300042876 Bacteria 2715
123 Ga0451577_0159139 3300042876 Bacteria 2033
124 Ga0451577_0304447 3300042876 Bacteria 1444
125 Ga0466969_0013663 3300044656 Bacteria 4273
126 Ga0453683_0000002 3300044673 Bacteria 1244396
127 Ga0453683_0000035 3300044673 Bacteria 234280
128 Ga0453683_0000048 3300044673 Bacteria 207480
129 Ga0453683_0000058 3300044673 Bacteria 189089
130 Ga0453683_0000067 3300044673 Bacteria 164438
131 Ga0453683_0000236 3300044673 Bacteria 73105
132 Ga0453683_0000776 3300044673 Bacteria 31663
133 Ga0453683_0001054 3300044673 Bacteria 25626
134 Ga0453683_0001452 3300044673 Bacteria 20459
135 Ga0453683_0002132 3300044673 Bacteria 15770
136 Ga0453683_0003822 3300044673 Bacteria 10953
137 Ga0453683_0005005 3300044673 Bacteria 9311
138 Ga0453683_0005568 3300044673 Bacteria 8764
139 Ga0453683_0007595 3300044673 Bacteria 7346
140 Ga0453683_0023400 3300044673 Bacteria 3938
141 Ga0453683_0024172 3300044673 Bacteria 3869
142 Ga0453683_0025880 3300044673 Bacteria 3725
143 Ga0453683_0041986 3300044673 Bacteria 2872
144 Ga0453683_0063160 3300044673 Bacteria 2315
145 Ga0453683_0084075 3300044673 Bacteria 1994
146 Ga0453684_0000097 3300044712 Bacteria 377772
147 Ga0453684_0000109 3300044712 Bacteria 361015
148 Ga0453684_0000209 3300044712 Bacteria 255543
149 Ga0453684_0000338 3300044712 Bacteria 194302
150 Ga0453684_0000912 3300044712 Bacteria 98180
151 Ga0453684_0002386 3300044712 Bacteria 45826
152 Ga0453684_0004226 3300044712 Bacteria 30795
153 Ga0453684_0005458 3300044712 Bacteria 25173
154 Ga0453684_0014570 3300044712 Bacteria 12555
155 Ga0453684_0020308 3300044712 Bacteria 10029
156 Ga0453684_0020888 3300044712 Bacteria 9827
157 Ga0453684_0022329 3300044712 Bacteria 9394
158 Ga0453684_0023712 3300044712 Bacteria 9014
159 Ga0453684_0031667 3300044712 Bacteria 7425
160 Ga0453684_0037484 3300044712 Bacteria 6653
161 Ga0453684_0040750 3300044712 Bacteria 6301
162 Ga0453684_0044199 3300044712 Bacteria 5968
163 Ga0453684_0058214 3300044712 Bacteria 4993
164 Ga0453684_0063018 3300044712 Bacteria 4745
165 Ga0453684_0070469 3300044712 Bacteria 4427
166 Ga0453684_0072732 3300044712 Bacteria 4338
167 Ga0453684_0098443 3300044712 Bacteria 3585
168 Ga0453684_0149751 3300044712 Bacteria 2774
169 Ga0453684_0168607 3300044712 Bacteria 2582
170 Ga0453684_0199780 3300044712 Bacteria 2331
171 Ga0453684_0274170 3300044712 Bacteria 1926
172 Ga0453684_0315858 3300044712 Bacteria 1771
173 Ga0453684_0317960 3300044712 Bacteria 1764
174 Ga0466959_0076687 3300045049 Bacteria 2413
175 Ga0451576_0000008 3300045051 Bacteria 746156
176 Ga0451576_0000223 3300045051 Bacteria 139383
177 Ga0451576_0000303 3300045051 Bacteria 119347
178 Ga0451576_0000476 3300045051 Bacteria 90137
179 Ga0451576_0001192 3300045051 Bacteria 46524
180 Ga0451576_0002593 3300045051 Bacteria 26568
181 Ga0451576_0002682 3300045051 Bacteria 25918
182 Ga0451576_0003208 3300045051 Bacteria 22810
183 Ga0451576_0004012 3300045051 Bacteria 19588
184 Ga0451576_0005454 3300045051 Bacteria 15953
185 Ga0451576_0020738 3300045051 Bacteria 7153
186 Ga0451576_0043831 3300045051 Bacteria 4719
187 Ga0451576_0062713 3300045051 Bacteria 3875
188 Ga0451576_0078251 3300045051 Bacteria 3442
189 Ga0451576_0084696 3300045051 Bacteria 3298
190 Ga0451576_0115354 3300045051 Bacteria 2796
191 Ga0451576_0117799 3300045051 Bacteria 2765
192 Ga0451576_0123691 3300045051 Bacteria 2694
193 Ga0451576_0196604 3300045051 Bacteria 2106
194 Ga0451576_0205827 3300045051 Bacteria 2055
195 Ga0451576_0209737 3300045051 Bacteria 2034
196 Ga0451576_0573758 3300045051 Unclassified 1185
197 Ga0495580_0001954 3300046472 Bacteria 18094
198 Ga0495652_0135810 3300046529 Bacteria 1941
199 Ga0495656_0003445 3300046615 Bacteria 5349
200 Ga0495588_0025778 3300046674 Bacteria 2932
201 Ga0495646_0104146 3300046680 Bacteria 1623
202 Ga0495613_0207299 3300046689 Bacteria 1380
203 Ga0496102_0224777 3300048905 Bacteria 1770
204 Ga0496110_0002721 3300048913 Bacteria 13352
205 Ga0496110_0025593 3300048913 Bacteria 5044
206 Ga0496112_0095329 3300048915 Bacteria 2946
207 Ga0496114_0233960 3300048917 Bacteria 1614
208 Ga0496121_0170599 3300048924 Bacteria 1581
209 Ga0496124_0000005 3300048927 Bacteria 922323
210 Ga0496125_0123272 3300048928 Bacteria 1843
211 Ga0496126_0004934 3300048929 Bacteria 15572
212 Ga0501031_0182707 3300049568 Bacteria 1370
213 Ga0501032_0000541 3300049569 Bacteria 30627
214 Ga0501032_0221194 3300049569 Bacteria 1232
215 Ga0501034_0086330 3300049571 Bacteria 3139
216 Ga0501037_0007553 3300049573 Bacteria 7960
217 Ga0501041_0013076 3300049577 Bacteria 4919
218 Ga0501043_0000655 3300049579 Bacteria 30527
219 Ga0501072_0058382 3300049588 Bacteria 3041
220 Ga0501074_0041846 3300049590 Bacteria 3316
221 Ga0501074_0098917 3300049590 Bacteria 2088
222 Ga0501075_0280165 3300049591 Bacteria 1270
223 Ga0501076_0094571 3300049592 Bacteria 2406
224 Ga0501077_0007758 3300049593 Bacteria 6622
225 Ga0501080_0068201 3300049742 Bacteria 3309
226 Ga0501081_0174590 3300049743 Bacteria 1552
227 Ga0501083_0155195 3300049744 Bacteria 1499
228 Ga0501035_0000148 3300049822 Bacteria 85575
229 Ga0501045_0110049 3300049824 Bacteria 2042
230 nmdc:mga0qj67_46556_c1 3300050509 Bacteria 3424
231 nmdc:mga06r32_146818_c1 3300050510 Bacteria 2336
232 nmdc:mga06r32_53950_c1 3300050510 Bacteria 3853
233 Ga0501084_0145892 3300054114 Bacteria 1993
234 Ga0501082_0007841 3300060353 Bacteria 9213
235 8015557626 8015556637 Bacteria 3582323
236 Ga0453684_0012581
237 SwRhRL2b_contig_1693732
238 rootL2_10141393
239 JGI25405J52794_10002124
240 Ga0065704_10070142
241 Ga0070658_10185711
242 Ga0070690_100129083
243 Ga0070680_100081468
244 Ga0070689_100270273
245 Ga0070708_100020383
246 Ga0070708_100123418
247 Ga0070681_10028261
248 Ga0070681_10079712
249 Ga0070685_10003820
250 Ga0070706_100000181
251 Ga0070706_100003511
252 Ga0070707_100050616
253 Ga0070699_100185103
254 Ga0070679_100027183
255 Ga0070679_100035700
256 Ga0070679_100052369
257 Ga0070697_100004183
258 Ga0070665_100000137
259 Ga0070704_100373238
260 Ga0068855_100397749
261 Ga0068856_100008830
262 Ga0068860_100001937
263 Ga0068860_100005025
264 Ga0068871_100369218
265 Ga0075428_100004786
266 Ga0075428_100087620
267 Ga0075431_100042613
268 Ga0105240_10117447
269 Ga0105239_10029572
270 Ga0157372_10218953
271 Ga0157379_10000111
272 Ga0157376_10000972
273 Ga0213875_10000066
274 Ga0207684_10000009
275 Ga0207684_10000122
276 Ga0207707_10114066
277 Ga0207660_10039946
278 Ga0207662_10208225
279 Ga0207652_10056296
280 Ga0207652_10253738
281 Ga0207702_10011197
282 Ga0207674_10050036
283 Ga0207683_10050608
284 Ga0209588_1000013
285 Ga0268266_10015474
286 Ga0268264_10009986
287 Ga0265322_10018646
288 Ga0265338_10002577
289 Ga0265327_10002339
290 Ga0265327_10096627
291 Ga0265316_10000146
292 Ga0265316_10000972
293 Ga0265316_10053824
294 Ga0307509_10035231
295 Ga0316575_10000034
296 Ga0316575_10019921
297 Ga0316575_10041024
298 Ga0316579_10005338
299 Ga0265342_10120902
300 Ga0316576_10003199
301 Ga0316576_10010664
302 Ga0316576_10149099
303 Ga0316578_10000023
304 Ga0316577_10011030
305 Ga0316577_10029975
306 Ga0316577_10126192
307 Ga0307411_10000332
308 Ga0316583_10000326
309 Ga0316583_10000953
310 Ga0316583_10025486
311 Ga0316583_10036174
312 Ga0316585_10031011
313 Ga0316580_10031444
314 Ga0316593_10005225
315 Ga0316596_1000599
316 Ga0373928_0001824
317 Ga0316574_0000198
318 Ga0316574_0008420
319 Ga0373947_0009585
320 Ga0316582_0000378
321 Ga0316582_0007512
322 Ga0316582_0008854
323 Ga0316582_0020146
324 Ga0316582_0052109
325 Ga0316582_0117646
326 Ga0316582_0163458
327 Ga0316584_0000703
328 Ga0316584_0002080
329 Ga0373925_0051440
330 Ga0395900_0044025
331 Ga0395905_0000072
332 Ga0395905_0000884
333 Ga0395905_0006314
334 Ga0395905_0069808
335 Ga0316581_0001335
336 Ga0316581_0023155
337 Ga0436364_0079644
338 Ga0400490_16349
339 Ga0400483_025368
340 Ga0400483_074345
341 Ga0400483_158304
342 Ga0400489_00918
343 Ga0436360_0023758
344 Ga0451795_0773115
345 Ga0451577_0000033
346 Ga0451577_0000035
347 Ga0451577_0001455
348 Ga0451577_0005901
349 Ga0451577_0005950
350 Ga0451577_0014478
351 Ga0451577_0033788
352 Ga0451577_0039562
353 Ga0451577_0044277
354 Ga0451577_0058937
355 Ga0451577_0066543
356 Ga0451577_0074130
357 Ga0451577_0091499
358 Ga0451577_0159139
359 Ga0451577_0304447
360 Ga0466969_0013663
361 Ga0453683_0000002
362 Ga0453683_0000035
363 Ga0453683_0000048
364 Ga0453683_0000058
365 Ga0453683_0000067
366 Ga0453683_0000236
367 Ga0453683_0000776
368 Ga0453683_0001054
369 Ga0453683_0001452
370 Ga0453683_0002132
371 Ga0453683_0003822
372 Ga0453683_0005005
373 Ga0453683_0005568
374 Ga0453683_0007595
375 Ga0453683_0023400
376 Ga0453683_0024172
377 Ga0453683_0025880
378 Ga0453683_0041986
379 Ga0453683_0063160
380 Ga0453683_0084075
381 Ga0453684_0000097
382 Ga0453684_0000109
383 Ga0453684_0000209
384 Ga0453684_0000338
385 Ga0453684_0000912
386 Ga0453684_0002386
387 Ga0453684_0004226
388 Ga0453684_0005458
389 Ga0453684_0014570
390 Ga0453684_0020308
391 Ga0453684_0020888
392 Ga0453684_0022329
393 Ga0453684_0023712
394 Ga0453684_0031667
395 Ga0453684_0037484
396 Ga0453684_0040750
397 Ga0453684_0044199
398 Ga0453684_0058214
399 Ga0453684_0063018
400 Ga0453684_0070469
401 Ga0453684_0072732
402 Ga0453684_0098443
403 Ga0453684_0149751
404 Ga0453684_0168607
405 Ga0453684_0199780
406 Ga0453684_0274170
407 Ga0453684_0315858
408 Ga0453684_0317960
409 Ga0466959_0076687
410 Ga0451576_0000008
411 Ga0451576_0000223
412 Ga0451576_0000303
413 Ga0451576_0000476
414 Ga0451576_0001192
415 Ga0451576_0002593
416 Ga0451576_0002682
417 Ga0451576_0003208
418 Ga0451576_0004012
419 Ga0451576_0005454
420 Ga0451576_0020738
421 Ga0451576_0043831
422 Ga0451576_0062713
423 Ga0451576_0078251
424 Ga0451576_0084696
425 Ga0451576_0115354
426 Ga0451576_0117799
427 Ga0451576_0123691
428 Ga0451576_0196604
429 Ga0451576_0205827
430 Ga0451576_0209737
431 Ga0451576_0573758
432 Ga0495580_0001954
433 Ga0495652_0135810
434 Ga0495656_0003445
435 Ga0495588_0025778
436 Ga0495646_0104146
437 Ga0495613_0207299
438 Ga0496102_0224777
439 Ga0496110_0002721
440 Ga0496110_0025593
441 Ga0496112_0095329
442 Ga0496114_0233960
443 Ga0496121_0170599
444 Ga0496124_0000005
445 Ga0496125_0123272
446 Ga0496126_0004934
447 Ga0501031_0182707
448 Ga0501032_0000541
449 Ga0501032_0221194
450 Ga0501034_0086330
451 Ga0501037_0007553
452 Ga0501041_0013076
453 Ga0501043_0000655
454 Ga0501072_0058382
455 Ga0501074_0041846
456 Ga0501074_0098917
457 Ga0501075_0280165
458 Ga0501076_0094571
459 Ga0501077_0007758
460 Ga0501080_0068201
461 Ga0501081_0174590
462 Ga0501083_0155195
463 Ga0501035_0000148
464 Ga0501045_0110049
465 nmdc:mga0qj67_46556_c1
466 nmdc:mga06r32_146818_c1
467 nmdc:mga06r32_53950_c1
468 Ga0501084_0145892
469 Ga0501082_0007841
470 8015557626

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01409

tRNA-synt_2d

tRNA synthetases class II core domain (F)

118

364

0.99

PF02912

Phe_tRNA-synt_N

Aminoacyl tRNA synthetase class II, N-terminal domain

46

114

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
6p24-assembly1.cif.gz_A escherichia coli trna synthetase 0.9565 91 339
4p75-assembly1.cif.gz_C phers in complex with compound 4a 0.95 91 339
4p75-assembly1.cif.gz_C phers in complex with compound 4a 0.9461 91 339
6p8t-assembly1.cif.gz_D acinetobacter baumannii trna synthetase in complex with compound 1 0.9412 93 339
6p24-assembly1.cif.gz_A escherichia coli trna synthetase 0.941 91 339
ID Description Score Start End Superfamily
4p73C01 Alpha Beta;2-Layer Sandwich;BirA Bifunctional Protein; domain 2;Bira Bifunctional Protein; Domain 2 0.9617 107 339 3.30.930.10
4p73C01 Alpha Beta;2-Layer Sandwich;BirA Bifunctional Protein; domain 2;Bira Bifunctional Protein; Domain 2 0.9575 107 339 3.30.930.10
af_Q94K73_217_334_3.30.930.10 Alpha Beta;2-Layer Sandwich;BirA Bifunctional Protein; domain 2;Bira Bifunctional Protein; Domain 2 0.9156 222 340 3.30.930.10
2rhsC00 Alpha Beta;2-Layer Sandwich;BirA Bifunctional Protein; domain 2;Bira Bifunctional Protein; Domain 2 0.9102 81 340 3.30.930.10
3tehA00 Alpha Beta;2-Layer Sandwich;BirA Bifunctional Protein; domain 2;Bira Bifunctional Protein; Domain 2 0.8981 93 338 3.30.930.10
ID Description Score Start End GO Terms
AF-W1YFA3-F1-model_v4 Phenylalanine-tRNA ligase alpha subunit 0.9974 222 293 GO:0000049
GO:0004826
GO:0005524
GO:0043039
AF-A0A7C6LC54-F1-model_v4 phenylalanine--tRNA ligase (EC 6.1.1.20) 0.9878 191 338 GO:0000049
GO:0004826
GO:0005524
GO:0005737
GO:0006432
GO:0016740
AF-A0A3D1QB45-F1-model_v4 Phenylalanine--tRNA ligase subunit alpha (EC 6.1.1.20) 0.9876 202 320 GO:0000049
GO:0004826
GO:0005524
GO:0005737
GO:0006432
GO:0016740
AF-A0A3B8V7P3-F1-model_v4 phenylalanine--tRNA ligase (EC 6.1.1.20) 0.9874 195 340 GO:0000049
GO:0004826
GO:0005524
GO:0005737
GO:0006432
GO:0016740
AF-A0A7Y2JRN8-F1-model_v4 Phenylalanine--tRNA ligase subunit alpha (EC 6.1.1.20) 0.9825 194 340 GO:0000049
GO:0004826
GO:0005524
GO:0005737
GO:0006432

Map