F348371

General Info

Members Datasets Scaffolds Average Seq Length
235 143 235 156

Family's Representative Sequence

Representative Sequence 3300042876|Ga0451577_0449314|Ga0451577_0449314_137_628
Length 156
Sequence LAAFFVAEKMGLQPRFEQEIARIVESEGLELVHIEFRKQGNSMVLRIDIDKEGGVNLSDCESISHQVSAFLDVEDAIASRYELEVSSPGLDRKFYSDADYQKFVGKLVRVRTSVAVKGLHVIVGRLKSFDGSTIVVEDDYEIALSDVKETRLEVEI

Samples

Sample ID Description Type Environment
1 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
2 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
9 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
10 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
11 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
12 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
13 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
14 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
15 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
16 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
17 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
18 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
19 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
20 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
21 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
22 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
23 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
24 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
25 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
26 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
27 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
28 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
29 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
30 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
31 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
32 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
33 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
34 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
35 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
36 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
37 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
38 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
39 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
40 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
41 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
42 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
43 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
44 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
45 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
46 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
47 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
48 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
49 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
50 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
51 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
52 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
53 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
54 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
55 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
56 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
57 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
58 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
59 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
60 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
61 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
62 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
63 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
64 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
65 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
66 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
67 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
68 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
69 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
70 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
71 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
72 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
73 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
74 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
75 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
76 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
77 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
78 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
79 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
80 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
81 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
82 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
83 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
84 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
85 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
86 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
87 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
88 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
113 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
114 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
115 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
116 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
117 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
118 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
119 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
120 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
121 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
122 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
123 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
124 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
125 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
126 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
127 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
128 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
129 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
130 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
131 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
132 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
133 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
134 3300049683 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I12_B_3_control Metagenome Rhizosphere
135 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
136 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
137 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
138 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
139 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
140 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
141 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
142 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
143 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.43
Rhizosphere 92.77
Stem 0
Stem Tuber 0
Unclassified 6.81

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065712_10490783 3300005290 Unclassified 656
2 Ga0065715_10114559 3300005293 Bacteria 2446
3 Ga0065707_10088240 3300005295 Bacteria 4727
4 Ga0065707_10115567 3300005295 Bacteria 2263
5 Ga0070658_10014295 3300005327 Bacteria 6370
6 Ga0070658_10172321 3300005327 Bacteria 1818
7 Ga0070676_10082230 3300005328 Bacteria 1956
8 Ga0070683_100000216 3300005329 Bacteria 39311
9 Ga0070683_100069832 3300005329 Bacteria 3276
10 Ga0070683_100312205 3300005329 Bacteria 1496
11 Ga0070683_100866525 3300005329 Unclassified 866
12 Ga0070670_100000226 3300005331 Bacteria 52113
13 Ga0070677_10025724 3300005333 Unclassified 2200
14 Ga0068869_100024773 3300005334 Bacteria 4158
15 Ga0070680_100339342 3300005336 Bacteria 1277
16 Ga0070682_100000002 3300005337 Bacteria 506802
17 Ga0068868_100000595 3300005338 Bacteria 24270
18 Ga0068868_100000761 3300005338 Bacteria 21829
19 Ga0068868_100519606 3300005338 Bacteria 1045
20 Ga0070689_100001482 3300005340 Bacteria 14977
21 Ga0070689_100246217 3300005340 Bacteria 1474
22 Ga0070661_100289559 3300005344 Bacteria 1272
23 Ga0070692_10009501 3300005345 Bacteria 4389
24 Ga0070675_100000001 3300005354 Bacteria 448137
25 Ga0070671_100189610 3300005355 Bacteria 1742
26 Ga0070673_100123867 3300005364 Bacteria 2160
27 Ga0070688_100719002 3300005365 Unclassified 775
28 Ga0070659_100947037 3300005366 Unclassified 754
29 Ga0070709_10073153 3300005434 Unclassified 2218
30 Ga0070713_100009294 3300005436 Bacteria 7028
31 Ga0070710_10514646 3300005437 Unclassified 821
32 Ga0070701_10000351 3300005438 Bacteria 15315
33 Ga0070700_100000018 3300005441 Bacteria 137176
34 Ga0070700_100432574 3300005441 Bacteria 997
35 Ga0070694_101086239 3300005444 Unclassified 667
36 Ga0070708_100015634 3300005445 Bacteria 6273
37 Ga0070708_100071703 3300005445 Bacteria 3119
38 Ga0070708_100769099 3300005445 Unclassified 905
39 Ga0070708_101115258 3300005445 Unclassified 739
40 Ga0070708_101142164 3300005445 Unclassified 729
41 Ga0070678_100890635 3300005456 Unclassified 813
42 Ga0070662_100636279 3300005457 Unclassified 899
43 Ga0070681_10443161 3300005458 Bacteria 1211
44 Ga0068867_100197196 3300005459 Bacteria 1610
45 Ga0070685_10014826 3300005466 Unclassified 4133
46 Ga0070706_100015457 3300005467 Bacteria 7048
47 Ga0070706_100042053 3300005467 Bacteria 4220
48 Ga0070706_100043671 3300005467 Bacteria 4141
49 Ga0070706_100256491 3300005467 Bacteria 1633
50 Ga0070707_100069780 3300005468 Bacteria 3384
51 Ga0070707_100328615 3300005468 Unclassified 1486
52 Ga0070707_100667197 3300005468 Bacteria 1002
53 Ga0070698_100102057 3300005471 Bacteria 2840
54 Ga0070698_100122303 3300005471 Bacteria 2561
55 Ga0070698_100186617 3300005471 Bacteria 2011
56 Ga0070698_100221744 3300005471 Bacteria 1824
57 Ga0070699_100032619 3300005518 Bacteria 4497
58 Ga0070699_100178357 3300005518 Bacteria 1885
59 Ga0070699_100361612 3300005518 Bacteria 1308
60 Ga0070679_100333489 3300005530 Bacteria 1465
61 Ga0070684_100005622 3300005535 Bacteria 9636
62 Ga0070684_100022638 3300005535 Bacteria 5245
63 Ga0070697_100043569 3300005536 Bacteria 3634
64 Ga0070697_100356819 3300005536 Bacteria 1263
65 Ga0068853_100089044 3300005539 Unclassified 2710
66 Ga0068853_100598458 3300005539 Bacteria 1047
67 Ga0070672_100000271 3300005543 Bacteria 29361
68 Ga0070672_100172794 3300005543 Bacteria 1798
69 Ga0070686_100488883 3300005544 Unclassified 953
70 Ga0070696_100889883 3300005546 Bacteria 738
71 Ga0070704_100609437 3300005549 Bacteria 960
72 Ga0070664_100908627 3300005564 Unclassified 826
73 Ga0068857_100054982 3300005577 Bacteria 3533
74 Ga0068854_100396849 3300005578 Bacteria 1140
75 Ga0068854_101572572 3300005578 Unclassified 598
76 Ga0070702_100192667 3300005615 Bacteria 1343
77 Ga0070702_101004416 3300005615 Unclassified 660
78 Ga0068852_101280407 3300005616 Unclassified 755
79 Ga0068864_100000064 3300005618 Bacteria 119117
80 Ga0068864_100479407 3300005618 Bacteria 1194
81 Ga0068870_10035097 3300005840 Bacteria 2571
82 Ga0068870_10037787 3300005840 Bacteria 2490
83 Ga0068858_100000685 3300005842 Bacteria 35368
84 Ga0070717_10000467 3300006028 Bacteria 25732
85 Ga0070717_10214820 3300006028 Bacteria 1689
86 Ga0070717_10234952 3300006028 Bacteria 1615
87 Ga0070717_10614512 3300006028 Unclassified 986
88 Ga0070716_100030992 3300006173 Bacteria 2906
89 Ga0070716_100080679 3300006173 Bacteria 1940
90 Ga0070716_100487382 3300006173 Unclassified 907
91 Ga0097621_100363077 3300006237 Bacteria 1290
92 Ga0068871_100262586 3300006358 Bacteria 1506
93 Ga0068871_100393806 3300006358 Bacteria 1232
94 Ga0075428_100167430 3300006844 Bacteria 2384
95 Ga0075430_100621417 3300006846 Unclassified 891
96 Ga0075431_100008707 3300006847 Bacteria 10167
97 Ga0075433_10657042 3300006852 Bacteria 919
98 Ga0075434_100228165 3300006871 Bacteria 1882
99 Ga0075434_100952982 3300006871 Bacteria 873
100 Ga0068865_100020252 3300006881 Bacteria 4314
101 Ga0075436_100001048 3300006914 Bacteria 18673
102 Ga0075436_100212962 3300006914 Bacteria 1370
103 Ga0075436_100357664 3300006914 Unclassified 1053
104 Ga0075435_100001265 3300007076 Bacteria 16220
105 Ga0075435_100069221 3300007076 Bacteria 2877
106 Ga0099794_10194322 3300007265 Bacteria 1038
107 Ga0105244_10007195 3300009036 Bacteria 7099
108 Ga0111539_10000017 3300009094 Bacteria 275456
109 Ga0105245_10000013 3300009098 Bacteria 266248
110 Ga0105245_10001819 3300009098 Bacteria 19407
111 Ga0105245_10025838 3300009098 Bacteria 5164
112 Ga0114129_10052580 3300009147 Bacteria 5717
113 Ga0114129_10831543 3300009147 Bacteria 1175
114 Ga0105243_10286684 3300009148 Bacteria 1486
115 Ga0105242_10001903 3300009176 Bacteria 16407
116 Ga0105248_10399165 3300009177 Bacteria 1548
117 Ga0105238_10000001 3300009551 Bacteria 2036163
118 Ga0105239_10791827 3300010375 Bacteria 1086
119 Ga0105246_10279870 3300011119 Bacteria 1338
120 Ga0157371_10049612 3300013102 Bacteria 2981
121 Ga0157369_10000654 3300013105 Bacteria 44821
122 Ga0157369_10149421 3300013105 Bacteria 2469
123 Ga0157374_10000022 3300013296 Bacteria 270307
124 Ga0157378_10023402 3300013297 Bacteria 5437
125 Ga0157378_10125610 3300013297 Bacteria 2369
126 Ga0163162_10147255 3300013306 Bacteria 2471
127 Ga0157375_10000007 3300013308 Bacteria 377743
128 Ga0157375_10000106 3300013308 Bacteria 82080
129 Ga0157375_10000277 3300013308 Bacteria 46526
130 Ga0157380_10026525 3300014326 Bacteria 4399
131 Ga0157377_10000002 3300014745 Bacteria 473827
132 Ga0157377_10000070 3300014745 Bacteria 80262
133 Ga0157377_10188185 3300014745 Bacteria 1303
134 Ga0157379_10468362 3300014968 Bacteria 1165
135 Ga0157376_10000020 3300014969 Bacteria 246318
136 Ga0157376_11193043 3300014969 Bacteria 789
137 Ga0213873_10000004 3300021358 Bacteria 774374
138 Ga0213873_10000619 3300021358 Bacteria 5803
139 Ga0213876_10000007 3300021384 Bacteria 670340
140 Ga0213876_10000173 3300021384 Bacteria 67175
141 Ga0213876_10009916 3300021384 Bacteria 5121
142 Ga0213876_10261438 3300021384 Bacteria 920
143 Ga0213876_10364718 3300021384 Unclassified 768
144 Ga0207655_1072293 3300025728 Bacteria 1276
145 Ga0207692_10586900 3300025898 Bacteria 715
146 Ga0207699_10263561 3300025906 Bacteria 1192
147 Ga0207699_10319027 3300025906 Bacteria 1089
148 Ga0207699_10457174 3300025906 Unclassified 917
149 Ga0207643_10055426 3300025908 Bacteria 2254
150 Ga0207643_10064449 3300025908 Bacteria 2097
151 Ga0207705_10022961 3300025909 Bacteria 4449
152 Ga0207705_10259027 3300025909 Bacteria 1328
153 Ga0207684_10110043 3300025910 Bacteria 2358
154 Ga0207695_10326890 3300025913 Bacteria 1422
155 Ga0207662_10125474 3300025918 Bacteria 1614
156 Ga0207646_10023885 3300025922 Bacteria 5609
157 Ga0207646_10104439 3300025922 Bacteria 2541
158 Ga0207646_10847929 3300025922 Unclassified 812
159 Ga0207694_10000001 3300025924 Bacteria 4078485
160 Ga0207650_10000538 3300025925 Bacteria 30976
161 Ga0207659_10000004 3300025926 Bacteria 476977
162 Ga0207687_10000014 3300025927 Bacteria 297704
163 Ga0207687_10001830 3300025927 Bacteria 14634
164 Ga0207687_10014925 3300025927 Bacteria 5087
165 Ga0207700_10008673 3300025928 Bacteria 6313
166 Ga0207644_10046387 3300025931 Bacteria 3096
167 Ga0207686_10001244 3300025934 Bacteria 14736
168 Ga0207670_10002208 3300025936 Bacteria 10175
169 Ga0207670_10264566 3300025936 Bacteria 1334
170 Ga0207704_10287305 3300025938 Bacteria 1253
171 Ga0207665_10056987 3300025939 Bacteria 2639
172 Ga0207665_10099718 3300025939 Bacteria 2026
173 Ga0207665_10125692 3300025939 Unclassified 1816
174 Ga0207665_10378821 3300025939 Bacteria 1073
175 Ga0207691_10000594 3300025940 Bacteria 36084
176 Ga0207691_10272971 3300025940 Bacteria 1456
177 Ga0207689_10026938 3300025942 Bacteria 4812
178 Ga0207689_10041826 3300025942 Bacteria 3791
179 Ga0207689_10806022 3300025942 Unclassified 793
180 Ga0207661_10000044 3300025944 Bacteria 115753
181 Ga0207661_10168318 3300025944 Bacteria 1906
182 Ga0207661_10360568 3300025944 Bacteria 1313
183 Ga0207677_10000004 3300026023 Bacteria 299062
184 Ga0207677_10000009 3300026023 Bacteria 252751
185 Ga0207703_10000900 3300026035 Bacteria 29108
186 Ga0207639_10000008 3300026041 Bacteria 434844
187 Ga0207639_10150624 3300026041 Bacteria 1948
188 Ga0207708_10000005 3300026075 Bacteria 284735
189 Ga0207648_10196394 3300026089 Bacteria 1789
190 Ga0207648_10635072 3300026089 Bacteria 986
191 Ga0207676_10000014 3300026095 Bacteria 339896
192 Ga0207674_10026162 3300026116 Bacteria 6207
193 Ga0207683_10428356 3300026121 Bacteria 1219
194 Ga0207428_10000010 3300027907 Bacteria 397329
195 Ga0307511_10019262 3300030521 Bacteria 6496
196 Ga0307416_102717892 3300032002 Unclassified 591
197 Ga0373932_0000627 3300035112 Bacteria 10709
198 Ga0373943_0025290 3300035170 Bacteria 2775
199 Ga0436365_0227626 3300039437 Bacteria 727
200 Ga0436365_0587160 3300039437 Bacteria 47503
201 Ga0436365_0786301 3300039437 Bacteria 4490
202 Ga0436365_0788805 3300039437 Bacteria 42441
203 Ga0436365_1381143 3300039437 Unclassified 625
204 Ga0436365_1586173 3300039437 Bacteria 7409
205 Ga0436365_1870818 3300039437 Bacteria 6149
206 Ga0436363_1490657 3300039450 Bacteria 1080
207 Ga0436363_1540493 3300039450 Bacteria 535
208 Ga0436362_0290430 3300039453 Bacteria 772596
209 Ga0436362_0443330 3300039453 Bacteria 13093
210 Ga0451839_0863354 3300041496 Unclassified 2455
211 Ga0451577_0006169 3300042876 Bacteria 12046
212 Ga0451577_0449314 3300042876 Bacteria 1170
213 Ga0451577_0762996 3300042876 Unclassified 875
214 Ga0453683_0260404 3300044673 Unclassified 1106
215 Ga0453684_0008624 3300044712 Bacteria 18156
216 Ga0453684_0987159 3300044712 Unclassified 896
217 Ga0451576_0365583 3300045051 Bacteria 1511
218 Ga0451576_0451465 3300045051 Bacteria 1350
219 Ga0495620_0001028 3300046515 Bacteria 17156
220 Ga0496101_0911192 3300048904 Bacteria 692
221 Ga0501073_0003262 3300049589 Bacteria 12177
222 Ga0501253_045965 3300049683 Unclassified 898
223 Ga0501080_0008327 3300049742 Bacteria 9394
224 nmdc:mga05p37_290363_c1 3300050507 Bacteria 1947
225 nmdc:mga05p37_655350_c1 3300050507 Bacteria 1175
226 nmdc:mga06r32_11926_c1 3300050510 Bacteria 7830
227 nmdc:mga08y16_15_c1 3300050511 Bacteria 397324
228 nmdc:mga0n895_246154_c1 3300050512 Bacteria 1814
229 nmdc:mga0n895_248245_c1 3300050512 Bacteria 1806
230 nmdc:mga0n895_510105_c1 3300050512 Bacteria 1211
231 nmdc:mga0rr50_431_c2 3300050513 Bacteria 18490
232 nmdc:mga08x19_345_c1 3300050514 Bacteria 21206
233 nmdc:mga08x19_489938_c1 3300050514 Unclassified 867
234 nmdc:mga0a205_734860_c1 3300050515 Bacteria 836
235 Ga0495655_0000197 3300053083 Bacteria 11357

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025942 Ga0207689_10806022 Ga0207689_108060221 138
2 3300042876 Ga0451577_0449314 Ga0451577_0449314_137_628 147
3 3300005334 Ga0068869_100024773 Ga0068869_1000247732 148
4 3300005445 Ga0070708_101115258 Ga0070708_1011152581 148
5 3300005468 Ga0070707_100328615 Ga0070707_1003286152 148
6 3300005840 Ga0068870_10037787 Ga0068870_100377873 148
7 3300014745 Ga0157377_10000070 Ga0157377_1000007056 148
8 3300042876 Ga0451577_0006169 Ga0451577_0006169_8670_9134 154
9 3300044712 Ga0453684_0008624 Ga0453684_0008624_1119_1583 154
10 3300044712 Ga0453684_0987159 Ga0453684_0987159_291_755 154
11 3300045051 Ga0451576_0365583 Ga0451576_0365583_830_1294 154
12 3300045051 Ga0451576_0451465 Ga0451576_0451465_817_1281 154
13 3300005290 Ga0065712_10490783 Ga0065712_104907831 155
14 3300005293 Ga0065715_10114559 Ga0065715_101145591 155
15 3300005295 Ga0065707_10088240 Ga0065707_100882403 155
16 3300005295 Ga0065707_10115567 Ga0065707_101155672 155
17 3300005327 Ga0070658_10014295 Ga0070658_100142953 155
18 3300005327 Ga0070658_10172321 Ga0070658_101723212 155
19 3300005328 Ga0070676_10082230 Ga0070676_100822302 155
20 3300005329 Ga0070683_100000216 Ga0070683_10000021624 155
21 3300005329 Ga0070683_100069832 Ga0070683_1000698322 155
22 3300005329 Ga0070683_100312205 Ga0070683_1003122052 155
23 3300005329 Ga0070683_100866525 Ga0070683_1008665251 155
24 3300005331 Ga0070670_100000226 Ga0070670_10000022620 155
25 3300005333 Ga0070677_10025724 Ga0070677_100257242 155
26 3300005336 Ga0070680_100339342 Ga0070680_1003393422 155
27 3300005337 Ga0070682_100000002 Ga0070682_100000002212 155
28 3300005338 Ga0068868_100000595 Ga0068868_10000059526 155
29 3300005338 Ga0068868_100000761 Ga0068868_10000076123 155
30 3300005338 Ga0068868_100519606 Ga0068868_1005196062 155
31 3300005340 Ga0070689_100001482 Ga0070689_10000148213 155
32 3300005340 Ga0070689_100246217 Ga0070689_1002462172 155
33 3300005344 Ga0070661_100289559 Ga0070661_1002895591 155
34 3300005345 Ga0070692_10009501 Ga0070692_100095013 155
35 3300005354 Ga0070675_100000001 Ga0070675_100000001234 155
36 3300005355 Ga0070671_100189610 Ga0070671_1001896102 155
37 3300005364 Ga0070673_100123867 Ga0070673_1001238672 155
38 3300005365 Ga0070688_100719002 Ga0070688_1007190021 155
39 3300005366 Ga0070659_100947037 Ga0070659_1009470371 155
40 3300005434 Ga0070709_10073153 Ga0070709_100731532 155
41 3300005436 Ga0070713_100009294 Ga0070713_1000092945 155
42 3300005437 Ga0070710_10514646 Ga0070710_105146462 155
43 3300005438 Ga0070701_10000351 Ga0070701_1000035114 155
44 3300005441 Ga0070700_100000018 Ga0070700_10000001846 155
45 3300005441 Ga0070700_100432574 Ga0070700_1004325742 155
46 3300005444 Ga0070694_101086239 Ga0070694_1010862391 155
47 3300005445 Ga0070708_100015634 Ga0070708_1000156343 155
48 3300005445 Ga0070708_100071703 Ga0070708_1000717033 155
49 3300005445 Ga0070708_100769099 Ga0070708_1007690991 155
50 3300005445 Ga0070708_101142164 Ga0070708_1011421641 155
51 3300005456 Ga0070678_100890635 Ga0070678_1008906352 155
52 3300005457 Ga0070662_100636279 Ga0070662_1006362792 155
53 3300005458 Ga0070681_10443161 Ga0070681_104431612 155
54 3300005459 Ga0068867_100197196 Ga0068867_1001971962 155
55 3300005466 Ga0070685_10014826 Ga0070685_100148264 155
56 3300005467 Ga0070706_100015457 Ga0070706_1000154575 155
57 3300005467 Ga0070706_100042053 Ga0070706_1000420533 155
58 3300005467 Ga0070706_100043671 Ga0070706_1000436712 155
59 3300005467 Ga0070706_100256491 Ga0070706_1002564912 155
60 3300005468 Ga0070707_100069780 Ga0070707_1000697802 155
61 3300005468 Ga0070707_100667197 Ga0070707_1006671972 155
62 3300005471 Ga0070698_100102057 Ga0070698_1001020572 155
63 3300005471 Ga0070698_100122303 Ga0070698_1001223033 155
64 3300005471 Ga0070698_100186617 Ga0070698_1001866172 155
65 3300005471 Ga0070698_100221744 Ga0070698_1002217441 155
66 3300005518 Ga0070699_100032619 Ga0070699_1000326193 155
67 3300005518 Ga0070699_100178357 Ga0070699_1001783572 155
68 3300005518 Ga0070699_100361612 Ga0070699_1003616122 155
69 3300005530 Ga0070679_100333489 Ga0070679_1003334892 155
70 3300005535 Ga0070684_100005622 Ga0070684_1000056227 155
71 3300005535 Ga0070684_100022638 Ga0070684_1000226383 155
72 3300005536 Ga0070697_100043569 Ga0070697_1000435692 155
73 3300005536 Ga0070697_100356819 Ga0070697_1003568191 155
74 3300005539 Ga0068853_100089044 Ga0068853_1000890442 155
75 3300005539 Ga0068853_100598458 Ga0068853_1005984582 155
76 3300005543 Ga0070672_100000271 Ga0070672_10000027119 155
77 3300005543 Ga0070672_100172794 Ga0070672_1001727941 155
78 3300005544 Ga0070686_100488883 Ga0070686_1004888832 155
79 3300005546 Ga0070696_100889883 Ga0070696_1008898831 155
80 3300005549 Ga0070704_100609437 Ga0070704_1006094372 155
81 3300005564 Ga0070664_100908627 Ga0070664_1009086272 155
82 3300005577 Ga0068857_100054982 Ga0068857_1000549825 155
83 3300005578 Ga0068854_100396849 Ga0068854_1003968492 155
84 3300005578 Ga0068854_101572572 Ga0068854_1015725721 155
85 3300005615 Ga0070702_100192667 Ga0070702_1001926672 155
86 3300005615 Ga0070702_101004416 Ga0070702_1010044161 155
87 3300005616 Ga0068852_101280407 Ga0068852_1012804071 155
88 3300005618 Ga0068864_100000064 Ga0068864_10000006481 155
89 3300005618 Ga0068864_100479407 Ga0068864_1004794072 155
90 3300005840 Ga0068870_10035097 Ga0068870_100350973 155
91 3300005842 Ga0068858_100000685 Ga0068858_10000068522 155
92 3300006028 Ga0070717_10000467 Ga0070717_1000046728 155
93 3300006028 Ga0070717_10214820 Ga0070717_102148203 155
94 3300006028 Ga0070717_10234952 Ga0070717_102349522 155
95 3300006028 Ga0070717_10614512 Ga0070717_106145121 155
96 3300006173 Ga0070716_100030992 Ga0070716_1000309923 155
97 3300006173 Ga0070716_100080679 Ga0070716_1000806792 155
98 3300006173 Ga0070716_100487382 Ga0070716_1004873822 155
99 3300006237 Ga0097621_100363077 Ga0097621_1003630772 155
100 3300006358 Ga0068871_100262586 Ga0068871_1002625862 155
101 3300006358 Ga0068871_100393806 Ga0068871_1003938062 155
102 3300006844 Ga0075428_100167430 Ga0075428_1001674302 155
103 3300006846 Ga0075430_100621417 Ga0075430_1006214172 155
104 3300006847 Ga0075431_100008707 Ga0075431_1000087076 155
105 3300006852 Ga0075433_10657042 Ga0075433_106570422 155
106 3300006871 Ga0075434_100228165 Ga0075434_1002281652 155
107 3300006871 Ga0075434_100952982 Ga0075434_1009529822 155
108 3300006881 Ga0068865_100020252 Ga0068865_1000202524 155
109 3300006914 Ga0075436_100001048 Ga0075436_10000104817 155
110 3300006914 Ga0075436_100212962 Ga0075436_1002129623 155
111 3300006914 Ga0075436_100357664 Ga0075436_1003576641 155
112 3300007076 Ga0075435_100001265 Ga0075435_1000012652 155
113 3300007076 Ga0075435_100069221 Ga0075435_1000692211 155
114 3300007265 Ga0099794_10194322 Ga0099794_101943222 155
115 3300009036 Ga0105244_10007195 Ga0105244_100071952 155
116 3300009094 Ga0111539_10000017 Ga0111539_10000017178 155
117 3300009098 Ga0105245_10000013 Ga0105245_10000013211 155
118 3300009098 Ga0105245_10001819 Ga0105245_100018192 155
119 3300009098 Ga0105245_10025838 Ga0105245_100258384 155
120 3300009147 Ga0114129_10052580 Ga0114129_100525803 155
121 3300009147 Ga0114129_10831543 Ga0114129_108315432 155
122 3300009148 Ga0105243_10286684 Ga0105243_102866842 155
123 3300009176 Ga0105242_10001903 Ga0105242_1000190311 155
124 3300009177 Ga0105248_10399165 Ga0105248_103991651 155
125 3300009551 Ga0105238_10000001 Ga0105238_10000001874 155
126 3300010375 Ga0105239_10791827 Ga0105239_107918271 155
127 3300011119 Ga0105246_10279870 Ga0105246_102798702 155
128 3300013102 Ga0157371_10049612 Ga0157371_100496122 155
129 3300013105 Ga0157369_10000654 Ga0157369_1000065430 155
130 3300013105 Ga0157369_10149421 Ga0157369_101494212 155
131 3300013296 Ga0157374_10000022 Ga0157374_1000002212 155
132 3300013297 Ga0157378_10023402 Ga0157378_100234025 155
133 3300013297 Ga0157378_10125610 Ga0157378_101256102 155
134 3300013306 Ga0163162_10147255 Ga0163162_101472553 155
135 3300013308 Ga0157375_10000007 Ga0157375_10000007256 155
136 3300013308 Ga0157375_10000106 Ga0157375_1000010663 155
137 3300013308 Ga0157375_10000277 Ga0157375_1000027718 155
138 3300014326 Ga0157380_10026525 Ga0157380_100265254 155
139 3300014745 Ga0157377_10000002 Ga0157377_100000021 155
140 3300014745 Ga0157377_10188185 Ga0157377_101881851 155
141 3300014968 Ga0157379_10468362 Ga0157379_104683622 155
142 3300014969 Ga0157376_10000020 Ga0157376_10000020143 155
143 3300014969 Ga0157376_11193043 Ga0157376_111930432 155
144 3300021358 Ga0213873_10000004 Ga0213873_10000004531 155
145 3300021358 Ga0213873_10000619 Ga0213873_100006195 155
146 3300021384 Ga0213876_10000007 Ga0213876_10000007531 155
147 3300021384 Ga0213876_10000173 Ga0213876_1000017341 155
148 3300021384 Ga0213876_10009916 Ga0213876_100099162 155
149 3300021384 Ga0213876_10261438 Ga0213876_102614381 155
150 3300021384 Ga0213876_10364718 Ga0213876_103647182 155
151 3300025728 Ga0207655_1072293 Ga0207655_10722932 155
152 3300025898 Ga0207692_10586900 Ga0207692_105869002 155
153 3300025906 Ga0207699_10263561 Ga0207699_102635611 155
154 3300025906 Ga0207699_10319027 Ga0207699_103190271 155
155 3300025906 Ga0207699_10457174 Ga0207699_104571742 155
156 3300025908 Ga0207643_10055426 Ga0207643_100554262 155
157 3300025908 Ga0207643_10064449 Ga0207643_100644492 155
158 3300025909 Ga0207705_10022961 Ga0207705_100229613 155
159 3300025909 Ga0207705_10259027 Ga0207705_102590272 155
160 3300025910 Ga0207684_10110043 Ga0207684_101100432 155
161 3300025913 Ga0207695_10326890 Ga0207695_103268902 155
162 3300025918 Ga0207662_10125474 Ga0207662_101254742 155
163 3300025922 Ga0207646_10023885 Ga0207646_100238854 155
164 3300025922 Ga0207646_10104439 Ga0207646_101044393 155
165 3300025922 Ga0207646_10847929 Ga0207646_108479291 155
166 3300025924 Ga0207694_10000001 Ga0207694_100000011914 155
167 3300025925 Ga0207650_10000538 Ga0207650_100005383 155
168 3300025926 Ga0207659_10000004 Ga0207659_10000004232 155
169 3300025927 Ga0207687_10000014 Ga0207687_10000014211 155
170 3300025927 Ga0207687_10001830 Ga0207687_1000183015 155
171 3300025927 Ga0207687_10014925 Ga0207687_100149253 155
172 3300025928 Ga0207700_10008673 Ga0207700_100086734 155
173 3300025931 Ga0207644_10046387 Ga0207644_100463872 155
174 3300025934 Ga0207686_10001244 Ga0207686_100012445 155
175 3300025936 Ga0207670_10002208 Ga0207670_100022089 155
176 3300025936 Ga0207670_10264566 Ga0207670_102645662 155
177 3300025938 Ga0207704_10287305 Ga0207704_102873052 155
178 3300025939 Ga0207665_10056987 Ga0207665_100569872 155
179 3300025939 Ga0207665_10099718 Ga0207665_100997182 155
180 3300025939 Ga0207665_10125692 Ga0207665_101256922 155
181 3300025939 Ga0207665_10378821 Ga0207665_103788212 155
182 3300025940 Ga0207691_10000594 Ga0207691_1000059420 155
183 3300025940 Ga0207691_10272971 Ga0207691_102729712 155
184 3300025942 Ga0207689_10026938 Ga0207689_100269385 155
185 3300025942 Ga0207689_10041826 Ga0207689_100418263 155
186 3300025944 Ga0207661_10000044 Ga0207661_100000447 155
187 3300025944 Ga0207661_10168318 Ga0207661_101683182 155
188 3300025944 Ga0207661_10360568 Ga0207661_103605682 155
189 3300026023 Ga0207677_10000004 Ga0207677_10000004254 155
190 3300026023 Ga0207677_10000009 Ga0207677_1000000975 155
191 3300026035 Ga0207703_10000900 Ga0207703_100009006 155
192 3300026041 Ga0207639_10000008 Ga0207639_1000000897 155
193 3300026041 Ga0207639_10150624 Ga0207639_101506242 155
194 3300026075 Ga0207708_10000005 Ga0207708_10000005221 155
195 3300026089 Ga0207648_10196394 Ga0207648_101963943 155
196 3300026089 Ga0207648_10635072 Ga0207648_106350722 155
197 3300026095 Ga0207676_10000014 Ga0207676_10000014260 155
198 3300026116 Ga0207674_10026162 Ga0207674_100261623 155
199 3300026121 Ga0207683_10428356 Ga0207683_104283562 155
200 3300027907 Ga0207428_10000010 Ga0207428_10000010190 155
201 3300030521 Ga0307511_10019262 Ga0307511_100192625 155
202 3300032002 Ga0307416_102717892 Ga0307416_1027178921 155
203 3300035112 Ga0373932_0000627 Ga0373932_0000627_2760_3227 155
204 3300035170 Ga0373943_0025290 Ga0373943_0025290_1041_1508 155
205 3300039437 Ga0436365_0227626 Ga0436365_0227626_16_483 155
206 3300039437 Ga0436365_0587160 Ga0436365_0587160_9073_9540 155
207 3300039437 Ga0436365_0786301 Ga0436365_0786301_509_976 155
208 3300039437 Ga0436365_0788805 Ga0436365_0788805_27286_27753 155
209 3300039437 Ga0436365_1381143 Ga0436365_1381143_39_506 155
210 3300039437 Ga0436365_1586173 Ga0436365_1586173_1113_1634 155
211 3300039437 Ga0436365_1870818 Ga0436365_1870818_5536_6003 155
212 3300039450 Ga0436363_1490657 Ga0436363_1490657_298_765 155
213 3300039450 Ga0436363_1540493 Ga0436363_1540493_28_495 155
214 3300039453 Ga0436362_0290430 Ga0436362_0290430_195333_195800 155
215 3300039453 Ga0436362_0443330 Ga0436362_0443330_8959_9426 155
216 3300041496 Ga0451839_0863354 Ga0451839_0863354_1704_2171 155
217 3300042876 Ga0451577_0762996 Ga0451577_0762996_252_797 155
218 3300044673 Ga0453683_0260404 Ga0453683_0260404_459_926 155
219 3300046515 Ga0495620_0001028 Ga0495620_0001028_2515_2982 155
220 3300048904 Ga0496101_0911192 Ga0496101_0911192_11_478 155
221 3300049589 Ga0501073_0003262 Ga0501073_0003262_1259_1726 155
222 3300049683 Ga0501253_045965 Ga0501253_045965_370_837 155
223 3300049742 Ga0501080_0008327 Ga0501080_0008327_3416_3883 155
224 3300050507 nmdc:mga05p37_290363_c1 nmdc:mga05p37_290363_c1_854_1321 155
225 3300050507 nmdc:mga05p37_655350_c1 nmdc:mga05p37_655350_c1_398_865 155
226 3300050510 nmdc:mga06r32_11926_c1 nmdc:mga06r32_11926_c1_5865_6332 155
227 3300050511 nmdc:mga08y16_15_c1 nmdc:mga08y16_15_c1_188828_189295 155
228 3300050512 nmdc:mga0n895_246154_c1 nmdc:mga0n895_246154_c1_414_881 155
229 3300050512 nmdc:mga0n895_248245_c1 nmdc:mga0n895_248245_c1_289_756 155
230 3300050512 nmdc:mga0n895_510105_c1 nmdc:mga0n895_510105_c1_648_1115 155
231 3300050513 nmdc:mga0rr50_431_c2 nmdc:mga0rr50_431_c2_790_1257 155
232 3300050514 nmdc:mga08x19_345_c1 nmdc:mga08x19_345_c1_4960_5427 155
233 3300050514 nmdc:mga08x19_489938_c1 nmdc:mga08x19_489938_c1_347_814 155
234 3300050515 nmdc:mga0a205_734860_c1 nmdc:mga0a205_734860_c1_108_575 155
235 3300053083 Ga0495655_0000197 Ga0495655_0000197_8144_8611 155

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02576

RimP_N

RimP N-terminal domain

19

91

0.98

PF17384

DUF150_C

RimP C-terminal SH3 domain

95

156

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
2x4j-assembly1.cif.gz_A crystal structure of orf137 from pyrobaculum spherical virus 0.8337 96 153
3hfo-assembly1.cif.gz_B crystal structure of an hfq protein from synechocystis sp. 0.8108 90 153
1kq1-assembly1.cif.gz_H 1.55 a crystal structure of the pleiotropic translational regulator, hfq 0.8019 88 152
2zae-assembly2.cif.gz_C crystal structure of protein ph1601p in complex with protein ph1771p of archaeal ribonuclease p from pyrococcus horikoshii ot3 0.7974 95 146
4jrk-assembly1.cif.gz_B crystal structure of escherichia coli hfq surface mutant 0.7952 87 152
ID Description Score Start End Superfamily
af_Q2G2D3_87_153_2.30.30.180 Mainly Beta;Roll;SH3 type barrels.;Ribosome maturation factor RimP, C-terminal domain 0.9303 88 153 2.30.30.180
af_P0A8A8_87_147_2.30.30.180 Mainly Beta;Roll;SH3 type barrels.;Ribosome maturation factor RimP, C-terminal domain 0.9219 88 152 2.30.30.180
af_Q2G2D3_1_80_3.30.300.70 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;RimP-like superfamily, N-terminal 0.9175 1 80 3.30.300.70
af_P0A8A8_87_147_2.30.30.180 Mainly Beta;Roll;SH3 type barrels.;Ribosome maturation factor RimP, C-terminal domain 0.908 88 152 2.30.30.180
af_Q2G2D3_1_80_3.30.300.70 Alpha Beta;2-Layer Sandwich;GMP Synthetase; Chain A, domain 3;RimP-like superfamily, N-terminal 0.9069 1 80 3.30.300.70
ID Description Score Start End GO Terms
AF-A0A2V7XY36-F1-model_v4 Ribosome maturation factor RimP 0.9903 1 155 GO:0000028
GO:0005829
GO:0006412
AF-A0A316LE15-F1-model_v4 Ribosome maturation factor RimP N-terminal domain-containing protein 0.9358 6 81 GO:0000028
GO:0005829
GO:0006412
AF-A0A6L4YCQ1-F1-model_v4 Ribosome maturation factor RimP N-terminal domain-containing protein 0.9327 2 78 GO:0000028
GO:0005829
GO:0006412
AF-F2LVA2-F1-model_v4 Ribosome maturation factor RimP 0.9309 3 155 GO:0000028
GO:0005829
GO:0006412
AF-A0A496SX02-F1-model_v4 Ribosome maturation factor RimP N-terminal domain-containing protein 0.9288 6 81 GO:0000028
GO:0005829
GO:0006412

Feature Viewer

pLDDT pTM Quality
89.48 0.7 High
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Predicted Structure (AlphaFold2)

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